Basic Information | |
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Family ID | F091034 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 108 |
Average Sequence Length | 59 residues |
Representative Sequence | VTRAETRLTAAEAAESVDGGEAVGIPSLWDAVSGMAAALRQGTTVAQEASRLGVELTRIA |
Number of Associated Samples | 99 |
Number of Associated Scaffolds | 108 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 0.00 % |
% of genes from short scaffolds (< 2000 bps) | 0.00 % |
Associated GOLD sequencing projects | 96 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.43 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (100.000 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (44.444 % of family members) |
Environment Ontology (ENVO) | Unclassified (45.370 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (50.000 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Fibrous | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 48.86% β-sheet: 0.00% Coil/Unstructured: 51.14% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.43 |
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Visualization |
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Bog Forest Soil Bog Freshwater Sediment Soil Vadose Zone Soil Tropical Forest Soil Peatlands Soil Corn, Switchgrass And Miscanthus Rhizosphere Agricultural Soil Arctic Peat Soil Soil Grasslands Soil Soil Soil Hardwood Forest Soil Soil Permafrost Soil Tropical Forest Soil Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Palsa Corn Rhizosphere Miscanthus Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI20188J14859_10188162 | 3300001418 | Arctic Peat Soil | VSDAETTVTAAEAAESADGGEAVGIPSLKEAVGGLAAALSQAQTLAREIGGLGLEFTCACRESRQRL* |
JGI25617J43924_103295211 | 3300002914 | Grasslands Soil | VSSAEATVTATKAAESVDGGEAVGIPSLQEAVGGLATALSQGTTVAGEAGRL |
Ga0062389_1006488993 | 3300004092 | Bog Forest Soil | VTSAEVRLSAAEAAESVDGGEAVGIPSLEAVRGMAAALSQGTTVAREASRP |
Ga0066677_101934491 | 3300005171 | Soil | VSSADATMTATKAAESVDGGEAVGIPSFQEAAGGLATALSQGTTVAREAAWLGLELTRIAWGLSDVA |
Ga0066689_107730121 | 3300005447 | Soil | VTRTETRLTAAEAAESVDGGEAVGIPSLWDAVSGMAAALRQGTTVAQEASRLGVELTRI |
Ga0070706_1017327071 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | VTSAKTRLTAAEAAESVDGGEAVGIPSLWDAASGMAAALRQGTTVAQEA |
Ga0068855_1023030082 | 3300005563 | Corn Rhizosphere | MTDGTAESVGGGEAVGMPSLRQAASGLAAALSQGTTVAREAGRLGAELTRIARGRSDVAPARGDR |
Ga0066903_1058423701 | 3300005764 | Tropical Forest Soil | MTSANARMTTPETTESVNGGEAVGIPSLRDAVNGLAAALTQGTAVAREASRLSAELTRIAWGLSD |
Ga0066787_100455422 | 3300005950 | Soil | VSDAKTTVTDSEAAESADGGEAVGLPSLKEAVGGLAAALGQAQTVAREISGLGLEFTRIARGNSSVAP |
Ga0079221_113085401 | 3300006804 | Agricultural Soil | VSSSDAAMMTAGAAESVDGGESVGIPSLTGAVGGLAAALSQGTTVAQEVTRLGVELTRIAWGL |
Ga0099830_104574002 | 3300009088 | Vadose Zone Soil | VTRAKTRLTAAEAAESIDGGEAVGIPSLWDAVSGMAAALRQGTTVAQEASRLGVELTRIALGRSDVAPT |
Ga0099827_120178481 | 3300009090 | Vadose Zone Soil | MTDGTAESVGGGEAVAMPSLRQAASGLAAALSQGTTVAREAGRLGAELTRIACG |
Ga0099792_106301602 | 3300009143 | Vadose Zone Soil | VSSAEATVTAAGAAESVDGGEAVGIPSLQEAVGGLAAALSQGQTVAREVGLLGLELTRIAWGLS |
Ga0105243_130253951 | 3300009148 | Miscanthus Rhizosphere | MTDGTAESVGGGEAVGMPSLRQAASGLAAALSQGTTVAREAGRLGAELTRIARGR |
Ga0116214_11842571 | 3300009520 | Peatlands Soil | VTSEETRLTAAEAAESVDGGEAVGIPSLWDAVNGMAAALRLGTTVAQEASQLGVELTRIAWGLS |
Ga0116218_10798271 | 3300009522 | Peatlands Soil | VTSEETRLTAAEAAESVDGGEAVGIPSLWDAVNGMAAALRQGTNVAQEASQLG |
Ga0116221_13348202 | 3300009523 | Peatlands Soil | VTSEETRLTAAEAAESVDGGEAVGIPSLWDAVNGMAAALRQGTTVAQEASQLGVELTRIAWSLSDVA |
Ga0116215_11813811 | 3300009672 | Peatlands Soil | MTATKAAESVDGGEAVGIPSLQEAAGGLATALSQGTTVAREAGRLGLELTRIAWGLSDV |
Ga0116217_102829601 | 3300009700 | Peatlands Soil | MTATKAAESVDGGEAVGIPSLEAVRGMAAALSQGTTVAREASRPSSACWELR |
Ga0126374_112533663 | 3300009792 | Tropical Forest Soil | VTSEETRLTAAEAAESVDGGEAVGIPSLWDAVSGLAAALRQVTTVAQEASRLGLELTRIAWGLSDVA |
Ga0126381_1011115641 | 3300010376 | Tropical Forest Soil | VTSAETRLTAAEAAEPVDGGEAVGIWDAVSGMAAALRQGTTVAHEASRLGVELTRIAWGLSDVAPAKGDR |
Ga0150983_146709712 | 3300011120 | Forest Soil | VSDAETTETDSEAAESADGGEAVGIPSLKEAVGGLAAALGQAHTVAREVS |
Ga0137393_107617501 | 3300011271 | Vadose Zone Soil | VTRAETRLTAAEAAESVDGGEAVGIPSLWDAVSGMAAALRQGTTVAQEASRLGVELTRIA |
Ga0137361_111674922 | 3300012362 | Vadose Zone Soil | VTRAETRLTAAEAAESIDGGEAVGIPSLWDAVSGMAAALRQGTTVAQEAS |
Ga0137398_102951852 | 3300012683 | Vadose Zone Soil | VTSANDTLTATAAESVDGGEAVGIPSLQDAVGGLAAALSQGTTVAREAS |
Ga0181531_103625262 | 3300014169 | Bog | VSSAEATATATKAAESVDGSEAVGMPSLEGAVGGLAAALSQWQTVTCEVGRLGLE |
Ga0182024_112694071 | 3300014501 | Permafrost | MTDGTGSDGTAESVGGGEAVGMPSLRQAAGGLAAALSQGTTVAREASRLGAELTRIAR |
Ga0182035_115097502 | 3300016341 | Soil | VTSAETSLPAAEAAESVDGGEAVGIPSLWDAISGMATALRQGTTVAQEAS |
Ga0182032_119374431 | 3300016357 | Soil | MTSANARLTTPETTESVNGGEAVEIPSLRDAVNGLAAALTQGTAVAREASRLGAELTRIAWGLSDVAPAK |
Ga0182039_116385361 | 3300016422 | Soil | VASAETRLTAAEAAESADGGEAVGIPSLRDAVGGMAAALS |
Ga0182038_120867751 | 3300016445 | Soil | MTSADARLTAAEAAESADSGEAVGIPSLQETISGLAAALSQGTTVARETTRLGLELT |
Ga0187823_100564582 | 3300017993 | Freshwater Sediment | VTSAETTLTAAEAAESVDGGEAVGIPSLGDAVSGMAAALRQGTTVAQEAGRLGVEL |
Ga0066662_104376982 | 3300018468 | Grasslands Soil | VSSADATMTATKAAESVDGGEAVGIPSFQEAAGGLATALSQGTTVAREAAWLGLELTRIA |
Ga0066669_112560711 | 3300018482 | Grasslands Soil | VSSADATMTATKAAESVDGGEAVGIPSFQEAAGGLATTLSQGTTVAREAAWLGL |
Ga0193729_11095681 | 3300019887 | Soil | MTDGTAESVGGGEAVGMPSLRQAASGLAAALSQGTTVAREAGRLGAELTRIAWGRSDVAPARGDRRL |
Ga0210404_105539291 | 3300021088 | Soil | VTSAKTRLTAAEAAESVDGGEAVGIPSLWDAASGMAAALRQGTTVAQEASRLGVELTRIAWGLSD |
Ga0210406_103400122 | 3300021168 | Soil | VSSSDATTTDGTAESVGGGEAVGIPSLTGAVGGLAAALSQGTTVAREATRLGLEL |
Ga0210405_109451702 | 3300021171 | Soil | MTDGTAESVGGGEAVGMPSVRQAASGLAAALSQGTTVAREAGRLGAELTRIAWGRS |
Ga0210408_109074512 | 3300021178 | Soil | MLTAGAAESVDGGESVGIPSLTGAVGGLAAALSQGTTVAQEVTRLGVELTRIAW |
Ga0210388_101544691 | 3300021181 | Soil | VSDAETTVTDTEAAESADGGEAVGIPSLKEAIGGLAAALGQAQTVVRE |
Ga0210384_103744311 | 3300021432 | Soil | MMTAGAAESVDGGESVGIPSLTGAVGGLAAALSQGTTVAQEVTRLGVELTRIAWG |
Ga0210390_110453932 | 3300021474 | Soil | VSSLDATMMTAGAAESVDGGESVGIPSLTGAVGGLAAALSQGTTVAQEVTRLGVE |
Ga0210410_109386742 | 3300021479 | Soil | VSSSDATTTDGTAESVGGGEAVGIPSLTGAVGGLAAALSQGTTVAREATRLGLELPVS |
Ga0210409_105602211 | 3300021559 | Soil | VSSSDATMMTAGAAESVDGGESVGIPSLTGAVGGLAAALSQGTTVAQEVTRLGV |
Ga0224712_106545391 | 3300022467 | Corn, Switchgrass And Miscanthus Rhizosphere | VSSSDATTTDGTAESVGGGEAVGIPSLTGAVGGLAAALSQGTTVAREATRLGLELTRIAWGRSDVAPAK |
Ga0208586_10031394 | 3300025588 | Arctic Peat Soil | VSDAETTVTAAEAAESADGGEAVGIPSLKEAVGGLAAALSQAQTLAREIGGLGLEFTCACRESRQRL |
Ga0208480_10194132 | 3300025633 | Arctic Peat Soil | VSDAETTVTATEAAESADGGEAVGIPSLKEAVGGLAAALSQAQTLAREIGGLGLEFTCACRESRQRL |
Ga0208357_10077831 | 3300025703 | Arctic Peat Soil | VSDAETTVTAAEAAESADGGEAVGIPSLKEAVGGLAAALSQAQTLAREIGGLGLEFTCACRES |
Ga0257178_10526882 | 3300026446 | Soil | VTSAETRLTAAEAAESVNGGEAVGIPSLWDAVSGMAAALRQGTTVAQE |
Ga0257156_10747971 | 3300026498 | Soil | VTRAETRLTAAEAAESIDGGEAVGIPSLWDAVSGMAAA |
Ga0209648_107254981 | 3300026551 | Grasslands Soil | VTSAETRLTAAEAAESVDGGEAFGIPSLWDAASGMAAALRQGTTVAQEASRLGVELTRIA |
Ga0209655_100827631 | 3300027767 | Bog Forest Soil | VTSAKTRLTAAEAAESVDGGEAVGIPSLWDAASGMAAALRQGTTVAQEASRLGVE |
Ga0209624_108032601 | 3300027895 | Forest Soil | VSDAETTETDSDAAESADGGEAVGIPSLRDAVGGLAAALGQ |
Ga0209526_105474982 | 3300028047 | Forest Soil | VSSSDATMTTAGAAESVGGGEAVGMPSLRQAVGGLAAALSQGTTVAREATRLGLELTRIAWGLS |
Ga0302234_101030082 | 3300028773 | Palsa | VSDAETTVTDTEAAESADGGEAVGIPSLREAVGGLAAALSQAQTVAREIGG |
Ga0302225_101577471 | 3300028780 | Palsa | VSDAETTVTDSEAAESADGGEAVGIPSLKEAVGGLAAALSQAQTVAREIGGLGAEFTRIARGHSS |
Ga0302228_104369722 | 3300028808 | Palsa | VSDAETTVTDTEAAESADGGEAVGIPSLKEAIGGLAAALGQAQTVAREVSGLGVEFTRIARGNSSVAPAK |
Ga0311340_113079482 | 3300029943 | Palsa | VSSSDATLTDEAAESVGGGEAVGMPSLRQAASGLAAALSQGTTVAREASRLGVE |
Ga0311370_100723704 | 3300030503 | Palsa | VSDAETMGTDSEAAESAGGGEAVGIPSLKEAVGGLAAALSQAHTVAREIGGLGLEFTRIARG |
Ga0302183_100174623 | 3300030509 | Palsa | MGGFTDPEEWRVSSSDATMTDGAAESVGGGEAVGMPSLRQAASGLAAALSQGTTVAREASWLGVELTSIACGV |
Ga0311354_115426001 | 3300030618 | Palsa | VSGSDATMTDGAAESVGGGEAVGMPSLRQAASGLAAALSQGTTVAREASRLGAELTRIARGRSDVAP |
Ga0210251_102368101 | 3300030624 | Soil | VSDAETTVTDTEAAESADGGEAVGIPSLKEAVGGLAAALSQTQTVAREIGGLGVE |
Ga0318516_105691882 | 3300031543 | Soil | VTSAETRLTAAEAAESVDGGEAVGIPSLGGAVSGMAAALRQGTTVAQEAGRLGVELTRIAWGLSDVAPTK |
Ga0318534_108728191 | 3300031544 | Soil | MTSADARLTAAEATESVNGGEAVGIPSLHDAVSGMAAVLTQGT |
Ga0318541_106733302 | 3300031545 | Soil | VTSAETSLKAAEAAESVDGGEAVGIPSLWDAISGMATALRQGTTVAQEASRLGVELTRIAWACPTWLRPRVTGVSPIRHGRRTRYSG |
Ga0318538_100413791 | 3300031546 | Soil | MTSTDAKLTAGEALESVNGGEAVGMPSLRDAVSGLAAALSQGTTVAREASWLGVELTRIAWGLSDVAPARG |
Ga0318528_101352831 | 3300031561 | Soil | VTSAETSLPAAEAAESVDGGEAVGIPSLWDAVSGIATALRQGTTLAREASRLGVE |
Ga0318573_102275232 | 3300031564 | Soil | VTSAETSLPAAEAAESVDGGEAVGIPSLWDAVSGMATALRQGTTVAQEA |
Ga0318573_104211832 | 3300031564 | Soil | VTSAETTLTAAEAAESVDGGEAVGIPSLWDAVSGMAAAGERSR |
Ga0318555_101429202 | 3300031640 | Soil | VTSAETSLPAAEAAESVDGGEAVGIPSLWDAVSGMATALRQGTTVAQEASRLGVELTRIA |
Ga0318555_103331062 | 3300031640 | Soil | VTSSDATTMTAGAAESVDGGEAVGIPSLTGAVGGLAAALSQGTTVAQEAARLGVE |
Ga0318572_101722081 | 3300031681 | Soil | VTSAETSLKAAEAAESVDGGEAVGIPSLWDAISGMATALRQGTTVAQEASRLGVELTRIAWAC |
Ga0318493_102911742 | 3300031723 | Soil | MTSTDAKLTAGEALESVNGGEAVGMPSLRDAVSGLAAALSQGTTVAREASWLGVELT |
Ga0318493_108974381 | 3300031723 | Soil | VTSAETTLTAAQAAESVDGGEAVGIPSLWDAVSGLAAALRQGTTVAQEASRLGVELTR |
Ga0306918_104991842 | 3300031744 | Soil | MTSANARLTTAETMESVNGGEAVGIPSLRGAVNGLAAALTQGTAVAREASRLGAELTRIAWGLSDVAP |
Ga0318502_108859052 | 3300031747 | Soil | VTSAETSLKAAEAAESVDGGEAVGIPSLWDAISGMATALRQGTTVAQEASRLGVEL |
Ga0318492_107656072 | 3300031748 | Soil | VTSAETSLPAAEAAESVDGGEAVGIPSLWDAVSGMATALRQGTTVAQEASRLGVELTR |
Ga0318535_102164871 | 3300031764 | Soil | VTSAETSLPAAEAAESVDGGEAVGIPSLWDAVSGMATALRQGTTVAQEASRLGVELTRIAWGLSDVAPA |
Ga0318521_100364932 | 3300031770 | Soil | MTSTDAKLTAGEALESVNGGEAVGMPSLRDAVSGLAAALSQGTTVAREASWLGVELTRIASDK |
Ga0318566_101563912 | 3300031779 | Soil | VTSAETSLPAAEAAESVDGGEAVGIPSLWDAVSGMATALRQGTTVAQEASRLGVELTRI |
Ga0318547_104088592 | 3300031781 | Soil | MTSANARLTTPETTESVNGGEAVGIPSLRDAVNGLAAALTQGTAVAREASRLGAEFTRIAWGLSDL |
Ga0318529_105127791 | 3300031792 | Soil | VASAETGLTVAEAAESAAGGEAVGIPSLRDAVGGMAAALSQGT |
Ga0318503_102840002 | 3300031794 | Soil | MTSTDAKLTAGEALESVNGGEAVGMPSLRDAVSGLAAALSQGTTVAREASWLGVELTRIAWGLSD |
Ga0318565_100013864 | 3300031799 | Soil | MTSTDAKLTAGEALESVNGGEAVGMPSLRDAVSGLAAALSQGTTVAREASWLGVELTRIAWGLSDVAPARATGVSPIRRGCRTRYSG |
Ga0318568_103388932 | 3300031819 | Soil | MTSANARLTTSETTESVNGGEAAGIPSLRDAVNGLAAALTQGTAVAREASRLGAELTRIAWGLSDVAP |
Ga0318568_106147332 | 3300031819 | Soil | VTSAETRLTAAEAAESVDGGEAVGIPSLGGAVSGMAAALRQGTT |
Ga0310917_103258441 | 3300031833 | Soil | VTSAETSLPAAEAAESVDGGEAVGIPSLWDAVSGMATALRQGTTVAHEASRLGVELTRIAWGLSDVA |
Ga0310917_112081632 | 3300031833 | Soil | VTSAETSLKAAEAAESVDGGEAVGIPSLWDAISGMATALRQGTTVAQEASRLGVELTRIAWGLSDVAP |
Ga0318551_101632041 | 3300031896 | Soil | MTSADARLTAAEAAESADSGEAVGIPSLQETISGLAAALG |
Ga0306923_125641472 | 3300031910 | Soil | VSSTDATMTAAKAAESVDGGEAVAIPSLHQAASGLGKALSQGTAVAQEATRLGLELTRIAWGLSDVA |
Ga0306921_121080172 | 3300031912 | Soil | VTSAETSLKAAEAAESVDGGEAVGIPSLWDAISGMATALRQGTTVAQEASRLGVELTRIAWACPTWLRPRVTGV |
Ga0306926_107683111 | 3300031954 | Soil | VTSSDATTMTAGAAESVDGGEAVGIPSLTGAVGGLAAALSQGTTVAQEAARLGVELTRIA |
Ga0306926_120546872 | 3300031954 | Soil | VNNSDATMTRAESVGGGEAVGIPSLRDAVSGLAAALTQGTTVAREASRLGGELTRIAWGLSD |
Ga0306926_130346251 | 3300031954 | Soil | VSSSDATMTTDGAAESVGGGEAVGIPSLPQAAKGLAAAFSQGTAVAGEAGRLGVELTRIARGRSD |
Ga0306922_109881621 | 3300032001 | Soil | VTSAETSLPAAEAAESVDGGEAVGIPSLWDAVSGMATALRQGTTVAQEASRLGVELTRIAWGLSDVA |
Ga0306922_111905851 | 3300032001 | Soil | VTSAETSLKAAEAAESVDGGEAVGIPSLWDAISGMATALRQGTTVAQEASRLGVELTRIAWGLSDVAPAKG |
Ga0318569_100961952 | 3300032010 | Soil | VTSAETSLKAAEAAESVDGGEAVGIPSLWDAISGMATALRQGTTVAQEASRLGVELTRIAWGLSDVAPPK |
Ga0318559_106010871 | 3300032039 | Soil | VTTAQTRLTAAEAAESVDGGEAIGIPSLRAAVSGMAAALRQGTTVAQEASRLGVELTRIAWGLSDVAPAK |
Ga0318545_100091463 | 3300032042 | Soil | VTIAESRLTAAEAAEPVDGGKTVGIPSLWNPVSGMSAALRQGTTVAQEASRLGVELTRIAWGLSDVAPAK |
Ga0318545_101884661 | 3300032042 | Soil | MTSANARLTTAETMESVNGGEAVGIPSLRGAVNGLAAALTQGTAVAREASRLGAELTRIAWGLS |
Ga0318556_101903022 | 3300032043 | Soil | VTSAETSLPAAEAAESVDGGEAVGIPSLWDAVSGMATALRQGTTVAQEASRLGV |
Ga0318533_107567191 | 3300032059 | Soil | VTTAQTRLTAAEAAESVDGGEAIGIPSLRAAVSGMAAALRQGTTVAQEA |
Ga0318505_103261101 | 3300032060 | Soil | MTSADARLTAAEATESVNGGEAVGIPSLHDAVSGMAAVLTQGTTVAREA |
Ga0318504_103610461 | 3300032063 | Soil | VTSAETSLPAAEAAESVDGGEAVGIPSLWDAVSGMATALRQGTTVAQ |
Ga0318510_102749661 | 3300032064 | Soil | MTSANARMTTPETTESVNGGEAVGIPSLRDAVNGLAAALTQGTAVAREASRLGAEFTRIAWGLSDLAPAKG |
Ga0318514_101972101 | 3300032066 | Soil | VTSAETSLPAAEAAESVDGGEAVGIPSLWDAVSGMATALRQGTTVAH |
Ga0306924_116875772 | 3300032076 | Soil | MTSANARLTTPETTESVNGGEAVGIPSLRDAVNGLAAALTQGTAVAREASRLGAEFTRIAWGLS |
Ga0307471_1043133881 | 3300032180 | Hardwood Forest Soil | VTSTETRLTAAEAAESVDGGEAVGIPSLWDAASGMAAALRQGTTVAQEASRLGVELTRIA |
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