Basic Information | |
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Family ID | F091148 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 107 |
Average Sequence Length | 48 residues |
Representative Sequence | MTTKLDVRISRRCFLASASAATTVALLAPRKLFAQDDGLVQTARRT |
Number of Associated Samples | 78 |
Number of Associated Scaffolds | 107 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 97.17 % |
% of genes near scaffold ends (potentially truncated) | 98.13 % |
% of genes from short scaffolds (< 2000 bps) | 88.79 % |
Associated GOLD sequencing projects | 72 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.40 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (52.336 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (39.252 % of family members) |
Environment Ontology (ENVO) | Unclassified (48.598 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (71.028 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 43.24% β-sheet: 0.00% Coil/Unstructured: 56.76% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.40 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Vadose Zone Soil Tropical Forest Soil Bulk Soil Soil Soil Soil Hardwood Forest Soil Tropical Peatland Tropical Forest Soil Forest Soil Soil Avena Fatua Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0066690_108480462 | 3300005177 | Soil | MNTKFNPSISRHRFLVSTSMATSIAFLAPRHLLAQDEGLVQTARKTAAAAIVTVQKLR |
Ga0126384_118861121 | 3300010046 | Tropical Forest Soil | MTTKLDVRISRRCFLASAGATTTVALVMPRKLFGQDEGL |
Ga0126373_113304212 | 3300010048 | Tropical Forest Soil | MTTKLDVRISRRSFLASATSAFAVALMAPRQLFAKNDGLVQTARRTAAASNLTVQKLR |
Ga0126373_120237462 | 3300010048 | Tropical Forest Soil | MSTKLDVGISRRSFLASASAAAAVAFVAPRRLFAQDDGLVQTA |
Ga0126370_124610612 | 3300010358 | Tropical Forest Soil | MTSILDAPNSRRSFLASTIATTTVALMAPRQLFSQNDGLVQTARRTAAAA |
Ga0126376_130973501 | 3300010359 | Tropical Forest Soil | MTTILDVRISRRSFLASTIATTTVALMAPRQLLAQNDGLVQTARKTAAAATVTVQK |
Ga0126372_111585052 | 3300010360 | Tropical Forest Soil | MDTKLDEISRRCFLVSATATTTVALLAPRKLFAQGDGLVQTARKSA |
Ga0126378_131731081 | 3300010361 | Tropical Forest Soil | MSAELDVGISRRSFLASASSAAAVAFVAPRRFFAQDDGLVQTARRTASTDTVT |
Ga0126379_117559222 | 3300010366 | Tropical Forest Soil | MSRELAARVSRRNFVASASAATTMAWLAPRKVFAQEEGLV |
Ga0126381_1006270723 | 3300010376 | Tropical Forest Soil | MTTKLDLRISRRCFLASTSAATTVALLAPRNKLFAQDDGLVQTARKTAAGATVTVQK |
Ga0126381_1048387231 | 3300010376 | Tropical Forest Soil | MTTELGVRISRRCFLASASAATTVALLAQRKLFALDDGLVQTA* |
Ga0150983_121259421 | 3300011120 | Forest Soil | MSARLDSGVSRRRFLICTSMAATVGVLAPCDLFAQDDGLVQTARKTAAAATIT |
Ga0150983_144202411 | 3300011120 | Forest Soil | MGAKFESGISRRGFLISTSMVAAVGVLYPRDLLAQDDGLVQTARKTAAAATITVQKLRGNVS |
Ga0150983_149777302 | 3300011120 | Forest Soil | METKLDPSISRRRFLVSTSMATTVALLAPRHMFAQDEGLVQTARKTAAA |
Ga0137392_100086351 | 3300011269 | Vadose Zone Soil | MDTKLDSGISRRRFLASTSLVATVALLAPRDLFAQDDGLV |
Ga0137393_100851191 | 3300011271 | Vadose Zone Soil | MSANLDCGISRRRFLLSTSMAATVGLLAPRDLFAQDDGLVQTARKTAAAAT |
Ga0150985_1085783281 | 3300012212 | Avena Fatua Rhizosphere | MSKTLDFGIPRRRFLISTGMAASVGLLAPRDLFAQDNGLVQKARKTAATATVTVQ |
Ga0137394_104508992 | 3300012922 | Vadose Zone Soil | MNTQLEPTISRRRLLRSTSLAATVGLLAPRHLLAQDDGLV |
Ga0182036_106253091 | 3300016270 | Soil | MTTKLDVRVSRRCFLASASGATALAFVAPLKLFAEDDGL |
Ga0182036_116877871 | 3300016270 | Soil | MFTKPHTGISRRRFLVSTSMVTTVALVAPRRVFAQDQGLVQAARK |
Ga0182036_118562011 | 3300016270 | Soil | MSTELDVRISRRNFLASASAATTMAWLAPSKLFAQEDGLVQTARTTA |
Ga0182036_118717391 | 3300016270 | Soil | MNTKTDPGISRRRFLVSTSMATTGVLLAPSYVFAQGEGLVQTARKTAGAATITAQKLRGK |
Ga0182041_104173391 | 3300016294 | Soil | MSTKLDVGISRRSFLATASAAAAVAFVAPRRLFAQDDGLVQTARRTASADKVT |
Ga0182033_100705481 | 3300016319 | Soil | MNSKPDRGISRRRFLASASMATSIALLAPRHLVTQNEGL |
Ga0182033_116251302 | 3300016319 | Soil | MSTELAVRVSRRNFLASASAATTIAWLAPRKLFAQEEGLVQTARKTAATDKITIQKLRGN |
Ga0182035_106107861 | 3300016341 | Soil | MTMKLDVRVSRRCFLASASGATALAFVAPLKLFAEDDGLVQTA |
Ga0182032_114496302 | 3300016357 | Soil | MTMKLDVRVSRRCFLASASGATALAFVAPLKLFAEDDGLVQT |
Ga0182032_120627711 | 3300016357 | Soil | MNSKPDRGISRRRFLASASMATSIALLAPRHLVTQNEGLVQTARKTA |
Ga0182034_110092891 | 3300016371 | Soil | MSTKLDVGISRRSFLATASAAAAVAFVAPRRLFAQDDGLV |
Ga0182040_104798743 | 3300016387 | Soil | MSTKLDVGISRRSFLATASAAAAVAFVAPRRLFAQDDGLVQTARRTASADKVTV |
Ga0182040_119070832 | 3300016387 | Soil | MTTKLDVRISRRCFLASASAATTVALLAPRKLFAQDDGLVQTARRT |
Ga0182037_119654961 | 3300016404 | Soil | MTTKLDVRVSRRCFLASASGATALAFVAPLKLFAEDDGLVQTA |
Ga0182039_116380921 | 3300016422 | Soil | MSTELAVRVSRRNFLASASAATTIAWLAPRKLFAQEEGLVQTARKT |
Ga0182039_120623252 | 3300016422 | Soil | MNTTLDVRISRRSLLASTIATTTVALVAPRQLFAQNDGLVQTARKTASAATITAQTLRVNISVLMGAGG |
Ga0182039_121701202 | 3300016422 | Soil | MSAKLDVRISRRFFLASASAAAAVGFVAPRRLFAQDDGLVQTARRTASTDTVTVQ |
Ga0182038_119599142 | 3300016445 | Soil | MSTELAVRISRRNFLASASAATTITWLAPSKLFAQEDGLVQTARRTAATDKITIRKLRG |
Ga0187778_108241231 | 3300017961 | Tropical Peatland | MSTKPHTGISRRRFLASTGMVTTVALVAPRQVFAQDQGLVQTARKTAASDKV |
Ga0187777_108323632 | 3300017974 | Tropical Peatland | MSTKLHTGISRRRFLLSTSMVTAAALVAPRHVLAQDQGLVQTARKTAA |
Ga0187766_104600541 | 3300018058 | Tropical Peatland | MTTSLDTRVSRRCFVASASAATAMAWLAPRRLFAQGDGLVQTARRTAAADKVT |
Ga0179590_10534673 | 3300020140 | Vadose Zone Soil | MSTRLDSGSSRRRFLISTSMAATVGLLAPRDLFAQDDG |
Ga0179592_104674581 | 3300020199 | Vadose Zone Soil | MSAKLDSGISRRRFLISTSMAATVGLLAPRDLFAQGDGLVQTARK |
Ga0210407_106471471 | 3300020579 | Soil | MSTTLDSGISRRRFLISTSMAATVGLLAPRDLFAQDDGLVQTARKTAAAGTITVQKLR |
Ga0210403_109919972 | 3300020580 | Soil | MSTTLDSGISRRRFLISTSMAATVALLAPRDLFAQDDGLVQTARKTA |
Ga0210399_100960274 | 3300020581 | Soil | MYTKPGSNISRRRFLTSTSVATTVALVAPCHVFAQDE |
Ga0210395_112926622 | 3300020582 | Soil | MNPKLNADISRRRFLVSTSMATTVALLAPRHMFAQDEGLVQTARK |
Ga0210401_101651751 | 3300020583 | Soil | VSVKLDSDISRRRFLISTSMAATVGLLAPRALFAQDEGLVQTARKTA |
Ga0210404_101687782 | 3300021088 | Soil | MNPKLNADISRRRFLVSTSMATTVALLAPRHMFAQDEGLVQTARKTA |
Ga0210404_103448702 | 3300021088 | Soil | MSAKLDSGISRRRFLISSNMAATVGVLAPRDLFAQDDGL |
Ga0210400_101317281 | 3300021170 | Soil | MSANLDSGISRRRFLLSTSMAATVGVLAPRDLFAQEDGLVQTARRTAAA |
Ga0210400_112552982 | 3300021170 | Soil | MSAKLDSGISRRRFLISTSMAATAGLLAPRDLFAQ |
Ga0210408_110537652 | 3300021178 | Soil | MSAKLDSGISRRGFLISTSMAATVGLLAPRDLFAQDDGLVQTARKTAAAA |
Ga0210396_115901041 | 3300021180 | Soil | MSTTLDSGISRRRFLISTSMAATVGLLAPRDLFAQDDGLVQTA |
Ga0213877_102125611 | 3300021372 | Bulk Soil | MSQKLDVGISRRSFLASASAAAAVAFVAPPRLFAQDDGLVQTARRTAATDKIT |
Ga0210394_100405505 | 3300021420 | Soil | MCPRLDSGISRRRFLISTSMAATVGLLAPRDLFAQDDGLVQTARKTAAAA |
Ga0210394_103704271 | 3300021420 | Soil | VGAKVDSGVSRRRFLVSTSVAAAVGLLARRDLFAQDDGLVQTARK |
Ga0210394_106964332 | 3300021420 | Soil | MSTKSDSGISRRRFLISTSMAATVGLLAPRDLFAQDDGLVQTARKTA |
Ga0210394_110221232 | 3300021420 | Soil | MSTKLDSGISRRRFLISTSMAATVGVLAPHDLFAQDDGLVQTARKTAAA |
Ga0210390_105131051 | 3300021474 | Soil | MTTELDNRISRRRFLASTSLATAVGLLVPRALFAG |
Ga0210402_106337712 | 3300021478 | Soil | MNTKDSAVSRRRFLVSASIATTAVILAPRRIFAQGDGLVQTARKTAANSTITVQKLRGSV |
