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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F090991 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 108 |
| Average Sequence Length | 52 residues |
| Representative Sequence | MRIRRNIIAPLILTIGAVGSLVAVPAVSALTAVTPATTAVASGTMSPDAIGYMA |
| Number of Associated Samples | 70 |
| Number of Associated Scaffolds | 107 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 96.39 % |
| % of genes near scaffold ends (potentially truncated) | 4.63 % |
| % of genes from short scaffolds (< 2000 bps) | 70.37 % |
| Associated GOLD sequencing projects | 66 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.41 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (75.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.630 % of family members) |
| Environment Ontology (ENVO) | Unclassified (37.037 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (59.259 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 51.22% β-sheet: 0.00% Coil/Unstructured: 48.78% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.41 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 107 Family Scaffolds |
|---|---|---|
| PF13191 | AAA_16 | 18.69 |
| PF13560 | HTH_31 | 15.89 |
| PF04149 | DUF397 | 1.87 |
| PF07746 | LigA | 0.93 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 75.00 % |
| All Organisms | root | All Organisms | 25.00 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300001452|JGI20203J14952_1015104 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 849 | Open in IMG/M |
| 3300001471|JGI12712J15308_10151326 | Not Available | 600 | Open in IMG/M |
| 3300001593|JGI12635J15846_10112235 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1937 | Open in IMG/M |
| 3300004091|Ga0062387_101595931 | Not Available | 526 | Open in IMG/M |
| 3300004092|Ga0062389_101789079 | Not Available | 794 | Open in IMG/M |
| 3300004092|Ga0062389_101901559 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 773 | Open in IMG/M |
| 3300004121|Ga0058882_1789241 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces purpureus | 701 | Open in IMG/M |
| 3300004121|Ga0058882_1824043 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 012931 | 631 | Open in IMG/M |
| 3300005537|Ga0070730_10037180 | All Organisms → cellular organisms → Bacteria | 3615 | Open in IMG/M |
| 3300009665|Ga0116135_1421573 | Not Available | 544 | Open in IMG/M |
| 3300010866|Ga0126344_1055850 | Not Available | 518 | Open in IMG/M |
| 3300010869|Ga0126359_1346007 | Not Available | 515 | Open in IMG/M |
| 3300011120|Ga0150983_10678929 | Not Available | 553 | Open in IMG/M |
| 3300011120|Ga0150983_10761956 | Not Available | 653 | Open in IMG/M |
| 3300011120|Ga0150983_12133476 | Not Available | 559 | Open in IMG/M |
| 3300011120|Ga0150983_12597513 | Not Available | 521 | Open in IMG/M |
| 3300011120|Ga0150983_13311148 | Not Available | 558 | Open in IMG/M |
| 3300011120|Ga0150983_14765307 | Not Available | 644 | Open in IMG/M |
| 3300011120|Ga0150983_16614397 | Not Available | 526 | Open in IMG/M |
| 3300011271|Ga0137393_11072117 | Not Available | 685 | Open in IMG/M |
| 3300014501|Ga0182024_11257595 | Not Available | 861 | Open in IMG/M |
| 3300017946|Ga0187879_10411222 | Not Available | 750 | Open in IMG/M |
| 3300018047|Ga0187859_10141008 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1275 | Open in IMG/M |
| 3300019240|Ga0181510_1264260 | Not Available | 517 | Open in IMG/M |
| 3300019268|Ga0181514_1217602 | Not Available | 595 | Open in IMG/M |
| 3300020582|Ga0210395_10776975 | Not Available | 715 | Open in IMG/M |
| 3300021180|Ga0210396_10197589 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1797 | Open in IMG/M |
| 3300021181|Ga0210388_10004285 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales | 11186 | Open in IMG/M |
| 3300021181|Ga0210388_11308890 | Not Available | 611 | Open in IMG/M |
| 3300021402|Ga0210385_10243125 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1320 | Open in IMG/M |
| 3300021402|Ga0210385_10272048 | Not Available | 1250 | Open in IMG/M |
| 3300021405|Ga0210387_10232339 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1609 | Open in IMG/M |
| 3300021405|Ga0210387_10930678 | Not Available | 764 | Open in IMG/M |
| 3300021406|Ga0210386_10269943 | Not Available | 1454 | Open in IMG/M |
| 3300021406|Ga0210386_10269943 | Not Available | 1454 | Open in IMG/M |
| 3300021433|Ga0210391_10684051 | Not Available | 804 | Open in IMG/M |
| 3300022530|Ga0242658_1133349 | Not Available | 626 | Open in IMG/M |
| 3300022711|Ga0242674_1071994 | Not Available | 508 | Open in IMG/M |
| 3300022714|Ga0242671_1075543 | Not Available | 604 | Open in IMG/M |
| 3300022716|Ga0242673_1093747 | Not Available | 571 | Open in IMG/M |
| 3300025627|Ga0208220_1039050 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1436 | Open in IMG/M |
| 3300027590|Ga0209116_1020512 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1365 | Open in IMG/M |
| 3300027857|Ga0209166_10100202 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1617 | Open in IMG/M |
| 3300027908|Ga0209006_10032147 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis | 4758 | Open in IMG/M |
| 3300027908|Ga0209006_10501806 | Not Available | 1012 | Open in IMG/M |
| 3300027908|Ga0209006_11099272 | Not Available | 627 | Open in IMG/M |
| 3300029943|Ga0311340_10884686 | Not Available | 744 | Open in IMG/M |
| 3300029951|Ga0311371_10224409 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 2750 | Open in IMG/M |
| 3300030007|Ga0311338_11086287 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 769 | Open in IMG/M |
| 3300030520|Ga0311372_11607191 | Not Available | 791 | Open in IMG/M |
| 3300030528|Ga0210277_10681868 | Not Available | 772 | Open in IMG/M |
| 3300030528|Ga0210277_10927763 | Not Available | 583 | Open in IMG/M |
| 3300030531|Ga0210274_1033068 | Not Available | 561 | Open in IMG/M |
| 3300030532|Ga0210290_1125983 | Not Available | 526 | Open in IMG/M |
| 3300030545|Ga0210271_10099160 | Not Available | 611 | Open in IMG/M |
| 3300030594|Ga0210280_1122712 | Not Available | 592 | Open in IMG/M |
| 3300030603|Ga0210253_10602017 | Not Available | 555 | Open in IMG/M |
| 3300030617|Ga0311356_10794671 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 899 | Open in IMG/M |
| 3300030618|Ga0311354_11210587 | Not Available | 683 | Open in IMG/M |
| 3300030626|Ga0210291_11488340 | Not Available | 696 | Open in IMG/M |
| 3300030627|Ga0210269_10162521 | Not Available | 695 | Open in IMG/M |
| 3300031122|Ga0170822_13239530 | Not Available | 640 | Open in IMG/M |
| 3300031231|Ga0170824_113299615 | Not Available | 558 | Open in IMG/M |
| 3300031234|Ga0302325_12078719 | Not Available | 697 | Open in IMG/M |
| 3300031234|Ga0302325_12540568 | Not Available | 610 | Open in IMG/M |
| 3300031236|Ga0302324_100564651 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1642 | Open in IMG/M |
| 3300031236|Ga0302324_101516520 | Not Available | 870 | Open in IMG/M |
| 3300031446|Ga0170820_15693835 | Not Available | 606 | Open in IMG/M |
| 3300031446|Ga0170820_17682188 | Not Available | 554 | Open in IMG/M |
| 3300031525|Ga0302326_10724663 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1449 | Open in IMG/M |
| 3300031525|Ga0302326_13583738 | Not Available | 514 | Open in IMG/M |
| 3300031708|Ga0310686_107929288 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 2167 | Open in IMG/M |
| 3300031708|Ga0310686_108683080 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 17869 | Open in IMG/M |
| 3300031708|Ga0310686_110661179 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1983 | Open in IMG/M |
| 3300031708|Ga0310686_110872967 | Not Available | 1369 | Open in IMG/M |
| 3300031708|Ga0310686_114864932 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1008 | Open in IMG/M |
| 3300032515|Ga0348332_13019794 | Not Available | 683 | Open in IMG/M |
| 3300032756|Ga0315742_12437501 | Not Available | 595 | Open in IMG/M |
| 3300032895|Ga0335074_10109539 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 3613 | Open in IMG/M |
| 3300032895|Ga0335074_10273377 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1961 | Open in IMG/M |
| 3300032895|Ga0335074_10737627 | Not Available | 937 | Open in IMG/M |
| 3300033134|Ga0335073_10314473 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1873 | Open in IMG/M |
| 3300033134|Ga0335073_11052679 | Not Available | 835 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 29.63% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 19.44% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 12.96% |
| Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 6.48% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 4.63% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 4.63% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 4.63% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 2.78% |
| Boreal Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil | 2.78% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland | 1.85% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 1.85% |
| Arctic Peat Soil | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil | 1.85% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 1.85% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 0.93% |
| Permafrost | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost | 0.93% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 0.93% |
| Plant Litter | Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter | 0.93% |
| Plant Litter | Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter | 0.93% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300001452 | Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 deep-092012 | Environmental | Open in IMG/M |
| 3300001471 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 | Environmental | Open in IMG/M |
| 3300001593 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 | Environmental | Open in IMG/M |
| 3300003505 | Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924) | Environmental | Open in IMG/M |
| 3300004091 | Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300004092 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300004121 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF109 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300005537 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 | Environmental | Open in IMG/M |
| 3300009665 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10 | Environmental | Open in IMG/M |
| 3300010866 | Boreal forest soil eukaryotic communities from Alaska, USA - C1-3 Metatranscriptome (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300010869 | Boreal forest soil eukaryotic communities from Alaska, USA - W4-4 Metatranscriptome (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300010880 | Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300011120 | Combined assembly of Microbial Forest Soil metaT | Environmental | Open in IMG/M |
| 3300011271 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG | Environmental | Open in IMG/M |
| 3300014501 | Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300017946 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10 | Environmental | Open in IMG/M |
| 3300017948 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10 | Environmental | Open in IMG/M |
| 3300018047 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10 | Environmental | Open in IMG/M |
| 3300019240 | Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300019268 | Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300020582 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O | Environmental | Open in IMG/M |
| 3300021180 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O | Environmental | Open in IMG/M |
| 3300021181 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O | Environmental | Open in IMG/M |
| 3300021401 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O | Environmental | Open in IMG/M |
| 3300021402 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O | Environmental | Open in IMG/M |
| 3300021405 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O | Environmental | Open in IMG/M |
| 3300021406 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O | Environmental | Open in IMG/M |
| 3300021433 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O | Environmental | Open in IMG/M |
| 3300021475 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O | Environmental | Open in IMG/M |
| 3300021477 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O | Environmental | Open in IMG/M |
| 3300022530 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300022711 | Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300022714 | Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300022716 | Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300024176 | Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU1 | Environmental | Open in IMG/M |
| 3300025627 | Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 deep-092012 (SPAdes) | Environmental | Open in IMG/M |
| 3300027110 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001 (SPAdes) | Environmental | Open in IMG/M |
| 3300027590 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027619 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027857 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027889 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes) | Environmental | Open in IMG/M |
| 3300027895 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027908 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes) | Environmental | Open in IMG/M |
| 3300029943 | I_Palsa_N3 coassembly | Environmental | Open in IMG/M |
| 3300029951 | III_Palsa_N1 coassembly | Environmental | Open in IMG/M |
| 3300030007 | I_Palsa_E1 coassembly | Environmental | Open in IMG/M |
| 3300030520 | III_Palsa_N2 coassembly | Environmental | Open in IMG/M |
| 3300030528 | Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO135-VCO084SO (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030531 | Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO143-VCO038SO (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030532 | Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO410-VDE108SO (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030545 | Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO142-VCO033SO (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030594 | Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO141-VCO089SO (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030603 | Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO133-ANR017SO (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030617 | II_Palsa_N2 coassembly | Environmental | Open in IMG/M |
| 3300030618 | II_Palsa_E3 coassembly | Environmental | Open in IMG/M |
| 3300030626 | Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO410-VDE110SO (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030627 | Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO153-ARE095SO (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030738 | Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assembly | Environmental | Open in IMG/M |
| 3300031122 | Oak Spring Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031231 | Coassembly Site 11 (all samples) - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031234 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2 | Environmental | Open in IMG/M |
| 3300031236 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1 | Environmental | Open in IMG/M |
| 3300031446 | Fir Summer Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031525 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3 | Environmental | Open in IMG/M |
| 3300031708 | FICUS49499 Metagenome Czech Republic combined assembly | Environmental | Open in IMG/M |
| 3300031823 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05 | Environmental | Open in IMG/M |
| 3300032515 | FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data) | Environmental | Open in IMG/M |
| 3300032756 | Forest Soil Metatranscriptomics Site 2 Humus Litter Mineral Combined Assembly | Environmental | Open in IMG/M |
| 3300032895 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3 | Environmental | Open in IMG/M |
| 3300033134 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGI20203J14952_10151041 | 3300001452 | Arctic Peat Soil | MRIRRNIIAPLILAIGTVGSLVAVPAVTALTAVTPSTTAVAASPGYVYYG* |
| JGI12712J15308_101513261 | 3300001471 | Forest Soil | MRIRRNVIAPLILTIGTVGSLVAVPAVTALTAVTPATTAVAAASPGYVYYG* |
| JGI12635J15846_101122352 | 3300001593 | Forest Soil | MRIRRNIIAPLILTIGAVGSLVAVPAVTALTAVPAATSAAATPNVIGYYG* |
| JGIcombinedJ51221_101581552 | 3300003505 | Forest Soil | MRIRRTIIAPVILTIGAIGSLVAAPAVAAMTSVAPTATSVASSSNAFVYHT* |
| Ga0062387_1015959312 | 3300004091 | Bog Forest Soil | MRIRRNIIAPLILTIGAVGSFVAVPVMTVMATASPAAAAVAYGTSSPDVIIMHA* |
| Ga0062389_1017890791 | 3300004092 | Bog Forest Soil | MRIRRDIIAPLILTIGAVGSLVAVPAVSALTAVTSATTVVASGGMSPDAIVMHG* |
| Ga0062389_1019015592 | 3300004092 | Bog Forest Soil | MRIRRNVIAPLILTIGTVGSLVAVPALSALATVAPAVTAAATSHMSP |
| Ga0058882_17892411 | 3300004121 | Forest Soil | MRIRRNVIAPLILTIGAVGSLVAVPAVTALTAVTPAAATVASGTDTSNAIVHMG* |
| Ga0058882_18240431 | 3300004121 | Forest Soil | MRIRRNVIAPLILTIGAVGSLVAVPAVTALTAVTPAATVAASGTATPGVIGHMA* |
| Ga0070730_100371803 | 3300005537 | Surface Soil | MRIRRNIIAPLILTIGTVGSLAAVPAVSALTAVAPAATTAAPSPSYVYYG* |
| Ga0116135_13117671 | 3300009665 | Peatland | MRIRRTIIAPVILTIGAVGSLVTVPAVAALSSVAPAATSVASGTMSPNAYTYHA* |
| Ga0116135_14215731 | 3300009665 | Peatland | MRIRRNVIAPLVLTIGAVGSLVAVPAVTALTAVASSTSAVVTASASPDIV |
| Ga0126344_10558501 | 3300010866 | Boreal Forest Soil | MRIRRNVIAPLILTIGAVGSLVAVPAVAALTAVAPATTVVASGHPTPDAIGFMG* |
| Ga0126359_13460071 | 3300010869 | Boreal Forest Soil | MRIRRNIIAPLILTIGAVGSLVAVPTVAALTAVAPAATAVASTNLTPDAIGHMG* |
| Ga0126350_104741481 | 3300010880 | Boreal Forest Soil | MRIRRTIIAPVILTIGAIGSLVAAPAVTALTSTAPAASVASTGNAYYYHA* |
| Ga0150983_106789291 | 3300011120 | Forest Soil | MRIRRNIIAPLILTIGAVGSLVAVPAVSALTAVTPATTAVASGTMSPDAIGYMA* |
| Ga0150983_107619561 | 3300011120 | Forest Soil | MRIRRNVIAPLILTIGAVGSLVAVPAVTALSAVTPATTAVASGTTASPDFVYLS* |
| Ga0150983_121334761 | 3300011120 | Forest Soil | MRIRRNIIAPLVLTIGTVGSLVAIPAISALATAAPAASVAAIGNPQPDVIGYMG* |
| Ga0150983_125975131 | 3300011120 | Forest Soil | MRIRRNVIAPLVLTIGAVGSLVAVPAVTALTAVASSTSAVATGTASPDIVVYHG* |
| Ga0150983_133111481 | 3300011120 | Forest Soil | MRIRRNIIAPLILTIGAVGSLVAVPAATALTAVTPATTAVAASPSYVYYG* |
| Ga0150983_147653071 | 3300011120 | Forest Soil | MRIRRNVIAPLILTIGAVGSLVAVPAVTALTAVTPAATVAASGTATPGVIGHMS* |
| Ga0150983_161588441 | 3300011120 | Forest Soil | MRIRRTIIAPVILTIGAVGSLVAVPAVAALSSVAPTATSVASSTISPNAYTYHA* |
| Ga0150983_166143971 | 3300011120 | Forest Soil | MRIRRNVIAPLVLTIGAVGSLVAVPAVTALTAVSSSTSAVATGTASPDAIVYHG* |
| Ga0137393_110721171 | 3300011271 | Vadose Zone Soil | VRIRRNIIAPLILTIGAVGSLVAVPAVSALTAVTTATTAVATGSASPYVIVMHG* |
| Ga0182024_112575951 | 3300014501 | Permafrost | MRIRRNIIAPLILTIGAVGSLAAVPAVTALTAVTPAASVVAMSSNAYGYQT* |
| Ga0187879_104112221 | 3300017946 | Peatland | MRIRRNVIAPLVLTIGAVGSLVAVPAVTALTAVASSPSAVATGTASPDVIVYHG |
| Ga0187847_103092732 | 3300017948 | Peatland | MRIRRTIIAPVILTIGAVGSLVTVPAVAALSSVAPAATSVASGTMSPNAYTYHA |
| Ga0187859_101410082 | 3300018047 | Peatland | MRIRRNVIAPLVLTIGAVGSLVAVPAVTALTAVAPATTAVAADSITPDAIGFHG |
| Ga0181510_12642601 | 3300019240 | Peatland | VRIRRNIIAPLILTIGAVGSLVAVPAVSALTAVTPATAAVASGTISPNAIGFMG |
| Ga0181514_12176021 | 3300019268 | Peatland | MRIRRNIIAPLILTIGAVGSLVAVPAVTALSAVTPATAAVASSTTISPDYGYMG |
| Ga0210395_107769751 | 3300020582 | Soil | MRIRRNIIAPLVLTIGTVGSLVAIPAISALATAAPAASVAAIGNPQPDVIGYMG |
| Ga0210396_101975892 | 3300021180 | Soil | MRIRRNIIAPLILTIGAVGSLVAVPAVTALTAVTPAATSAAASPGIIVYYG |
| Ga0210388_100042857 | 3300021181 | Soil | MRIRRNIIAPLILTIGAVGSLVAVPALSALTAVTPAATAVATGTASPDVIGLHG |
| Ga0210388_104725411 | 3300021181 | Soil | MRIRRTIIAPLILTIGAIGSLVAAPAVAAMTSAPAVTSVASTGNAFYYHT |
| Ga0210388_113088901 | 3300021181 | Soil | MRIRRNIIAPLILTIGAVGSLVAIPAVSALSAVTPATTVVAAQPDGFIYMG |
| Ga0210393_103958421 | 3300021401 | Soil | MRIRRTVIAPLILTIGAVGSLVAAPAVAALTSVAPTATSVAYGSNVYYYHA |
| Ga0210385_102431251 | 3300021402 | Soil | MRIRRNIIAPLILTIGAVGSLAAVPAVAALTAVSPATTAVASGTTPSPDFVYMA |
| Ga0210385_102720481 | 3300021402 | Soil | MRIRRNVIAPLVLTIGAVGSLVAVPAVTALTAVASSTSAVATGSASPDIVIYHG |
| Ga0210385_111671581 | 3300021402 | Soil | MRIRRTIIAPVILTIGAVGSLVAVPAAAALTSTAPAVTSVASGTMSPNAYTYH |
| Ga0210387_102323392 | 3300021405 | Soil | MRIRRNIIAPLILTIGAVGSLAAIPAVTALTAVTPASVSVAASPDAIYYFG |
| Ga0210387_107452962 | 3300021405 | Soil | MRIRRTIIAPLILTIGAIGSLVAAPAVAAMTSVAPAVTSVASGSNAYVYHT |
| Ga0210387_109306781 | 3300021405 | Soil | VRIRRNVIAPLVLTIGAVGSLVAVPAVTALTAVAPSVSAVAAGHMSPDAIYYQG |
| Ga0210386_102699431 | 3300021406 | Soil | MRIRRNIIAPLILTIGAVGSLVAVPAATALTAVTPATTAVAASPSYVYYG |
| Ga0210386_102699432 | 3300021406 | Soil | MRIRRTIIAPVILTIGAIGSLVAVPAVAALTSVAPSATSVASNSITPDAYTYHG |
| Ga0210391_106840512 | 3300021433 | Soil | MRIRRTIIAPVILTIGAIGSLVAAPAVAAMTSVAPTATSVASSSNAF |
| Ga0210391_113849131 | 3300021433 | Soil | RTIIAPLIPTIGAIGSLVAAPAVAAMTSAPAVTSVASTGNAFYYHT |
| Ga0210392_107730971 | 3300021475 | Soil | MRIRRTIIAPLVLTIGAIGSLVAAPAVAAMTSVAPAVTSVADHGNAYVYHT |
| Ga0210398_108410971 | 3300021477 | Soil | GCWPRLTHGGIMRIRRTVIAPLILTIGAVGSLVAAPAVAALTSVAPTATSVAYGSNVYYYHA |
| Ga0242658_11333491 | 3300022530 | Soil | VRIRRNVIAPLVLTIGAVGSLAAVPAVTALTAVAPSVSAVAAGHMSPDAIYYQG |
| Ga0242674_10719942 | 3300022711 | Soil | MRIRRNIIAPLILTIGAVGSLVAIPAVSALSVVTPATTAVAAQPAGFIYMG |
| Ga0242671_10755431 | 3300022714 | Soil | MRIRRNVIAPLILTIGAVGSLVAVPAVTALSAVTPATTAVASGTTASPDFVYLS |
| Ga0242673_10937471 | 3300022716 | Soil | MSIRRNVIAPLILTIGAVGSLVAVPAVTALSAVTPATTAVASGTTASPDFVYLS |
| Ga0224565_10125582 | 3300024176 | Plant Litter | MRIRRTIIAPVILTIGAIGSLVAAPAVAAMTSVAPAATSVADSGNAYIYHA |
| Ga0208220_10390501 | 3300025627 | Arctic Peat Soil | MRIRRNIIAPLILAIGTVGSLVAVPAVTALTAVTPSTTAVAASPGYVYYG |
| Ga0208488_10257111 | 3300027110 | Forest Soil | MRIRRTIIAPLILTIGAIGSLVAAPAVAAMTSVAPTATSVASSSNAFVYHT |
| Ga0209116_10205122 | 3300027590 | Forest Soil | MRIRRNIIAPLILTIGAVGSLVAVPAVTALTAVPAATSAAATPNVIGYYG |
| Ga0209330_10085293 | 3300027619 | Forest Soil | MRIRRTIAPVILTIAAVGSLVATPAVAALTSSAPATSVASTGSVYYYHA |
| Ga0209166_101002021 | 3300027857 | Surface Soil | MRIRRNIIAPLILTIGTVGSLAAVPAVSALTAVAPAATTAAPSPSYVYYG |
| Ga0209380_106424961 | 3300027889 | Soil | MRIRRTLIAPVILTLGAVGSLVAVPAVAALSSVAPAATSVASSTISPDAYTYHG |
| Ga0209624_105396441 | 3300027895 | Forest Soil | MRIRRTIIAPVILTISAIGSLVAAPAVAALTSVAPTATSVAYGSNVYYYHA |
| Ga0209006_100321471 | 3300027908 | Forest Soil | MRIRRNVIAPLILTIGTVGSLVAVPAVTALTAVTPATTAVAAASPGYVYYG |
| Ga0209006_104223122 | 3300027908 | Forest Soil | MRIRRTIIAPVILTIGAIGSLVAVPAVAALTSVAPSATSVASNTIAPDAYTYHG |
| Ga0209006_105018061 | 3300027908 | Forest Soil | MRIRRNIIAPLIVTIGAVGSLVAVPAVSALTAVAPVTTAVASGSISPSAIGVHA |
| Ga0209006_110992722 | 3300027908 | Forest Soil | MRIRRNIIAPFILTIGAVGSLVAVPAVSALTAVTPASTAVATSAIQPDAFGYMG |
| Ga0311340_108846861 | 3300029943 | Palsa | MRIRRNIIAPLILTIGAVGSLVAVPAISALTAVTPAATAVATGSVTPDVIGLHG |
| Ga0311371_102244093 | 3300029951 | Palsa | MRIRRNVIAPLVLTIGAIGSLVAVPAVTAMTAVSPAVAAVASGTTTPSVIVHMG |
| Ga0311338_109419572 | 3300030007 | Palsa | MRIRRTIIAPVILTIGAVGSLVAVPAVAALSSVAPAATSVASGTMSPDAYTYHA |
| Ga0311338_110862871 | 3300030007 | Palsa | MRIRRNIIGPLILTVGAVGSLVAVPAVSALTAVTPATAAVVAGSAKPDVIVYYG |
| Ga0311372_116071911 | 3300030520 | Palsa | MRIRRNIIAPLILTIGAVGSLVAVPAVTALTAVTPATTTVASVTISPDAYGYMG |
| Ga0210277_106818681 | 3300030528 | Soil | MRIRRNIIAPLILTIGAVGSLVAVPAVTALSAVTPATTAVASGTTMSPDAYGYMG |
| Ga0210277_109277631 | 3300030528 | Soil | THGGIMRIRRNIIAPLILTIGAVGSLVAVPAVTALTAVTPAASVVASGTASPDIIGHMG |
| Ga0210274_10330681 | 3300030531 | Soil | MRIRRNVIAPLILMIGAVGSLVAVPAVTALTAVTPATTAVATGTASPDAYGHMG |
| Ga0210290_11259831 | 3300030532 | Soil | MRIRRNIIAPLILTIGAVGSLVAVPAVTALTAVTPAASVVASGTASPDIIGHMG |
| Ga0210271_100991601 | 3300030545 | Soil | MRIRRNIIAPLILTIGAVGSLAAVPAVTALSAVTPATTAVASGTTSPSVIVHMG |
| Ga0210280_11227121 | 3300030594 | Soil | MRIRRNIIAPVILTIGAIGSLVTVPALAALTATAPATAVVASGTPAPDAIGFMG |
| Ga0210253_106020171 | 3300030603 | Soil | MRIRRTVIAPLVLTIGAIGSLVAVPAVTAMTAVSPAAAAVASGTTTPSIIVHMG |
| Ga0311356_107946712 | 3300030617 | Palsa | MRIRRNVIAPLVLTIGAVGSLVAVPAVTALTAVTPAATTVAASPAYYYYG |
| Ga0311354_112105872 | 3300030618 | Palsa | MRIRRNVIAPLVLTIGAVGSLVAVPAVTALTAVASSTSAVVTGSASPDVIIYHG |
| Ga0210291_114883401 | 3300030626 | Soil | MRIRRNVIAPLILTIGTVGSLVAVPALSALATVAPAATTVASPHMAPDAIVYML |
| Ga0210269_101625211 | 3300030627 | Soil | MRIRRNVIAPLILTIGAVGSLVTVPAVTALTAVTPATTAVASSPAVIGYHS |
| Ga0265462_103848902 | 3300030738 | Soil | MRIRRTIIAPVILTIGTVGSLAAVPAVAALSSVAPTVTSVASGTMSPNAYTYHA |
| Ga0170822_132395301 | 3300031122 | Forest Soil | MRIRRNVIAPLVLTIGAVGSLVAIPAVTALAAVTPATTAVAVGHPAPDIIVYMG |
| Ga0170824_1132996151 | 3300031231 | Forest Soil | MRIRRNVIAPLILTIGAVGSVVAVPAVAALTAVAPATAVVASGHPVPDAIGFMG |
| Ga0170824_1149081042 | 3300031231 | Forest Soil | MRIRRTIIAPVILTIGAVGSLVAVPAMAALTSVAPAATSVASNSISPNAYTYHG |
| Ga0302325_115076022 | 3300031234 | Palsa | MRIRRTIIAPVILTVGTIGSLVAVPAVAALASAAPTVTSVASGGIAPNAYYYHT |
| Ga0302325_120787191 | 3300031234 | Palsa | MRIRRNVIAPLILTIGAVGSLVAVPAVTALTAVTPAATAVATGNPTPGVIGYMA |
| Ga0302325_125405682 | 3300031234 | Palsa | MRIRRNVIAPLILTIGAVGSLVAIPAMSALTSVAPAATSVASGTISPNGIVYML |
| Ga0302324_1005646513 | 3300031236 | Palsa | MRIRRNVIAPLILTIGAVGSLVAVPAVTALAAVTPATTAVASSSSSPDIIVYMG |
| Ga0302324_1015165201 | 3300031236 | Palsa | MRIRRNVIAPLVLTIGAVGSLVAVPAVTALTAVASSTSAVVTGSASPDIVIYHG |
| Ga0170820_156938351 | 3300031446 | Forest Soil | MRIRRNVIAPLVLTISAVGSLVAVPALTALTAAVPASAVVASGTPTPDIIVHMG |
| Ga0170820_168201362 | 3300031446 | Forest Soil | MRIRRTIIAPVILTIGAVGSLVAVPAVAALTSVAPAATSVASITIAPNAYTYHG |
| Ga0170820_176821881 | 3300031446 | Forest Soil | MRIRRNVIAPLVLTIGTVGSLVAVPALTALSAVAPASVAVASGASTPNAIVHMG |
| Ga0302326_107246631 | 3300031525 | Palsa | MRIRRNIIAPLILTIGAVGSLVAVPAVSALTAVTPATTAVATGSILPDAIGVHG |
| Ga0302326_135837381 | 3300031525 | Palsa | MRIRRNIIAPLVLTIGAIGSLVAVPAVTALTAVTPAVATVADGSSGVIIYHT |
| Ga0310686_1079292882 | 3300031708 | Soil | MRIRRNIIAPLIVTIGAVGSLVAVPAVSALTAVTPAATAVTASSTPSTVIGYHG |
| Ga0310686_1086830803 | 3300031708 | Soil | VRIRRNIIAPLILTIGTVGSLVAVPVASALSTVAPATTAVVAATITSDASIQHG |
| Ga0310686_1106611792 | 3300031708 | Soil | MRIRRNIIAPLILTLGAVGSLAAIPAVSALSAVTTATASVAPGTATPSVIGYMG |
| Ga0310686_1108729672 | 3300031708 | Soil | MRIRRTIIAPVILTLGAVGSLAAVPAVAALSSVAPTATSVASSTISPNAYTYHA |
| Ga0310686_1148649322 | 3300031708 | Soil | MRIRRNVIAPLVLTIGAVGSLVAVPAVTALTAVASSTSAVATGSASPDIIVYHG |
| Ga0307478_104886642 | 3300031823 | Hardwood Forest Soil | MRIRRTIIAPVILTIGALGSLVAAPAVAALTSSAPATSVASTGNAYYYHA |
| Ga0307478_109098201 | 3300031823 | Hardwood Forest Soil | MRIRRTVIAPLILTIGAVGSLVAAPAVAALTSVAPAATSVAYGSNVYYY |
| Ga0348332_130197941 | 3300032515 | Plant Litter | MRIRRNVIAPLILTIGAIGSLVAVPAVTVLTAVTPATATVVAGTMSPDAYGHMA |
| Ga0315742_124375011 | 3300032756 | Forest Soil | MRIRRNVIAPLVLTIGAIGSLVAVPAVTAMTAVSPAAAAVASGTTTPSIIVHMG |
| Ga0335074_101095392 | 3300032895 | Soil | MRIRRNIIAPLILTIGAVGSLAAVPAVTALTAVTPATSAVAMGSNAYGYQT |
| Ga0335074_102733771 | 3300032895 | Soil | MRIRRNILAPLILTVGAVGSLVAVPVMTAVTPAATTVAASPGAIIVHA |
| Ga0335074_107376271 | 3300032895 | Soil | MRIRRNIIAPLILTIGAVGSLVAVPAMTALTAVPAATSAAPTSNVIGFYG |
| Ga0335073_103144732 | 3300033134 | Soil | MRIRRNILAPLILTVGAVGSLVAVPVMTAVTPAVTTVAASPGAIIVHA |
| Ga0335073_110526791 | 3300033134 | Soil | MRIRRNIIAPLILTIGTVGSLVAVPVVSALTPATAAATSLAAAPNAIGYHA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |