NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F091014

Metagenome / Metatranscriptome Family F091014

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F091014
Family Type Metagenome / Metatranscriptome
Number of Sequences 108
Average Sequence Length 104 residues
Representative Sequence VIGRRVQSVGEIEQPGDYCGPVEGYTGDLEACFFLKPNARDEGVPPHARSVQHVCFPPHTYRECPDGSLEIRASISNLLRGDTTGQSDDGWHGYLDEGHVWRQV
Number of Associated Samples 96
Number of Associated Scaffolds 108

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 71.96 %
% of genes near scaffold ends (potentially truncated) 17.59 %
% of genes from short scaffolds (< 2000 bps) 66.67 %
Associated GOLD sequencing projects 86
AlphaFold2 3D model prediction Yes
3D model pTM-score0.87

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (65.741 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa
(19.444 % of family members)
Environment Ontology (ENVO) Unclassified
(32.407 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(47.222 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 5.30%    β-sheet: 31.06%    Coil/Unstructured: 63.64%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.87
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Structural matches with PDB biological assemblies

PDB IDStructure NameBiol. AssemblyTM-score
2c4iCRYSTAL STRUCTURE OF ENGINEERED AVIDIN10.51509

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 108 Family Scaffolds
PF04860Phage_portal 1.85
PF03237Terminase_6N 0.93
PF04466Terminase_3 0.93
PF05065Phage_capsid 0.93
PF05724TPMT 0.93
PF07463NUMOD4 0.93
PF04233Phage_Mu_F 0.93
PF12773DZR 0.93
PF135632_5_RNA_ligase2 0.93
PF11195DUF2829 0.93
PF03354TerL_ATPase 0.93
PF07030Phage_Mu_Gp36 0.93
PF13659Obsolete Pfam Family 0.93
PF00486Trans_reg_C 0.93
PF04883HK97-gp10_like 0.93
PF06074DUF935 0.93
PF03496ADPrib_exo_Tox 0.93
PF03167UDG 0.93
PF07352Phage_Mu_Gam 0.93
PF13392HNH_3 0.93
PF01555N6_N4_Mtase 0.93
PF13091PLDc_2 0.93
PF05708Peptidase_C92 0.93
PF13481AAA_25 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 108 Family Scaffolds
COG0692Uracil-DNA glycosylaseReplication, recombination and repair [L] 0.93
COG0863DNA modification methylaseReplication, recombination and repair [L] 0.93
COG1041tRNA G10 N-methylase Trm11Translation, ribosomal structure and biogenesis [J] 0.93
COG1573Uracil-DNA glycosylaseReplication, recombination and repair [L] 0.93
COG1783Phage terminase large subunitMobilome: prophages, transposons [X] 0.93
COG2189Adenine specific DNA methylase ModReplication, recombination and repair [L] 0.93
COG3663G:T/U-mismatch repair DNA glycosylaseReplication, recombination and repair [L] 0.93
COG4383Mu-like prophage protein gp29Mobilome: prophages, transposons [X] 0.93
COG4387Mu-like prophage protein gp36Mobilome: prophages, transposons [X] 0.93
COG4396Mu-like prophage host-nuclease inhibitor protein GamMobilome: prophages, transposons [X] 0.93
COG4626Phage terminase-like protein, large subunit, contains N-terminal HTH domainMobilome: prophages, transposons [X] 0.93
COG4653Predicted phage phi-C31 gp36 major capsid-like proteinMobilome: prophages, transposons [X] 0.93
COG5585Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1Mobilome: prophages, transposons [X] 0.93

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms68.52 %
UnclassifiedrootN/A31.48 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001449|JGI20208J14878_1000734All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria7024Open in IMG/M
3300001633|JGI20241J16302_101983All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta605Open in IMG/M
3300002906|JGI25614J43888_10186608Not Available560Open in IMG/M
3300005468|Ga0070707_100010312All Organisms → cellular organisms → Bacteria → Terrabacteria group8699Open in IMG/M
3300005537|Ga0070730_10094803All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae2072Open in IMG/M
3300005542|Ga0070732_10005808All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria6708Open in IMG/M
3300005602|Ga0070762_10387151All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta898Open in IMG/M
3300005995|Ga0066790_10191029Not Available876Open in IMG/M
3300007255|Ga0099791_10356453All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta701Open in IMG/M
3300009089|Ga0099828_11625855All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta569Open in IMG/M
3300009520|Ga0116214_1423775All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta521Open in IMG/M
3300009610|Ga0105340_1001946Not Available9067Open in IMG/M
3300009610|Ga0105340_1101355All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta1157Open in IMG/M
3300009700|Ga0116217_10824470All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta571Open in IMG/M
3300010341|Ga0074045_11027108Not Available517Open in IMG/M
3300010373|Ga0134128_11153134All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta855Open in IMG/M
3300010379|Ga0136449_101931553All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium875Open in IMG/M
3300010379|Ga0136449_103364293Not Available613Open in IMG/M
3300010876|Ga0126361_10121461All Organisms → Viruses → Predicted Viral1771Open in IMG/M
3300010877|Ga0126356_10229691All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium1388Open in IMG/M
3300010880|Ga0126350_10369775Not Available569Open in IMG/M
3300011270|Ga0137391_10278259All Organisms → Viruses → Predicted Viral1446Open in IMG/M
3300011434|Ga0137464_1128616Not Available757Open in IMG/M
3300011438|Ga0137451_1000033All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria45319Open in IMG/M
3300011441|Ga0137452_1008524All Organisms → cellular organisms → Bacteria3107Open in IMG/M
3300012035|Ga0137445_1005908All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta2069Open in IMG/M
3300012140|Ga0137351_1057516All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta554Open in IMG/M
3300012179|Ga0137334_1108732All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta626Open in IMG/M
3300012205|Ga0137362_11400646Not Available585Open in IMG/M
3300012206|Ga0137380_10000046All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia68883Open in IMG/M
3300012207|Ga0137381_10013089All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae6403Open in IMG/M
3300012207|Ga0137381_10490906Not Available1072Open in IMG/M
3300012207|Ga0137381_10492296All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta1070Open in IMG/M
3300012209|Ga0137379_10000384All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia38907Open in IMG/M
3300012211|Ga0137377_11055605All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia743Open in IMG/M
3300012349|Ga0137387_10281982All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta1200Open in IMG/M
3300012356|Ga0137371_10849708All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta695Open in IMG/M
3300012357|Ga0137384_10972937All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium683Open in IMG/M
3300012363|Ga0137390_10018909Not Available6337Open in IMG/M
3300013105|Ga0157369_10134040All Organisms → cellular organisms → Bacteria2623Open in IMG/M
3300014162|Ga0181538_10353054Not Available790Open in IMG/M
3300014201|Ga0181537_10052770All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2753Open in IMG/M
3300014489|Ga0182018_10401811Not Available733Open in IMG/M
3300014495|Ga0182015_10054086All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium2921Open in IMG/M
3300014501|Ga0182024_10000747Not Available84831Open in IMG/M
3300014501|Ga0182024_10011859All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia17384Open in IMG/M
3300014657|Ga0181522_10187714All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta1214Open in IMG/M
3300015209|Ga0167629_1000034Not Available35973Open in IMG/M
3300019890|Ga0193728_1026295All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora alfalfae2903Open in IMG/M
3300020020|Ga0193738_1111257All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta773Open in IMG/M
3300020021|Ga0193726_1029001All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium2757Open in IMG/M
3300020021|Ga0193726_1032600All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium2574Open in IMG/M
3300021088|Ga0210404_10001566All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae9742Open in IMG/M
3300021168|Ga0210406_10280851All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta1359Open in IMG/M
3300021181|Ga0210388_11729196Not Available517Open in IMG/M
3300021402|Ga0210385_10333285All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1130Open in IMG/M
3300021433|Ga0210391_11502181Not Available516Open in IMG/M
3300022506|Ga0242648_1001524All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta1908Open in IMG/M
3300025574|Ga0208717_1000075All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia62751Open in IMG/M
3300025703|Ga0208357_1196993All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta541Open in IMG/M
3300025913|Ga0207695_10406847All Organisms → Viruses → Predicted Viral1245Open in IMG/M
3300025915|Ga0207693_11083881Not Available609Open in IMG/M
3300025922|Ga0207646_10019741All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta6256Open in IMG/M
3300026294|Ga0209839_10122150Not Available876Open in IMG/M
3300026319|Ga0209647_1165789Not Available888Open in IMG/M
3300026507|Ga0257165_1096026Not Available549Open in IMG/M
3300026551|Ga0209648_10003945All Organisms → cellular organisms → Bacteria12547Open in IMG/M
3300026557|Ga0179587_10713965Not Available660Open in IMG/M
3300027067|Ga0208602_1003547All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta1802Open in IMG/M
3300027533|Ga0208185_1033978All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta1248Open in IMG/M
3300027842|Ga0209580_10078379All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta1576Open in IMG/M
3300027895|Ga0209624_10085922All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta2041Open in IMG/M
3300028742|Ga0302220_10122613All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium1005Open in IMG/M
3300028780|Ga0302225_10520910Not Available554Open in IMG/M
3300028789|Ga0302232_10019815All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium3819Open in IMG/M
3300028800|Ga0265338_10001966All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia32017Open in IMG/M
3300028801|Ga0302226_10048637All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium2028Open in IMG/M
3300028808|Ga0302228_10168266Not Available1005Open in IMG/M
3300028877|Ga0302235_10015319All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura4387Open in IMG/M
3300028877|Ga0302235_10219655Not Available834Open in IMG/M
3300029882|Ga0311368_10526155All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium846Open in IMG/M
3300029943|Ga0311340_10279502All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium1606Open in IMG/M
3300029943|Ga0311340_11125480Not Available637Open in IMG/M
3300030007|Ga0311338_10502579Not Available1271Open in IMG/M
3300030399|Ga0311353_10887039Not Available754Open in IMG/M
3300030490|Ga0302184_10010557All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium5328Open in IMG/M
3300030520|Ga0311372_11424479Not Available862Open in IMG/M
3300030580|Ga0311355_10683561Not Available957Open in IMG/M
3300030617|Ga0311356_10292443All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium1635Open in IMG/M
3300030618|Ga0311354_10576257All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1098Open in IMG/M
3300030618|Ga0311354_11333864Not Available642Open in IMG/M
3300030707|Ga0310038_10449350All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta552Open in IMG/M
3300031234|Ga0302325_11496930All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium870Open in IMG/M
3300031236|Ga0302324_101917009All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium747Open in IMG/M
3300031525|Ga0302326_12484553Not Available651Open in IMG/M
3300031670|Ga0307374_10089623All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2755Open in IMG/M
3300031672|Ga0307373_10189001All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1503Open in IMG/M
3300031823|Ga0307478_11290878Not Available607Open in IMG/M
3300032160|Ga0311301_11046592All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium1071Open in IMG/M
3300032160|Ga0311301_12230268Not Available627Open in IMG/M
3300032174|Ga0307470_10460381All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium917Open in IMG/M
3300032805|Ga0335078_10003721All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia22695Open in IMG/M
3300032805|Ga0335078_10229469All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2551Open in IMG/M
3300032805|Ga0335078_11079277All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria941Open in IMG/M
3300032895|Ga0335074_10056347All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta5385Open in IMG/M
3300033475|Ga0310811_10704415All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta975Open in IMG/M
3300033547|Ga0316212_1014038All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1136Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa19.44%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil13.89%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil8.33%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil6.48%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil6.48%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.63%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil3.70%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog2.78%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil2.78%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil2.78%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.78%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil2.78%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.78%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil2.78%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.85%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil1.85%
PalsaEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa1.85%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost1.85%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil1.85%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland0.93%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.93%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.93%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.93%
RootsHost-Associated → Plants → Roots → Unclassified → Unclassified → Roots0.93%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.93%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.93%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere0.93%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001449Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 shallowEnvironmentalOpen in IMG/M
3300001633Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF007EnvironmentalOpen in IMG/M
3300002906Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cmEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005537Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1EnvironmentalOpen in IMG/M
3300005542Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005995Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050EnvironmentalOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009520Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaGEnvironmentalOpen in IMG/M
3300009610Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700EnvironmentalOpen in IMG/M
3300009700Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaGEnvironmentalOpen in IMG/M
3300010341Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010876Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010877Boreal forest soil eukaryotic communities from Alaska, USA - W3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010880Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300011434Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT814_2EnvironmentalOpen in IMG/M
3300011438Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT500_2EnvironmentalOpen in IMG/M
3300011441Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT513_2EnvironmentalOpen in IMG/M
3300012035Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT338_2EnvironmentalOpen in IMG/M
3300012140Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT690_2EnvironmentalOpen in IMG/M
3300012179Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT262_2EnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012356Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300013105Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaGHost-AssociatedOpen in IMG/M
3300014162Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaGEnvironmentalOpen in IMG/M
3300014201Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaGEnvironmentalOpen in IMG/M
3300014489Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaGEnvironmentalOpen in IMG/M
3300014495Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014657Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaGEnvironmentalOpen in IMG/M
3300015209Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G3B, Proglacial river margin, by glacier terminus)EnvironmentalOpen in IMG/M
3300018030Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100EnvironmentalOpen in IMG/M
3300019890Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1EnvironmentalOpen in IMG/M
3300020020Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1EnvironmentalOpen in IMG/M
3300020021Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1EnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300022506Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-26-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300025574Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 shallow (SPAdes)EnvironmentalOpen in IMG/M
3300025703Arctic peat soil from Barrow, Alaska - NGEE Surface sample F52-2 deep-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025913Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025915Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026294Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)EnvironmentalOpen in IMG/M
3300026319Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)EnvironmentalOpen in IMG/M
3300026507Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-BEnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027067Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF007 (SPAdes)EnvironmentalOpen in IMG/M
3300027533Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)EnvironmentalOpen in IMG/M
3300027842Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300028742Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_3EnvironmentalOpen in IMG/M
3300028780Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2EnvironmentalOpen in IMG/M
3300028789Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3EnvironmentalOpen in IMG/M
3300028800Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaGHost-AssociatedOpen in IMG/M
3300028801Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3EnvironmentalOpen in IMG/M
3300028808Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2EnvironmentalOpen in IMG/M
3300028877Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3EnvironmentalOpen in IMG/M
3300029882III_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300029943I_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300030007I_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030399II_Palsa_E2 coassemblyEnvironmentalOpen in IMG/M
3300030490Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_3EnvironmentalOpen in IMG/M
3300030520III_Palsa_N2 coassemblyEnvironmentalOpen in IMG/M
3300030580II_Palsa_N1 coassemblyEnvironmentalOpen in IMG/M
3300030617II_Palsa_N2 coassemblyEnvironmentalOpen in IMG/M
3300030618II_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030707Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)EnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031236Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1EnvironmentalOpen in IMG/M
3300031525Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3EnvironmentalOpen in IMG/M
3300031670Soil microbial communities from Risofladan, Vaasa, Finland - OX-3EnvironmentalOpen in IMG/M
3300031672Soil microbial communities from Risofladan, Vaasa, Finland - OX-2EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300032895Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3EnvironmentalOpen in IMG/M
3300033475Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YCEnvironmentalOpen in IMG/M
3300033547Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE1Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI20208J14878_1000734113300001449Arctic Peat SoilVIGRRVQSLAEIERPGDYFGPAKGWTGDLPAVFFLKPNARDEGVPPRARSVQHVCFPPHTYRECPDGSLEIRNSISNLMAGDTTGASDDGWHGYLDEGHVWRQV*
JGI20241J16302_10198313300001633Forest SoilMTGRRVGSFAEIERPGDYYGPVRGYTGDKEACFFLKPNARDEGVPPRSRSLQHVCFPPHTYRECPDGSLEIRNSIGSMISGDPATDDGWHGYLDEGHVWRQV*
JGI25614J43888_1018660823300002906Grasslands SoilMIGRRVQSFAEIEQPGDYFGPLRGYTDDKEACFFLKPNARDAGAPPCARSVQHVTFPPHTYRECPDGSLEIRASIGSVVGGEDDGWHGYLDEGHTWRQV*
Ga0070707_10001031233300005468Corn, Switchgrass And Miscanthus RhizosphereMIGRRLPVVEGKMTWPTEPGDYCGPVIGYTGDLPAVFFLKPNARDADAPISARSVQHVTSPPHTFRECADGSLEIRNSIGETKAHAVGIPDIDIPDGWHGYLDEGHVWRTV*
Ga0070730_1009480323300005537Surface SoilMIGRRVASFAEIERPGDYYGPAPYGDVQVCWFLKPNARDPDAPPRARSIQHVNFPPHTYRECPDGSLEIRNSIGDTAGTSTESDGWHGFLDEGHVWRQV*
Ga0070732_1000580853300005542Surface SoilVIGRRLPVVDGRVTMPEQPGDYCGPVHGYTGDLPAVFFLKPNARDADAPISARSVQHVTSPPHTFRECADGSLEIRNSIGETKTHAVGVPDIDIPDGWHGYLDEGHVWRKV*
Ga0070762_1038715123300005602SoilVIGRRVASIGEIERPGDYFGPVKGYTGDLEACFFLKPNARDEGVPPRSRSLQHVTFPPHTYRECPDGSLEIRASISNLVAGDVDGSSDDGWHGYLDEGHIWRQV*
Ga0066790_1019102913300005995SoilMIGRRVGSIGELEKPGDYFGPAKGYTGDAPAVFFLKPNARDEGAPPHARSVQHVCSPPHTFRECPDGSLEIRNSISNLMAGDPDGHTDDGWHGYLDEGHAWRQA*
Ga0099791_1035645323300007255Vadose Zone SoilMSGGSMTGRRVRRIGDIEKPGDYCGPVKGWTGDLEACFFLKPNARDEGVPPHARSVQHVCFPPHTYRECPDGSLEIRASIGNLLAGDTTGQSDDGWHGYLDEGHVWRQV*
Ga0099828_1162585533300009089Vadose Zone SoilMKGRRLPVLEGKRTMPELPGDYCGPVRGYTGDLEACFFLKPNARDTDASAIARSIQHVTFPPHTYRECADGSLEIRNSLGNIHHCGDGVDRDDGWHGFLDEG
Ga0116214_142377513300009520Peatlands SoilVIGRRVQSVGEIEQPGDYCGPVEGYTGDLEACFFLKPNARDEGVPPHARSVQHVCFPPHTYRECPDGSLEIRASISNLLRGDTTGQSDDGWHGYLDEGHVWRQV*
Ga0105340_1001946133300009610SoilMTQSPKPKPTLVGRRVSTVEEIVNPGDYCGPIRGYTGDALSCFFLKPNARNEDAPPAARSIQHVDFPPHTFRECEDGSLEIRASIGDTAGKSTVSDGWHGFLNEGHLWVEC*
Ga0105340_110135533300009610SoilMTQSPKPKPPLVGRRVSTVEEIVNPGDYCGPIRGYTGDALSCFFLKPNARDEDAPSRARSIQHVDFPPHTFRECDDGSLEIRASIGDTAGVSIISDGWHGFLNEGHLWVEC*
Ga0116217_1082447013300009700Peatlands SoilVIGRRVASVGEIEQPGDYCGPVKGYTGDLEACFFLKPNARDEGVPPRSVQHVCFPPHTYRECPDGSLEIRASISNLLRGDTTGQSDDGWHGYLDEGHVWRQV*
Ga0074045_1102710813300010341Bog Forest SoilLFDSGDLKPFIEHAIRRRKMIGRRVKSVAEVVQPGDYCGPIEGWCSDPKLECCVFLKPNARDSNAPRRARSLQHVAFPPHKYRECPDGSLEIRESISDLTARGGDSDGWHGYLDEGHIWRKV*
Ga0134128_1115313423300010373Terrestrial SoilVIGRRVSSFGEVERPGDYFGPVKGYTGDLEACFFLKPNARDEGIPPRARSVQHICFPPHSYRECPDGSLEIRPSISNLTSRGGPESDDGWHGYLDEGHTWRQV*
Ga0136449_10193155313300010379Peatlands SoilVIGRRVQSVGEIEQPGDYCGPVEGYTGDLEACFFLKPNARDEGVPPHARSVQHVCFPPHTYRECPDGSLEIRASISNLLAGDTTGQSDDGWHGYLDESHV
Ga0136449_10336429323300010379Peatlands SoilVIGRRVGSMAEIEMPGDYFGPAKGWTGDLEACFFLKPNARDEGVPPHARSVQHVCFPPHTYRECPDGSLEIRASISSLLRGDTTGQSDDGWHGYLDEGHVWRQV*
Ga0126361_1012146143300010876Boreal Forest SoilVIGRRVGSLGGIERPGDYCGPIKGYTGDEEACFFLKPNARDEGVPPRARSLQHVCFPPHTYRECPDGSLEVRASIGNLIGGDPATDDGWHGYLDEGHVWRQV*
Ga0126356_1022969123300010877Boreal Forest SoilMIGRRVQSFAEIKQPGDYFGPTTEYTGIPAVFFLKPNARDEGAPPAARSVQHVCSPPHTFRECGDGSLEIRASISNLLRGDTDGRTDDGWHGYLDEGHSWRQV*
Ga0126350_1036977523300010880Boreal Forest SoilVADGEGRVIGRRVSSIAEIEQPGDYFGPTTGYTGDLPAVFFLKPNARDPGARPEARSVQHVCSPPHTFRECPDGSLEIRNSISNLLRGDTDGRTDDGWHGYLNEGHEWRQV*
Ga0137391_1027825913300011270Vadose Zone SoilMAEIEQPGDYFGPVKGYTGELEACFFLKPNARDEGVPPQARSVQHVCFPPHTYRECPDGSLEIQPSISNLVRGDETGQSDDGWHGYLDEGKTWRQV*
Ga0137464_112861623300011434SoilMTQSPKPKPTLVGRRVSTVEEIVNPGDYCGPICGYTGDALSCFFLKPNARNEDAPPAARSIQHVDFPPHTFRECEDGSLEIRASIGDTAGKSTVSDGWHGFLNEGHLWVEC*
Ga0137451_1000033343300011438SoilMIGRRVASIAEITKPGDYCGPIKGYNGDKEACYFLKPNARDADAPARARSIQHVLFPPHTYRECADGSLEIRQSIGDTAGQSTKSDGWHGFLDEGHVWRKV*
Ga0137452_100852463300011441SoilMPNPSFIGRRVSTVAEITQPGDYCGPIRGYTHDAVSCFFLKPNARDEDAPPAARSIQHVNFPPHTFRECADGSLEIRASIGDTAGNSKESDGWHGFLDEGHVWRQV*
Ga0137445_100590813300012035SoilLIGRRVKTIKQIKKPGDYCGPITGFTGDKPACFFLKPNARDADASTCAKSIQHVTFPPHTFRECPDGSLEIRASIGDTRQGGTESDGWHGFLDEGHIWRKV*
Ga0137351_105751613300012140SoilMPNPSFIGRRVSTVAEITQPGDYCGPIRGYTGDAVSCFFLKPNARDEDAPPAARSIQHVNFPPHTFRECADGSLEIRASIGDTAGNSKESDGWHGFLDEGHVWRRV*
Ga0137334_110873213300012179SoilMTQSPKPKPTLVGRRVSTVEEIVNPGDYCGPIRGYTGDALSCFFLKPNARNEDAPPAARSIQHVDFPPHTFRECEDGSLEIRASIGDTAGKSTVSDGWH
Ga0137362_1140064623300012205Vadose Zone SoilMIGRRVDSYLEIELPGDYFGPVIFGGVEVCLFLKPNARNPDAPPRAHSIQHVNFPPHTYRECPDGSLEIRNSIGDKAGKDPESDGWHGYLDEGHIWRKV*
Ga0137380_10000046543300012206Vadose Zone SoilMIGRRVRSFGEIERPGDYFGPHVGMTGDLPAVFYLKPNARDPDAPLRARGVNHVCSPPHTFRECPDGSLEIRPSISNLLAGDTTGQSDDSWHGYLDEGHIWRQV*
Ga0137381_1001308983300012207Vadose Zone SoilMIGRRVQSFAGIERPGDYFGPVVHNGIEVCWFLKPNARNENAPPRARSIQHVNFPPHTYRECPDGSLEIRNSIGDTAGGSTESDGWHGFLDEGHIWRQV*
Ga0137381_1049090623300012207Vadose Zone SoilMTAGDITQGRRVDSFGEIEKAGDYYGPYVGMTGDLPAVFFLKPNARDEGIPPRSRSVQHVCSPPHTFTENPDGTLTISPSISNLTRGDTTGETDDGWHGYLENGRWRQV*
Ga0137381_1049229633300012207Vadose Zone SoilVTAGDITQGRRVARFGEITQAGDYYGPVKDYTGDLPAVFFLKPNARDEGVPPRSRSVQHVCSPPHTFTENPDGTLTISPSISNLTRGDTAGETDDGWHGYLENGRWRQV*
Ga0137379_10000384253300012209Vadose Zone SoilMTIGRRVTSFGEIKQPGDYFGPVKGYTGDLPAVFFLKPNAWDEGVPSRARIVQHVCSPPHTFRECSDGSLEIRPSIGNLLRRDVTGQSDDGWHGYLDEGHVWRQV*
Ga0137377_1105560523300012211Vadose Zone SoilMIGRRVYSFGEIERPGDYYGPVKSGAVEVCWFLKPNARDPDAPPRARSVQHANFPPHTYRECPDRSLEIRNSIGDTAGTQRESDGWHGYLDEGHVWRRVGP*
Ga0137387_1028198223300012349Vadose Zone SoilVIGRRVGSLGAVERPGDYFGPVKGYTGDKEACFFLKPNARDEGAPPRARSVQHVCFPPHTYRECADGSLEIRNSISNLLRGDATGQSDDGWHGFLDEGHIWRQV*
Ga0137371_1084970823300012356Vadose Zone SoilMIGRRVSSFGEIERPGDYFGPVRGWTGDLEACFFLKPNARDEGAPPCARSVQHVVFPPHTYRECPDGSLEIRASIGSVVGGEDDGWHGYLDEGHTWRQV*
Ga0137384_1097293723300012357Vadose Zone SoilRSRVRSFGEIERPGDYFGPRVGMIGDLPAVFFLKPNARDPDAPPRARSVQHVCSPPHTFRECPDGSLEIRASISNLLRDDATGQSDDGWHGFLDEGHVWRQA*
Ga0137390_1001890943300012363Vadose Zone SoilMAEIEQPGDYFGPVKGYTGELEACFFLKPNARDEGVPPQARSVQHVCFPPHTYRECPDGSLEIQPSISNLVRGDETGQSDDGWHGYLDEGNTWRQV*
Ga0157369_1013404063300013105Corn RhizosphereMIGRRVASRAEIERPGDYFGPCGDYTNGIPAVFFLKPNARDADAPPGARSVQHVCSPPHTFRECPDGSLEIRASISNLLRGDTDGHSDDGWHGWLDEGHAWRQA*
Ga0181538_1035305423300014162BogMSEIITKGRRLPVQPDGRMTLPEFPGDYCGPTSSYTGSLPAVFFLKPNARDEGVPVRARSVQHVVSPPHVFRECPDGSLEIRASISDRVRGDTTGESSDGWHGFLDEGHIWRQV*
Ga0181537_1005277033300014201BogMIGRRVGSMAEIEQPGDYFGPTVGYTGDLPAVFFLKPNARDADAPEGAGSIGHVCSPPHSFRECPDGSLEIRNSISNLMRGDTDGRTDDGWHGFLDEGHSWRQA*
Ga0182018_1040181123300014489PalsaVLRVIGRRVQSFAEIERPGDYFGPTADFTGSVPAVFFLKPNARDEDAPPHARSVQHVCSPPHTFRECPDGSLEIRASISNRLAGDTDGRTDDGWHGWLDEGHVWRQA
Ga0182015_1005408653300014495PalsaVVIGRRVMRIEDIERPGDYFGPTTAYTGSLPAVFFLKPNARDEGALARSRSVQHVVSPPHTFRECPDGSLEIRNSISNLCRGDAGGNTDDGWHGYLDEGHVWRQV*
Ga0182024_10000747413300014501PermafrostVSEPITKGRRLQPIVEVDGKRHLPELEHPGDYCGPITGYNGPGQEACFFLKPNARDADAPARARSVQHVLFPPHTYRECPDGSLEIRNSIGDTAGDDKTSDGWHGYLDEGHVWRQV*
Ga0182024_10011859183300014501PermafrostMGGFGYRLRAVTLIPGRRVQSLAEIERPGDYCGPITGYTGDKEACFFLKPNARDEGVPPRARSLQHVCFPPHTYRECPDGSLEIRASIGNLIGGDPVTDDGWHGFLDEGNTWRQA*
Ga0181522_1018771443300014657BogMIGRRVQSIGAIERPGDYCGPITGYTGDEEACFFLKPNARDEDAPPCARSLQHVVFPPHSYRECPDGSLEIRASIGSVVGGEDDRWHGYLDEGHVWRQA*
Ga0167629_1000034113300015209Glacier Forefield SoilMIGRRMATIAAIEKPGDYCGPTRGFTGPDGLACFFLKPNARDADAPAIARSIQHVAFPPHTYRECEDGSLEIRASIGDTAGSRSESDGWHGYLDEGHVWRKA*
Ga0187869_1029113033300018030PeatlandMTDNMIGRRLPVVPGQHPYPQQPGDYCGPVMGYTGDKPAVFFLKPNARDPGVPPVARAVQHVTSPPHMFRECPDGSLEIRASLGDNHGAAGSDGWHGYLDEGHKW
Ga0193728_102629593300019890SoilVIGRRVQSVGEIERPGDYCGPGLFGGSTMSCFFLKPNARDEGVPPRARSVQHVDFPPHTYRECPDGSLEIRNSIGNLIGGDPATDDGWHGYLDEGHVWRQV
Ga0193738_111125713300020020SoilIGRRVATVAEVVNPGDYCGPIHGYTHDKLSCFFLKPNARDEDAPPAARSIQHVSFPPHTFRECADGSLEIRQSIGDTAGGSTESDGWHGFLDEGHVWRQV
Ga0193726_102900163300020021SoilMIGRRVQSFAEIEQPGDYFGPTTEYTGIPAVFFLKPNARDEGAPPAARSVQHVCSPPHTFRECGDGSLEIRASISNLLRGDTDGRTDDGWHGYLDEGHSWRQV
Ga0193726_103260023300020021SoilMIGRRVQSMSEIERPGDYFGPVRGYTGNLEACFFLKPNARDEDVPARSRSVQHVCSPPHTYRECPDGSLEIRNSISNLTASDVGGASDDGWHGWLDEGHSWRLA
Ga0210404_1000156633300021088SoilMLTGRRVASMGEIERPGDYFGPTGGYTNGIPAVFFLKPNARDPGVPPRARSVQHVCSPPHLFRECPDGSLEVRNSIGSMIGGDPATDDGWHGYLDEGHQWRLA
Ga0210406_1028085133300021168SoilMLTGCRVASMGEIERPGDYFGPTGGYTNGIPAVFFLKPNARDPGVPPRARSVQHVCSPPHLFRECPDGSLEVRNSIGSMIGGDPATDDGWHGYLDEGHQWRLA
Ga0210388_1172919613300021181SoilMSTMTGRRVQSFGEIERPGDYFGPTADYTGGVPAVFFLKPNARDEGVPPHARSVQHVCSPPHTFRECPDGSLEIRASISNLLAGDTTGQSDAGWHGYLDEGHVWRQV
Ga0210385_1033328513300021402SoilERAQVMSERITTGRRVASMEEIERPGDYYGPDTDYTGGVPAVVFLKPNARDEGVPPRARSVNHVCFPPHTYRECPDGSLEIRPSISNLIRGDTTGQSDDGWHGYLDEGNRWRQV
Ga0210391_1150218123300021433SoilVIGRRVSSIAEIEQPGDYFGPTTGYTGDLPAVFFLKPNARDEGAPARARSVQHVCSPPHTFRECADGSLEIQPSISNLSRRDTAGQSDDGWHGYLDEGHSWRQV
Ga0242648_100152413300022506SoilMLTGRRVASMGEIERPGDYFGPTGGYTNGIPAVFFLKPNARDPGVPPRARSVQHVCSPPHLFRECPDGSLEVRNSIGSMIGGDPATDDGWHGYLDEGHQW
Ga0208717_1000075613300025574Arctic Peat SoilVIGRRVQSLAEIERPGDYFGPAKGWTGDLPAVFFLKPNARDEGVPPRARSVQHVCFPPHTYRECPDGSLEIRNSISNLMAGDTTGASDDGWHGYLDEGHVWRQV
Ga0208357_119699313300025703Arctic Peat SoilMTDRIMHGRRVGSLAEIERPGDYCGPIKGYTGDVEACFFLKPNARDEGAPPAARSLQHVCFPPHTYRECPDGSLEIRASISNLLRGDTDGHSDDGWHGYLDEGHVWRQV
Ga0207695_1040684743300025913Corn RhizosphereVMIGRRVASLAEVEQPGDYFGPTRDFTGDLPAVFFLKPNARDADAPPGARSVQHVCSPPHTFRECPDGSLEIRASISNLLRGDTDGHSDDGWHGWLDEGHVWRQA
Ga0207693_1108388113300025915Corn, Switchgrass And Miscanthus RhizosphereMADIKRPGDYFGPVKGYTGDLEACFFLKPNARSEGARPVTRSIQHVCFPPHTYRECPDGSLEIRASISNLLRGDTTGASDDGWHGYLDEGHVWRQV
Ga0207646_10019741103300025922Corn, Switchgrass And Miscanthus RhizosphereMIGRRLPVVEGKMTWPTEPGDYCGPVIGYTGDLPAVFFLKPNARDADAPISARSVQHVTSPPHTFRECADGSLEIRNSIGETKAHAVGIPDIDIPDGWHGYLDEGHVWRTV
Ga0209839_1012215023300026294SoilMIGRRVGSIGELEKPGDYFGPAKGYTGDAPAVFFLKPNARDEGAPPHARSVQHVCSPPHTFRECPDGSLEIRNSISNLMAGDPDGHTDDGWHGYLDEGHAWRQA
Ga0209647_116578923300026319Grasslands SoilMIGRRVQSFAEIEQPGDYFGPLRGYTDDKEACFFLKPNARDAGAPPCARSVQHVTFPPHTYRECPDGSLEIRASIGSVVGGEDDGWHGYLDEGHTWRQV
Ga0257165_109602623300026507SoilVIGRRVQSFGEIEHPGDYFGPVRGGTGDLEACFFLKPNARDEGVPPRARSVQHVCFPPHTYRECPDGSLEIRNSISNLTRGDTTGQSDDGWHGYLDEGHVWRQA
Ga0209648_10003945163300026551Grasslands SoilVTVIGRRLRAADGSLRMPERPGDYCGPVTGYTGDVPAVFFLKPNARAADAPPRARSVQHVTSPPHTFRECADGSLEIRASISDLAMGGSESDGWHGWLDEGHSWRQ
Ga0179587_1071396533300026557Vadose Zone SoilMTAGDITQGRRVLSFGEIEQPGDYYGPVMFDGVEVCWFLKPNARDPGVTPRARSVQHVNFPPHTYRECPDGSLEIRNSIGDTAGTDRESDDWHGFLDEGHRWRQV
Ga0208602_100354723300027067Forest SoilMTGRRVGSFAEIERPGDYYGPVRGYTGDKEACFFLKPNARDEGVPPRSRSLQHVCFPPHTYRECPDGSLEIRNSIGSMISGDPATDDGWHGYLDEGHVWRQV
Ga0208185_103397843300027533SoilMTQSPKPKPTLVGRRVSTVEEIVNPGDYCGPIRGYTGDALSCFFLKPNARNEDAPPAARSIQHVDFPPHTFRECEDGSLEIRASIGDTAGKSTVSDGWHGFLNEGHLWVEC
Ga0209580_1007837933300027842Surface SoilVIGRRLPVVDGRVTMPEQPGDYCGPVHGYTGDLPAVFFLKPNARDADAPISARSVQHVTSPPHTFRECADGSLEIRNSIGETKTHAVGVPDIDIPDGWHGYLDEGHVWRKV
Ga0209624_1008592243300027895Forest SoilVIGRRVASIAEIEQPGDYCGPIKGYTGDLEACFFLKPNARDEDIPARSRSIQHVCFPPHTYRECPDGSLEIRASISNLLRGDTTGQSDDGWHGYLDEGHVWRQV
Ga0302220_1012261323300028742PalsaMIGRRVASMAEIEQPGDYFGPTTAYTGDLPAVFFLKPNARDAGAPPAARSVQHVCSPPHTFRECPDGSLEIRQSISNLLRGDPDGRTDDGWHGFLDEGHNWRQV
Ga0302225_1052091023300028780PalsaMIGRRVASITEIEQPGDYYGPDSGHTGGVPAVFFLKPNARDAGAPPAARSVQHVCSPPHIFRECADGSLEIRQSISNLLRGDPDGRTDDGWHGFLDEGHNWRQV
Ga0302232_1001981543300028789PalsaMIGRRVASMAEIEQPGDYFGPTTAYTGDLPAVFFLKPNARDAGAPPAARSVQHVCSPPHTFRECADGSLEIRQSISNLLRGDPDGRTDDGWHGFLDEGHNWRQV
Ga0265338_1000196663300028800RhizosphereVIGRRVGSMAEIEQPGDYFGPVVGYTGDLPAVFFLKPNARDPEARPEARSVQHVCSPPHTFRECPDGSLEIRNSISNLLRGDPDGRTDDGWHGYLNEGHEWRQV
Ga0302226_1004863713300028801PalsaFGPTTAYTGDLPAVFFLKPNARDAGAPPAARSVQHVCSPPHTFRECPDGSLEIRQSISNLLRGDPDGRTDDGWHGFLDEGHNWRQV
Ga0302228_1016826633300028808PalsaMIGRRVASMAEIEQPGDYFGPTTAYTGDLPAVFFLKPNARDAGAPPAARSVQHVCSPPHIFRECADGSLEIRQSISNLLRGDPDGRTDDGWHGFLDEGHNWRQV
Ga0302235_1001531993300028877PalsaMIGRRVSSITEIGRPGDYYGPDAGYTGGVPAVFFLKPNARDEDAPPAARSVQHVCSPPHTFRECPDGSLEIRASISNLLRGDPDGRTDDGWHGYLDEGHNWRQV
Ga0302235_1021965523300028877PalsaVIGRRVGSIAAIEEPGDYFGPDRGYTGDKEACFFLKPNARDEDAPPCARSVQHVTFPPHTYRECPDGSLEIRASIGSVVGGEDDGWHGYLDEGHVWRQV
Ga0311368_1052615533300029882PalsaSITEIEQPGDYYGPDSGHTGGVPAVFFLKPNARDAGAPPAARSVQHVCSPPHTFRECPDGSLEIRQSISNLLRGDPDGRTDDGWHGFLDEGHNWRQV
Ga0311340_1027950243300029943PalsaMIGRRVASITEIEQPGDYYGPDSGHTGGVPAVFFLKPNARDAGAPPAARSVQHVCSPPHTFRECPDGSLEIRQSISNLLRGDPDGRTDDGWHGFLDEGHNWRQV
Ga0311340_1112548023300029943PalsaRVRMIGRRVGSFADITLPGDYFGPTGEYTGGTPAVFFLKPNARDPDAPPAARSVQHVCSPPHVFRECADGSLEIRASISNLLRGDTTGQSDDGWHGWLDEGHSWRQV
Ga0311338_1050257933300030007PalsaMIGRRVGSFADITLPGDYFGPTGEYTGGTPAVFFLKPNARDPDAPPAARSVQHVCSPPHVFRECADGSLEIRASISNLLRGDTTGQSDDGWHGYLDEGHSWRQV
Ga0311353_1088703933300030399PalsaMIGRRVASMAEIEQPGDYFGPTTAYTGDLPAVFFLKPNARDAGAPPAARSVQHVCSPPHIFRECADGSLEIRQSISNLLRGDPDGRTDDGW
Ga0302184_1001055763300030490PalsaMIGRRVASMAEIEQPGDYFGPTTAYTGDLPAVFFLKPNARDAGAPPAARSVQHVCSPPHTFRECADGSLEIRASISNLLRGDPDGRTDDGWHGFLDEGHNWRQV
Ga0311372_1142447933300030520PalsaVIGRRVGSIAAIEEPGDYFGPDRGYTGDKEACFFLKPNARDEDAPPCARSVQHVTFPPHTYRECPDGSLEIRASIGSVVGGEDDGWHGYLDEGHVWRRV
Ga0311355_1068356123300030580PalsaVIGRRVASLAEVEQPGDYYGPTDRYTGGAWAVFFLKPNARDEDAPPQARSVQHVCSPPHAFRECPDGSLEIRPSVSNLLRGDTTGQSDDGWHGFLDEGHVWRQV
Ga0311356_1029244343300030617PalsaFGPTTAYTGDLPAVFFLKPNARDAGAPPAARSVQHVCSPPHIFRECADGSLEIRQSISNLLRGDPDGRTDDGWHGFLDEGHNWRQV
Ga0311354_1057625713300030618PalsaAHGHQAAAAGPDRDGHVMIGRRVGSFADITLPGDYFGPTGEYTGGTPAVFFLKPNARDPDAPPAARSVQHVCSPPHVFRECADGSLEIRASISNLLRGDTTGQSDDGWHGYLDEGHSWRQ
Ga0311354_1133386413300030618PalsaMIGRRVSSITEIGRPGDYYGPDAGYTGGVPAVFFLKPNARDEDAPPAARSVQHVCSPPHTFRECPDGSLEIRASISNLLRGDPDGRTD
Ga0310038_1044935013300030707Peatlands SoilVIGRRVASVGEIEQPGDYCGPVKGYTGDLEACFFLKPNARDEGVPPRSVQHVCFPPHTYRECPDGSLEIRASISNLLRGDTTGQSDDGWHGYLDEGHVWRQV
Ga0302325_1149693023300031234PalsaMIGRRVASLAEVEQPGDYFGPSMGYTGDLPAVFFLKPNARDEGVPPRSRSVQHVCSPPHTFRECPDGSLEIRASLSNLLARDTTGVSDDGWHGWLDEGHVWRLA
Ga0302324_10191700923300031236PalsaYFGPTTAYTGDLPAVFFLKPNARDAGAPPAARSVQHVCSPPHIFRECADGSLEIRQSISNLLRGDPDGRTDDGWHGFLDEGHNWRQV
Ga0302326_1248455313300031525PalsaMIGRRVATFAGIERPGDYFGPTTAYTNGLPAVFFLKPNARPELDEPAAPPSRAANPRARSIQHVVSPPHTFRECPDGSLEIRASLSNLLARDTTGVSDDGWHGWLDEGHVWRLA
Ga0307374_1008962313300031670SoilPVKGYTGDLEACFFLKPNARDEGVLPPARSVQHVCSPPHVFRECPDGSLEIRASISNLCAGDVDGNTDDGWHGYLDEGHVWRQV
Ga0307373_1018900123300031672SoilVIGRRVASFAEIERPGDYFGPVKGYTGDLEACFFLKPNARDEGVLPPARSVQHVCSPPHVFRECPDGSLEIRLEIRASISNLCAGDVDGNTDDGWHGYLDEGHVWRQV
Ga0307478_1129087813300031823Hardwood Forest SoilVTITPARRVQSWGEITRPGDYFGPTTEYTDGIPAVFFLKPNARDEGAPAAARSVQHVVSPPHTFRECPDGSLEIRASISNLLRGDPDGRTDDGWHGYLDEGNIWRQV
Ga0311301_1104659233300032160Peatlands SoilVIGRRVQSVGEIEQPGDYCGPVEGYTGDLEACFFLKPNARDEGVPPHARSVQHVCFPPHTYRECPDGSLEIRASISNLLAGDTTGQSDDGWHGYLDEGHVWRQV
Ga0311301_1223026823300032160Peatlands SoilMPGDYFGPAKGWTGDLEACFFLKPNARDEGVPPHARSVQHVCFPPHTYRECPDGSLEIRASISSLLRGDTTGQSDDGWHGYLDEGHVWRQV
Ga0307470_1046038123300032174Hardwood Forest SoilVIGRRVAAMADIERPGDYFGPVKGYTGDKEACFFLKPNARDEGMPPRSRSIQHVCFPPHTYRECPDGSLEIRNSISNLLRGDTTGVSDDGWHGYLDEGHVWRQV
Ga0335078_10003721153300032805SoilMTNLTPGRRVQSMAEIQHPGDYFGPTTDFTGTPAVFFLKPNARNPDTPPRGRSVGHVCSPPHTFRECPDGSLEIRPSISEYTANSPQALEFSDGWHGWLDEGNVWRQV
Ga0335078_1022946953300032805SoilMIGRRVATVGEIERRGDYCGPVKGYTGDLEACFFLKPNARDEGIPARARSIQHVCFPPHTYRECADGSLEIRPSISNLLRGDAAGRSDDGWHGWLDEGHVWRVA
Ga0335078_1107927723300032805SoilVTKLTPGRRVASLGEIERPGDYCGPIKGYTGDLEACFFLKPSARDEGVPARSRSIQHVCFPPHTYRECADGSLEIRPSISEYMSGSPHTPEFSDRWHGYLDEGNIWRRV
Ga0335074_1005634723300032895SoilMIGRRVASLGEIERPGDYCGPIKGYTGDLEACFFLKPNARDEGVPARARSINHVTFPPHTYRECPDGSLEIRASISNLLAGDVGGASDDGWHGWLDEGHVWRQA
Ga0310811_1070441523300033475SoilVIGRRVASIGEIERPGDYCGPIKGYTGDLEACFFLKPNARDEGVPPRSRSLQHVCFPPHTYRECPDGSLEIRNSIGNLIGGDPATDDGWHGYLDEGHVWRQV
Ga0316212_101403823300033547RootsMIGRRVGSIAEIELPGDYYGPDVGYTGDLPAVFFLKPNARDEGVPPHARSVQHVCSPPHTFRECPDGSLEIRASISNLLRGDTDGRTDDGWHGFLDEGHSWRQA

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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