Ga0210409_116948342 | 3300021559 | Soil | MRTKSDSGISRRRFLISTSKAATVGLLAPRDLFAQDDGLVQTARKTAA |
Ga0222728_11262921 | 3300022508 | Soil | MSAGLDSGISRRRFLISTSIAATVGVLAPPDLYAQDDGLVQTARRTAAAATIS |
Ga0242665_102524222 | 3300022724 | Soil | MSAKLDSGISRRGFLISTSMAATVGLLAPRDLFAQDDGLVQTAR |
Ga0207745_10186851 | 3300026889 | Tropical Forest Soil | MTTKLDVRISRRWFLTSASAATTVALLAPRKLFAQDEGLVQTARRTAAASTITVQ |
Ga0207852_10304681 | 3300026959 | Tropical Forest Soil | MTTKLDVRISRRWFLTSASAATTVALLAPRKLFAQDEGLVQTARRTAAASTI |
Ga0207817_10043961 | 3300026979 | Tropical Forest Soil | MTTKLDVRISRRWFLTSASAATTVALLAPRKLFAQDEGLVQTARRTAAASTITVQK |
Ga0208369_10334491 | 3300026998 | Forest Soil | MSTKLDSGISRRRFLISTSMAATVGLLAPRDLFAQDDGLVQTA |
Ga0209684_10572522 | 3300027527 | Tropical Forest Soil | MNASLDRGVSRRRFLAATSAAAGVAFLAPRQLFAQDTGLVATARRTAAAGNVTV |
Ga0209799_10397652 | 3300027654 | Tropical Forest Soil | MSTELAVRISRRNFLASASAASTMAWLAPSDLFSQGDGLVQTARRTAATDKI |
Ga0308309_110360561 | 3300028906 | Soil | MSTKSDSGISRRRFLISTSMAATVGLLAPRDLFAQDDGLVQTARKTAAAATI |
Ga0222749_102381022 | 3300029636 | Soil | MSTKSDSGISRRQFLISTSMAATVGLLAPRDLFAQDDGLVQ |
Ga0318573_107449191 | 3300031564 | Soil | MTTKLDVRVSRRCFLASASGATALAFVAPLKLFAEDDGLVQT |
Ga0310915_109314881 | 3300031573 | Soil | MSTELAARVSRRNFLASASAATTMAWLAPRKLFAQEEGLVQTARKTAATD |
Ga0318542_103402041 | 3300031668 | Soil | MTMKLDVRVSRRCFLASASGATALAFVAPLKLFAEDDGLVQ |
Ga0318561_106639531 | 3300031679 | Soil | MSAKLDVGISRRSFLASASAAAAVAFVAPRRLFAQDDGLVQTARRTASTDTVTVQK |
Ga0306917_102023291 | 3300031719 | Soil | MNSKPDRGISRRRFLASASMATSIALLAPRHLVTQNEGLVQTARKTAGAATIT |
Ga0306917_104394291 | 3300031719 | Soil | MSTKLDVGISRRSFLASASAAAAVAFVAPRRLFAQDDGLV |
Ga0306917_108118431 | 3300031719 | Soil | MTMKLDVRVSRRCFLASASGATALAFVAPLKLFAE |
Ga0306917_110770963 | 3300031719 | Soil | MNTKTDPGISRRRFLVSTSMATTGVLLAPSYVFAQGEGLVQTARKTAGAATIT |
Ga0306917_110934272 | 3300031719 | Soil | MSTELAVRVSRRNFLASASAATTIAWLAPRKLFAQEEGLV |
Ga0306918_100220811 | 3300031744 | Soil | MTTTLDVRISRRSFLASTIATTSVALMAPRQLYAQNDGL |
Ga0306918_113843061 | 3300031744 | Soil | MTTKLDDRISRRCFLASASAATTVALLAPRKLFAQNDGLVQTARR |
Ga0318502_102218161 | 3300031747 | Soil | MTTTLDVRISRRSFLASTIATTSVALMAPRQLYAQNDGLVQTARKTAAAA |
Ga0307475_101581581 | 3300031754 | Hardwood Forest Soil | MSAELDFGIPRRRFLMSTSMAATVGLLAPRDLFAQDDGLVQTAR |
