Metagenome / Metatranscriptome Family F091036

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091036
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	66 residues
Representative Sequence	MKATLLHRAGSIEKGATVEIGGKTGVNEQRGPADCGGASTTSAPVYAVTGEDGQTEIVDTRDLKIVR
Number of Associated Samples	60
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	87.96 %
% of genes near scaffold ends (potentially truncated)	24.07 %
% of genes from short scaffolds (< 2000 bps)	74.07 %
Associated GOLD sequencing projects	50
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (62.963 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil (34.259 % of family members)
Environment Ontology (ENVO)	Unclassified (34.259 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.630 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 3.16% β-sheet: 36.84% Coil/Unstructured: 60.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
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SCOP family	SCOP domain	Representative PDB	TM-score
b.34.4.4: Electron transport accessory proteins	d3a8gb_	3a8g	0.7
b.34.4.4: Electron transport accessory proteins	d3a8gb_	3a8g	0.7
b.34.4.4: Electron transport accessory proteins	d3hhtb_	3hht	0.69
b.34.4.4: Electron transport accessory proteins	d3hhtb_	3hht	0.69
b.34.2.1: SH3-domain	d1k9ab1	1k9a	0.62
b.34.2.1: SH3-domain	d1k9ab1	1k9a	0.62
b.34.20.1: YorP-like	d2heqa1	2heq	0.61
b.34.20.1: YorP-like	d2heqa1	2heq	0.61
b.34.2.0: SH3-domain	d1yn8a1	1yn8	0.6
b.34.2.0: SH3-domain	d1yn8a1	1yn8	0.6

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF03861	ANTAR	10.19
PF00479	G6PD_N	6.48
PF05239	PRC	3.70
PF00140	Sigma70_r1_2	3.70
PF03734	YkuD	3.70
PF07883	Cupin_2	1.85
PF01699	Na_Ca_ex	1.85
PF03706	LPG_synthase_TM	1.85
PF03631	Virul_fac_BrkB	1.85
PF04343	DUF488	1.85
PF07366	SnoaL	0.93
PF02781	G6PD_C	0.93
PF10099	RskA	0.93
PF04203	Sortase	0.93
PF01565	FAD_binding_4	0.93
PF04972	BON	0.93
PF00118	Cpn60_TCP1	0.93
PF14659	Phage_int_SAM_3	0.93
PF00174	Oxidored_molyb	0.93
PF12680	SnoaL_2	0.93
PF14267	DUF4357	0.93
PF01292	Ni_hydr_CYTB	0.93
PF01145	Band_7	0.93
PF06210	DUF1003	0.93
PF03320	FBPase_glpX	0.93
PF00072	Response_reg	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG3707	Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains	Transcription [K]	10.19
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	7.41
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	3.70
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	3.70
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	3.70
COG0387	Cation (Ca2+/Na+/K+)/H+ antiporter ChaA	Inorganic ion transport and metabolism [P]	1.85
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	1.85
COG0530	Ca2+/Na+ antiporter	Inorganic ion transport and metabolism [P]	1.85
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	1.85
COG3189	Uncharacterized conserved protein YeaO, DUF488 family	Function unknown [S]	1.85
COG4420	Uncharacterized membrane protein	Function unknown [S]	0.93
COG4117	Thiosulfate reductase cytochrome b subunit	Inorganic ion transport and metabolism [P]	0.93
COG3915	Uncharacterized conserved protein	Function unknown [S]	0.93
COG3764	Sortase (surface protein transpeptidase)	Cell wall/membrane/envelope biogenesis [M]	0.93
COG3658	Cytochrome b subunit of Ni2+-dependent hydrogenase	Energy production and conversion [C]	0.93
COG3038	Cytochrome b561	Energy production and conversion [C]	0.93
COG2864	Cytochrome b subunit of formate dehydrogenase	Energy production and conversion [C]	0.93
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	0.93
COG1969	Ni,Fe-hydrogenase I cytochrome b subunit	Energy production and conversion [C]	0.93
COG1494	Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase or related protein	Carbohydrate transport and metabolism [G]	0.93
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.96 %
Unclassified	root	N/A	37.04 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.96 %
Unclassified	root	N/A	37.04 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.96 %
Unclassified	root	N/A	37.04 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	49.07 %
Unclassified	root	N/A	37.04 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	47.22 %
Unclassified	root	N/A	37.04 %
Candidatus Dormibacteraeota	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.04 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	24.07 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	4.63 %
unclassified Candidatus Dormibacteraeota	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.04 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	23.15 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3.70 %
Candidatus Dormibacteraeota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.04 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	23.15 %
Conexibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae	0.93 %
Candidatus Dormibacteraeota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.04 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	23.15 %
Conexibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter	0.93 %
Candidatus Dormibacteraeota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.04 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	23.15 %
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	0.93 %
Candidatus Dormibacteraeota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c0682434	Not Available	655	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100509957	Not Available	731	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100511130	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	972	Open in IMG/M
3300000955\|JGI1027J12803_107801135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2432	Open in IMG/M
3300001418\|JGI20188J14859_1017286	Not Available	792	Open in IMG/M
3300004479\|Ga0062595_100095440	Not Available	1561	Open in IMG/M
3300004479\|Ga0062595_100325648	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1053	Open in IMG/M
3300004479\|Ga0062595_100372979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1007	Open in IMG/M
3300004479\|Ga0062595_101593782	Not Available	608	Open in IMG/M
3300004479\|Ga0062595_102402541	Not Available	523	Open in IMG/M
3300005329\|Ga0070683_100954345	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300005336\|Ga0070680_100848569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	787	Open in IMG/M
3300005336\|Ga0070680_101085220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	692	Open in IMG/M
3300005366\|Ga0070659_101488496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	603	Open in IMG/M
3300005366\|Ga0070659_101924580	Not Available	530	Open in IMG/M
3300005434\|Ga0070709_10751017	Not Available	762	Open in IMG/M
3300005434\|Ga0070709_10857881	All Organisms → cellular organisms → Bacteria → Terrabacteria group	716	Open in IMG/M
3300005434\|Ga0070709_11453252	Not Available	556	Open in IMG/M
3300005435\|Ga0070714_100410473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1282	Open in IMG/M
3300005435\|Ga0070714_100673922	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	997	Open in IMG/M
3300005435\|Ga0070714_101421217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	677	Open in IMG/M
3300005435\|Ga0070714_101916823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	578	Open in IMG/M
3300005436\|Ga0070713_100068504	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2990	Open in IMG/M
3300005436\|Ga0070713_100225060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1703	Open in IMG/M
3300005436\|Ga0070713_101350874	Not Available	691	Open in IMG/M
3300005439\|Ga0070711_101634027	Not Available	564	Open in IMG/M
3300005518\|Ga0070699_100232214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1645	Open in IMG/M
3300005529\|Ga0070741_10004141	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	34345	Open in IMG/M
3300005529\|Ga0070741_10028407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	8020	Open in IMG/M
3300005529\|Ga0070741_10028646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	7964	Open in IMG/M
3300005529\|Ga0070741_10035205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6731	Open in IMG/M
3300005529\|Ga0070741_10046340	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5416	Open in IMG/M
3300005529\|Ga0070741_10048223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	5242	Open in IMG/M
3300005529\|Ga0070741_10050452	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	5063	Open in IMG/M
3300005529\|Ga0070741_10081848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3543	Open in IMG/M
3300005529\|Ga0070741_10226621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1798	Open in IMG/M
3300005529\|Ga0070741_10336921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1403	Open in IMG/M
3300005529\|Ga0070741_10421708	Not Available	1222	Open in IMG/M
3300005529\|Ga0070741_10703770	All Organisms → cellular organisms → Bacteria	891	Open in IMG/M
3300005530\|Ga0070679_101811973	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	559	Open in IMG/M
3300005532\|Ga0070739_10000402	All Organisms → cellular organisms → Bacteria	84438	Open in IMG/M
3300005532\|Ga0070739_10011880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8151	Open in IMG/M
3300005532\|Ga0070739_10364828	Not Available	678	Open in IMG/M
3300005533\|Ga0070734_10120460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1533	Open in IMG/M
3300005534\|Ga0070735_10618744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	642	Open in IMG/M
3300005537\|Ga0070730_10347410	Not Available	966	Open in IMG/M
3300005538\|Ga0070731_10427123	Not Available	881	Open in IMG/M
3300005538\|Ga0070731_10438046	Not Available	869	Open in IMG/M
3300005538\|Ga0070731_10538978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	777	Open in IMG/M
3300005542\|Ga0070732_10002166	All Organisms → cellular organisms → Bacteria	10673	Open in IMG/M
3300005542\|Ga0070732_10045796	All Organisms → cellular organisms → Bacteria	2521	Open in IMG/M
3300005542\|Ga0070732_10067740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2076	Open in IMG/M
3300005542\|Ga0070732_10202089	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1187	Open in IMG/M
3300005542\|Ga0070732_10387177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	843	Open in IMG/M
3300005542\|Ga0070732_10821533	Not Available	567	Open in IMG/M
3300006028\|Ga0070717_10591654	All Organisms → cellular organisms → Bacteria	1006	Open in IMG/M
3300006806\|Ga0079220_11546242	Not Available	572	Open in IMG/M
3300006903\|Ga0075426_11477799	Not Available	517	Open in IMG/M
3300009162\|Ga0075423_11424547	Not Available	742	Open in IMG/M
3300010371\|Ga0134125_10342165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1660	Open in IMG/M
3300010396\|Ga0134126_10458977	All Organisms → cellular organisms → Bacteria	1473	Open in IMG/M
3300010396\|Ga0134126_11009487	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	931	Open in IMG/M
3300010396\|Ga0134126_12301449	Not Available	587	Open in IMG/M
3300010880\|Ga0126350_11419761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	796	Open in IMG/M
3300011994\|Ga0120157_1088776	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	617	Open in IMG/M
3300012204\|Ga0137374_10560984	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300012206\|Ga0137380_10737544	Not Available	853	Open in IMG/M
3300012207\|Ga0137381_10787890	Not Available	824	Open in IMG/M
3300012350\|Ga0137372_10848364	Not Available	653	Open in IMG/M
3300012353\|Ga0137367_10818364	Not Available	646	Open in IMG/M
3300012354\|Ga0137366_11191755	Not Available	518	Open in IMG/M
3300012355\|Ga0137369_10837684	Not Available	624	Open in IMG/M
3300012469\|Ga0150984_101159947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	604	Open in IMG/M
3300012469\|Ga0150984_120190562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	559	Open in IMG/M
3300012532\|Ga0137373_11307867	Not Available	504	Open in IMG/M
3300013307\|Ga0157372_10870330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1046	Open in IMG/M
3300014058\|Ga0120149_1062353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	957	Open in IMG/M
3300014495\|Ga0182015_11018730	Not Available	512	Open in IMG/M
3300014497\|Ga0182008_10012578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4467	Open in IMG/M
3300014497\|Ga0182008_10097886	Not Available	1448	Open in IMG/M
3300014497\|Ga0182008_10664936	Not Available	591	Open in IMG/M
3300015261\|Ga0182006_1019523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2852	Open in IMG/M
3300019279\|Ga0184642_1505205	Not Available	627	Open in IMG/M
3300019888\|Ga0193751_1022725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3061	Open in IMG/M
3300019888\|Ga0193751_1026998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2747	Open in IMG/M
3300020069\|Ga0197907_10335782	Not Available	634	Open in IMG/M
3300025625\|Ga0208219_1002529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6472	Open in IMG/M
3300025625\|Ga0208219_1019114	All Organisms → cellular organisms → Bacteria	2037	Open in IMG/M
3300025664\|Ga0208849_1003862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6923	Open in IMG/M
3300025906\|Ga0207699_10601314	Not Available	801	Open in IMG/M
3300025912\|Ga0207707_10193751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1773	Open in IMG/M
3300025916\|Ga0207663_10481999	Not Available	961	Open in IMG/M
3300025916\|Ga0207663_11567523	Not Available	530	Open in IMG/M
3300025928\|Ga0207700_10012789	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5427	Open in IMG/M
3300026078\|Ga0207702_11537190	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300027773\|Ga0209810_1000326	All Organisms → cellular organisms → Bacteria	116493	Open in IMG/M
3300027773\|Ga0209810_1000507	All Organisms → cellular organisms → Bacteria	84460	Open in IMG/M
3300027826\|Ga0209060_10086611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1472	Open in IMG/M
3300027842\|Ga0209580_10009709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4129	Open in IMG/M
3300027842\|Ga0209580_10044246	All Organisms → cellular organisms → Bacteria	2060	Open in IMG/M
3300027842\|Ga0209580_10063493	All Organisms → cellular organisms → Bacteria	1743	Open in IMG/M
3300027842\|Ga0209580_10085965	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1509	Open in IMG/M
3300027842\|Ga0209580_10558856	Not Available	568	Open in IMG/M
3300027869\|Ga0209579_10179330	Not Available	1133	Open in IMG/M
3300027869\|Ga0209579_10280704	Not Available	897	Open in IMG/M
3300031670\|Ga0307374_10085186	All Organisms → cellular organisms → Bacteria	2869	Open in IMG/M
3300031716\|Ga0310813_11338806	Not Available	663	Open in IMG/M
3300031754\|Ga0307475_10238631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1456	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.89%
Host-Associated	Host-Associated	11.11%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.96%
Plants	Host-Associated → Plants	11.11%
Aquatic	Environmental → Aquatic	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.19%
Freshwater	Environmental → Aquatic → Freshwater	0.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.74%
Loam	Environmental → Terrestrial → Soil → Loam	20.37%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.48%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.70%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.93%
Clay	Environmental → Terrestrial → Soil → Clay	0.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	50.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	20.37%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.48%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.56%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	5.56%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.70%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.93%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	34.26%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	12.04%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.63%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.63%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.70%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	3.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	3.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.78%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.85%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.85%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.93%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001418	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005532	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011994	Permafrost microbial communities from Nunavut, Canada - A7_65cm_12M	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014058	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0.25M	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015261	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG	Host-Associated	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025625	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025664	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027773	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300031670	Soil microbial communities from Risofladan, Vaasa, Finland - OX-3	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_06824342	2228664022	Soil	VKAELLHEAGSIDKGAIVEVDGKKGVNDERDPEDCGGASTISAPVYAVTGEDGQTEIVDTRDLKIVR
INPhiseqgaiiFebDRAFT_1005099572	3300000364	Soil	MKATLLHQAGTIGKGATVDVDGKTGANDKRGPDACGGASTISAPVYAITDEDGHTENVDTRDLTIVR*
INPhiseqgaiiFebDRAFT_1005111301	3300000364	Soil	VKAELLHEAGSIDKGAIVEVDGKKGVNDERDPEDCGGASTISAPVYAVTGEDGQTEIVDTRDLKIVR*
JGI1027J12803_1078011351	3300000955	Soil	VKAELLHEAGSIDKGAIVEVDGKKGVNDERDPEDCGGASTISAPVYAVTGEDGQTEIVD
JGI20188J14859_10172862	3300001418	Arctic Peat Soil	MRAKLLHRAGSIEKDATVEIGGKKGVNEQRGPEDCGGASTTSAPVYAVTGEDGQTEIVDTRDLKIVR*
Ga0062595_1000954403	3300004479	Soil	MRAKLLHRAGSIEKGATVEVGGKKGVNEQRGPEDCGGASTISAPVYAVTGEDGQTEIVDTRDLKIIR*
Ga0062595_1003256482	3300004479	Soil	GNVEKGATVEVGAQTGTNEHRVTEDVGGASTTAAPVYAVTDEEGQTEKVDTRDMKVER*
Ga0062595_1003729792	3300004479	Soil	MRATLLRRAGSIEKDATVEIGGKTGVNQQRGPEDGGGASTTSAPGYVVTGEHGQTEIVDTRELKIVR*
Ga0062595_1015937822	3300004479	Soil	MKATLLHRAGSIDKGATVEIGGKKGMNEQRGPENCGGASTTSAPVYAVIGEDGQTEIVDTRDLKIVR*
Ga0062595_1024025411	3300004479	Soil	MKAKLLHQAGKIKKGATVDVVGKTGANDKRGAEDRGGASTTSAPVYAITDKDGQTENVDTRDLT
Ga0070683_1009543452	3300005329	Corn Rhizosphere	MKAKLLHEAGSIEDGATVEVSTKVGHNEQRDVEDVGGASTTPAPVYSVTDKDGNTEEVDTRDLKIIP*
Ga0070680_1008485692	3300005336	Corn Rhizosphere	MKATLLHRAGSIEKGATVEIGGKTGVNEQRGPADCGGASTTSAPVYAVTGEDGQTEIVDTRDLKIVR*
Ga0070680_1010852202	3300005336	Corn Rhizosphere	MRATLLHRAGSIEKDATVEIGGKTGVNQQRGPEDCGGASTTSAPVYFVTGEDGQTETVDTRDMKIVR*
Ga0070659_1014884962	3300005366	Corn Rhizosphere	AMKATLLHQAGNIKEGATVDLGGKTGTNDERGPDDLGGASTTSAPVYAITDKDGQTEKVDTRDLTIVR*
Ga0070659_1019245801	3300005366	Corn Rhizosphere	MKATLLHQAGKIQKGATVDLGCRTGTNDARSPDDLGRASTTSAPVYAITDEHGQTANVDTRDLRIVR*
Ga0070709_107510171	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKATLLQQAGNIKAGTTVEVGSRTGANDKRRPDERGRAGATSAPVYAITDKDGQTENVDTRDLTIIR*
Ga0070709_108578811	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MRATLLRRAGSIEKDATVEIGGKTGVNQQRGPEDGGGASTTSAPGYVVTGERGQTEIVDTRELKIVR*
Ga0070709_114532521	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKATLLHQAGKIRKGATVDLGCKTGTNDARGPDDLGGASATSAPVYAITDEHGQTANVDTRDLRIVR*
Ga0070714_1004104731	3300005435	Agricultural Soil	LLHQAGKIRKGATVDLGCKTGTNDARGPDDLGGASTTSAPVYAITDEHGHTASVDTRDLTIVR*
Ga0070714_1006739222	3300005435	Agricultural Soil	MKATLLHQAGKIKKGATVDLGCRTGTNNARSPDDLGGASTTTAPVYAITDEHGQTANVDTRDLT
Ga0070714_1014212172	3300005435	Agricultural Soil	MRATLLHRAGSIAKGATVEIDGKQGMNEQRSAEDCGGASSTPAPVYAVTGEDGQREIVDTRDLKILR*
Ga0070714_1019168231	3300005435	Agricultural Soil	KGAMVEVGGKTGVNHERRPDDCGGANTISAPMYAVTDEDGQTEIVDTRDLQIVR*
Ga0070713_1000685043	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MRATLLRRAGSIEKDAAVEIGGKTGVNQQRGPEDGGGASTTSAPVYVVTGERGQTEIVDTRELKIVR*
Ga0070713_1002250602	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MRATLWHRAGSIAKGATVEIDGKQGMNEQRSAEDCGGASSTPAPVYAVTGEDGQREIVDTRDLKILR*
Ga0070713_1013508741	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MKATLLHQAGKIRKGATVDLGCKTGTNDARGPDDLGGASTTSAPVYAITDEHGHTASVDTRD
Ga0070711_1016340271	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MKATLLHEAGNIKEGATVDVVGRTGTNDERGPDDIGGASTISAPVYVITDKDGHSENVD
Ga0070699_1002322141	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MRATLLRRAGSIEKDATVEIGGKTGVNQLRGPEDGGGASTTSAPGYVVTGEHGQTEIVDTRELKIVR*
Ga0070741_100041413	3300005529	Surface Soil	MKATLLHRAGNIKEGATVDLGGKTGTNGERGPDDVGGASTTSAPVYAITDKDGQTENVDTRDLKIVR*
Ga0070741_100284074	3300005529	Surface Soil	MKATLLHQAGNIKKGATVDLGGKTGTNDERGPDDLGGASTTSAPVYAITDEDGQTENVDTRDLTIVR*
Ga0070741_100286466	3300005529	Surface Soil	MKATLLHQAGNIEEGATVDLGGKTGTNDERGPDALGGASTTSAPVYAITDKDGQTENVDTRDLTIVR*
Ga0070741_100352053	3300005529	Surface Soil	MRATLLHRAGSIEKDATVEIGGKTGVNQQRGPEDCGGASTTSAPVYVVTGEDGQTETVDTRDMKIVR*
Ga0070741_100463402	3300005529	Surface Soil	MKARLLHEAGSINKGAMVEVGGKKGVNHERRPDDRGGANTISAPVYAVTDEDGQTEIVDTRDLQIVR*
Ga0070741_100482233	3300005529	Surface Soil	MKATLLHQAGRIKKGATVDLGGKTGTNDERGPDDLGGASTTSAPVYAITDKDGQSENVDTRDLTIVR*
Ga0070741_100504524	3300005529	Surface Soil	MKAKLLRKAGGIKKGALVEIAGKTGVNDSRGGSTTSAPVYAVTDEDGQTENVDTRDLKVLR*
Ga0070741_100818485	3300005529	Surface Soil	MKAKRLRKAGEIEQGAIVEVGGKTGVNDQRGPEDLGGVSATSAPVYAITDKDGQAENVDTRDLTIVR*
Ga0070741_102266213	3300005529	Surface Soil	MRAKLLHQAGSIKRGATVEVRRKSGENDKRGREDCGGASTTSAPVYTVTGEDGQTENVDTRDLQIVR*
Ga0070741_103369212	3300005529	Surface Soil	MKATLLHQAGKIKKGETVDLGAKIGTNDERGPDDLGGASTTSAPVYAITDKGGQTENVDTRDLTIVR*
Ga0070741_104217081	3300005529	Surface Soil	MKATLLHQAGNIKEGATVDLGGKTGTNEKRGPDDLGGASTTSAPVYAITDKDGQTENVDTRDLTIVR*
Ga0070741_107037704	3300005529	Surface Soil	KLLRKAGAIKKGALVEIAGKTGVNDRRGLDDRGGVSTTSAPVYAVTDKDGQTEDVDTRDLKVIR*
Ga0070679_1018119731	3300005530	Corn Rhizosphere	IEKGATVEIGGKTGVNEQRGPADCGGASTTSAPVYAVTGEDGQTEIVDTRDLKIVR*
Ga0070739_1000040287	3300005532	Surface Soil	MKATLLHQAGNIKEGATVELGGKTGTNHERGPDDLGGASTTSAPVYAITDKDGQTENVDTRDLAIVR*
Ga0070739_100118804	3300005532	Surface Soil	MKATLLHHAGNIKEGATVELGGKTGTNEARGPDDLGGASTTSAPVYAITDNDGQTENVDTRDLAIVR*
Ga0070739_103648281	3300005532	Surface Soil	MKATLLHQAGNIKEGATVDLGGKTGTNDERGPDDLGGASTTSAPVYAITDKDGQTENVDTRDLTIVR*
Ga0070734_101204604	3300005533	Surface Soil	MKATLLRQAGSIKKGSTVDLEGKSGTNDERGPDDLGGASRTSSPVYTVTDKEGQTENVDTRDLKIVR*
Ga0070735_106187441	3300005534	Surface Soil	MRATLLHRAGSIDEGATVEIGGKNGVNEQRGPEDCGGASTISAPVYAVTGEDGQTEMVDTRDLKIVR*
Ga0070730_103474102	3300005537	Surface Soil	MKAKLLHRAGSIEKDATVEIGGKKGVNEQRGPQDCGGASTTSAPLYAVTGEDGQTEIVDTRDLKIVR*
Ga0070731_104271231	3300005538	Surface Soil	MDWDEWAMKAKLLRKAGDIEEGATVEIGSKTGVNDQRGPEDVGGVSATSAPVYAITDEDGHAENVDTRDLTVVR*
Ga0070731_104380462	3300005538	Surface Soil	MKATLLHQAGKIDKGATVEVGGKTGANNKRGSEDCGGASTTSAPVYAITDKDGQTESVDTRDLTIVP*
Ga0070731_105389782	3300005538	Surface Soil	MRAKLLRRAGSIEQGATVEVRSKSGENDKRGRGDCGGASATSAPVYAVTDEDGQTENVDTRDLKIVR*
Ga0070732_1000216613	3300005542	Surface Soil	MKAKLLHKAGKIKKGAIVEVGGKTGENDHRGPEDRGGASTTSAPVYTITDKNGQAENVDTRDLKIVH*
Ga0070732_100457964	3300005542	Surface Soil	MKAKVLRKAGDIEEGAIVEVGGKTGVNDARGPEDLGGVSVTSAPVYAITDEDGHAENVDTRDMKIVR*
Ga0070732_100677404	3300005542	Surface Soil	MRATLLHRAGSIDEGATVEIGGKKGVNEQRGPEDCGGASTISAPVYAVTGEDGQTEMVDTRDLKIVR*
Ga0070732_102020891	3300005542	Surface Soil	MRATLLHRAGSIEKGATVEIDGKKGMNEERGPEDCGGASTTPAPVYAVTGEDGQREIVDTRDLKIVR*
Ga0070732_103871771	3300005542	Surface Soil	KAGKIKKGASVDLGGKTGTNDGRGPDDLGGAITTSAPVYAITDKDGRTENVDTRDLMIER
Ga0070732_108215332	3300005542	Surface Soil	MRATLLHRAGGIEKGATVEIGGKKGVNEQRGTDDCGGASTTSAPVYAVTGEDGQTEIVDTRDLMIVR*
Ga0070717_105916541	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	KAKLLRKAGEIEKGAIVEVGSKTGVNDQRGPEDLGGVSATSAPVYAITDKDGQAENADTRDLKIVR*
Ga0079220_115462421	3300006806	Agricultural Soil	MKATLLHQAGNIKEGTTVEIGAKTGTNDKRGPDDRGGASTTSAPVYAITDKDGQTEKVDTRDLTIVR*
Ga0075426_114777992	3300006903	Populus Rhizosphere	MKVKLLRKFGKIEKGATVEVGGKMGTNEERGPEDVGGTSTTSAPVYAVTDEEGQTENVDTRDLKVER
Ga0075423_114245472	3300009162	Populus Rhizosphere	MKVKLLRKSGKIEKGATVEVGAKTGTNEERGPEDVGGTSTTSAPVYAVTDEEGQTENVDTRDLKVQR*
Ga0134125_103421653	3300010371	Terrestrial Soil	MRATLLHRAGSIAKGATVEIDGKQGMNEQRSAEDCGGASSTPAPVYAVTGEDGQREIVDTRDMKILR*
Ga0134126_104589772	3300010396	Terrestrial Soil	MKATLLHRAGSIEKGATVEIGDKTGVNEQRGPADCGGASTTSAPVYAVTGEDGQTEIVDTRDLKIVR*
Ga0134126_110094871	3300010396	Terrestrial Soil	MRATLLHRAGSIAKGETVEIDGKQGMNEQRSPEDCGGASSTPAPVYAVTGEDGQREIVDTRDLKILR*
Ga0134126_123014491	3300010396	Terrestrial Soil	MKAKLLHQAGKIKKGAIVDLGGKTGANDKRGPKDRGGASTTSAPVYAITDKDGQTENVDTRDLKVVR*
Ga0126350_114197611	3300010880	Boreal Forest Soil	MRAKLLHRAGSLEKDATVEIGGKKGVNEQRGPADCGGASTTSAPVYAVTGEDGQTEIVDTRDLKIVR*
Ga0120157_10887762	3300011994	Permafrost	MKAKLLHQAGKIEKGATVDLGGKTGANDERGPEDRGGASTTSAPVYAITDKDGQTENVDTRDLKVVR*
Ga0137374_105609842	3300012204	Vadose Zone Soil	MKAKLLHEAGSIEEGATVEVGAKVGENRRRRPEDYGGASATSAPVYAVTDKAGHTEKVDTRDFKIVR*
Ga0137380_107375443	3300012206	Vadose Zone Soil	MKAKLLHEAGSIEEGATVEVGAKVGENRRRRPEDYGGASATSAPVYAVTDKAGHAENVDTRDFKIVR
Ga0137381_107878902	3300012207	Vadose Zone Soil	MKAKLLHKAGSIKEGATVEVGAKVGENRRRRPEDYGGASATSAPVYAVTDKAGH
Ga0137372_108483641	3300012350	Vadose Zone Soil	MKAKLLHEAGSIEEGATVEVGAKVGENRRRGPEDYGGASATSAPVYAVTDKAGHTEKVDTRDFKIVR*
Ga0137367_108183641	3300012353	Vadose Zone Soil	MKAKLLHEAGSIQEGATVEVGAKVGKNRRRRPEDYGGASATSAPVYAVTDKAGHTEKVDTRDFKIVR*
Ga0137366_111917552	3300012354	Vadose Zone Soil	RKESTMKAKLLHEAGSIQEGATVEVGAKVGKNRRRRPEDYGGASATSAPVYAVTDKAGHTEKVDTRDFKIVR*
Ga0137369_108376841	3300012355	Vadose Zone Soil	MKAKLLHKAGSIEEGATVEVGAKVGENRRRGPEDYGGASATSAPVYAVTDKAGHTEKVDTRDFKIVR*
Ga0150984_1011599472	3300012469	Avena Fatua Rhizosphere	VVGSTTAQRKESTVKAKLLHVAGRIEEGAIVEVGLKVGENDRRGAEDYGGASTTAAPVYTVTDLAGHAENVDTRDLALVR*
Ga0150984_1201905622	3300012469	Avena Fatua Rhizosphere	MRAKLLHEAGSIEEGATVEVGARVGANPARGAAEYGGASTTTGPVYAVTDAAGHVENVDTRDLKLVL*
Ga0137373_113078671	3300012532	Vadose Zone Soil	MKAKLLHEAGSIQEGATVEVGAKVGKNRRRRPEDYGGASATSAPVYAVTDKAGHAENVDTRDFKIVR*
Ga0157372_108703302	3300013307	Corn Rhizosphere	MKATLLHQAGKIQKGATVDLGCRTGTNDARSPDDLGRASTTSAPVYAITDEHGQTANV
Ga0120149_10623533	3300014058	Permafrost	KLLHQAGKIEKGATVDLGGKTGANDERGPEDRGGASTTSAPVYAITDKDGQTENVDTRDLKVVR*
Ga0182015_110187302	3300014495	Palsa	MDERGLPIMKAKLLHRAGTIKKGALVDVRGKTGKNDERGPDDRGGASTTPAPVYVVADGDGGTENVDTRDLKIVR*
Ga0182008_100125786	3300014497	Rhizosphere	MKATLLQQAGNIKKGATVDLGGKTGTNDERGPDDLGGASTTSAPVYAITDKDGRTENVDTRDLTIDR*
Ga0182008_100978862	3300014497	Rhizosphere	MKATLLHQAGKIKKGAIVDLGGKTGTNNKRGPDDLGGASTTSAPVYAITDKDGRTENVDTRDLTIDR*
Ga0182008_106649361	3300014497	Rhizosphere	MKATLLHQAGNIKEGATVDLGGKTGTNDERGPDDLGGASTTSAPVYAITEKDGQTENVDTRDLTIVR*
Ga0182006_10195236	3300015261	Rhizosphere	MKATLLQQAGNIKKGATVDLGGKTGTNDERGPDDLGGASTTSAPVYAITDKDGRTENVD
Ga0184642_15052051	3300019279	Groundwater Sediment	MKAKLLHEAGSIEEGATVEVGAKVGENRRRRPEDYGGASATSAPVYAVTDKAGHTEKVDTRDFKIV
Ga0193751_10227255	3300019888	Soil	MRAKLLHRAGSIEKGATVEIGGKKGVNEQRGPEDCGGASATSAPVYAVTGEDGETEMVDTRDLKIVR
Ga0193751_10269982	3300019888	Soil	MKAKLLHQAGKIKKGATVDVGGKTGTNDERAPEDLGGASTTSAPIYAITDKDGQTENVDTRDLTIVR
Ga0197907_103357821	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MKATLLHQAGNIKEGATVDLGGKTGTNDERGPDDLGGASTTSAPVYAITDKDGQTENVDTRDLTIVR
Ga0208219_10025294	3300025625	Arctic Peat Soil	MRAKLLHRAGSIEKDATVEIGGKKGVNEQRGPEDCGGASTTSAPVYAVTGEDGQTEIVDTRDLKIVR
Ga0208219_10191141	3300025625	Arctic Peat Soil	MRATLLRRAGSIEKGVTVEVVGKKGVNEQRGPGDCGGASTTSAPVYAVIGEDGQTEIIDTRDLKIVR
Ga0208849_10038623	3300025664	Arctic Peat Soil	MRAKLLHRVGRIKKGATVEISGKKAMNEQRGPKDCGGASTTSAPVYAVTGEDGQTESVDTRDLKIVL
Ga0207699_106013141	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MKATLLHQAGKIRKGATVDLGCKTGTNDARGPDDLGGASATSAPVYAITDEHGQTANVDTRDLRIVR
Ga0207707_101937513	3300025912	Corn Rhizosphere	MKATLLHRAGSIEKGATVEIGGKTGVNEQRGPADCGGASTTSAPVYAVTGEDGQTEIVDTRDLKIVR
Ga0207663_104819991	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MRAKLLHRAGSIEKGATVEVGGKKGVNEQRGPEDCGGASTISAPVYAVTGEDGQTEIVDTRDLKIIR
Ga0207663_115675231	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MKATLLHEAGNIKEGATVDVVGRTGTNDERGPDDIGGASTISAPVYVITDKDGHSEN
Ga0207700_100127895	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MRATLLRRAGSIEKDAAVEIGGKTGVNQQRGPEDGGGASTTSAPVYVVTGERGQTEIVDTRELKIVR
Ga0207702_115371902	3300026078	Corn Rhizosphere	MKATLLHKAGNIKKGETVDVGGKTGSNDERGPDDTGGASTTSAPVYAVTDKDGQTE
Ga0209810_100032612	3300027773	Surface Soil	MKATLLHHAGNIKEGATVELGGKTGTNEARGPDDLGGASTTSAPVYAITDNDGQTENVDTRDLAIVR
Ga0209810_100050787	3300027773	Surface Soil	MKATLLHQAGNIKEGATVELGGKTGTNHERGPDDLGGASTTSAPVYAITDKDGQTENVDTRDLAIVR
Ga0209060_100866113	3300027826	Surface Soil	MKATLLRQAGSIKKGSTVDLEGKSGTNDERGPDDLGGASRTSSPVYTVTDKEGQTENVDTRDLKIVR
Ga0209580_100097093	3300027842	Surface Soil	MKAKVLRKAGDIEEGAIVEVGGKTGVNDARGPEDLGGVSVTSAPVYAITDEDGHAENVDTRDMKIVR
Ga0209580_100442463	3300027842	Surface Soil	MRATLLHRAGSIDEGATVEIGGKNGVNEQRGPEDCGGASTISAPVYAVTGEDGQTEMVDTRDLKIVR
Ga0209580_100634932	3300027842	Surface Soil	MKAKLLHKAGKIKKGAIVEVGGKTGENDHRGPEDRGGASTTSAPVYTITDKNGQAENVDTRDLKIVH
Ga0209580_100859653	3300027842	Surface Soil	EKGATVEIDGKKGMNEERGPEDCGGASTTPAPVYAVTGEDGQREIVDTRDLKIVR
Ga0209580_105588562	3300027842	Surface Soil	MRATLLHRAGGIEKGATVEIGGKKGVNEQRGTDDCGGASTTSAPVYAVTGEDGQTEIVDTRDLMIVR
Ga0209579_101793301	3300027869	Surface Soil	MDWDEWAMKAKLLRKAGDIEEGATVEIGSKTGVNDQRGPEDVGGVSATSAPVYAITDEDGHAENVDTRDLTVVR
Ga0209579_102807041	3300027869	Surface Soil	MKATLLHQAGKIDKGATVEVGGKTGANNKRGSEDCGGASTTSAPVYAITDKDGQTESVDTRDLTIVP
Ga0307374_100851862	3300031670	Soil	MRAKLLHRVGSIKKGATVEISGKKAMNEQRGPKDCGGASTTSAPVYAVTGEDGQTESVDTRDLKIVL
Ga0310813_113388061	3300031716	Soil	MKATLLHQAGKIKEGATVDLGGKTGTNDERGPDDLGGASTTSAPVYAITDKDGRTENVDTRDLTIDR
Ga0307475_102386312	3300031754	Hardwood Forest Soil	SQKEEEWTMKAKVLRKAGDIEEGAIVEVGGKTGVNDARGPEDLGGVSVTSAPVYAITDEDGHAENVDTRDMKIVR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091036

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences