NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F090995

Metagenome Family F090995

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F090995
Family Type Metagenome
Number of Sequences 108
Average Sequence Length 40 residues
Representative Sequence MKAREIKIRKTILFTKARPFKMKNKILDRKLKHKKQYEY
Number of Associated Samples 97
Number of Associated Scaffolds 108

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 2.83 %
% of genes near scaffold ends (potentially truncated) 45.37 %
% of genes from short scaffolds (< 2000 bps) 62.04 %
Associated GOLD sequencing projects 86
AlphaFold2 3D model prediction Yes
3D model pTM-score0.20

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (56.481 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(21.296 % of family members)
Environment Ontology (ENVO) Unclassified
(57.407 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(87.037 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 5.97%    β-sheet: 0.00%    Coil/Unstructured: 94.03%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.20
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 108 Family Scaffolds
PF06067DUF932 24.07
PF02562PhoH 1.85
PF04851ResIII 0.93
PF04545Sigma70_r4 0.93
PF00415RCC1 0.93
PF02976MutH 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 108 Family Scaffolds
COG1702Phosphate starvation-inducible protein PhoH, predicted ATPaseSignal transduction mechanisms [T] 1.85
COG1875Predicted ribonuclease YlaK, contains NYN-type RNase and PhoH-family ATPase domainsGeneral function prediction only [R] 1.85
COG5184Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteinsCell cycle control, cell division, chromosome partitioning [D] 1.85
COG3066DNA mismatch repair protein MutHReplication, recombination and repair [L] 0.93


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A56.48 %
All OrganismsrootAll Organisms43.52 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000117|DelMOWin2010_c10098582Not Available1078Open in IMG/M
3300000928|OpTDRAFT_10250241Not Available588Open in IMG/M
3300000928|OpTDRAFT_10264265Not Available1132Open in IMG/M
3300000929|NpDRAFT_10111484All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1040Open in IMG/M
3300000930|BpDRAFT_10050383Not Available3746Open in IMG/M
3300001347|JGI20156J14371_10194988All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes528Open in IMG/M
3300001352|JGI20157J14317_10018291Not Available4132Open in IMG/M
3300001450|JGI24006J15134_10172169Not Available687Open in IMG/M
3300004097|Ga0055584_100499803All Organisms → cellular organisms → Bacteria1265Open in IMG/M
3300004448|Ga0065861_1050059All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes929Open in IMG/M
3300004457|Ga0066224_1230195All Organisms → cellular organisms → Bacteria1261Open in IMG/M
3300005934|Ga0066377_10005803All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium3029Open in IMG/M
3300005941|Ga0070743_10001259All Organisms → cellular organisms → Bacteria9729Open in IMG/M
3300005941|Ga0070743_10023292All Organisms → cellular organisms → Bacteria2152Open in IMG/M
3300005941|Ga0070743_10026003All Organisms → Viruses → Predicted Viral2027Open in IMG/M
3300005946|Ga0066378_10086314All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes974Open in IMG/M
3300006752|Ga0098048_1201725All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes587Open in IMG/M
3300006790|Ga0098074_1015685Not Available2362Open in IMG/M
3300006793|Ga0098055_1392147All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes514Open in IMG/M
3300006810|Ga0070754_10028818All Organisms → cellular organisms → Bacteria3126Open in IMG/M
3300006868|Ga0075481_10002629Not Available7151Open in IMG/M
3300006869|Ga0075477_10392528Not Available541Open in IMG/M
3300006916|Ga0070750_10091720Not Available1416Open in IMG/M
3300006916|Ga0070750_10418154All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes558Open in IMG/M
3300006924|Ga0098051_1001671All Organisms → cellular organisms → Bacteria8069Open in IMG/M
3300007236|Ga0075463_10202424All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes639Open in IMG/M
3300007539|Ga0099849_1001090Not Available12668Open in IMG/M
3300007539|Ga0099849_1005350All Organisms → cellular organisms → Bacteria5867Open in IMG/M
3300007554|Ga0102820_1034248Not Available1241Open in IMG/M
3300008050|Ga0098052_1243530Not Available689Open in IMG/M
3300008470|Ga0115371_11201881Not Available1398Open in IMG/M
3300009000|Ga0102960_1017243All Organisms → cellular organisms → Bacteria2716Open in IMG/M
3300009001|Ga0102963_1029689Not Available2287Open in IMG/M
3300009130|Ga0118729_1242652All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes623Open in IMG/M
3300009172|Ga0114995_10070667All Organisms → Viruses → Predicted Viral1970Open in IMG/M
3300009409|Ga0114993_10499735Not Available904Open in IMG/M
3300009420|Ga0114994_10366744Not Available955Open in IMG/M
3300009705|Ga0115000_10872758Not Available550Open in IMG/M
3300009706|Ga0115002_10152622All Organisms → Viruses → Predicted Viral1833Open in IMG/M
3300009785|Ga0115001_10067799All Organisms → Viruses → Predicted Viral2344Open in IMG/M
3300010297|Ga0129345_1009489Not Available3798Open in IMG/M
3300010318|Ga0136656_1300198Not Available522Open in IMG/M
3300010883|Ga0133547_11319842All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1368Open in IMG/M
3300012919|Ga0160422_10022269All Organisms → Viruses → Predicted Viral3676Open in IMG/M
3300017729|Ga0181396_1069849Not Available705Open in IMG/M
3300017744|Ga0181397_1009537Not Available3014Open in IMG/M
3300017746|Ga0181389_1001703All Organisms → cellular organisms → Bacteria8502Open in IMG/M
3300017767|Ga0181406_1247310Not Available524Open in IMG/M
3300017824|Ga0181552_10063223All Organisms → cellular organisms → Bacteria2134Open in IMG/M
3300017824|Ga0181552_10408257Not Available650Open in IMG/M
3300017951|Ga0181577_10215506Not Available1277Open in IMG/M
3300017956|Ga0181580_10210620Not Available1359Open in IMG/M
3300017985|Ga0181576_10782340Not Available565Open in IMG/M
3300018036|Ga0181600_10565853Not Available533Open in IMG/M
3300018036|Ga0181600_10599914Not Available514Open in IMG/M
3300018416|Ga0181553_10155401Not Available1357Open in IMG/M
3300018423|Ga0181593_11040277Not Available560Open in IMG/M
3300019765|Ga0194024_1148331Not Available550Open in IMG/M
3300020185|Ga0206131_10015457Not Available6660Open in IMG/M
3300020188|Ga0181605_10409482Not Available535Open in IMG/M
3300020191|Ga0181604_10065952All Organisms → Viruses → Predicted Viral2047Open in IMG/M
3300020339|Ga0211605_1048666All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes859Open in IMG/M
3300020346|Ga0211607_1066695Not Available730Open in IMG/M
3300020347|Ga0211504_1015266Not Available2167Open in IMG/M
3300020403|Ga0211532_10058096Not Available1781Open in IMG/M
3300020442|Ga0211559_10199065Not Available946Open in IMG/M
3300021068|Ga0206684_1112524All Organisms → cellular organisms → Bacteria915Open in IMG/M
3300021085|Ga0206677_10002910Not Available14706Open in IMG/M
3300021379|Ga0213864_10119276All Organisms → cellular organisms → Bacteria1318Open in IMG/M
3300021443|Ga0206681_10061309All Organisms → Viruses → Predicted Viral1464Open in IMG/M
3300021957|Ga0222717_10057491Not Available2505Open in IMG/M
3300022198|Ga0196905_1047114Not Available1238Open in IMG/M
3300022907|Ga0255775_1216007Not Available721Open in IMG/M
3300022914|Ga0255767_1006159All Organisms → cellular organisms → Bacteria9472Open in IMG/M
3300022937|Ga0255770_10458486All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45537Open in IMG/M
3300023108|Ga0255784_10112733All Organisms → cellular organisms → Bacteria1529Open in IMG/M
(restricted) 3300023109|Ga0233432_10013825All Organisms → cellular organisms → Bacteria6255Open in IMG/M
(restricted) 3300023109|Ga0233432_10315374All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes716Open in IMG/M
3300023110|Ga0255743_10373277All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45712Open in IMG/M
3300023116|Ga0255751_10280840Not Available880Open in IMG/M
3300023180|Ga0255768_10269928Not Available974Open in IMG/M
3300024301|Ga0233451_10350520Not Available549Open in IMG/M
3300024346|Ga0244775_10004364All Organisms → cellular organisms → Bacteria14702Open in IMG/M
3300024346|Ga0244775_10402180Not Available1126Open in IMG/M
3300025084|Ga0208298_1036733Not Available1001Open in IMG/M
3300025653|Ga0208428_1002606All Organisms → cellular organisms → Bacteria7243Open in IMG/M
3300025674|Ga0208162_1002480Not Available9043Open in IMG/M
3300025674|Ga0208162_1004130All Organisms → cellular organisms → Bacteria6850Open in IMG/M
3300025771|Ga0208427_1007694All Organisms → cellular organisms → Bacteria4307Open in IMG/M
3300025870|Ga0209666_1137412Not Available1128Open in IMG/M
3300026083|Ga0208878_1000664All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes11827Open in IMG/M
3300026187|Ga0209929_1014647All Organisms → cellular organisms → Bacteria2507Open in IMG/M
3300027571|Ga0208897_1014962All Organisms → Viruses → Predicted Viral2263Open in IMG/M
3300027751|Ga0208304_10006604All Organisms → cellular organisms → Bacteria4987Open in IMG/M
3300027791|Ga0209830_10197716Not Available938Open in IMG/M
3300027801|Ga0209091_10237567All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes891Open in IMG/M
3300027847|Ga0209402_10027650Not Available4297Open in IMG/M
3300028115|Ga0233450_10339749Not Available620Open in IMG/M
3300029448|Ga0183755_1008842All Organisms → cellular organisms → Bacteria4159Open in IMG/M
3300031519|Ga0307488_10741554Not Available550Open in IMG/M
3300031566|Ga0307378_10847470Not Available764Open in IMG/M
3300031578|Ga0307376_10109240Not Available1940Open in IMG/M
3300031601|Ga0307992_1146644Not Available916Open in IMG/M
3300031606|Ga0302119_10040432Not Available1961Open in IMG/M
3300031621|Ga0302114_10026966Not Available3001Open in IMG/M
3300031627|Ga0302118_10548486Not Available503Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine21.30%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh19.44%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous12.04%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine5.56%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine5.56%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater3.70%
Freshwater And MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine3.70%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater3.70%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine2.78%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water2.78%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.85%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.85%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.85%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine1.85%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil1.85%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater0.93%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater0.93%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.93%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater0.93%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine0.93%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.93%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine0.93%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.93%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.93%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine0.93%
SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment0.93%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300000928Marine plume microbial communities from the Columbia River - 25 PSUEnvironmentalOpen in IMG/M
3300000929Marine plume microbial communities from the Columbia River - 15 PSUEnvironmentalOpen in IMG/M
3300000930Marine microbial communities from the coastal margin of the Columbia River, USA - 33 PSU, 16mEnvironmentalOpen in IMG/M
3300001347Pelagic Microbial community sample from North Sea - COGITO 998_met_06EnvironmentalOpen in IMG/M
3300001352Pelagic Microbial community sample from North Sea - COGITO 998_met_07EnvironmentalOpen in IMG/M
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300004448Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300004457Marine viral communities from Newfoundland, Canada MC-1EnvironmentalOpen in IMG/M
3300005934Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_BEnvironmentalOpen in IMG/M
3300005941Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697EnvironmentalOpen in IMG/M
3300005946Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_DCM_ad_71m_LV_AEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006790Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006868Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300006869Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006924Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaGEnvironmentalOpen in IMG/M
3300007236Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNAEnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300007554Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.709EnvironmentalOpen in IMG/M
3300008050Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaGEnvironmentalOpen in IMG/M
3300008470Sediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563EnvironmentalOpen in IMG/M
3300009000Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MGEnvironmentalOpen in IMG/M
3300009001Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MGEnvironmentalOpen in IMG/M
3300009130Combined Assembly of Gp0139511, Gp0139512EnvironmentalOpen in IMG/M
3300009172Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154EnvironmentalOpen in IMG/M
3300009409Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150EnvironmentalOpen in IMG/M
3300009420Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152EnvironmentalOpen in IMG/M
3300009705Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128EnvironmentalOpen in IMG/M
3300009706Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86EnvironmentalOpen in IMG/M
3300009785Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130EnvironmentalOpen in IMG/M
3300010297Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNAEnvironmentalOpen in IMG/M
3300010318Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_DNAEnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300012919Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaGEnvironmentalOpen in IMG/M
3300017729Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 19 SPOT_SRF_2011-01-11EnvironmentalOpen in IMG/M
3300017744Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23EnvironmentalOpen in IMG/M
3300017746Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29EnvironmentalOpen in IMG/M
3300017767Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20EnvironmentalOpen in IMG/M
3300017824Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017951Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017956Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017985Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018036Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018416Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018423Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018424Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019765Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MGEnvironmentalOpen in IMG/M
3300020185Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1EnvironmentalOpen in IMG/M
3300020188Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041411US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020191Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041410US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020339Marine microbial communities from Tara Oceans - TARA_B100000674 (ERX555929-ERR599080)EnvironmentalOpen in IMG/M
3300020346Marine microbial communities from Tara Oceans - TARA_B100000674 (ERX556057-ERR599069)EnvironmentalOpen in IMG/M
3300020347Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)EnvironmentalOpen in IMG/M
3300020403Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)EnvironmentalOpen in IMG/M
3300020442Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)EnvironmentalOpen in IMG/M
3300021068Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 100m 12015EnvironmentalOpen in IMG/M
3300021085Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015EnvironmentalOpen in IMG/M
3300021379Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247EnvironmentalOpen in IMG/M
3300021443Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 12015EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300022198Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022907Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011511BT metaGEnvironmentalOpen in IMG/M
3300022914Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071402CT metaGEnvironmentalOpen in IMG/M
3300022937Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaGEnvironmentalOpen in IMG/M
3300023108Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaGEnvironmentalOpen in IMG/M
3300023109 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MGEnvironmentalOpen in IMG/M
3300023110Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaGEnvironmentalOpen in IMG/M
3300023116Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaGEnvironmentalOpen in IMG/M
3300023180Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaGEnvironmentalOpen in IMG/M
3300024301Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011504CT (spades assembly)EnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300025084Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025653Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025674Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025771Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025870Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300026083Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_SurfaceA_ad_5m_LV_A (SPAdes)EnvironmentalOpen in IMG/M
3300026187Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG (SPAdes)EnvironmentalOpen in IMG/M
3300027571Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697 (SPAdes)EnvironmentalOpen in IMG/M
3300027751Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713 (SPAdes)EnvironmentalOpen in IMG/M
3300027791Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130 (SPAdes)EnvironmentalOpen in IMG/M
3300027801Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)EnvironmentalOpen in IMG/M
3300027847Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 (SPAdes)EnvironmentalOpen in IMG/M
3300028115Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501CT (spades assembly)EnvironmentalOpen in IMG/M
3300029448Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082EnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031566Soil microbial communities from Risofladan, Vaasa, Finland - UN-1EnvironmentalOpen in IMG/M
3300031578Soil microbial communities from Risofladan, Vaasa, Finland - TR-2EnvironmentalOpen in IMG/M
3300031601Marine microbial communities from Ellis Fjord, Antarctic Ocean - #133EnvironmentalOpen in IMG/M
3300031606Marine microbial communities from Western Arctic Ocean, Canada - AG5_TmaxEnvironmentalOpen in IMG/M
3300031621Marine microbial communities from Western Arctic Ocean, Canada - AG5_SurfaceEnvironmentalOpen in IMG/M
3300031627Marine microbial communities from Western Arctic Ocean, Canada - AG5_33.1EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOWin2010_1009858233300000117MarineMKAREVKARKPILFTKARAFKMNNKILDRKLKHKKNYVLHS*
OpTDRAFT_1025024123300000928Freshwater And MarineMKARXXXXXXXXXFTKARPFKMKNKTLDRKLKHKKNYVYS*
OpTDRAFT_1026426553300000928Freshwater And MarineIMKAKKIKIRQSILFTKARPFKMKNKILDRKLKHKTKLNYVS*
NpDRAFT_1011148423300000929Freshwater And MarineMPYYVYMKVREIKIRQKILFTKARPFKMRNKILDRKLKHKTKLA*
BpDRAFT_10050383113300000930Freshwater And MarineVREIKIRQKILFTKARPFKMRNKILDRKQKHKTKLA*
JGI20156J14371_1019498823300001347Pelagic MarineMPYYVYMKVREIKIRQKILFTKARPFKMRNKILDRKLKHKTKLS*
JGI20157J14317_1001829153300001352Pelagic MarineMKARDIKIRKPILFTKARAFKIKNKVLDRKLKHKKNYVLYP*
JGI24006J15134_1017216933300001450MarineMYIMKVKELKIRKPILFTKARPFKMKNKILPRKQKHKEQL*
Ga0055584_10049980333300004097Pelagic MarinePYYVYMKTREIKIRKTILFTKARPFKMRNKILDRKLKHKKQYEY*
Ga0065861_105005913300004448MarineMPYYVYMKVREIKIRKQILFTKARPFKMKNKVLHRKLKHKTKLA*
Ga0066224_123019553300004457MarineMKAREIKIRKQILFTKARPFKMKNKTLDRKLKHKKRYEY*
Ga0066377_1000580393300005934MarineMYMKTREIKIRKPILFTKSRPHKVKTRTIHRKLKHKEQLT*
Ga0070743_10001259103300005941EstuarineMKVREIKIRKTIIFTKSRPHKVKTKTLHRKQKHKKILFKY*
Ga0070743_1002329253300005941EstuarineKLAYYVYMKAREINIRKPILFTKARPHKIKAKVIHRKLKHKEQLV*
Ga0070743_1002600313300005941EstuarineYVYMKAREVKVRKPILFTKARAFRMNNKVLDRKLKHKKNYVLYT*
Ga0066378_1008631433300005946MarineMYMKAREIKIRKPILFTKARPFKLKNKILDRKQKHKIRYEY*
Ga0098048_120172523300006752MarineMPYYVYMKAREIKIRKTILFTKARPFKMRNKILDRKLKHKTKLA*
Ga0098074_101568553300006790MarineMEGMNNREVKIRKPILFTKSRPHKVKTKVIHRKLKHKEQL*
Ga0098055_139214713300006793MarineMPYYVYMKAREIKIRKPILFTKARPFKMRNKILDRKLKHKTKLA*
Ga0070754_1002881863300006810AqueousMTVREIKIRKTILFTKSRPHKVKTKILDRKKKHKLKLSIDNQS*
Ga0075481_1000262953300006868AqueousMKAKEIKIRKQILFTKARPFKMKNKILDRKQKHKTKLTYVS*
Ga0075477_1039252813300006869AqueousKVREIKIRKTILFTKSRPHKVKTKILDRKKKHKLKLSIDNQS*
Ga0070750_1009172033300006916AqueousMKAREVKVRKPFLFTKSRPHKTRVKTIHRKLKHKE
Ga0070750_1041815413300006916AqueousMKAREIKIRKQILFTKARPFKMKNKILDRKLKHKKRYEY*
Ga0098051_1001671143300006924MarineMKTREIKIRKTMIFTKARPHKLKNKILDRKQKHRKNITNEY*
Ga0075463_1020242433300007236AqueousMKTREIKIRKTILFTKARPFKMRNKILDRKLKHKKQYEY*
Ga0099849_100109053300007539AqueousMKTREIKIRKTILFTKARPHKLKNKILDRKEKHRKNITNEY*
Ga0099849_100535083300007539AqueousMYTMKAREIKIRKTILFTKSRPHKVKTKTIHRKLKHKEQLS*
Ga0102820_103424813300007554EstuarineKLAYYVYMKAREIKIRKQILFTKARPFKMKNKVLHRKLKHKTKLA*
Ga0098052_124353033300008050MarineVRKLKIRKPILFTKARPFKMRNKILPRKQKHKEQV*
Ga0115371_1120188123300008470SedimentMKAKELKIRKPILFTKARPFKMRNKTLARKLKHKEQL*
Ga0102960_101724313300009000Pond WaterMYTMKAREIKIRKKILFTKSRPHKVKNKTIHRKLKHKEQLS*
Ga0102963_102968923300009001Pond WaterMYTMKAREIKIRKKILFTKSRPHKVKTKTIHRKLKHKEQLS*
Ga0118729_124265213300009130MarineMKTKGIKIRKPILFTKARPFKMKNKTLDRKLKHRKSYEY*
Ga0114995_1007066713300009172MarineVIIYIMKATEIKIRKTMIFSKARPFKMKNKILDRKLKHKTKLS*
Ga0114993_1049973533300009409MarineRELKIRKTILFTKARPFKMRNKILPRKQKHKEQA*
Ga0114994_1036674433300009420MarineMKAKEIKIRKTILFTKARPFKMRNKTLARKLKHKEQL*
Ga0115000_1087275813300009705MarineMKIRELKIRKPILFTKARPFKMRNKTLARKLKHKEQL*
Ga0115002_1015262213300009706MarineIMKIRELKIRKPILFTKARPFKMRNKILPRKLKHKEQL*
Ga0115001_1006779933300009785MarineMKATEIKIRKTMIFSKARPFKMKNKILDRKLKHKTKLS*
Ga0129345_100948993300010297Freshwater To Marine Saline GradientMPYYAYMKTREIKIRKTILFTKARPFKMRNKILDRKLKHKKQYEY*
Ga0136656_130019813300010318Freshwater To Marine Saline GradientREVKVRKPILFTKARPHKVRVKTIHRKLKHKEALV*
Ga0133547_1131984213300010883MarineMKVREIKIRQKILFTKARPFKMRNKILDRKLKHKTKL
Ga0160422_10022269113300012919SeawaterMKARELKIRKPILFTKARPFKMKNKILDRKRKHKIRYEY*
Ga0181396_106984933300017729SeawaterYVYMKAREIKIRKQILFTKARPFKMKNKILDRKQKHKKQYEY
Ga0181397_100953743300017744SeawaterMKAREIKIRKQILFTKARPFKMKNKILDRKQKHKKQYEY
Ga0181389_100170383300017746SeawaterMPYYVHMKAREIKIRKTILFTKARPFKMKNKVLDRKLKHKKQYEY
Ga0181406_124731023300017767SeawaterMKVREIKIRKTMIFTKSRPHKVKKNTLHRKQKHKENLN
Ga0181552_1006322313300017824Salt MarshKAREIKIRKTILFTKARPHKVKAKVIHRKLKHKEQLV
Ga0181552_1040825723300017824Salt MarshMKAREVKVRKPILFTKARPHKVRVKTIHRKLKHKEALV
Ga0181577_1021550633300017951Salt MarshMKAREIKIRKTILFTKARPHKVKAKVIHRKLKHKEQLV
Ga0181580_1021062033300017956Salt MarshKTREIKIRKTILFTKARPHKLKNKILDRKLKHRKNITNEY
Ga0181576_1078234033300017985Salt MarshVYMKAREIKIRKTILFTKARPHKVKAKVIHRKLKHKEQLV
Ga0181600_1056585313300018036Salt MarshYVYMKAREVKVRKPILFTKARPHKVRVKTIHRKLKHKEALV
Ga0181600_1059991413300018036Salt MarshREVKVRKPILFTKARPHKVRVKTIHRKLKHKEVLV
Ga0181553_1015540113300018416Salt MarshAREIKIRKTILFTKARPHKVKAKVIHRKLKHKEQLV
Ga0181593_1104027713300018423Salt MarshYHISMKAVKIRKSILFTKSRPHKIKSKIIHRKMKYKEILNK
Ga0181591_1010780113300018424Salt MarshMKIKFRKPILVFSKSRPHKVKTKVLHRKMKHKQTLL
Ga0194024_114833123300019765FreshwaterMIKIRKKILFTKSRPHKLKTKVIHRKLKHKEVLTHA
Ga0206131_1001545773300020185SeawaterMPYYVYMKVREIKIRQKILFTKARPFKMRNKILDRKLKHKTKLS
Ga0181605_1040948233300020188Salt MarshMIKIRKTILFTKSRPHKVKTKVIHRKLKHKESLKNVH
Ga0181604_1006595213300020191Salt MarshREVKVRKPILFTKARPHKVRVKTIHRKLKHKEALV
Ga0211605_104866633300020339MarineMYMMRGKKIKVRKPILFTKARPFKMKNKILDRKLKHKIRYEY
Ga0211607_106669533300020346MarineKKIKVRKPILFTKARPFKMKNKILDRKLKHKIRYEY
Ga0211504_101526653300020347MarineMAYYVYMKAREIKIRKTILFTKARPFKMKNKILDRKLKHRKQYEY
Ga0211532_1005809643300020403MarineMPYYVYMKAREIKIRKTILFTKARPFKMKNKILDRKLKHKKSYKIEFNY
Ga0211559_1019906533300020442MarineMKAREIKIRKTILFTKARPFKMKNKILDRKLKHKKQYEY
Ga0206684_111252413300021068SeawaterMKVRKLKIRKPILFTKARPFKMRNKILPRKQKHKEQ
Ga0206677_1000291063300021085SeawaterMPYYVYMKAREIKIRKQILFTKARPFKIKNKILDRKQKHKKQYEY
Ga0213864_1011927613300021379SeawaterMKAIKVRKPILFTKSRPHKIKSKIIHRKMKYKENLNK
Ga0206681_1006130933300021443SeawaterMKAKEIKIRKPILFTKARPFKMRNKILPRKQKHKEQV
Ga0206681_1008491733300021443SeawaterMQPKIRLKVLFTKSRPFKRKNKVLHRKAKHKKSEIGG
Ga0222717_1005749113300021957Estuarine WaterIAYYTYMKAREIKIRKAIVFTKSRPHKVKSKTLHRKQKYKEALNVYS
Ga0196905_104711433300022198AqueousMKAREVKVRKPILFTKARPHKVRVKTIHRKLKHKE
Ga0255775_121600713300022907Salt MarshYVYMKAREIKIRKPILFTKARPHKVKAKVIHRKLKHKEQLV
Ga0255767_100615913300022914Salt MarshREIKIRKTILFTKARPHKLKNKILDRKLKHRKNITNEY
Ga0255770_1045848613300022937Salt MarshMKAREIKIRKTILFTKARPHKVKAKVIHRKLKHKEQLVXK
Ga0255784_1011273343300023108Salt MarshMKAIKVRKPILFTKSRPHKIKSKIIHRKMKYKENLN
(restricted) Ga0233432_10013825123300023109SeawaterMPYYVYMKVREIKIRQKILFTKARPFKMRNKILDRKQKHKTKLA
(restricted) Ga0233432_1031537423300023109SeawaterVLFKKLAYYVYMKAREINIRKPILFTKARPHKVKAKVIHRKLK
Ga0255743_1037327723300023110Salt MarshMKAREIKIRKTILFTKARPHKVKAKVIHRKLKHKEQ
Ga0255751_1028084033300023116Salt MarshKAREVKVRKPILFTKSRPHKIRIKTIHRKLKHKEALV
Ga0255768_1026992823300023180Salt MarshMKAREVKVRKPILFTKARPHKVRVKTIHRKLKHKEA
Ga0233451_1035052013300024301Salt MarshMKAREVKVGKPILFTKARPHKVRVKTIHRKLKHKEALV
Ga0244775_10004364193300024346EstuarineMKVREIKIRKTIIFTKSRPHKVKTKTLHRKQKHKKILFKY
Ga0244775_1040218013300024346EstuarineYVYMKAREINIRKPILFTKARPHKVKAKVIHRKLKHKEQLV
Ga0208298_103673333300025084MarineMKTREIKIRKTMIFTKARPHKLKNKILDRKQKHRKNITNEY
Ga0208428_1002606173300025653AqueousMKAKEIKIRKQILFTKARPFKMKNKILDRKQKHKTKLTYVS
Ga0208162_1002480133300025674AqueousMKTREIKIRKTILFTKARPHKLKNKILDRKEKHRKNITNEY
Ga0208162_1004130103300025674AqueousMRYYVYMKTREIKIRKAILFTKARPFKMRNKILDRKLKHKKQYEY
Ga0208427_100769413300025771AqueousMKAREVKVRKPFLFTKSRPHKTRIKTIHRKLKHKEVLV
Ga0209666_113741233300025870MarineMKAREIKIRKTILFTKARPFKMKNKVLDRKLKHKKQYEY
Ga0208878_100066413300026083MarineMYMKAREIKIRKPILFTKARPFKLKNKILDRKQKHKIRYEY
Ga0209929_101464723300026187Pond WaterMYTMKAREIKIRKKILFTKSRPHKVKNKTIHRKLKHKEQLS
Ga0208897_101496213300027571EstuarineYVYMKAREVKVRKPILFTKARAFRMNNKVLDRKLKHKKNYVLYT
Ga0208304_1000660413300027751EstuarineYMKVREIKIRKTIIFTKSRPHKVKTKTLHRKQKHKKILFKY
Ga0209830_1019771613300027791MarineMKATEIKIRKTMIFSKARPFKMKNKILDRKLKHKTKLS
Ga0209091_1023756723300027801MarineMKAKEIKIRKTILFTKARPFKMRNKTLARKLKHKEQL
Ga0209402_1002765063300027847MarineMKIRELKIRKPILFTKARPFKMRNKTLARKLKHKEQL
Ga0233450_1033974933300028115Salt MarshSLFLCDIVYMKAREIKIRKPILFTKSRPHQDKSKIIHRKLKHKEKLS
Ga0183755_1008842133300029448MarineMKVREIKIRKTIIFTKSRPHKLNNKTLDRKKKHKSKLTIDNQY
Ga0307488_1074155433300031519Sackhole BrineREIKIRQKILFTKARPFKMRNKILDRKLKHKTKLS
Ga0307378_1084747033300031566SoilIYIMKAKKFKMRKPILFTKARPFKMRNKILPRNQKHKEQV
Ga0307376_1010924083300031578SoilMKAKKFKMRKPILFTKARPFKMRNKILPRNQKHKE
Ga0307992_114664423300031601MarineMKAKELKIRKPILFTKARPFKMRNKTLARKLKHKEQL
Ga0302119_1004043243300031606MarineMRNKKIKIRKTMIFTKARPHGMKNKTLGRKLKHRKDISDEN
Ga0302114_1002696653300031621MarineMPYYVYMKAREIKIRQKILFTKARPFKMMNKILDRKLKHKTKLA
Ga0302118_1054848623300031627MarineIMKLRKLKIRKPILFTKARPFKMRNKILPRNQKHKEQL


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