Ga0307478_115636851 | 3300031823 | Hardwood Forest Soil | MSAKLDSGISRRRFLISTSMAATVGVLAPRDLFAQDDGLVQTARKTAASATITVQKLR |
Ga0310917_100053357 | 3300031833 | Soil | MTTKLDVRVSRRCFLASASGATALAFVAPLKLFAEDDGLVQTARR |
Ga0310917_108918832 | 3300031833 | Soil | MTMKLDVRVSRRCFLASASGATALAFVAPLKLFAEDDGLVQTARR |
Ga0318495_103831801 | 3300031860 | Soil | MTTILDVRISRRSFLASTIATTTVALMAPRQLFAQNDGLVQTARKAAAAATVT |
Ga0306919_104574191 | 3300031879 | Soil | MTMKLDVRVSRRCFLASASGATALAFVAPLKLFAEDD |
Ga0306919_112698602 | 3300031879 | Soil | MSTELAARVSRRNFLASASAATTMAWLAPRKLFAQEEGLVQTARKTAATDKI |
Ga0306925_103034841 | 3300031890 | Soil | MSTKLDVGISRRSFLASASAAAAVAFVAPRRLFAQDDGLVQTARRTASTDTVT |
Ga0306925_118891202 | 3300031890 | Soil | MSTELDVRISRRNFLASASAATTMAWLAPSKLFAQED |
Ga0310912_107099583 | 3300031941 | Soil | MNTKTDPGISRRRFLVSTSMATTGVLLAPSYVFAQGEGLVQTARKTAGAATITAQKL |
Ga0310913_109207222 | 3300031945 | Soil | MTMKLDVRVSRRCFLASASGATALAFVAPLKLFAED |
Ga0310910_100694251 | 3300031946 | Soil | MTTKLDDRISRRCFLASASAATTVALLAPRKLFAQNDGLVQ |
Ga0310910_101416101 | 3300031946 | Soil | MNTTLDVRISRRSLLASTIATTTVALVAPRQLFAQNDGLVQTARKTAAAAT |
Ga0310910_101480123 | 3300031946 | Soil | MNSKPDRGISRRRFLASASMATSIALLAPRHLVTQNEGLVQTARKTAGAATITVQKL |
Ga0310909_103709572 | 3300031947 | Soil | MSTKLDVGISRRSFLASASAAAAVAFVAPRRLFAQDDGLVQKARRTASTDKVTVQK |
Ga0310909_104523911 | 3300031947 | Soil | MSTELAVRVSRRNFLASASAATTIAWLAPRKLFAQEEGLVQTARKTAATD |
Ga0310909_106142553 | 3300031947 | Soil | MNARLEVEICRRSFLASASAAAAVALVAPRRLFAQNDGLVQTARRTASTDTVTVQKL |
Ga0306926_103416732 | 3300031954 | Soil | MSAKLDVGISRRSFLASASAAAAVAFVAPRRLFAQ |
Ga0307479_105839552 | 3300031962 | Hardwood Forest Soil | MSAGLDSGVSRRRFLICTSMAATVGVLAPRDLFAQDDGLVQTARK |
Ga0318531_103106092 | 3300031981 | Soil | MTTKLDVRVSRRCFLASASGATALAFVAPLKLFAEDDGLVQTARRTAVASTVTVQK |
Ga0318575_105082061 | 3300032055 | Soil | MTTILDVRISRRSFLASTIATTTVALTAPRQLFAQNDGLVQTARKTAAAATITAQKLRGN |
Ga0318533_112157652 | 3300032059 | Soil | MSAELAARTSRRNFLASASAATTIAWLAPSKLFAQEVGLV |
Ga0318540_102872351 | 3300032094 | Soil | MTTTLDVRISRRSFLASTIATTSVALMAPRQLYAQNDGLVQTARKTAAAATVTAQKLRDNIS |
Ga0306920_1001666651 | 3300032261 | Soil | MNARLEVEICRRSFLASASAAAAVALVAPRRLFAQNDGLVQTARRTAS |
Ga0310914_105656552 | 3300033289 | Soil | MNSKPDRGISRRRFLASASMATSIALLAPRHLVTQNEGLVQTARKTAGAATI |
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