Metagenome / Metatranscriptome Family F090978

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090978
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	50 residues
Representative Sequence	MAAPKNTPMTGEIWHLTIDDLLAPLPEATRLGGPGPFVINLSASTAPI
Number of Associated Samples	89
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	89.81 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	87.96 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.24

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (60.185 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (18.518 % of family members)
Environment Ontology (ENVO)	Unclassified (22.222 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.037 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 6.58% β-sheet: 0.00% Coil/Unstructured: 93.42%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.24
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.24
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF07969	Amidohydro_3	18.52
PF05231	MASE1	12.96
PF03358	FMN_red	6.48
PF00892	EamA	4.63
PF01738	DLH	2.78
PF00924	MS_channel	2.78
PF16691	DUF5062	1.85
PF13188	PAS_8	1.85
PF04366	Ysc84	0.93
PF03330	DPBB_1	0.93
PF07690	MFS_1	0.93
PF14026	DUF4242	0.93
PF07730	HisKA_3	0.93
PF07883	Cupin_2	0.93
PF13417	GST_N_3	0.93
PF01613	Flavin_Reduct	0.93
PF02321	OEP	0.93
PF01007	IRK	0.93
PF00378	ECH_1	0.93
PF00440	TetR_N	0.93
PF00571	CBS	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	13.89
COG0642	Signal transduction histidine kinase	Signal transduction mechanisms [T]	12.96
COG3447	Integral membrane sensor domain MASE1	Signal transduction mechanisms [T]	12.96
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	2.78
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	2.78
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.85
COG1853	FMN reductase RutF, DIM6/NTAB family	Energy production and conversion [C]	0.93
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	0.93
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.93
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.93
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	60.19 %
Unclassified	root	N/A	39.81 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	60.19 %
Unclassified	root	N/A	39.81 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	60.19 %
Unclassified	root	N/A	39.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	34.26 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	4.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	19.44 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4.63 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3.70 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.81 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	4.63 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	4.63 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	4.63 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.78 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	1.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.81 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	4.63 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4.63 %
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	3.70 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.78 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.85 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.81 %
unclassified Steroidobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae	4.63 %
Lachnospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	3.70 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	3.70 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.78 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.85 %
Eubacteriales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis	0.93 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.81 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	4.63 %
unclassified Lachnospiraceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae	3.70 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	3.70 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.78 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.85 %
Eubacteriales Family XIII. Incertae Sedis	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Eubacteriales Family XIII. Incertae Sedis	0.93 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.81 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	4.63 %
Lachnospiraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium	3.70 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	3.70 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.78 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.85 %
Eubacteriales Family XIII. Incertae Sedis	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Eubacteriales Family XIII. Incertae Sedis	0.93 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001471\|JGI12712J15308_10158649	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium	586	Open in IMG/M
3300001661\|JGI12053J15887_10257934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	864	Open in IMG/M
3300001661\|JGI12053J15887_10447817	Not Available	618	Open in IMG/M
3300002245\|JGIcombinedJ26739_100806532	Not Available	819	Open in IMG/M
3300002917\|JGI25616J43925_10054862	All Organisms → cellular organisms → Bacteria	1715	Open in IMG/M
3300004080\|Ga0062385_10544267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	724	Open in IMG/M
3300004082\|Ga0062384_100146336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	1333	Open in IMG/M
3300004082\|Ga0062384_101479729	Not Available	502	Open in IMG/M
3300004091\|Ga0062387_100402479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	923	Open in IMG/M
3300004152\|Ga0062386_100478894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1009	Open in IMG/M
3300004635\|Ga0062388_101990175	Not Available	600	Open in IMG/M
3300005534\|Ga0070735_10411670	Not Available	809	Open in IMG/M
3300005712\|Ga0070764_10465891	Not Available	755	Open in IMG/M
3300005938\|Ga0066795_10240665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	536	Open in IMG/M
3300005994\|Ga0066789_10011942	All Organisms → cellular organisms → Bacteria → Proteobacteria	3842	Open in IMG/M
3300005994\|Ga0066789_10230462	Not Available	778	Open in IMG/M
3300005995\|Ga0066790_10058203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	1668	Open in IMG/M
3300006050\|Ga0075028_100899981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium	545	Open in IMG/M
3300006052\|Ga0075029_101171554	Not Available	536	Open in IMG/M
3300009520\|Ga0116214_1455559	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300009624\|Ga0116105_1043087	Not Available	1016	Open in IMG/M
3300009633\|Ga0116129_1025458	All Organisms → cellular organisms → Bacteria	2017	Open in IMG/M
3300010341\|Ga0074045_10052595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2942	Open in IMG/M
3300010379\|Ga0136449_100020615	All Organisms → cellular organisms → Bacteria → Proteobacteria	16857	Open in IMG/M
3300012361\|Ga0137360_11388592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	605	Open in IMG/M
3300012362\|Ga0137361_10449710	All Organisms → cellular organisms → Bacteria → Proteobacteria	1183	Open in IMG/M
3300012683\|Ga0137398_10511058	All Organisms → cellular organisms → Bacteria → Proteobacteria	826	Open in IMG/M
3300012685\|Ga0137397_10629763	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300012923\|Ga0137359_10907752	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300012924\|Ga0137413_11415056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	562	Open in IMG/M
3300012927\|Ga0137416_12205815	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300012929\|Ga0137404_12133731	Not Available	523	Open in IMG/M
3300013832\|Ga0120132_1107239	Not Available	591	Open in IMG/M
3300014156\|Ga0181518_10583730	Not Available	522	Open in IMG/M
3300014969\|Ga0157376_12339766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium	574	Open in IMG/M
3300019886\|Ga0193727_1058093	All Organisms → cellular organisms → Bacteria → Proteobacteria	1228	Open in IMG/M
3300020034\|Ga0193753_10349806	Not Available	614	Open in IMG/M
3300020580\|Ga0210403_10770616	Not Available	766	Open in IMG/M
3300020581\|Ga0210399_10492876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1019	Open in IMG/M
3300020581\|Ga0210399_10609718	Not Available	903	Open in IMG/M
3300021086\|Ga0179596_10506859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	612	Open in IMG/M
3300021168\|Ga0210406_10442623	All Organisms → cellular organisms → Bacteria	1035	Open in IMG/M
3300021168\|Ga0210406_10651839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	816	Open in IMG/M
3300021170\|Ga0210400_10588154	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300021170\|Ga0210400_11585091	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300021171\|Ga0210405_10222738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1494	Open in IMG/M
3300021180\|Ga0210396_10330305	All Organisms → cellular organisms → Bacteria	1347	Open in IMG/M
3300021180\|Ga0210396_10967395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	723	Open in IMG/M
3300021403\|Ga0210397_10359547	Not Available	1081	Open in IMG/M
3300021406\|Ga0210386_10252002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1506	Open in IMG/M
3300021474\|Ga0210390_10424990	All Organisms → cellular organisms → Bacteria	1122	Open in IMG/M
3300021475\|Ga0210392_10227989	Not Available	1312	Open in IMG/M
3300021475\|Ga0210392_11376514	Not Available	528	Open in IMG/M
3300021477\|Ga0210398_11504413	Not Available	524	Open in IMG/M
3300021478\|Ga0210402_10378234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1314	Open in IMG/M
3300021478\|Ga0210402_10881660	Not Available	821	Open in IMG/M
3300021479\|Ga0210410_10691235	Not Available	901	Open in IMG/M
3300024182\|Ga0247669_1095938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium	502	Open in IMG/M
3300025891\|Ga0209585_10444168	Not Available	534	Open in IMG/M
3300025913\|Ga0207695_10163558	All Organisms → cellular organisms → Bacteria → Proteobacteria	2155	Open in IMG/M
3300026291\|Ga0209890_10221999	Not Available	598	Open in IMG/M
3300026555\|Ga0179593_1005612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	2146	Open in IMG/M
3300026555\|Ga0179593_1045757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	2431	Open in IMG/M
3300027171\|Ga0207947_1014278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	566	Open in IMG/M
3300027439\|Ga0209332_1012256	All Organisms → cellular organisms → Bacteria	1698	Open in IMG/M
3300027629\|Ga0209422_1053047	All Organisms → cellular organisms → Bacteria	972	Open in IMG/M
3300027860\|Ga0209611_10677347	Not Available	561	Open in IMG/M
3300027862\|Ga0209701_10261242	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300027895\|Ga0209624_10065601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	2337	Open in IMG/M
3300027895\|Ga0209624_10484205	Not Available	824	Open in IMG/M
3300027905\|Ga0209415_10420768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1067	Open in IMG/M
3300027908\|Ga0209006_10639703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	875	Open in IMG/M
3300027908\|Ga0209006_11293120	Not Available	564	Open in IMG/M
3300027986\|Ga0209168_10150924	All Organisms → cellular organisms → Bacteria	1178	Open in IMG/M
3300028047\|Ga0209526_10082463	All Organisms → cellular organisms → Bacteria → Proteobacteria	2265	Open in IMG/M
3300028536\|Ga0137415_10333269	All Organisms → cellular organisms → Bacteria → Proteobacteria	1321	Open in IMG/M
3300028780\|Ga0302225_10360477	Not Available	685	Open in IMG/M
3300028808\|Ga0302228_10239155	Not Available	821	Open in IMG/M
3300028808\|Ga0302228_10521959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	523	Open in IMG/M
3300028813\|Ga0302157_10610222	Not Available	562	Open in IMG/M
3300028871\|Ga0302230_10296875	Not Available	626	Open in IMG/M
3300028906\|Ga0308309_10076065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2521	Open in IMG/M
3300029911\|Ga0311361_11411182	Not Available	534	Open in IMG/M
3300029913\|Ga0311362_10708837	All Organisms → cellular organisms → Bacteria	859	Open in IMG/M
3300029943\|Ga0311340_11515105	Not Available	524	Open in IMG/M
3300029951\|Ga0311371_10230387	All Organisms → cellular organisms → Bacteria	2703	Open in IMG/M
3300030043\|Ga0302306_10179106	Not Available	817	Open in IMG/M
3300030053\|Ga0302177_10193702	Not Available	1124	Open in IMG/M
3300030057\|Ga0302176_10254775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	703	Open in IMG/M
3300030399\|Ga0311353_10165914	All Organisms → cellular organisms → Bacteria	2097	Open in IMG/M
3300030399\|Ga0311353_11175024	Not Available	634	Open in IMG/M
3300030646\|Ga0302316_10358588	Not Available	587	Open in IMG/M
3300030739\|Ga0302311_10895401	Not Available	569	Open in IMG/M
3300030760\|Ga0265762_1073530	Not Available	721	Open in IMG/M
3300031028\|Ga0302180_10124301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1454	Open in IMG/M
3300031261\|Ga0302140_10775431	Not Available	688	Open in IMG/M
3300031525\|Ga0302326_11465801	All Organisms → cellular organisms → Bacteria	917	Open in IMG/M
3300031525\|Ga0302326_13233093	Not Available	549	Open in IMG/M
3300031708\|Ga0310686_106743966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	651	Open in IMG/M
3300031708\|Ga0310686_107315197	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300031708\|Ga0310686_108171066	Not Available	1378	Open in IMG/M
3300031708\|Ga0310686_113351004	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300031708\|Ga0310686_117662580	Not Available	523	Open in IMG/M
3300031726\|Ga0302321_101862077	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300031823\|Ga0307478_11353792	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300031902\|Ga0302322_102182712	Not Available	681	Open in IMG/M
3300032180\|Ga0307471_103770869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Eubacteriales Family XIII. Incertae Sedis	536	Open in IMG/M
3300033134\|Ga0335073_10053101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5406	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.22%
Host-Associated	Host-Associated	2.78%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.04%
Aquatic	Environmental → Aquatic	10.19%
Plants	Host-Associated → Plants	2.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.67%
Peat	Environmental → Terrestrial → Peat	20.37%
Freshwater	Environmental → Aquatic → Freshwater	8.33%
Sediment	Environmental → Aquatic → Sediment	1.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.85%
Peat Moss	Host-Associated → Plants → Peat Moss	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.22%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	20.37%
Loam	Environmental → Terrestrial → Soil → Loam	12.96%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.33%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.07%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.37%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	20.37%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.96%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.48%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.63%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.85%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.85%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.52%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	14.81%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.04%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	11.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.41%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.56%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	4.63%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	3.70%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.78%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.85%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.85%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.93%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.93%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.93%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005938	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009633	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013832	Permafrost microbial communities from Nunavut, Canada - A3_5cm_0M	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300024182	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10	Environmental	Open in IMG/M
3300025891	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027171	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF039 (SPAdes)	Environmental	Open in IMG/M
3300027439	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027629	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027860	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)	Host-Associated	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300028813	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3	Environmental	Open in IMG/M
3300028871	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_1	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029913	III_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030043	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030057	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030646	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_2	Environmental	Open in IMG/M
3300030739	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_3	Environmental	Open in IMG/M
3300030760	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031261	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12712J15308_101586492	3300001471	Forest Soil	MAAPINTPLTGDIWHLCIDDLLAPLPEKARLGGSGPFVINLSASTAPIGLPAVKNIAGCQ
JGI12053J15887_102579342	3300001661	Forest Soil	MATNLRAPVTEDIWHLSIDDLLSPLPEKPRLGGAGPYVINLSSSTASIGLPTLNLAGC
JGI12053J15887_104478172	3300001661	Forest Soil	MATPINAPMAGEIWHLSIEDLFQPVQEAPRLGGDGPFVINLSVSTAPINVPTKAFTNSPL
JGIcombinedJ26739_1008065322	3300002245	Forest Soil	MAEPIDSALSGDIWHLGIDDLFAPLPETIRLGGPGPFVINLTTSS
JGI25616J43925_100548623	3300002917	Grasslands Soil	MAAPTNTPMTGEIWHLTIDDLLAPLPEVTRLGGPGPFVINL
Ga0062385_105442671	3300004080	Bog Forest Soil	MAAPINTPLSGDIWHLSIDDLLAPLPETSRLGGAGPFVINLSVSTAPISVPTKPIA
Ga0062384_1001463363	3300004082	Bog Forest Soil	MATRVNTPLAGEIWHLSIEDLFAPVQEPQRLGGDGPFVINLSVSTAPINLPKKPFDCCRD
Ga0062384_1014797291	3300004082	Bog Forest Soil	MATQINAPVAGEIWHLSIEDLFQPVQEASRLGGDGPFVINLSVST
Ga0062387_1004024791	3300004091	Bog Forest Soil	MARPISTPLAGEIWHLSIEDLFAPVQETQRLGGDGPFVINLSVSTAPISVPKKSFP
Ga0062386_1004788943	3300004152	Bog Forest Soil	MAKPINTPIAGEIWHLSIEDLFAPVHEKQRLGGDGPFVINLSVSTAPINLPPK
Ga0062388_1019901752	3300004635	Bog Forest Soil	MATPINAPMAGEIWHLSIEDLFQPVQEAPRLGGDGPFVINLSVSTAPISVPAKPFAGCAE
Ga0070735_104116702	3300005534	Surface Soil	MATPINAPMAGEIWHLSIEDLFQPVQEAPRLGGDGPFVINLSVSTAPINLPAKAFSSRID
Ga0070764_104658911	3300005712	Soil	MATPINAPMAGEIWHLSIEDLFQPVQEAPRLGGEGPFVINLSVS
Ga0066795_102406651	3300005938	Soil	MARPLSWDIWHLSIDDLLAPLPESPRLGGPGPFVINLSASTAPISQPIKGVIGCPDA
Ga0066789_100119426	3300005994	Soil	MATPINAPMAAEIWHLSIEDLFQPVEEAPRLGGDGPFVI
Ga0066789_102304622	3300005994	Soil	MAAPINTPMTGDIWHLSIDDLLEPLPEKTRLGGPGPFVINLSASTAPIGLPAKGFADT
Ga0066790_100582032	3300005995	Soil	MATPINAPMAGEIWHLSIEDLFQPVQDAARLGGDGPFVINLSVSTAPISVPTKAFTNSRL
Ga0075028_1008999811	3300006050	Watersheds	MAGPKNTPTRDIWHLSIEDLFAPLPEKTRLGGPGPFVIN
Ga0075029_1011715542	3300006052	Watersheds	MAASIKSPMTGEIWHLTIDDLFAPLPEAVRLGGPGPFVINLSTSTAPIAVPVKG
Ga0116214_14555591	3300009520	Peatlands Soil	MAAPIKSPMTGEIWHLTIDDLFAPLPEAVRLGGPGPFVINLSTSTAPI
Ga0116105_10430871	3300009624	Peatland	MAQPINSRLTGDIWHLSIDDLLAPMAQTARLGGPGPF
Ga0116129_10254581	3300009633	Peatland	MAETTNTPSSEDIQDLNIEDLFAPLPEKTRLGGPGPF
Ga0074045_100525957	3300010341	Bog Forest Soil	MATPMNSPLTGEIWHLSIDDLLEPVSQTPRLGGPGPFVINL
Ga0136449_10002061516	3300010379	Peatlands Soil	MARPLSGDIWHLSIDDLLAPLPESPRLGGPGPFVIN
Ga0137360_113885922	3300012361	Vadose Zone Soil	MTNTPLTGEIWHLSIDDLLAPLPETARLGGPGPFVINLSASSAPIGLPVKVIDGCRNAHV
Ga0137361_104497103	3300012362	Vadose Zone Soil	MAAPKNTSMTGEIWHLTIDDLLAPLPEATRLGGPGPFVINLSASTAPI
Ga0137398_105110582	3300012683	Vadose Zone Soil	MANTPLTGEIWHLSVDDLLAPLPETTRLGGTGPFVINLTASSAPISLPVKGTAGAQ
Ga0137397_106297632	3300012685	Vadose Zone Soil	MAGEIWHLSIEDLFQQVQEVPRLGGDGPFVINLSASTAPISVPTKP
Ga0137359_109077522	3300012923	Vadose Zone Soil	MAAPKNTPMTGEIWHLTIDDLLAPLPEATRLGGPGPFVINLSASTAPI
Ga0137413_114150562	3300012924	Vadose Zone Soil	MTNTPLTGEIWHLSIDDLLAPLPESARLGGSGPFVINLS
Ga0137416_122058152	3300012927	Vadose Zone Soil	MAAPINTPLTGDIWHLSVDDLLAPLPDSARLGGPGPFVISL
Ga0137404_121337311	3300012929	Vadose Zone Soil	MAAPINTPLTGDIWHLTVDDLFAPLPETVRLGGPGPFVINLSTSTAPITLPAKGFATFEHTHV
Ga0120132_11072391	3300013832	Permafrost	MATPINAPMAGEIWHLSIEDLFQQVTEAPRLGGDGPFVIN
Ga0181518_105837301	3300014156	Bog	MARPLGGDIWHLSIDDLLAPLPESPRLGGPGPFVIN
Ga0157376_123397662	3300014969	Miscanthus Rhizosphere	MAGPKNTPSRDIWHLSIEDLFAPLPEKTRLGGPGPFVINLSASTAPIDLPVKTFAGYQHA
Ga0193727_10580931	3300019886	Soil	MAGEIWHLSIDDLFQPVQEAPRLGGEGPFVINLSASTAPISIPATAFA
Ga0193753_103498061	3300020034	Soil	MATPINAPMAGEIWHLSIEDLFQPVQEAPRLGGEGPFVINLSVSTAPIT
Ga0210403_107706162	3300020580	Soil	MATPINAPMAGEIWHLSIEDLFQQVQEAPRLGGDGPFVINLSASTAPISVPTKAFTS
Ga0210399_104928762	3300020581	Soil	MAGPIKSPVTGDIWHLSIDDLFAPLPEKTRLGGPGPFVINLSASTAPIDLPSK
Ga0210399_106097181	3300020581	Soil	MLETLQPSAENNMAAPIDTALSGDIWHLGIDDLFAPLPETIRLGGPGPFVINLTTSSAPIALPAKSIAGCE
Ga0179596_105068591	3300021086	Vadose Zone Soil	MTNTPLTGEIWHLSIDDLLAPLPETARLGGPGPFVINL
Ga0210406_104426231	3300021168	Soil	MATPINAPMAGEIWHLSIEDLFQPVQEAPRLGGDGPFVINLS
Ga0210406_106518391	3300021168	Soil	MAAPIDTSLTGEIWHLSIEDLLAPLPHTMRLGGPGPFVINLSTSSSPIASPIKSIAGC
Ga0210400_105881542	3300021170	Soil	MAAPTNTPLTGEIWHLSIDDLLAPLPEVARLGGPGPFVINLSASTAPIALPTKSIVGC
Ga0210400_115850912	3300021170	Soil	MAAPTNTPMTGEIWHLTIDDLLAPLPEVTRLGGPGPF
Ga0210405_102227382	3300021171	Soil	MAAPIDTALSGDIWHLGIDDLFAPLPETIRLGGPGPFVINLTTSSAPIALPAKSIVGCEYAQLYRL
Ga0210396_103303051	3300021180	Soil	MGTPINTPLTSEIWHLTIDDLLEPLPASPRLGGPGPFVINLSASTAPISVPMKAVAEHPG
Ga0210396_109673952	3300021180	Soil	MAGPMKSPATGDIWHLSIDDLFAPLPEKTRLGGPGPFVINLSAST
Ga0210397_103595472	3300021403	Soil	MATPINAPMAGEIWHLSIEDLFQPVQEAPRLGGDGPFVINLSVSTA
Ga0210386_102520021	3300021406	Soil	MAKSINKPIAGEIWHLSIEDLFAPVHETQRLGGDGPFVINLSVSTAPIVL
Ga0210390_104249901	3300021474	Soil	MGTPINTPLTSEIWHLTIDDLLEPLPASPRLGGPGPFVINLSASTAPISLPMKAVA
Ga0210392_102279891	3300021475	Soil	MAPQMNAPVAGEIWHLSIEDLFQPVQEAPRLGGDGPFV
Ga0210392_113765141	3300021475	Soil	MATRVNTPLAGEIWHLSIEDLFAPVQEAQRLGGDGPFVISL
Ga0210398_115044131	3300021477	Soil	MAETTNTPSSEDIQDLNIEDLFAPLPEKTRLGGPG
Ga0210402_103782342	3300021478	Soil	MAAPIDTSLTGEIWHLSIEDLLAPLPHTMRLGGPG
Ga0210402_108816601	3300021478	Soil	MATPINAGEIWHLSIEDLFQPVQEAPRLGGDGPFVINLSVSTAPIDLPTRAFTSSRLEA
Ga0210410_106912351	3300021479	Soil	MATPINAPMAGEIWHLSIEDLFQPVQEAQRLGGDGPFVINLSV
Ga0247669_10959382	3300024182	Soil	MAGPKNTPSRDIWHLSIEDLFAPLPEKTRLGGPGPFVINLSASTAPIDLPVKTFAGYQ
Ga0209585_104441681	3300025891	Arctic Peat Soil	MATPINTPLTGEIRHLSIDDLFAPLPGARRLGGSGPFVINLSASTVPISLPKAG
Ga0207695_101635584	3300025913	Corn Rhizosphere	MATPTDTASNGDILHLSIDDLLAPLPETPRLGGAGPFVINLST
Ga0209890_102219991	3300026291	Soil	MTGDIWHLSIDDLLEPLPEKTRLGGPGPFVINLSASTAPIGLPAKGFADTRN
Ga0179593_10056121	3300026555	Vadose Zone Soil	MAAPTNTPLTGEIWHLSIDDLLAPLPEVTRLGGPGPFVINLSASTAPIALPAKGIAGCEQ
Ga0179593_10457571	3300026555	Vadose Zone Soil	MAAPINAPMAGEIWHLSIEDLFQQVQEAPRLGGDGPFVINLSASTAPISVPTKAFTSSRL
Ga0207947_10142782	3300027171	Forest Soil	MATSVGAPFTSEIWHLTIEDLLAPLPETPRLGGPGPFVINLCASTAPIDPPTKSITERA
Ga0209332_10122563	3300027439	Forest Soil	MTGPIDTSLTGEILHLSIDDLLAPLPARIRLGGAGPFVINLSTS
Ga0209422_10530471	3300027629	Forest Soil	MAAPIDTPLTGEIWHLSIDDLLAPLPETARLGGPGPFVINLSASSAPVSPPVKGIAGCQH
Ga0209611_106773472	3300027860	Host-Associated	MATPMNTPSTGATWELSADDLLAPLPEAAPRLGGAGPFVINLSTSSTEMSTQ
Ga0209701_102612422	3300027862	Vadose Zone Soil	MAAPKNTPMTGEIWHLTIDDLLAPLPEATRLGGSGPFVINLSASTAPITVPAKSIAGCEQAHMYQLQ
Ga0209624_100656012	3300027895	Forest Soil	MATPINAPMAGEIWHLSIEDLFQPVQEAPRLGGEGPFVINLSV
Ga0209624_104842051	3300027895	Forest Soil	MATSLNTPLTGEIWHLSIEDLLQPLEEVPRLGGPGPFVINLSASSAPISQPAKEL
Ga0209415_104207681	3300027905	Peatlands Soil	MAAPMNSPLTGEIWHLSIDDLLEPVSQTPRLGGPGPFVI
Ga0209006_106397031	3300027908	Forest Soil	MAAPIDTALNGDIWHLGIDDLFAPLPETIRLGGPGPFVINLTTSSAPIGL
Ga0209006_112931202	3300027908	Forest Soil	MATPINAPLTSEIWHLSIEDLLEPLTEMPRLGGPGPFVINLSASSAPLGQPASGFAPPEG
Ga0209168_101509242	3300027986	Surface Soil	MATPINAPMAGEIWHLSIEDLFQPVQEAPRLGGDGPFVINLSVSTAPINLPAK
Ga0209526_100824633	3300028047	Forest Soil	MAEPISTPLTGDTLHLSVDDLLAPLPESARLGGPGPFVINLSASS
Ga0137415_103332693	3300028536	Vadose Zone Soil	MAAPIDTPLTGEIWHLSIDDLLAPLAEMARLGGPGPFVISLSASSAPVALPVK
Ga0302225_103604772	3300028780	Palsa	MNTPLTREIWHLSIEDLLEPLPETPRLGGPGPFVINLSASSAPISQPIKDIPGSDCA
Ga0302228_102391551	3300028808	Palsa	MGTPINTPLTSEIWHLTIDDLLEPVAAAPCLGGPGPF
Ga0302228_105219591	3300028808	Palsa	MAAPINTPSAGEIWHLSIDDLFAPVQERHRLGGDGPFVI
Ga0302157_106102222	3300028813	Bog	MATPINAPLTSEIWHLSIEDLLEPMTESPRLGGPGPFVINLSASSAPLSQP
Ga0302230_102968751	3300028871	Palsa	MAAPINTPLTGDIWHLSIDDLLAPLPEAPRLGGPGPFVINLSVSTAPIGLPMKPI
Ga0308309_100760654	3300028906	Soil	MGTPINTPLTSEIWHLTIDDLLEPLPASPRLGGPGPFVINLSASTAPISVPMKAVAEHPGTH
Ga0311361_114111821	3300029911	Bog	MGAPIDSPVTGDILNLSIDDLLAPLPETQRLGGYGPFVINLSASSAPIDVPPKGIGGCEHVHFFQ
Ga0311362_107088373	3300029913	Bog	MATPINAPLTSEIWHLSIEDLLEPICESPRLGGLGPFVINLSASSAPL
Ga0311340_115151051	3300029943	Palsa	MAETTNTPSSEDIWNLNIDDLLAPLPEKARLGGPGPFVINLSASYAPIDLPA
Ga0311371_102303875	3300029951	Palsa	MGTPINTPLTSEIWHLTIDDLLEPVAAAPCLGGPGPFVINLSASTAPISVPMKAVAEHP
Ga0302306_101791062	3300030043	Palsa	MAETTNTPSSEDIWNLNIDDLLAPLPEKARLGGPGPFVIN
Ga0302177_101937021	3300030053	Palsa	MATPINAPMAGEIWHLSIEDLFQPVQEAPRLGGDGPFVINLSVSTAPISV
Ga0302176_102547752	3300030057	Palsa	MPMNTPLTREIWHLSIEDLLEPLPETPRLGGPGPFVI
Ga0311353_101659143	3300030399	Palsa	MPMNTPLTREIWHLSIEDLLEPLPETPRLGGPGPFVINLSASSAP
Ga0311353_111750241	3300030399	Palsa	MGTPINTPLTSEIWHLTIDDLLEPVAAAPCLGGPGPFVIN
Ga0302316_103585881	3300030646	Palsa	MATPINAPMAGEIWHLSIEDLFQPVQEAPRLGGDGPFVINLSVSTAPIS
Ga0302311_108954012	3300030739	Palsa	MSMNTPLTREIWHLSIDDLLEPLPETPRLGGPGPFVINLSASTA
Ga0265762_10735301	3300030760	Soil	MGTPINTPLTSEIWHLTIDDLLEPLPASPRLGGPGPFVINLSASTAPISVPMKAVA
Ga0302180_101243011	3300031028	Palsa	MAAPINTPSAGEIWHLSIDDLFAPVQERHRLGGDGPFVINLSVSTAPITIP
Ga0302140_107754311	3300031261	Bog	MGAPINTPLTGDIWHLSIDDLLAPLPETQRLGGYGPFVINLSASS
Ga0302326_114658011	3300031525	Palsa	MGTPINTPLTSEIWHLTIDDLLEPLPASPRLGGPGPFVINLSASTAPISV
Ga0302326_132330931	3300031525	Palsa	MATLLNGPLTGEIWHLSIEDLLQPLEEAPRLGGPGPFVINLSASSAPIGQPAK
Ga0310686_1067439662	3300031708	Soil	MLETFQPSAENNMAAPIDTALSGDIWHLGIDDLFAPLPDTIRLGGPGPFVINLTTSSAPIALPAKSIAGCEHAQ
Ga0310686_1073151973	3300031708	Soil	MATSLNTPLTGEIWHLSIEDLLQPLEEVPRLGGPGPFVINLSASSAPI
Ga0310686_1081710661	3300031708	Soil	MPTQINAPMAGEIWHLSIEDLFQPVQEAPRLGGDGPFVINLSVSTAPISVPT
Ga0310686_1133510043	3300031708	Soil	MATPINAPLTSEIWHLSIDDLLEPLSEPLRLGGPGPFVINLSASS
Ga0310686_1176625802	3300031708	Soil	MGTPINTPLTSEIWHLTIDDLLEPLAASPRLGGPGPFVINLSASTAPISVPMKAV
Ga0302321_1018620772	3300031726	Fen	MAGPTNTPVTGDIWHLSIDDLFAPLPEKTRLGGPGPFVINLSVSTAPIDPPPKGLDA
Ga0307478_113537921	3300031823	Hardwood Forest Soil	MATPGNPPLTGDISHLSIEDLLATLPEKVRLGGPGPFVIN
Ga0302322_1021827122	3300031902	Fen	MATPTDTPSPGDIWHLSIDDLFALPEAPRLGGEGPFVINLSASSAPITLPKGALAESHSAVV
Ga0307471_1037708692	3300032180	Hardwood Forest Soil	MAAPTNTPMTGEIWHLTIDDLLAPLPEVTRLGGPGPFVINLSASTAPITVPAKSIAGCEQAH
Ga0335073_100531011	3300033134	Soil	MGTPINTPLTSEIWHLTIDDLLAPLPASPRLGGAGPFVINLSASTAPIS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090978

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences