Metagenome / Metatranscriptome Family F091060

Overview

Basic Information

• Family ID: F091060
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 108
• Average Sequence Length: 47 residues
• Representative Sequence: MEHGKPISATDSPLVDFDAVCQKVRAAVEPARAHAVSLHDENGDVLWL
• Number of Associated Samples: 92
• Number of Associated Scaffolds: 108

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 84.26 %
• % of genes near scaffold ends (potentially truncated): 100.00 %
• % of genes from short scaffolds (< 2000 bps): 94.44 %
• Associated GOLD sequencing projects: 87
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (75.000 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (14.815 % of family members)
• Environment Ontology (ENVO): Unclassified (24.074 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (52.778 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 28.95%
  β-sheet: 6.58%
  Coil/Unstructured: 64.47%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF02592	Vut_1	78.70
PF00202	Aminotran_3	1.85
PF00691	OmpA	1.85
PF05899	Cupin_3	0.93
PF07883	Cupin_2	0.93
PF00563	EAL	0.93
PF02348	CTP_transf_3	0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG1738	Queuosine precursor transporter YhhQ, DUF165 family	Translation, ribosomal structure and biogenesis [J]	78.70
COG1083	CMP-N-acetylneuraminic acid synthetase, NeuA/PseF family	Cell wall/membrane/envelope biogenesis [M]	0.93
COG1212	CMP-2-keto-3-deoxyoctulosonic acid synthetase	Cell wall/membrane/envelope biogenesis [M]	0.93
COG1861	Spore coat polysaccharide biosynthesis protein SpsF, cytidylyltransferase family	Cell wall/membrane/envelope biogenesis [M]	0.93
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.93
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.93
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.93
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.93

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	25.00 %
Unclassified	root	N/A	75.00 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	25.00 %
Unclassified	root	N/A	75.00 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	24.07 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.93 %
Unclassified	root	N/A	75.00 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	24.07 %
Unclassified	root	N/A	75.00 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	0.93 %

Level 5

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	15.74 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	0.93 %
Unclassified	root	N/A	75.00 %

Level 6

Name	Rank	Taxonomy	Distribution
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	15.74 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	0.93 %
Unclassified	root	N/A	75.00 %

Level 7

Name	Rank	Taxonomy	Distribution
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	15.74 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Unclassified	root	N/A	75.00 %

Level 8

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	0.93 %
Unclassified	root	N/A	75.00 %

Level 9

Name	Rank	Taxonomy	Distribution
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Unclassified	root	N/A	75.00 %

Level 10

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	0.93 %
Unclassified	root	N/A	75.00 %

Level 11

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	0.93 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Unclassified	root	N/A	75.00 %

Level 12

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	0.93 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Unclassified	root	N/A	75.00 %

Level 13

Name	Rank	Taxonomy	Distribution
eudicotyledons	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Unclassified	root	N/A	75.00 %

Level 14

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Gunneridae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae	0.93 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Unclassified	root	N/A	75.00 %

Level 15

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Pentapetalae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae	0.93 %
Unclassified	root	N/A	75.00 %

Level 16

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
rosids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids	0.93 %
Unclassified	root	N/A	75.00 %

Level 17

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
malvids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids	0.93 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Unclassified	root	N/A	75.00 %

Level 18

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Malvales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Malvales	0.93 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Unclassified	root	N/A	75.00 %

Level 19

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Malvaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Malvales → Malvaceae	0.93 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Unclassified	root	N/A	75.00 %

Level 20

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Grewioideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Malvales → Malvaceae → Grewioideae	0.93 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Unclassified	root	N/A	75.00 %

Level 21

Name	Rank	Taxonomy	Distribution
Apeibeae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Malvales → Malvaceae → Grewioideae → Apeibeae	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Unclassified	root	N/A	75.00 %

Level 22

Name	Rank	Taxonomy	Distribution
Corchorus	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Malvales → Malvaceae → Grewioideae → Apeibeae → Corchorus	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Unclassified	root	N/A	75.00 %

Level 23

Name	Rank	Taxonomy	Distribution
Corchorus olitorius	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Malvales → Malvaceae → Grewioideae → Apeibeae → Corchorus → Corchorus olitorius	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Unclassified	root	N/A	75.00 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2124908007|FWIRElOz_GKZ9IRQ02G2MRW	Not Available	505
2170459012|GOYVCMS01CRRT0	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	502
3300000567|JGI12270J11330_10124716	Not Available	1038
3300001356|JGI12269J14319_10366815	Not Available	504
3300001593|JGI12635J15846_10424386	Not Available	798
3300002245|JGIcombinedJ26739_101555190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	558
3300004080|Ga0062385_10559920	Not Available	716
3300004082|Ga0062384_101187809	Not Available	554
3300004092|Ga0062389_104524191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	523
3300004635|Ga0062388_100402215	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Malvales → Malvaceae → Grewioideae → Apeibeae → Corchorus → Corchorus olitorius	1190

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.37%
Host-Associated	Host-Associated	4.63%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	16.67%
Plants	Host-Associated → Plants	4.63%
Terrestrial	Environmental → Terrestrial	78.70%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	9.26%
Peat	Environmental → Terrestrial → Peat	19.44%
Peat Moss	Host-Associated → Plants → Peat Moss	3.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.93%
Sediment	Environmental → Aquatic → Sediment	7.41%
Soil	Environmental → Terrestrial → Soil	59.26%

Type

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	12.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	19.44%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.41%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	3.70%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.26%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.41%

Subtype

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.70%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	9.26%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.44%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.26%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	6.48%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	19.44%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.52%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.41%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	3.70%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%

Habitat

Habitat	Taxonomy	Distribution
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	4.63%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.78%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.93%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.70%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.78%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.63%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.85%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.93%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.78%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	3.70%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	14.81%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.85%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.78%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.85%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.85%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.70%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.11%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	7.41%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2124908007	Soil microbial communities from sample at FACE Site Metagenome WIR_ElevOz2	Environmental
2170459012	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO1O1 lysis Rhizosphere grass	Environmental
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FWIRElOz_03762840	2124908007	Soil	MDQGKQSSAMSPLVDFDAVCQKVREAIEPARVHAVSLHDNKGEVLWLTESSMGP
N56_03186500	2170459012	Grass Soil	MEHGKPLSAADGPLVDFDAVCQKVRAALEPARAHAISLHDAHGDLLWL
JGI12270J11330_101247161	3300000567	Peatlands Soil	MEQGKPFSASESPLVDFDGVCQKVRAAIDTTRVHAVSL
JGI12269J14319_103668152	3300001356	Peatlands Soil	MEQGKPFSASESPLVDFDGVCQKVRAAIDTTRVHAVSLHDEKGDVL
JGI12635J15846_104243862	3300001593	Forest Soil	MEHGKTISATENPLIDFDAICQKVRAAVEPARAHAVSLHDEH
JGIcombinedJ26739_1015551902	3300002245	Forest Soil	MEHGKPYSATQSPLVDFDAVCQNVRAAVEPARAYAVSLHDEQGDVLWLSES
Ga0062385_105599201	3300004080	Bog Forest Soil	MEHGKPYGATDSPLVDFDAVCQKVRAAVEPARAHAVSLHDETGDV
Ga0062384_1011878092	3300004082	Bog Forest Soil	MEQGKPFSTTESPLVDFDAVCQKMRAAIEPARAHAISLHDERGD
Ga0062389_1045241912	3300004092	Bog Forest Soil	MEQGNPFSAAESPLVDFDAVCKKVRAAVEPARAHAVSLHDENGEVLWLSESSMGP
Ga0062388_1004022151	3300004635	Bog Forest Soil	MDQGKPLMQSDSPLVDFDAVCQKVRAAVEPNRTHAVSLHDEAG
Ga0070713_1002167411	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MEHGKPLSAADGPLVDFDAVCQKVRAALEPARAHAISLHDARGDLLWLTESSMGPDEH
Ga0070679_1010073662	3300005530	Corn Rhizosphere	MEHGKPLSATDGPRVDFDAVCQQVRAAVEPARAQAISLHDE
Ga0070763_103554871	3300005610	Soil	MEHGKPFSATDGPLVDFDAVCQKVRAAVEPARAHAVSLHDEHGDVLWLSESSM
Ga0070763_109823541	3300005610	Soil	MEQGKPFGETESPLVDFDAVCQKVRTAVEPARAHAVSLHDEKGDVLWLSESSM
Ga0075029_1012496783	3300006052	Watersheds	MEQNKPFSGADSPPADFGSVCEKVRAALEPARVHAISIHDDKGD
Ga0075017_1007103782	3300006059	Watersheds	MELGKPFAATESSPVEFDAVCQKVRAAIEAARVHSVSLHDEKGDLLWLTESSMGPD
Ga0075017_1011920353	3300006059	Watersheds	MEQGSPSSATEQPLVDFDALCQKLRAAVEPARAHAVSMHDEHGDVLW
Ga0075019_109230402	3300006086	Watersheds	METGKHRTLTDSPPVDFDALCQKVRAALEPARAHSISLHDETGDLLWLTESSMGPD
Ga0075018_108137002	3300006172	Watersheds	MEHGKTFSTTDGPLVDFDAVCQKVRAAVEPARAHAVSLHDNRGEVLWLSESTM
Ga0070716_1007275352	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MEHGKPLSAADGPLVDFDAVCQKVRAALEPARAHAISLHDAHGDLL
Ga0099793_104903472	3300007258	Vadose Zone Soil	MEHGKPISATDNPLVDLDAVCQQLRAAVEPARAHAVSLHDEHGDLLWLSES
Ga0066793_103032072	3300009029	Prmafrost Soil	MEQGNPFSATEQSLVDFDALCQKVRAAVEPARAHAVSLHDEHGDVLW
Ga0099830_118736741	3300009088	Vadose Zone Soil	MDQGKQLSAMSPLVDFGAVCQRVREAVEPARVHAVSLHDNKGEVPWLTESSMGPDEHN
Ga0116228_106882822	3300009701	Host-Associated	MEPGKNLTANDAALVDYDGVCQKIRLAMEPMRAHAISLHDEEGDLLWLTESS
Ga0116227_109683062	3300009709	Host-Associated	MEQGKSFSTADSPPLDFDAVCQNVRAAMEPARAHAVSLHDRQGEVLWLSESSMGPDEHDAVRA
Ga0116227_114564062	3300009709	Host-Associated	MEQGKPISTADAPPLDFDAVCQNVRAAMEPARAHAVSLH
Ga0137397_109134261	3300012685	Vadose Zone Soil	MERGKPLMQSENPLVDFDAVCQNVRTAVEPNRTHAVSLHDESGEVLWLSESSM
Ga0137413_102626072	3300012924	Vadose Zone Soil	MEQGKPLSATDSPLVDFDAVCQKVRAAIEPARVHALSLHDEK
Ga0137416_104988021	3300012927	Vadose Zone Soil	MEHGKPISATDNPLVDFGAVCQQVRAAVEPARAHAVSLHDEHGDVLWL
Ga0137410_100899991	3300012944	Vadose Zone Soil	MEHGKPFSAADGPLVDFDAVCQKVRAALEPARAHAISLHDEHGD
Ga0137410_103657741	3300012944	Vadose Zone Soil	MEQGKPISATDNPLVDFDAVCQQVRAAVEPARAHAVSLHD
Ga0181532_101488113	3300014164	Bog	MEQGKPFSATESPLVDFDAVCQKVRAAVEPARAHAVSLH
Ga0181534_101265901	3300014168	Bog	MEHGKPHSSTDNPLVDFDAVCQKVRAAVEPARAHAVSLHDEHGDLLWLSESSM
Ga0181534_105038202	3300014168	Bog	MVLTSTAAGSMEQGKPLSASQSPLVDFDAVCQKVRAALEPARAHAVSLHDEKGDVLWLSESSM
Ga0182016_105167072	3300014493	Bog	MEQGKPFSATESPLVDFDAVCQKVRAALEPARAHAVSLHDESGDLLWLSESSMGPDEH
Ga0182015_101070043	3300014495	Palsa	MEQGKPLNVMESPLVDFDAVCQKVRAAVEPARAHAVSLHDENGDVLWLSESSMGPD
Ga0182015_109225582	3300014495	Palsa	MEHGTPFSATESPLVDFDAVCQKVRTAVEPARAHAVSLH
Ga0182021_113281202	3300014502	Fen	MEHGKPFSAADGPLVDFDAVCQKVRAAVEPARAHAVSLHDEH
Ga0137414_11054611	3300015051	Vadose Zone Soil	MEQGKPLMQSDSPLVDFDAVCQKVRAAVEPNRAHAVVSLHDEAGE
Ga0167650_10950472	3300015203	Glacier Forefield Soil	MEHGNPNSATDSPLVDYDAVCQKVRAAVEPNRVHAVSLHDEHGDVLWLS
Ga0137418_106955372	3300015241	Vadose Zone Soil	MEQGKPLSATDSPLVDFDAVCQKVRAAIEPARVHALSLHDEKGDVLWLTE
Ga0137409_102503413	3300015245	Vadose Zone Soil	MEHGKPFSAADGPLVDFDAVCQKVRAALEPARAHAISLHDEHGDLLW
Ga0187847_103229442	3300017948	Peatland	MEQGKPFNGPRSPFVDFDGVCQKVRAAVEPARALAVSLHDEKGDVLWLTESSMGPDEH
Ga0187875_105456342	3300018035	Peatland	MEQGKPFSATESPLVDFDAVCQKVRAAVEPARAHAVSLHDQNADVLWLSE
Ga0187890_103374712	3300018044	Peatland	MEQGKPFRTTQSPLVDFDAVCQKVRAAIEPARAHAISLHDERGDVLWLSESTMGPD
Ga0187772_101112951	3300018085	Tropical Peatland	MEQGKPFTETESPLVDFDAVCQKVRAAVEPARAHAVSLHDEKGD
Ga0182025_11467621	3300019786	Permafrost	MEQGKPLMQSNSPLVDFDGICEKVRAAIEPNRTHAVSLHDEAG
Ga0182025_13802011	3300019786	Permafrost	GKPLSSSDTAPVDYGAVCQNVRAALEPARAHAISLHDSWAMFCG
Ga0193716_100192213	3300020061	Soil	MEQGTPLMQSDSPLVDFDTVCQKVRAAVEPNRTHAVSLH
Ga0210403_112353041	3300020580	Soil	MEHGKPFSTTDGPLVDFDAVCQKVRAAVEPARAHAVSLHD
Ga0210395_109152141	3300020582	Soil	MDQGKPLTATDSPLVDFDAVCQKVRAAVEPARTHAVSLHDELGDVLWLSE
Ga0210395_110499621	3300020582	Soil	MDQGKPLMATDSPLVDFDAVCQKVRAAVEPARTHAVSLHDELGDVLWLSESSMGPD
Ga0210395_114205922	3300020582	Soil	MEQGKPFSETESPLVDFDAVCQKVRTAVEPARAHAVSLHDEKGDVLWLS
Ga0179596_101267522	3300021086	Vadose Zone Soil	MEHGKPISATDNPLVDFDAVCQKVRAAVEPARAYAVSLHDEHGDVLWLSESSM
Ga0210406_106107081	3300021168	Soil	MERGKPLMQSDSPLVDFDAVCQKVRAAVEPNRTHAVSL
Ga0210393_102491221	3300021401	Soil	MEQGKPLMQSESPLVDFDAICQKVRAAVEPNRTHAVSLHDETGD
Ga0210393_116968061	3300021401	Soil	MEHGKPFSTTDGPLVDFDAVCQKVRAAVEPARAHAVSLH
Ga0210385_109396492	3300021402	Soil	MEQGKPFSATESPLVDFDAVCQRVRAAVEPARAHAV
Ga0210397_111800222	3300021403	Soil	MEQGKPLMQSESPLVDFDAVCQKVRAAVEPNRTHAVSLHDETGDVLWLSESS
Ga0210386_114239981	3300021406	Soil	MEHGKPISATDHPLVDFDAVCQKVRAAVEPARAYAVSLHDEHGDVLWLSESSMG
Ga0210390_100458555	3300021474	Soil	MEQGKPLMQSESPLVDFDAICQKVRAAVEPNRTHAVSLHDETGDVLWLSESS
Ga0210392_102838851	3300021475	Soil	MERGKPLMQSDSPLVDFDAVCQKVRAAVEPNRTHAVSLHDESGDVLWLSESSMG
Ga0210410_102941771	3300021479	Soil	MEHGKPFSTTDGPLVDFDAVCQKVRAAVEPARAHAVSLHDEHGDVLWLS
Ga0210409_100363681	3300021559	Soil	MDQGKPLMATDSPLVDFDAVCQKVRAAVEPARTHAVSLHDELG
Ga0210409_108846491	3300021559	Soil	MDQGKQSSAMSPLVDFDAVCQKVREAIEPARVHAVSLHDNKGEV
Ga0207665_104101891	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MEHGKPLSAADGPLVDFDAVCQKVRAALEPARAHAISL
Ga0209111_10340901	3300027058	Forest Soil	MERGRPLMQSESPLVDFDAVCQKVRAAIEPNRTHAISLHDEAGEM
Ga0208724_10370571	3300027064	Forest Soil	MEQGKPLNVMESPLVDFDAVCQKVRAAVEPARAHAVSLHDENGDVLWLSESSMGP
Ga0209115_10926102	3300027567	Forest Soil	MEQGKPLMQSESPLVDFDAICQKVRAAVEPNRTHAVSLHDETGDVLWLSES
Ga0207826_12088432	3300027680	Tropical Forest Soil	MATDSPLVDFDAICQRVRAAMEPNRTHAISLHDET
Ga0209611_104394301	3300027860	Host-Associated	MDQGKRLTASGAPLVHYDAVCESVRAALEPARAHAISLHDVKGD
Ga0209380_104037221	3300027889	Soil	MDQGKPLMATDSPLVDFDAVCQKVRAAVEPARTHAVSLHDELGDVLWLSESSMGPDEH
Ga0209068_109471562	3300027894	Watersheds	MEQGSPSSATQQPLVDFDALCQNLRAAVEPARAHAVSM
Ga0209488_110670932	3300027903	Vadose Zone Soil	MEHGKPISATDSPLVDFDAVCQKVRAAVEPARAHAVSL
Ga0209698_110639262	3300027911	Watersheds	MEQNKPFSGADSPPADFGSVCEKVRAALEPARVHAISIHDDKGDVLWL
Ga0209069_110546801	3300027915	Watersheds	MEHGKPFSTADAPFVDFDAVCQKLRTAVEPARAHAVSLH
Ga0265355_10155932	3300028036	Rhizosphere	MEQGKPLMQSESPLVDFDAVCQKVRAAVEPNRTHAVSLHDETGDVL
Ga0302219_104541592	3300028747	Palsa	MEQGKPLNVMESPLVDFDAVCQKVRAAVEPARARSEE
Ga0302234_104176171	3300028773	Palsa	MEHGKPISATDSPLVDFDAVCQKVRAAVEPARAHAVSLHDENGDVLWL
Ga0302157_106095751	3300028813	Bog	MEQGNPSTAPDGALVDFDAVCQRVRAAMEPARAHAVSLHDERGDILWLTESSMGPDE
Ga0308309_108637831	3300028906	Soil	MEQGKPFSTTQSPLVDFDAVCQKVRTAVEPARAHAVSLHDEKGDVLWLSESS
Ga0222749_106608602	3300029636	Soil	MDQGKPLTATDSPLVDFDAVCQKVRAAVEPARTHA
Ga0311326_102987152	3300029917	Bog	MEHGKPISATDSPLVDFDAVCHKVRAALEPARAHAVSLHDEHGDV
Ga0311330_110681441	3300029945	Bog	MEPGNQLNVSDAPLVDFDGVCQKIRAAVEPMRVHAVSLHDEEGDLLWLTESSMGPDEH
Ga0311346_111412052	3300029952	Bog	MENGIPFGATDGALVDFDAVCQKVRAAVEPARAHAVSLHDEHGEV
Ga0311331_114079132	3300029954	Bog	MEHGKSRSASEHSLDFGGVCQNIRAAVDSIRVHAVSLHDEKGKVLWMT
Ga0311338_112012451	3300030007	Palsa	MEQGKPLNVMESPLVDFDAVCQKVRAAVEPARAHAVS
Ga0302182_103067472	3300030054	Palsa	MEQGNPLTATDGALVNFDAVCQRVRAAVEPARAHSVSLHDERGDVLWLT
Ga0311353_105881282	3300030399	Palsa	MDHGKPFSATDGPLVDFDAVCQKVRTAVEPARAHAVS
Ga0311353_108085462	3300030399	Palsa	MEQGKPFSAMQSPLVDFDAVCQKVRAAVEPARAHAVSLHDENGDVLWLSESS
Ga0311353_113636931	3300030399	Palsa	MDQVKPVSAPESPLIDFDAVCQKVRAAIDSVRIYS
Ga0311372_122850282	3300030520	Palsa	MEQGKPLMQSESPLVDFDAICQKVRAAVEPNRTHAVSLHDETGDVLWLSESSM
Ga0311357_105071653	3300030524	Palsa	MEQGKPFSAMQSPLVDFDAVCQKVRAAVEPARAHAVSLHDEN
Ga0311357_114974371	3300030524	Palsa	MEHGKPISATDSPLVDFDAVCQKIRAAVEPARAHAVSLHDEHGDVLW
Ga0311354_108176692	3300030618	Palsa	MEQGKPFSAMQSPLVDFDAVCQKVRAAVEPARAHAVSLHDENGDVLWL
Ga0302316_104060453	3300030646	Palsa	MEQGKPLNVMESPLVDFDAVCQKVRAAVEPARAHAVSLHDEHGDVL
Ga0302311_102527313	3300030739	Palsa	MEQGKPLMQSESPLVDFDAVCQKVRAALEPNRTHAVSLHDE
Ga0265753_10787512	3300030862	Soil	MEQGKPFSATDGPLVDYDAVCQKVRVAVEPARAHAVS
Ga0302314_112392162	3300030906	Palsa	MEHGKPISATDSPLVDFDAVCQKIRAAVEPARAHAVSLHDEHGDVLWLSESSM
Ga0302314_117859131	3300030906	Palsa	MDQGKPLLASDSPLVDFNAICQKVRAAVEPARAHAVSL
Ga0170823_107089811	3300031128	Forest Soil	MERGKPLMQSESPLVDFDAVCQKVRAAVEPNRTHAVSLHD
Ga0170824_1092214151	3300031231	Forest Soil	MEQGKPLMQSESPLVDFDAVCQKVRAAVEPNRTHAVSLHDETGDVLWLSESSMGPDE
Ga0302324_1011857812	3300031236	Palsa	MEHGKPFSATDSPLVDFDAVCQKVRAAVEPARAHAVSLHDENGDVLWLSESSMG
Ga0310686_1097957892	3300031708	Soil	MEHGKPFSTTDGPLVDFDAVCQKVRAAVEPARAHAVSLHDELGDVLW
Ga0310686_1178067631	3300031708	Soil	MDHGKPFSATDGPLVDFDAVCQKVRAAVEPARAHAVSLHDEHGDVLWLS
Ga0307476_106296981	3300031715	Hardwood Forest Soil	MDQGKQFSAMSPLVDFDAVCQKVREAIEPARIHAVSL
Ga0307474_109661992	3300031718	Hardwood Forest Soil	MEQGKPLMQSDSPLVDFGAVCEKVRAAVEPNRTHAVSLHDEAGDV
Ga0307477_100417021	3300031753	Hardwood Forest Soil	MEHGKPISATDNPLVDFDVVCQKVRAAVEPARAHA