Metagenome Family F091019

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091019
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	134 residues
Representative Sequence	QMDLRFSPDEIEQFDARGRVKRQDSSKMPDPYSISQILRGTGSYLDNRDVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG
Number of Associated Samples	98
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.56 %
% of genes near scaffold ends (potentially truncated)	90.74 %
% of genes from short scaffolds (< 2000 bps)	92.59 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (16.667 % of family members)
Environment Ontology (ENVO)	Unclassified (40.741 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (41.667 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 32.90% β-sheet: 9.68% Coil/Unstructured: 57.42%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF01522	Polysacc_deac_1	12.96
PF09084	NMT1	1.85
PF13379	NMT1_2	1.85
PF06500	FrsA-like	0.93
PF14691	Fer4_20	0.93
PF13410	GST_C_2	0.93
PF00005	ABC_tran	0.93
PF01610	DDE_Tnp_ISL3	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	12.96
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	1.85
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	1.85
COG3464	Transposase	Mobilome: prophages, transposons [X]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	92.59 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	90.74 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	90.74 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	90.74 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	90.74 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000041\|ARcpr5oldR_c018095	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	621	Open in IMG/M
3300000550\|F24TB_11421358	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	586	Open in IMG/M
3300000550\|F24TB_11517389	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1182	Open in IMG/M
3300000550\|F24TB_12895526	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	558	Open in IMG/M
3300000559\|F14TC_100935230	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1875	Open in IMG/M
3300000559\|F14TC_107447633	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	611	Open in IMG/M
3300000596\|KanNP_Total_noBrdU_T14TCDRAFT_1022477	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	686	Open in IMG/M
3300000787\|JGI11643J11755_11631574	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1980	Open in IMG/M
3300000789\|JGI1027J11758_12923959	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1506	Open in IMG/M
3300000890\|JGI11643J12802_11837050	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1153	Open in IMG/M
3300000956\|JGI10216J12902_100593950	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	663	Open in IMG/M
3300000956\|JGI10216J12902_102028017	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	557	Open in IMG/M
3300000956\|JGI10216J12902_105257971	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	503	Open in IMG/M
3300001431\|F14TB_104443971	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1271	Open in IMG/M
3300003267\|soilL1_10188354	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1165	Open in IMG/M
3300003996\|Ga0055467_10080903	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	896	Open in IMG/M
3300003998\|Ga0055472_10019444	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1464	Open in IMG/M
3300003999\|Ga0055469_10196139	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	629	Open in IMG/M
3300004479\|Ga0062595_101284256	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	657	Open in IMG/M
3300005093\|Ga0062594_101620146	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	671	Open in IMG/M
3300005336\|Ga0070680_100344128	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1267	Open in IMG/M
3300005353\|Ga0070669_101908044	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	519	Open in IMG/M
3300005356\|Ga0070674_101572847	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	592	Open in IMG/M
3300005439\|Ga0070711_101047590	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	701	Open in IMG/M
3300005441\|Ga0070700_101493743	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	574	Open in IMG/M
3300005557\|Ga0066704_10754286	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	608	Open in IMG/M
3300005713\|Ga0066905_100763997	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	835	Open in IMG/M
3300006049\|Ga0075417_10553477	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	582	Open in IMG/M
3300006844\|Ga0075428_102085577	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	587	Open in IMG/M
3300006854\|Ga0075425_102240107	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	608	Open in IMG/M
3300006871\|Ga0075434_101525513	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	677	Open in IMG/M
3300006954\|Ga0079219_10383522	All Organisms → cellular organisms → Bacteria	922	Open in IMG/M
3300007076\|Ga0075435_101738129	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	547	Open in IMG/M
3300009087\|Ga0105107_11109203	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	551	Open in IMG/M
3300009147\|Ga0114129_10859108	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1153	Open in IMG/M
3300009147\|Ga0114129_11349225	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	882	Open in IMG/M
3300009162\|Ga0075423_10781269	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1010	Open in IMG/M
3300010399\|Ga0134127_12381543	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	609	Open in IMG/M
3300010399\|Ga0134127_13079925	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	544	Open in IMG/M
3300010401\|Ga0134121_11092448	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	790	Open in IMG/M
3300012198\|Ga0137364_10352766	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1098	Open in IMG/M
3300012201\|Ga0137365_11186142	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	546	Open in IMG/M
3300012210\|Ga0137378_11665086	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	545	Open in IMG/M
3300012353\|Ga0137367_10315473	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1117	Open in IMG/M
3300012355\|Ga0137369_10417553	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	964	Open in IMG/M
3300012358\|Ga0137368_10728614	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	620	Open in IMG/M
3300012358\|Ga0137368_10915529	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	533	Open in IMG/M
3300012360\|Ga0137375_10675590	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	847	Open in IMG/M
3300012477\|Ga0157336_1004802	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	869	Open in IMG/M
3300012499\|Ga0157350_1017989	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	681	Open in IMG/M
3300012501\|Ga0157351_1010021	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	854	Open in IMG/M
3300012509\|Ga0157334_1028526	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	664	Open in IMG/M
3300012511\|Ga0157332_1069614	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	545	Open in IMG/M
3300012514\|Ga0157330_1002809	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1301	Open in IMG/M
3300012515\|Ga0157338_1075942	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	534	Open in IMG/M
3300012519\|Ga0157352_1000481	All Organisms → cellular organisms → Bacteria	2513	Open in IMG/M
3300012925\|Ga0137419_11090719	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	665	Open in IMG/M
3300012951\|Ga0164300_11180468	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	506	Open in IMG/M
3300012958\|Ga0164299_10485838	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	817	Open in IMG/M
3300012972\|Ga0134077_10148323	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	935	Open in IMG/M
3300014255\|Ga0075320_1030081	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	919	Open in IMG/M
3300014263\|Ga0075324_1133527	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	560	Open in IMG/M
3300015358\|Ga0134089_10108133	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1071	Open in IMG/M
3300017936\|Ga0187821_10051630	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1475	Open in IMG/M
3300017997\|Ga0184610_1149536	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	766	Open in IMG/M
3300018061\|Ga0184619_10538883	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	512	Open in IMG/M
3300018066\|Ga0184617_1218903	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	569	Open in IMG/M
3300018072\|Ga0184635_10041996	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1749	Open in IMG/M
3300018078\|Ga0184612_10440442	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	650	Open in IMG/M
3300018422\|Ga0190265_10700956	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1134	Open in IMG/M
3300018422\|Ga0190265_13010953	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	563	Open in IMG/M
3300018433\|Ga0066667_10923472	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	751	Open in IMG/M
3300018465\|Ga0190269_11565877	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	547	Open in IMG/M
3300019377\|Ga0190264_10192431	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1113	Open in IMG/M
3300019789\|Ga0137408_1160634	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	941	Open in IMG/M
3300019789\|Ga0137408_1165148	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1450	Open in IMG/M
3300020006\|Ga0193735_1003105	All Organisms → cellular organisms → Bacteria	5366	Open in IMG/M
3300022534\|Ga0224452_1127994	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	781	Open in IMG/M
3300025159\|Ga0209619_10035425	All Organisms → cellular organisms → Bacteria → Proteobacteria	3210	Open in IMG/M
3300025289\|Ga0209002_10185042	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1297	Open in IMG/M
3300025537\|Ga0210061_1099370	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	514	Open in IMG/M
3300025559\|Ga0210087_1000077	All Organisms → cellular organisms → Bacteria	13370	Open in IMG/M
3300025792\|Ga0210143_1032354	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	914	Open in IMG/M
3300025910\|Ga0207684_11343800	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	587	Open in IMG/M
3300025912\|Ga0207707_10029232	All Organisms → cellular organisms → Bacteria	4818	Open in IMG/M
3300025940\|Ga0207691_11254862	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	613	Open in IMG/M
3300025961\|Ga0207712_11723463	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	562	Open in IMG/M
3300026011\|Ga0208532_1010915	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	612	Open in IMG/M
3300026535\|Ga0256867_10192499	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	749	Open in IMG/M
3300027395\|Ga0209996_1067741	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	553	Open in IMG/M
3300027650\|Ga0256866_1205756	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	531	Open in IMG/M
3300027665\|Ga0209983_1065420	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	807	Open in IMG/M
3300027717\|Ga0209998_10003950	All Organisms → cellular organisms → Bacteria	3194	Open in IMG/M
3300027909\|Ga0209382_11531551	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	663	Open in IMG/M
3300030006\|Ga0299907_10061730	All Organisms → cellular organisms → Bacteria	3009	Open in IMG/M
3300030606\|Ga0299906_10968199	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	624	Open in IMG/M
3300030620\|Ga0302046_10030291	All Organisms → cellular organisms → Bacteria → Proteobacteria	4434	Open in IMG/M
3300031198\|Ga0307500_10019391	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1455	Open in IMG/M
3300031226\|Ga0307497_10430077	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	637	Open in IMG/M
3300031229\|Ga0299913_11752110	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	570	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1195001	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	511	Open in IMG/M
3300031720\|Ga0307469_10481323	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1083	Open in IMG/M
3300031740\|Ga0307468_100676073	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	858	Open in IMG/M
3300031943\|Ga0310885_10903632	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	506	Open in IMG/M
3300032174\|Ga0307470_11786835	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	520	Open in IMG/M
3300032180\|Ga0307471_103295174	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	572	Open in IMG/M
3300033475\|Ga0310811_10278761	All Organisms → cellular organisms → Bacteria	1948	Open in IMG/M
3300033480\|Ga0316620_11826929	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	603	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	82.41%
Host-Associated	Host-Associated	17.59%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	69.44%
Plants	Host-Associated → Plants	17.59%
Aquatic	Environmental → Aquatic	12.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.44%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.04%
Marine	Environmental → Aquatic → Marine	5.56%
Sediment	Environmental → Aquatic → Sediment	5.56%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.56%
Freshwater	Environmental → Aquatic → Freshwater	1.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.78%
Loam	Environmental → Terrestrial → Soil → Loam	12.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.26%
Wetlands	Environmental → Aquatic → Marine → Wetlands	5.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.56%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.63%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.70%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.78%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.93%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.93%
Sand	Environmental → Terrestrial → Soil → Sand	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.26%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.41%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	6.48%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	5.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.56%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.63%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.70%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.70%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.78%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.93%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.93%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.93%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.93%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.67%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.19%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.48%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	6.48%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	5.56%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.63%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.70%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.78%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	2.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.78%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.85%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.85%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.85%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.93%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.93%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.93%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000041	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 old rhizosphere	Host-Associated	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000596	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300003996	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2	Environmental	Open in IMG/M
3300003998	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2	Environmental	Open in IMG/M
3300003999	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012477	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.3.yng.040610	Host-Associated	Open in IMG/M
3300012499	Unplanted soil (control) microbial communities from North Carolina - M.Soil.2.yng.030610	Environmental	Open in IMG/M
3300012501	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.170610	Environmental	Open in IMG/M
3300012509	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_6	Environmental	Open in IMG/M
3300012511	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_10	Environmental	Open in IMG/M
3300012514	Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.old.130510	Environmental	Open in IMG/M
3300012515	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610	Host-Associated	Open in IMG/M
3300012519	Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014255	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleC_D2	Environmental	Open in IMG/M
3300014263	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D1	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300025159	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 3	Environmental	Open in IMG/M
3300025289	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 2	Environmental	Open in IMG/M
3300025537	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1 (SPAdes)	Environmental	Open in IMG/M
3300025559	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025792	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026011	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_301 (SPAdes)	Environmental	Open in IMG/M
3300026535	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)	Environmental	Open in IMG/M
3300027395	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 PM (SPAdes)	Host-Associated	Open in IMG/M
3300027650	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67 HiSeq	Environmental	Open in IMG/M
3300027665	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027717	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030606	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
ARcpr5oldR_0180951	3300000041	Arabidopsis Rhizosphere	MDLRFSPDEIXQFDARGKVKRQDSSKMPDPYSISQILRGTGSYLDNRDVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG*
F24TB_114213581	3300000550	Soil	GIYIVTGKAISVENVKFSFAQFVVELLRGSNPTRTVTTTVGETELRFAPEEIEKFELRGKVKRQDSNKLPDPYIISQILRGAGSYLDHHDVTTLLGITLKDKWVTVSYQTSAGRLEQAKQDLEYFYNYWVKMYMRRSNRPRIPPPSDPTLYVNWESIRNAHRFWNIPG*
F24TB_115173893	3300000550	Soil	RFVRELLRGSSNPPSLTSKKGQVELRFSSEDIERFDLRGKSQRQDSSKMPDPYSVSQILRGAGAFLDHRSVANLVGISLSGNLVTVSYQTGEGRLEQAQQDLEYFYNYWVKMYLHRSNRTKLPAPSEPTVLVTWQGIQNA*
F24TB_128955261	3300000550	Soil	RGRVKRQDADKMPDPYSISQILRGAGSYLDNRDVTNLVGITLKERWVTVSYQTAEGRLEQAKQDLEYFYNYWVKMYMRRSNRTKLPPPSDPTLFVSWEGIQKAHRLSNVPG*
F14TC_1009352302	3300000559	Soil	MDLRFSPDEIEQFDARGKVKRQDSSKMPDPYSISQILRGAGSYLDNRDVATLSAISLCGKWVTVTYESAEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPREPTLFVTWKGIQNAHGVGNVAG*
F14TC_1074476331	3300000559	Soil	YVVTGRAIVPPESVRFSFSRFVRELLRGSDPTATLTTRAGQIDLRFTLEEIERFDVRGRVKREDASKMPDPYSVSQILRGAGSYLDNRDATSLVGITLKDRWVTVNYQTAEGRLAQAKQDLEYFYDYWVKMYMRRSNRAKLPPPADPTLFVSWEGIQRAHRLSNVAG*
KanNP_Total_noBrdU_T14TCDRAFT_10224771	3300000596	Soil	RFSPEEIEKFDVRGRVKRQDADKMPDPYSISQILRGAGSYLDNRDVTNLVGITLKERWVTVSYQTAEGRLEQAKQDLEYFYNYWVKMYMRRSNRTKLPPPSDPTLFVSWEGIQKAHRLSNVPG*
JGI11643J11755_116315743	3300000787	Soil	PEEIEHFDLRGQIKRQDSGKMPDPYSISQILRGAGSYLDRREVTSLVSISLKGKWLSLRYQTATGRLEQAQQDLEYFYDYWVKMYLRRSNRMKPPALSDPTVVVSWHDIRTRVVSTT*
JGI1027J11758_129239593	3300000789	Soil	EQFXARGXVKRQDSSKMPDPYSISQILRGTGSYLDNRDVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG*
JGI11643J12802_118370501	3300000890	Soil	ELLRGFSGRPALTTDSKVGLRFSPEEIEHFDLRGQIKRQDSGKMPDPYSISQILRGAGSYLDRREVTSLVSISLKGKWLSLRYQTATGRLEQAQQDLEYFYDYWVKMYLRRSNRMKPPALSDPTVVVSWHDIRTRVVSTT*
JGI10216J12902_1005939502	3300000956	Soil	QIDLRFSPEEIEKFDVRGRVKRQDAGKMPDPYSISQILRGAGSYLDNRDATNLVGITLKERWVTVSYQTAEGRLEQAKQDLEYFYNYWVKMYMRRSNRTKLPPPSDPTLFVSWEGIQKAHHLSDVPG*
JGI10216J12902_1020280172	3300000956	Soil	QIDLRFSPEEIEKFDVRGRVKRQDADKMPDPYSISQILRGAGSYLDNRDVTNLVGITLKERWVTVSYQTAEGRLEQAKQDLEYFYNYWVKMYMRRSNRTKLPPPSDPTLFVSWEGIQKAHRLSNVPG*
JGI10216J12902_1052579711	3300000956	Soil	MPDPYSVSQILRGAGAFLDHRSVANLVGISLSGNLVTVSYQTGEGRLEQAQQDLEYFYNYWVKMYLHRSNRTKLPAPSEPTVLVTWQGIQNA*
F14TB_1044439711	3300001431	Soil	DKMADPYSISQILRGAGSYLDNRDVTNLVGITLKEEWVTVSYQTAEGRLEQAKQDLEYFYNYWVKMYMRRSNRTKLPPPSDPTLFVSWEGIQKAHRLSNVPG*
soilL1_101883542	3300003267	Sugarcane Root And Bulk Soil	ARGKNKRQDPGRMPDPYSISQILRGAGSYLDNREVAVLSAISLRGKWVTVTYENADGRLEQAQQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWEGMRHAHRVSNVPG*
Ga0055467_100809031	3300003996	Natural And Restored Wetlands	EGQVDLRFSPDEIECFDVRGKIKRQDPNKMPDPYSISQILRGAGSYLDNRDVTTLIGISLKGKWVTVNYQTAEGRLEQAQQDLEYFYDYWVKMYLRRSNRAKALPMSDPTLFVTWEGMRRAHRISNVPG*
Ga0055472_100194442	3300003998	Natural And Restored Wetlands	FVRELLRGAAGRAAVTCTDSQIDLRFSPEEIERFDVRGRIRRQNGDKMPDPYSISQILRGAGSYLDHRDVTSLVGISLKGKWVTVAYQTAEGRLEQAQQDLEYFYDYWVKMYLRRSNRAKLPSPSEPTVFVTWRGIQKVPGISNVPG*
Ga0055469_101961391	3300003999	Natural And Restored Wetlands	LVTGRAVSVENVRFSFPRFVRELLRGAAGRAAVTCTDSQIDLRFSPEEIERFDVRGRIRRQNGDKMPDPYSISQILRGAGSYLDHRDVTSLVGISLKGKWVTVAYQTAEGRLEQAQQDLEYFYDYWVKMYLRRSNRAKLPSPSEPTVFVTWRGIQKVPGISNVPG*
Ga0062595_1012842562	3300004479	Soil	MPDPYSISQILRGTGSYLDNRDVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG*
Ga0062594_1016201461	3300005093	Soil	IKFSFSRFLRELFQGSMPRTTLTYAQNQMDLRFSPDEIEQFDARGKVKRQDSSKMPDPYSISQILRGTGSYLDNRDVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG*
Ga0070680_1003441283	3300005336	Corn Rhizosphere	ELFHGTLPRTTLTYSQDQMDLTFSPEEIHQFDARGKGKRQDPNKMPDPYSISQILRGAGSYLDNRDVATLSAISLRDKWVTVVYESVDGRMEQAKQDLEYFYDYWVKMYMRRSNRTKMAPPSEPTVFVTWARHAHQISNVPG*
Ga0070669_1019080441	3300005353	Switchgrass Rhizosphere	KMPDPYSISQILRGAGSYLDNRDVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG*
Ga0070674_1015728471	3300005356	Miscanthus Rhizosphere	KVKRQDSSKMPDPYSISQILRGTGSYLDNRDVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG*
Ga0070711_1010475902	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	GIYVVTGRAVTADEIKFSFSRFLRELFQGSMPRTTLTYAQNQMDLRFSPDEIEQFDARGKVKRQDSSKMPDPYSISQILRGTGSYLDNRDVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG*
Ga0070700_1014937431	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VTADEIKFSFSRFLRELFQGSMPRTTLTYAQNQMDLRFSPDEIEQFDARGKVKRQDSSKMPDPYSISQILRGTGSYLDNRDVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG*
Ga0066704_107542862	3300005557	Soil	IYVVTGRAVTADRITFSFSRFMRELFRGVMPRTTLTYTQDQMHLRFSPEEIERFDVRGRVKRQDSNKMPDPYSISQILRGAGAYLDNRDVATFSGISLRGNWVTVAYQSPEGRLEQAKQDLEYFYNYWVKMYMRRSNRAKLPASSEPTLFVTWEGIQKAHRITNVPG*
Ga0066905_1007639971	3300005713	Tropical Forest Soil	TRTVTTTVGETKLRFSPEEIEKFELCGRVKRQDPNKLPDPYSISQILRGAGSYLDSHDVTTLEGITLKDKWVTVSYRTSAGRLQQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSDPTLFVKWESRYRSRLSNVPG*
Ga0075417_105534771	3300006049	Populus Rhizosphere	AFDLELKSGIYVVTGRAVAAERIRFSFSRFLRELFQGAMPRTTLTYAQNHMDLRFSPDEIEQFDARGKVKRQDSSKMPDPYSISQILRGAGSYLDNRDVATLSAISLRGKWVTVTYESAEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKMPPPSEPTLFVTWEGIQNAHRMGNVPG*
Ga0075428_1020855771	3300006844	Populus Rhizosphere	SVSQILRGAGSYLDNRDATSLVGITLKDRWVTVNYQTAEGRLAQAKQDLEYFYDYWVKMYMRRSNRAKLPPPADPTLFVSWEGIQRAHRLSNVAG*
Ga0075425_1022401071	3300006854	Populus Rhizosphere	YSLSQILRGAGSYLDNREVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWEGIRNAHRVGNIPG*
Ga0075434_1015255132	3300006871	Populus Rhizosphere	MPDPYSISQILRGAGSYLDNRDVTNLVGITLKERWVTVSYQTAEGRLEQAKQDLEYFYNYWVKMYMRRSNRTKLPPPSDPTLFVSWEGIQKAHRLSNVPG*
Ga0079219_103835222	3300006954	Agricultural Soil	YTQDQMHLRFSPEEIERFDVRGRVKRQDSNKMPDPYSISQILRGAGAYLDNRDVATFSGISLRGNWVTVAYQSPEGRLEQAKQDLEYFYNYWVKMYMRRSNRAKLPVPSEPTLFVTWEGIQKAHRITNVPG*
Ga0075435_1017381291	3300007076	Populus Rhizosphere	RFSPEEIERFDVRGRVKRQDSNKMPDPYSISQILRGAGAYLDNRDVATFSGISLRGNWVTVAYQSPEGRLEQAKQDLEYFYNYWVKMYMRRSNRAKLPVPSEPTLFVTWEGIQKAHRITNVPG*
Ga0105107_111092031	3300009087	Freshwater Sediment	AGRPAVTCTDSQIDLRFSPEEIERFDVRGRIRRQDGDKMPDPYSISQILRGAGSYLDHRDVTSLVGISLKGKWVTVAYQTAEGRLEQAQQDLEYFYDYWVKMYLRRSNRAKLPSPSEPTVFVTWRGIQKVPGISNVPG*
Ga0114129_108591083	3300009147	Populus Rhizosphere	IEQFDARGKVKRQDSSKMPDPYSISQILRGAGSYLDNRDVATLSAISLCGKWVTVTYESAEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVANVPG*
Ga0114129_113492252	3300009147	Populus Rhizosphere	IEQFDARGKVKRQDSSKMPDPYSISQILRGAGSYLDNRDVATLSAISLRGKWVTVTYESAEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTVFVTWRGIQNAHGVGNIPG*
Ga0075423_107812691	3300009162	Populus Rhizosphere	ARGKVKRQDSSKMPDPYSISQILRGAGSYLDNRDVATLSAISLCGKWVTVTYESAEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG*
Ga0134127_123815431	3300010399	Terrestrial Soil	PYSLSQILRGAGSYLDNRDITSLVGISLKGKWVTVSYRTAEGQLKQAQQDLEYFYDYWVKMYLHRSNRTKLPPPSEPTVLVTWRGIQRAPGVSNAG*
Ga0134127_130799252	3300010399	Terrestrial Soil	QDSSKMPDPYSISQILRGTGSYLDNRDVATLSSISLRGKWLTVTYESTEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG*
Ga0134121_110924482	3300010401	Terrestrial Soil	YSQNQMDLTFSPEDINQFDARGKGKRQDPSKMPDPYSISQILRGAGSYLDNRDAARLSAISLRDKWVTVAYESVDGRLEQAKQDLEYFYDYWVKMYMRRSNRTHLPPPSEPTVFVTWARHAHQISNVPG*
Ga0137364_103527663	3300012198	Vadose Zone Soil	VVTGRAVTADQIKFSFSRFLRELFQGTMPRTTLTYAQNQMDLRFSPDEIEQFDARGKVKRQDSSKMPDPYSISQILRGAGSYLDNREVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG*
Ga0137365_111861421	3300012201	Vadose Zone Soil	NQMDLRFSPDEIEQFDARGKVKRQDSSKMPDPYSISQILRGAGSYLDNRDVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYNYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHRVGNVPG*
Ga0137378_116650861	3300012210	Vadose Zone Soil	FSPEEIEKFDERGRVKRQDAGKMHDPYSISQILRGAGSYLDNRDATNLVGITLKERWVTVSYQTAEGRLEQAKQDLEYFYNYWVKMYMRRSNRTKLPPPSDPTLFVSWEGIQKAHHLSDVPG*
Ga0137367_103154731	3300012353	Vadose Zone Soil	IYVVTGRATSPLENVKFSFSRYVRELLQGADPASTVTTMASQIDLRFSPEEIEKFDVRGRVKRQDAGKMPDPYSISQILRGAGSYLDNREATNLVGITLKERWVTVSYQTAVGRLEQAKQDLEYFYNYWVKMYMRRSNRTKLPPPSDPTLFVSWEGIQKAHRLSDVPG*
Ga0137369_104175531	3300012355	Vadose Zone Soil	EEIEKFDVRGRVKRQDAGKMPDPYSISQILRGAGSYLENRAVTNLVGITLKERWVTVSYQTAEGRLEQAKQDLEYFYNYWVKMYMRRSNRTKLPPPSDPTVFVSWEGIQKAHRLSDVPG*
Ga0137368_107286141	3300012358	Vadose Zone Soil	SQFVMELIRGSSPTRTVTTTVRETDVRFSPEEIEKFDVCGRVKRENSNKMPDPYSISQILRGAGSYLDNRDVTTLVGITLKDKWVTVSYRTTEGRLEQAKQDLEYFYNYWVKMYMRRSNRAKLPPPSDPTLCVNWEGIHNAHRLSEVPG*
Ga0137368_109155291	3300012358	Vadose Zone Soil	QIDLRFSPEEIEKFDVRGRVKRQDAGKMPDPYSISQILRGAGSYLDNREATNLVGITLKERWVTVSYQTAVGRLEQAKKDLEYFYNYWVKMYMRRSNRTKLPPPSDPTLFVSWEGIQKAHRLSDVPG*
Ga0137375_106755903	3300012360	Vadose Zone Soil	GSYLDNRDVTNLVGITLKERWVTVSYQTAEGRLEQAKQDLEYFYNYWVKMYMRRSNRTKLPPPSDPTVFVSWEGIQKAHRLSDVPG*
Ga0157336_10048021	3300012477	Arabidopsis Rhizosphere	AFDLELKSGIYVVTGRAVTADEIKFSFSRFLRELFQGSMPRTTLTYAQNQMDLRFSPDEIEQFDARGRVKRQDSSKMPDPYSISQILRGTGSYLDNRDVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG*
Ga0157350_10179891	3300012499	Unplanted Soil	IEQFDARGKVKRQDSSKMPDPYSISQILRGTGSYLDNRDVATLSAISLRGKWVTVTYEIAEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG*
Ga0157351_10100212	3300012501	Unplanted Soil	QILRGAGSYLDNRDVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG*
Ga0157334_10285261	3300012509	Soil	FKFSAFDLELKSGIYVVTGRAVTADEIKFSFSRFLRELFQGSMPRTTLTYAQNQMDLRFSPDEIEQFDARGKVKRQDSSKMPDPYSISQILRGTGSYLDNRDVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG
Ga0157332_10696142	3300012511	Soil	MPRTTLAYAQNQMDLRFSPDEIEQFDARGRVKRQDSSKMPDPYSISQILRGTGSYLDNRDVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG*
Ga0157330_10028092	3300012514	Soil	LKSGIYVVTGRAVTADEIKFSFSRFLRELFQGSMPRTTLTYAQNQMDLRFSPDEIEQFDARGKVKRQDSSKMPDPYSISQILRGTGSYLDNRDVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG*
Ga0157338_10759421	3300012515	Arabidopsis Rhizosphere	KRQDSSKMPDPYSISQILRGTGSYLDNRDVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG*
Ga0157352_10004813	3300012519	Unplanted Soil	DLELKSGIYVVTGRAVTADEIKFSFSRFLRELFQGSMPRTTLAYAQNQMDLRFSPDEIEQFDARGRVKRQDSSKMPDPYSISQILRGTGSYLDNRDVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG*
Ga0137419_110907192	3300012925	Vadose Zone Soil	MRELFRGVMPRTTLTYTQDQMHLRFSPEEIERFDVRGRVKRQDSNKMPDPYSISQILRGAGAYLDNRDVATFSGISLRGNWVTVAYQSPEGRLEQAKQDLEYFYNYWVKMYMRRSNRAKLPVPSEPTLFVTWEGIQKAHRITNVPG*
Ga0164300_111804682	3300012951	Soil	DPYSISQILRGTGSYFDNRDVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG*
Ga0164299_104858381	3300012958	Soil	KFSFSRFLRELFQGSMPRTTLTYAQNQMDLRFSPDEIEQFDARGKVKRQDSSKMPDPYSISQILRGTGSYLDNRDVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYDYWVKMYMRRSNRS*
Ga0134077_101483232	3300012972	Grasslands Soil	FSRFVRELLRGADPTPTLTTTVGQIDLRFSPEEIEKFDVRGRVKRLDADKMPDPYSISQILRGAGSYLDNRDVTNLVGITLKERWVTVSYQTAEGRLEQAKQDLEYFYNYWVKMYMRRSNRTKLPPPSDPTLLVSWEGIQKAHRLSNVPG*
Ga0075320_10300811	3300014255	Natural And Restored Wetlands	SGNVKFSFSRFVRELLHGTMVRPIVTCSEGQVDLRFSPDEIECFDVRGKIKRQDPNKMPDPYSISQILRGAGLYLDNRDVTTLIGISLKGKWVTVNYQTAEGRLEQAQQDLEYFYDYWVKMYLRRSNRAKALPMSDPTLFVTWEGMRRAHRISNVPG*
Ga0075324_11335271	3300014263	Natural And Restored Wetlands	GTYLVTGRAVSAENVRFSFPRFVRELLRGAAGRPAVTCTGSQIDLRFSPEEIERFDVCGRIRRQDGGKMPDPYSISQILRGAGSYLDHRDVTSLVGISLKEKWVTVVYQTAEGRLEQAQQDLEYFYDYWVKMYLRRSNRAKLPPPSEPTVFVTWRGIQKVPGISNVPG*
Ga0134089_101081332	3300015358	Grasslands Soil	FSPEEIEKFDVRGRVKRLDADKMPDPYSISQILRGAGSYLDNRDVTNLVGITLKERWVTVSYQTAEGRLEQAKQDLEYFYNYWVKMYMRRSNRTKLPPPSDPTLFVSWEGIQKAHRLSNVPG*
Ga0187821_100516302	3300017936	Freshwater Sediment	SRFVRELLRSSTARPTLSCADNCVDLCFSPDEIEKFDLRGKVKREDANKMPDPYSISQILRGAGSYLDNRNVTTLVGISLNGKWVTVRYETPEGRLEQAKQDLEYFYDYWVKMYLRRSNRAKLPPASDPTLLVTWEGMRRAHVISNLRG
Ga0184610_11495361	3300017997	Groundwater Sediment	DLQLESGIYVVTGRAISVENVKFSFSQFVVELLRGSSPTRTVTTTVGETDLRFSPEDIEKFDIRGRVKRENSNKMPDPYSISQILRGAGSYLDNRDVTTLVGITLKDKWVTVSYRTTEGRLEQAKQDLEYFYNYWVKMYMRRSNRAKLPPPSDPTLYVNWEGIHNAHRLSDVPG
Ga0184619_105388831	3300018061	Groundwater Sediment	PYSISQILRGAGAYLDNRDVATFSGISLRGNWVTVAYQSPEGRLEQAKQDLEYFYNYWVKMYMRRSNRAKLPVPSEPTLFVTWEGIQKAHRITNVPG
Ga0184617_12189031	3300018066	Groundwater Sediment	FKFSTFDLQLESGIYVVTGRAISVENVNFSFSQFVMELIRGSSPTRTLTTTVGETDVRFSPEEIEKFDVCGRVKRENSNKMPDPYSISQILRGAGSYLDNRDVTTLVGITLKDKWVTVSYRTTEGRLEQAKQDLEYFYNYWVKMYMRRSNRAKLPPPSDPTLCVNWKGIHNAHRLSDVPG
Ga0184635_100419963	3300018072	Groundwater Sediment	KFSFSRFLRELFQGSMPRTTLTYAQNQMDLRFSPDEIEQFDARGKVKRQDSSKMPDPYSISQILRGTGSYLDNRDVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG
Ga0184612_104404421	3300018078	Groundwater Sediment	ELIRGSSPTRTVTTTVGETDLRFSPEEIEKFDIRGRIKRENSNKMPDPYSISQILRGAGSYLDNRDVTTLVGITLKDKWVTVSYRTTKGRLEQAKQDLEYFYNYWVKMYMRRSNRAKLPPPSDPTLFVNWEGIHNAHRFSDVPG
Ga0190265_107009561	3300018422	Soil	RFLRELLRGAPVRTTVSGSSNPVELHFSPEEIERFDVRGRRQRQDSSKMPDPYSISQILRGAGSYVDSRDGSTLMGISLQGNWVAVSYQTAEGRLEQAKQDLEYFYNFWVKMYLRRSNRSKLSPARDPTVFVTWRGIQKAPKIFNVPA
Ga0190265_130109531	3300018422	Soil	QILRGAGSYVDSRDGTTLMGISLQGNWVAVSYQTAEGRLQQAKRDLEYFYNYWVKMYLRRSNRSKLPPPSDPTVFVTWRGIQKAHEIFGVPG
Ga0066667_109234722	3300018433	Grasslands Soil	LRFSPAEIEQFDFRGRVKRRDSSRLPDPYSVSQILRGAGSYLDNRDIANLVGITLRGKWVSVSYETAEGRLEEAKQDLEYFYNYWVKMYMRRSNRTKLAAPSEPTLFVTWKGIQKAHTVAEAP
Ga0190269_115658771	3300018465	Soil	EEIEHFDLRGQIKRQDSGKMPDPYSISQILRGAGSYLDRREVTSLVSISLKGKWLSVRYQTATGRLEQAQQDLEYFYDYWVKMYLRRSNRVKPPPPSDPTVLVTWQGIQRAHGISTIG
Ga0190264_101924312	3300019377	Soil	MPDPYSISQILRGAGSYVDSRDGTTLMGISLQGNWVAVSYQTAEGRLQQAKRDLEYFYNYWVKMYLRRSNRSKVPPPSDPTVFVTWRGIQKAHEIFGVPG
Ga0137408_11606341	3300019789	Vadose Zone Soil	TTVGQIDLRFSPEEIEKFDVRGRVKRLDADKMPDPYSISQILRGAGSYLDNRDVTNLVGITLKERWVTVSYQTAEGRLEQAKQDLEYFYNYWVKMYMRRSNRTKLPPPSDPTLFVSWEGIQKAHRLSNVPG
Ga0137408_11651481	3300019789	Vadose Zone Soil	PDPYSISQILRGAGSYLDNRDVTNLVGITLKERWVTVSYQTAEGRLEQAKQDLEYFYNYWVKMYMRRSNRTKLPPPSDPTLFVSWEGIQKAHRLSNVPG
Ga0193735_10031057	3300020006	Soil	FDLELQNGIYVVTGRAVTADRITFSFSRFMRELFRGVMPRTTLTYTQDQMHLRFSPEEIERFDVRGRVKRQDSNKMPDPYSISQILRGAGAYLDNRDVATFSGISLRGNWVTVAYQSPEGRLEQAKQDLEYFYNYWVKMYMRRSNRAKLPASSEPTLFVTWEGIQKAHRITNVPG
Ga0224452_11279941	3300022534	Groundwater Sediment	SSPTRTVTTSIGETDLRFSPEEIEKFDVSGRVKRENSNKMPDPYSISQILRGAGSYLDNRDVTTLVGITLKDKWVTVSYRTTEGRLEQAKQDLEYFYNYWVKMYMRRSNRAKLPPPSDPTLCVNWEGIHNAHRLSDVPG
Ga0209619_100354252	3300025159	Soil	LRFSPDEIECFDVRGKIKRQDPNKMPDPYSISQILRGAGSYLDNRDVTTLIGISLKGKWVTVNYQTAEGRLEQAQQDLEYFYDYWVKMYLRRSNRAKAPPMSDPTLFVTWEGMRRAHRISNVPG
Ga0209002_101850421	3300025289	Soil	DLRFSPDEIECFDVRGKIKRQDPNKMPDPYSISQILRGAGSYLDNRDVTTLIGISLKGKWVTVNYQTAEGRLEQAQQDLEYFYDYWVKMYLRRSNRAKAPPMSDPTLFVTWEGMRRAHRISNVPG
Ga0210061_10993701	3300025537	Natural And Restored Wetlands	RFVRELLHGTMVRPIVTCSEGQVDLRFSPDEIECFDVRGKIKRQDPNKMPDPYSISQILRGAGSYLDNRDVTTLIGISLKGKWVTVNYQTAEGRLEQAQQDLEYFYDYWVKMYLRRSNRAKALPMSDPTLFVTWEGMRRAHRISNVPG
Ga0210087_100007710	3300025559	Natural And Restored Wetlands	MVRPIVTCSEGQVDLRFSPDEIECFDVRGKIKRQDPNKMPDPYSISQILRGAGSYLDNRDVTTLIGISLKGKWVTVNYQTAEGRLEQAQQDLEYFYDYWVKMYLRRSNRAKALPMSDPTLFVTWEGMRRAHRISNVPG
Ga0210143_10323541	3300025792	Natural And Restored Wetlands	ENVRFSFPRFVRELLRGAAGRAAVTCTDSQIDLRFSPEEIERFDVRGRIRRQNGDKMPDPYSISQILRGAGSYLDHRDVTSLVGISLKGKWVTVAYQTAEGRLEQAQQDLEYFYDYWVKMYLRRSNRAKLPSPSEPTVFVTWRGIQKVPGISNVPG
Ga0207684_113438001	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	ISQILRGAGAYLDNRDVATFSGISLRGNWVTVAYQSPEGRLEQAKQDLEYFYNYWVKMYMRRSNRAKLPVPSEPTLFVTWEGIQKAHRITNVPG
Ga0207707_100292327	3300025912	Corn Rhizosphere	FSPEEIHQFDARGKGKRQDPNKMPDPYSISQILRGAGSYLDNRDVATLSAISLRDKWVTVVYESVDGRMEQAKQDLEYFYDYWVKMYMRRSNRTKMAPPSEPTVFVTWARHAHQISNVPG
Ga0207691_112548621	3300025940	Miscanthus Rhizosphere	IYVVTGRAVTADEIKFSFSRFLRELFQGSMPRNTLTYAQNQMDLRFSPDEIEQFDARGKVKRQDSSKMPDPYSISQILRGTGSYLDNRDVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYDYWVKMYIRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG
Ga0207712_117234632	3300025961	Switchgrass Rhizosphere	ILRGTGSYLDNRDVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG
Ga0208532_10109151	3300026011	Rice Paddy Soil	RFSPEEIERFDVRGRIRRQNGDKMPDPYSISQILRGAGSYLDHRDVTSLVGISLKGKWVTVAYQTAEGRLEQAQQDLEYFYDYWVKMYLRRSNRAKLPSPSEPTVFVTWRGIQKVPGISNVPG
Ga0256867_101924991	3300026535	Soil	IYLVKGRAISTENVNFSFVHFVRELLRGTSSRPTLSCSDGQVDLRFSPQEIEGFDVRGRVRRRDASKMPDPYSISQILRGAGSYLDSRNVLSLNGISLKGKWVTVNYQTTDGRLEQSQQDLEYFYDYWVKMYLRRSNRTKLPPPSDPTVLVTWQGIQRVQGIPNSG
Ga0209996_10677411	3300027395	Arabidopsis Thaliana Rhizosphere	RSGTYLVTGRAVSTENVRFSFAGFVRELLRGAAGRPTLTCTDSQVDLRFSPEEIERFDLRGRVRRQDGGKMPDPYSISQILRGAGSYLDHREVTNLVAISLKGKWVTVSYQTTEGRIEQAQQDLEYFYDYWVKMYLRRSNRAKLPQPSEPTVFVTWKGIQKAPGIFNVPG
Ga0256866_12057561	3300027650	Soil	ATIPCSDSQVDLRFSPEEIERFEERGKVRRQDSGKMPDPYSISQILRGAGSYLDNRDVTTLRGISLKGKWVTVSYQTPKGRLEQAQQDIEYFYDYWVKMYLRRSNRAKLPPPSDPTVLVTWRGIQRAHGLSNARG
Ga0209983_10654201	3300027665	Arabidopsis Thaliana Rhizosphere	ELRSGTYLVTGRAVSTENVRFSFAGFVRELLRGAAGRPTLTCTDSQVDLRFSPEEIERFDLRGRVRRQDGGKMPDPYSISQILRGAGSYLDHREVTNLVAISLKGKWVTVSYQTTEGRIEQAQQDLEYFYDYWVKMYLRRSNRAKLPQPSEPTVFVTWKGIQKAPGIFNVPG
Ga0209998_100039504	3300027717	Arabidopsis Thaliana Rhizosphere	MPDPYSISQILRGAGSYLDHRDVTSLVGISLKEKWVTVVYQTAEGRLEQAQQDLEYFYDYWVKMYLRRSNRAKLPPPSEPTVFVTWQGIQKVPGISNVPG
Ga0209382_115315511	3300027909	Populus Rhizosphere	SLSVLRAIGGFFRRSDPTRRRLDCQVDLRFTPEEIEKFDLHGRSRRKDAGKTPDPYSISQILRGAGSYLDNRDVTTLRGISLKGKWVTVSYQTPEGRLEQAQQDLEYFYDYWVKMYLRRSNRAKLPPPSAPTVHVTWRGIQRAHGISNARG
Ga0299907_100617301	3300030006	Soil	TSSRPTLSCSDGQVDLRFSPQEIEGFDVRGRVRRRDASKMPDPYSISQILRGAGSYLDSRNVLSLNGISLKGKWVTVNYQTTDGRLEQSQQDLEYFYDYWVKMYLRRSNRTKLPPPSDPTVLVTWQGIQRVQGIPNSG
Ga0299906_109681991	3300030606	Soil	VRELLRGTSSQPTLSCSDSQVDLRFSPQEIEGFDVRGRVRRRDASKMPDPYSISQILRGAGSYLDSRNVLSLNGISLKGKWVTVNYQTTDGRLEQSQQDLEYFYDYWVKMYLRRSNRTKLPPPSDPTVLVTWQGIQRVQGIPNSG
Ga0302046_100302916	3300030620	Soil	RELLRGTRVRPIVSCSEGQVDLRFSPDEIECFDVRGKIKRQDPNKMPDPYSISQILRGAGSYLDNRDVTTLIGISLKGKWVTVNYQTAEGRLEQAQQDLEYFYDYWVKMYLRRSNRAKAPPMSDPTLFVTWEGMRRAHRISNVPG
Ga0307500_100193911	3300031198	Soil	LELKSGIYVVTGRAVTADEIKFSFSRFLRELFQGSMPRTTLTYAQNQMDLRFSPDEIEQFDARGKVKRQDSSKMPDPYSISQILRGTGSYLDNRDVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG
Ga0307497_104300771	3300031226	Soil	QMDLRFSPDEIEQFDARGRVKRQDSSKMPDPYSISQILRGTGSYLDNRDVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG
Ga0299913_117521101	3300031229	Soil	RAISTENVNFSFVHFVRELLRGTSSRPTLSCSDGQVDLRFSPQEIEGFDVRGRVRRRDASKMPDPYSISQILRGAGSYLDSRNVLSLNGISLKGKWVTVNYQTTDGRLEQSQQDLEYFYDYWVKMYLRRSNRTKLPPPSDPTVLVTWQGIQRVQGIPNSG
(restricted) Ga0255312_11950011	3300031248	Sandy Soil	ELRSGIYLVTGRAHSTENIKFSFSRFVRELLRGSTVPPTLTCSEGQVDLRFSPEEIERFDVRGRIKRQDPGKMPDPYSLSQILRGAGSYLDNRDIASLVGISLKGKWVTVSYQTAEGQLEQAQQDLEYFYDYWVKMYMRRSNRAKLPAPSDPTVLVTWRGIQRAPGFAK
Ga0307469_104813233	3300031720	Hardwood Forest Soil	KSGIYVVTGRAVTADEIKFSFSRFLRELFQGSMPRTTLTYAQNQMDLRFSPDEIEQFDARGKVKRQDSSKMPDPYSISQILRGTGSYLDNRDVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG
Ga0307468_1006760733	3300031740	Hardwood Forest Soil	NQMDLRFSPDEIEQFDARGRVKRQDSSKMPDPYSISQILRGTGSYLDNRDVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG
Ga0310885_109036321	3300031943	Soil	DEIEQFDARGKVKRQDSSKMPDPYSISQILRGAGSYLDNRDVATLSAISLCGKWVTVTYESAEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVANVPG
Ga0307470_117868351	3300032174	Hardwood Forest Soil	GRAVTADEIKFSFSRFLRELFQGSMPRTTLTYAQNQMDLRFSPDEIEQFDARGKVKRQDSSKMPDPYSISQILRGTGSYLDNRDVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG
Ga0307471_1032951741	3300032180	Hardwood Forest Soil	MDLRFSPDEIEQFDARGRVKRQDSSKMPDPYSISQILRGTGSYLDNRDVATLSAISLRGKWVTVTYESTEGRLEQAKQDLEYFYDYWVKMYMRRSNRSKLPPPSEPTLFVTWKGIQNAHGVGNVPG
Ga0310811_102787611	3300033475	Soil	RIKFTFSRFLRDLFHGTMPRTTLTYSQDQMDLTFSPEDINQFDARGKGKRQDPNKMPDPYSISQILRGAGSYLDNRDAARLSAISLRDKWVTVAYESVDGRLEQAKQDLEYFYDYWVKMYMRRSNRTHLPPPSEPTVFVTWARHAHQISNVPG
Ga0316620_118269291	3300033480	Soil	VKREDANKMPDPYSISQILRGAGSYLDNRDVTTLVGVSLNGKWVTVRYETPEGRLEQAKQDLEYFYDYWVKMYLRRSNRAKLPPASDPTLLVTWEGMRRAHVISNLRG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters