Metagenome / Metatranscriptome Family F090930

Basic Information
Family ID	F090930
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	58 residues
Representative Sequence	VNVVVLVGTDDTAAALGETARALESDDTRAAVFVGDVTTPEGRAALDEFVQELFDPRP
Number of Associated Samples	95
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	69.16 %
% of genes near scaffold ends (potentially truncated)	24.07 %
% of genes from short scaffolds (< 2000 bps)	95.37 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.69

Most Common Taxonomy
Group	Unclassified (66.667 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.741 % of family members)
Environment Ontology (ENVO)	Unclassified (36.111 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (48.148 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 32.56% β-sheet: 17.44% Coil/Unstructured: 50.00%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF12822	ECF_trnsprt	15.74
PF13469	Sulfotransfer_3	8.33
PF01613	Flavin_Reduct	7.41
PF12706	Lactamase_B_2	2.78
PF07681	DoxX	2.78
PF13193	AMP-binding_C	1.85
PF07291	MauE	1.85
PF02683	DsbD	0.93
PF00106	adh_short	0.93
PF01061	ABC2_membrane	0.93
PF01555	N6_N4_Mtase	0.93
PF03773	ArsP_1	0.93
PF03176	MMPL	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG1853	FMN reductase RutF, DIM6/NTAB family	Energy production and conversion [C]	7.41
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	2.78
COG4270	Uncharacterized membrane protein	Function unknown [S]	2.78
COG0701	Uncharacterized membrane protein YraQ, UPF0718 family	Function unknown [S]	0.93
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.93
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	0.93
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.93
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.93
COG2409	Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily	General function prediction only [R]	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
All Organisms	root	All Organisms	33.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
cellular organisms	root	All Organisms → cellular organisms	33.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	33.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	25.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	25.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	20.37 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	10.19 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.85 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.19 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.85 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.19 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.85 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.19 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.85 %
unclassified Frankia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.19 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.85 %
Frankia sp. EUN1f	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. EUN1f	0.93 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459005\|F1BAP7Q01DCPHW	Not Available	529	Open in IMG/M
3300000956\|JGI10216J12902_103373483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1163	Open in IMG/M
3300002568\|C688J35102_118567659	Not Available	572	Open in IMG/M
3300003203\|JGI25406J46586_10162690	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300003320\|rootH2_10227210	All Organisms → cellular organisms → Bacteria	1239	Open in IMG/M
3300003988\|Ga0055475_10146319	Not Available	732	Open in IMG/M
3300003988\|Ga0055475_10211050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	613	Open in IMG/M
3300004055\|Ga0055480_10404929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	551	Open in IMG/M
3300004081\|Ga0063454_100586008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	810	Open in IMG/M
3300005329\|Ga0070683_102230513	Not Available	526	Open in IMG/M
3300005332\|Ga0066388_100522003	All Organisms → cellular organisms → Bacteria	1821	Open in IMG/M
3300005332\|Ga0066388_102813165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	889	Open in IMG/M
3300005334\|Ga0068869_100834839	Not Available	794	Open in IMG/M
3300005338\|Ga0068868_102381465	Not Available	506	Open in IMG/M
3300005347\|Ga0070668_101835812	Not Available	558	Open in IMG/M
3300005355\|Ga0070671_101145273	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300005434\|Ga0070709_10085734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2066	Open in IMG/M
3300005436\|Ga0070713_101883714	Not Available	580	Open in IMG/M
3300005535\|Ga0070684_100396173	All Organisms → cellular organisms → Bacteria	1273	Open in IMG/M
3300005543\|Ga0070672_101142260	Not Available	693	Open in IMG/M
3300005548\|Ga0070665_100432549	Not Available	1325	Open in IMG/M
3300005548\|Ga0070665_101379672	Not Available	714	Open in IMG/M
3300005548\|Ga0070665_101972270	Not Available	589	Open in IMG/M
3300005718\|Ga0068866_11113180	Not Available	566	Open in IMG/M
3300005843\|Ga0068860_100676537	Not Available	1041	Open in IMG/M
3300005985\|Ga0081539_10009236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8298	Open in IMG/M
3300006041\|Ga0075023_100059716	All Organisms → cellular organisms → Bacteria	1220	Open in IMG/M
3300006050\|Ga0075028_100831014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	565	Open in IMG/M
3300006059\|Ga0075017_100048070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2859	Open in IMG/M
3300006163\|Ga0070715_10266437	Not Available	902	Open in IMG/M
3300006175\|Ga0070712_101958120	Not Available	513	Open in IMG/M
3300006354\|Ga0075021_10355639	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300006755\|Ga0079222_10335347	Not Available	1011	Open in IMG/M
3300006794\|Ga0066658_10286853	Not Available	881	Open in IMG/M
3300006854\|Ga0075425_101962272	Not Available	655	Open in IMG/M
3300007769\|Ga0102952_1127582	Not Available	787	Open in IMG/M
3300007769\|Ga0102952_1197063	Not Available	637	Open in IMG/M
3300007775\|Ga0102953_1207183	Not Available	847	Open in IMG/M
3300009012\|Ga0066710_102960318	Not Available	663	Open in IMG/M
3300009094\|Ga0111539_10869515	Not Available	1049	Open in IMG/M
3300009101\|Ga0105247_10580464	Not Available	828	Open in IMG/M
3300009148\|Ga0105243_10589823	Not Available	1068	Open in IMG/M
3300009176\|Ga0105242_12461135	Not Available	568	Open in IMG/M
3300009789\|Ga0126307_10031434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4084	Open in IMG/M
3300009789\|Ga0126307_11502695	Not Available	546	Open in IMG/M
3300009840\|Ga0126313_10448753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1028	Open in IMG/M
3300009870\|Ga0131092_10322114	Not Available	1490	Open in IMG/M
3300010037\|Ga0126304_10524149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	796	Open in IMG/M
3300010041\|Ga0126312_11241445	Not Available	550	Open in IMG/M
3300010045\|Ga0126311_10699414	Not Available	810	Open in IMG/M
3300010166\|Ga0126306_10356600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1137	Open in IMG/M
3300010360\|Ga0126372_11352102	Not Available	743	Open in IMG/M
3300010400\|Ga0134122_13065684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	522	Open in IMG/M
3300010401\|Ga0134121_12444005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	564	Open in IMG/M
3300011119\|Ga0105246_12270462	Not Available	529	Open in IMG/M
3300012204\|Ga0137374_10430191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1041	Open in IMG/M
3300012930\|Ga0137407_10648740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	992	Open in IMG/M
3300012958\|Ga0164299_10476466	Not Available	824	Open in IMG/M
3300012958\|Ga0164299_11625825	Not Available	510	Open in IMG/M
3300012984\|Ga0164309_10287041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1179	Open in IMG/M
3300012985\|Ga0164308_10288382	Not Available	1298	Open in IMG/M
3300012985\|Ga0164308_11024191	Not Available	735	Open in IMG/M
3300012985\|Ga0164308_11821889	Not Available	567	Open in IMG/M
3300012986\|Ga0164304_11005316	Not Available	661	Open in IMG/M
3300012987\|Ga0164307_10709919	Not Available	789	Open in IMG/M
3300012988\|Ga0164306_10956913	Not Available	702	Open in IMG/M
3300012988\|Ga0164306_11003457	Not Available	688	Open in IMG/M
3300013308\|Ga0157375_10473146	Not Available	1418	Open in IMG/M
3300014325\|Ga0163163_10291399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1684	Open in IMG/M
3300014498\|Ga0182019_11146920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. EUN1f	569	Open in IMG/M
3300014968\|Ga0157379_10989876	Not Available	801	Open in IMG/M
3300014969\|Ga0157376_11521633	Not Available	702	Open in IMG/M
3300014969\|Ga0157376_12753690	Not Available	532	Open in IMG/M
3300015374\|Ga0132255_105298907	Not Available	546	Open in IMG/M
3300016341\|Ga0182035_11516807	Not Available	603	Open in IMG/M
3300017959\|Ga0187779_10118721	Not Available	1608	Open in IMG/M
3300017965\|Ga0190266_10364118	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300018469\|Ga0190270_10517394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1142	Open in IMG/M
3300018469\|Ga0190270_13180267	Not Available	520	Open in IMG/M
3300018481\|Ga0190271_11027205	Not Available	949	Open in IMG/M
3300019886\|Ga0193727_1170174	Not Available	571	Open in IMG/M
3300020070\|Ga0206356_10776102	Not Available	517	Open in IMG/M
3300025899\|Ga0207642_10641751	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300025905\|Ga0207685_10504497	Not Available	637	Open in IMG/M
3300025918\|Ga0207662_10927061	Not Available	617	Open in IMG/M
3300025927\|Ga0207687_11032728	Not Available	705	Open in IMG/M
3300025927\|Ga0207687_11364876	Not Available	609	Open in IMG/M
3300025931\|Ga0207644_10937147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	726	Open in IMG/M
3300025934\|Ga0207686_11650076	Not Available	530	Open in IMG/M
3300025937\|Ga0207669_10293750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1232	Open in IMG/M
3300025942\|Ga0207689_10776796	Not Available	808	Open in IMG/M
3300025986\|Ga0207658_11730724	Not Available	571	Open in IMG/M
3300026118\|Ga0207675_100193636	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1951	Open in IMG/M
3300027894\|Ga0209068_10952369	Not Available	509	Open in IMG/M
3300027910\|Ga0209583_10114429	Not Available	1058	Open in IMG/M
3300028379\|Ga0268266_11766970	Not Available	593	Open in IMG/M
3300028556\|Ga0265337_1196257	Not Available	548	Open in IMG/M
3300028654\|Ga0265322_10201118	Not Available	570	Open in IMG/M
3300028809\|Ga0247824_11116278	Not Available	505	Open in IMG/M
3300028814\|Ga0307302_10638729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	529	Open in IMG/M
3300028819\|Ga0307296_10294264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	885	Open in IMG/M
3300031251\|Ga0265327_10073520	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1705	Open in IMG/M
3300031954\|Ga0306926_12086120	Not Available	635	Open in IMG/M
3300032205\|Ga0307472_101755408	Not Available	615	Open in IMG/M
3300032261\|Ga0306920_100590604	Not Available	1644	Open in IMG/M
3300032770\|Ga0335085_11318335	Not Available	761	Open in IMG/M
3300032955\|Ga0335076_10896775	Not Available	768	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	63.89%
Host-Associated	Host-Associated	35.19%
Engineered	Engineered	0.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	55.56%
Plants	Host-Associated → Plants	35.19%
Aquatic	Environmental → Aquatic	8.33%
Wastewater	Engineered → Wastewater	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.56%
Rhizosphere	Host-Associated → Plants → Rhizosphere	24.07%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.26%
Sediment	Environmental → Aquatic → Sediment	5.56%
Marine	Environmental → Aquatic → Marine	2.78%
Roots	Host-Associated → Plants → Roots	0.93%
Rhizome	Host-Associated → Plants → Rhizome	0.93%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.04%
Loam	Environmental → Terrestrial → Soil → Loam	12.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.04%
Soil	Host-Associated → Plants → Rhizosphere → Soil	12.04%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.33%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.56%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.93%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	0.93%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	12.04%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.33%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.33%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.56%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.56%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.70%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.70%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.78%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.93%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.93%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	0.93%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	7.41%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	6.48%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	5.56%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.56%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.56%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.63%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.78%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.78%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.85%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.85%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.93%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.93%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.93%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	0.93%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300003320	Sugarcane root Sample H2	Host-Associated	Open in IMG/M
3300003988	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_CordB_D2	Environmental	Open in IMG/M
3300004055	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWB_D2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007769	Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_D1_MG	Environmental	Open in IMG/M
3300007775	Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_D2_MG	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300009870	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Linkou plant	Engineered	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028556	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG	Host-Associated	Open in IMG/M
3300028654	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG	Host-Associated	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300031251	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG	Host-Associated	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E41_01129060	2170459005	Grass Soil	VNVVVLVGTDDDAAALGETARTLESAATRAAVFVGDVTTPEGRAALQEFVEELFPPPNVPASK
JGI10216J12902_1033734833	3300000956	Soil	VKVVVLVGTDAAGLGDVARELESESDDTRAAVFVGDVTTPDGRAALHEFVEELFDPR*
C688J35102_1185676592	3300002568	Soil	RTDDAAALGDTARALESDDTRAAVFVGDVTTPEGRAALDQFVKELFDPRP*
JGI25406J46586_101626902	3300003203	Tabebuia Heterophylla Rhizosphere	VNVVVLVGREGDAAALGETADALASDDTRAAVFVGDVTTPEGRAALQEFVAELFEP
rootH2_102272102	3300003320	Sugarcane Root And Bulk Soil	VNVVVLVGTEADAAALGETARALETAETRAAVFVGDVTTPEGRAALDEFVRELFDHS*
Ga0055475_101463192	3300003988	Natural And Restored Wetlands	VNVVVLVGNENDAAVLGETARALESNDTRAAVFVGDVATPEGRAALQEFVAELFPPSP*
Ga0055475_102110501	3300003988	Natural And Restored Wetlands	VTAGLPDRVVVLVGTDAVALGEVARGLASSGLRTAVFVGDVTDPDGRAALEEFVAELFPAEHG*
Ga0055480_104049292	3300004055	Natural And Restored Wetlands	VTAGLPDRVVVLVGTDAVALGEVARGWASSGLRTAVFVGDVTDPDGRAALEEFVAELFPAEHG*
Ga0063454_1005860083	3300004081	Soil	VNVVVLVGTEADAEGLGAAAVELESTGTRAAVFVGDVTSAEGRAALQELVAELFTAR*
Ga0070683_1022305132	3300005329	Corn Rhizosphere	VNVVVLVGSDDDAGALGETARALESDTTRAAVFVGDVTTSEGRAALEEFVTELFDPRP*
Ga0066388_1005220033	3300005332	Tropical Forest Soil	VNVVVLVGSDADAKGLGAAARALESGDTRAAVFVGDVTTTDGRAALQELIAELFATADENP*
Ga0066388_1028131651	3300005332	Tropical Forest Soil	VNVVVLVGGDADAAALGETARALESDSTRAAVFVGDVTTPEGRAALEEFVAELFDPGP*
Ga0068869_1008348391	3300005334	Miscanthus Rhizosphere	VNVVVLVGTDGDAAALGEAARALESDDTRAAVFVGDVTTPEGRAALEEFVAELFPPPSQ*
Ga0068868_1023814652	3300005338	Miscanthus Rhizosphere	GRAGGAHVNVVVLVGREDDADALGDTARVLESDRTRAAVFVGDVTTPEGRAALDEFVKELFDHP*
Ga0070668_1018358122	3300005347	Switchgrass Rhizosphere	VNVVVLVGRDDDADALGDTARALESDDTRAAVFVGDVTTPEGRAALQEFVQELFPPS*
Ga0070671_1011452732	3300005355	Switchgrass Rhizosphere	VNVVVLVGRADDAAALGDTARALESDDTRAAVFVGDVTTPEGRAALDEFVQELFDPRP*
Ga0070709_100857344	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VNVVVLVGTDADAEGLGAAALALESADTRAAVFVGDVTTPDGRAALEEFVAELFSTR*
Ga0070713_1018837141	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	LVGTDADAEGLGTAALALESADTRAAVFVGDVTTPDGRAALEEFVAELFSTR*
Ga0070711_1011619672	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	DAEGLGAAALALESADTRAAVFVGDVTTPDGRAALEEFVAELFSTR*
Ga0070684_1003961732	3300005535	Corn Rhizosphere	VNVVVLVGSDDDAGALGETARALESETTRAAVFVGDVTTPEGRAALEEFVAELFDRRPA*
Ga0070672_1011422602	3300005543	Miscanthus Rhizosphere	VNVVVLVGTDDTAAALGESARALESDDTRAAVFVGDVTTPEGRAALQQFVEELFPPP*
Ga0070665_1004325492	3300005548	Switchgrass Rhizosphere	VNVVVLVGSEADAAALGETARALTTDTIRAAVFVGDVTTPEGRAALDEFVTELFDHD*
Ga0070665_1013796722	3300005548	Switchgrass Rhizosphere	VNVVVLVGRDDDADALGDTARALESDDTRAAVFVGDVTTPAGRAALAEFVQELFDS*
Ga0070665_1019722702	3300005548	Switchgrass Rhizosphere	VNVVVLVGTESDAAALGEAAAALTDDDTRAAVFVGDVTTSEGRAALEEFVAELFAPRP*
Ga0068866_111131802	3300005718	Miscanthus Rhizosphere	AHVNVVVLVGTDADAEGLGAAALALESADTRAAVFVGDVTTPDGRAALEEFVAELFSTR*
Ga0068860_1006765372	3300005843	Switchgrass Rhizosphere	GPGRAHVNVVVLVGTDADAEGLGAAALALESADTRAAVFVGDVTTPDGRAALEEFVAELFSTR*
Ga0081539_100092361	3300005985	Tabebuia Heterophylla Rhizosphere	VNVVVLVGREGDAAALGETADALASDDTRAAVFVGDVTTPEGRAALQEFVAELFEPRP*
Ga0075023_1000597162	3300006041	Watersheds	VNVIVLVGTDTDAEALGAAAETLATDDTRAAVFLGDVTTPEGRAALQEFVAELFRRH*
Ga0075028_1008310141	3300006050	Watersheds	VNVVVLVGTDDNAESLGESARALESPDTRAAVFVGDVTTPEGRAALEQFVEELFDH*
Ga0075017_1000480703	3300006059	Watersheds	VNVIVLVGTDADAEALGATAQALASDDHRTAVFLGDVTTPVGRAALEEFVRELFPDG*
Ga0070715_102664371	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	GTDADAEGLGAAALALESADTRAAVFVGDVTTPDGRAALEEFVAELFSTR*
Ga0070712_1019581202	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VLVGTDADAEGLGAAALALESADTRAAVFVGDVTTPDGRAALEEFVAELFSTVDRRRRRRNP*
Ga0075021_103556392	3300006354	Watersheds	VNVVVLVGTHDSAAALGETARALESDDTRAAVFVGDITTPEGRAALQEFVQELFPSS*
Ga0079222_103353472	3300006755	Agricultural Soil	VNVVVLVGTEATAAALGDAARALESDDTRAAVFVGDVTTPEGRAALDEFVHELFDPGPS*
Ga0066658_102868532	3300006794	Soil	VLVGREADAPALGETARALESDDTRAAVFVGDVTTAEGRAALDEFVTELFPPPSP*
Ga0075425_1019622722	3300006854	Populus Rhizosphere	VNVVVLVGTDADADRLGVAARALESDDTRAAVFVGDVTTPDGRAALQEFVAELFSA*
Ga0102952_11275822	3300007769	Soil	RDLGGAGGADVNVVVLVATDATAAPLGETARALETDDTRAAVFVGDVTTAEGRTALQEFVAELFDPGPS*
Ga0102952_11970632	3300007769	Soil	LPDRVVVLVGTDAVALGEVARGLASSGLRTAVFVGDVTDPDGRAALEEFVAELFPAEHG*
Ga0102953_12071832	3300007775	Soil	VNVVVLVATDATAAPLGETARALETDDTRAAVFVGDVTTAEGRTALQEFVAELFDPGPS*
Ga0066710_1029603182	3300009012	Grasslands Soil	VKVVVLVGSDAASLGEVARGLESDDTRTAVFVGDVTTPDGRAALHEFVEELFSG
Ga0111539_108695152	3300009094	Populus Rhizosphere	VNVVVLVGTDDTAAALGESARALESEGTRAAVFVGDVTTPEGRAALDEFVNELFPPRP*
Ga0105247_105804642	3300009101	Switchgrass Rhizosphere	GVGSAGGAHVNVVVLVGRADDAAALGDTARALESDDTRAAVFVGDVTTPEGRAALDEFVQELFDPRP*
Ga0105243_105898233	3300009148	Miscanthus Rhizosphere	VNVVVLVGTESNAAALGESARALESDDTRAAVFVGDVTTPEGRAALQQFVEELFPPP*
Ga0105242_124611352	3300009176	Miscanthus Rhizosphere	VNVVVLVGTDDTAAALGETARALESDGTRAAVFVGDVTTPEGRAALEEFVQELFDHPSP*
Ga0126307_100314346	3300009789	Serpentine Soil	VNVVVLVGTDGDAGALGEAARALQSDETRAAVFVGDVTTPEGRAALQEFVEELFPHPHDEPASK*
Ga0126307_115026952	3300009789	Serpentine Soil	VNVVVLVGTDGTAAALGESARALESDHTRAAVFVGDVTTPEGRAALEEFVTELFPPPSP*
Ga0126313_104487531	3300009840	Serpentine Soil	VNVVVLVGTDADAAALGETARVLESDDTRAAVFVGDVTTPEGRAALEEFVRELFPS
Ga0131092_103221143	3300009870	Activated Sludge	VNVVVLVGTEDTAAALGEAAGALASDDTRAAVFVGDVTTPEGRAALEEFVTELFAHP*
Ga0126304_105241492	3300010037	Serpentine Soil	MTADDVALAARVVVLVGTDDTAGALGETARTLEGDDTRAAVFVGDVTTPEGRAALQEFVQELFPPSA*
Ga0126312_112414451	3300010041	Serpentine Soil	VNVVVLVGTDADAAALGETARVLESDDTRAAVFVGDVTTPEGRAALEEFVRELFPPAEQHGPAPG*
Ga0126311_106994142	3300010045	Serpentine Soil	VVLVGTDADAAALGETARALESDDTRAAVFVGDVTTPEGRAALEEFVRELFPSP*
Ga0126306_103566001	3300010166	Serpentine Soil	MTADDVALAARVVVLVGTDDTAAALGETARTLEGDDTRAAVFVGDVTTPEGCAALQEFVQELFPPSA*
Ga0126372_113521022	3300010360	Tropical Forest Soil	VNVVVLVGNDADAEGLGAAARALESGDTRAAVFVGDVTTTDGRAALQELIAELFATADENP*
Ga0134122_130656841	3300010400	Terrestrial Soil	VNVVVLVGRADDAAALGDTARALESDDTRAAVFLGDVTTPEGRAALDE
Ga0134121_124440051	3300010401	Terrestrial Soil	VNVVVLVGTEPDAAALGETARALTTDDTRAAVFVGDVTTPDGRAALDEFVRELFRS*
Ga0105246_122704622	3300011119	Miscanthus Rhizosphere	VNVVVLVGTDGDAAALGEAARALESDDTRAAVFVGDVTTPEGRAALQEFVAELFPPRPNDEHASK*
Ga0137374_104301912	3300012204	Vadose Zone Soil	VNVVVLVGTDAAALGEAARELESDDTRTAVFVGDVTTPEGRAALQEFVTELFG*
Ga0137407_106487402	3300012930	Vadose Zone Soil	VNVVVLVGTDADAAALGASARALTTDDTRAAVFVGDVTTAEGRAALEEFVAELFDHPT*
Ga0164299_104764662	3300012958	Soil	VNVVVLVGRDDDAATLGDTARALESDDTRAAVFVGDVTTPAGRAALAEFVQELFDS*
Ga0164299_116258251	3300012958	Soil	VNVVVLVGTDADAEGLGAAARALESGDTRAAVFVGDVTTPDGRAALQEFVAELFSTR*
Ga0164309_102870412	3300012984	Soil	VNVVVLVGTDDDAAALGETARTLESEATRAAVFVGDVTTPEGRAALQEFVQELFPPSP*
Ga0164308_102883822	3300012985	Soil	VNVVVLVGTDADAAGLGAAARALESDDTRAAVFVGDVTTPDGRAALQEFVAELFSA*
Ga0164308_110241912	3300012985	Soil	VNVVVLVGTDDDAAALGETARTLESEATRAAVFIGDVTTPEGRAALQEFVQELFPPSP*
Ga0164308_118218891	3300012985	Soil	VNVVVLVGRDDDAATLGDTARALESDDTRAAVFVGDVTTPEGRAALQEFVQELFPPSP*
Ga0164304_110053162	3300012986	Soil	VNVVVLVGRDDDADALGDTARALESDDTRAAVFVGDVTTPAGRAALAEFVRELFDS*
Ga0164307_107099191	3300012987	Soil	VNVVVLVGRDDDAATLGDTARALESDDTRAAVFVGDVTTPEGRAALEEFVQELFDSHP*
Ga0164306_109569132	3300012988	Soil	VNVVVLVGTAADAAGLGAAARALESDDTRAAVFVGDVTTPDGRAALQEFVAELFSA*
Ga0164306_110034572	3300012988	Soil	VGRADDAAALGDTARALESDDTRAAVFVGDVTTPEGRAALQEFVQELFPPSP*
Ga0157375_104731462	3300013308	Miscanthus Rhizosphere	VNVVVLVGRDDDADALGDTARALESDDTRAAVFVGDVTTPAGRAALAEFVQELFDHPA*
Ga0163163_102913994	3300014325	Switchgrass Rhizosphere	VNVVVLVGTEPDAAALGESARALASDDTRAAVFVGDVTTPEGRAALQEFVEELFDHPAP*
Ga0182019_111469202	3300014498	Fen	VNVIVLVGTDADALGEAARELASDSTRAAVFVGVVTTPEGRAALQEFVRELFPDG*
Ga0157379_109898762	3300014968	Switchgrass Rhizosphere	VNVVVLVGTDADAEGLGAAALALESADTRAAVFVGDVTTPDGRAALEGFVAELFSTR*
Ga0157376_115216331	3300014969	Miscanthus Rhizosphere	DDDADALGDTARALESDDTRAAVFVGDVTTPAGRAALAEFVQELFGHPSP*
Ga0157376_127536901	3300014969	Miscanthus Rhizosphere	VNVVVLVGRADDAAALGDTARALESDDTRAAVFVGDVTTPEGRAALHEFVQELFDPRP*
Ga0132255_1052989072	3300015374	Arabidopsis Rhizosphere	VNVVVLVGRADDAAALGDTARALESDDTRAAVFVGDVTTPEGRAALDEFVEELFDARP*
Ga0182035_115168071	3300016341	Soil	VNVVVLVGSDADAEGLGAAARALESGDTRAAVFVGDVTSTDGRAALQELVAELFATADEN
Ga0187779_101187212	3300017959	Tropical Peatland	MTRERVVVLVGGDAAALGEAARALEDAGIRAAVFVGDPAAADERAALVEMVEELFPDAFPDA
Ga0190266_103641181	3300017965	Soil	VNVVVLVGEASDAAALGEVARDVTTDETRAAVFFGDVTTPEGRAALDEFVRELFPPRP
Ga0190270_105173944	3300018469	Soil	VNVVVLVGNERDAAALGDAARDLTTDGTRAAVFLGDLTTPEGRAALDEFVT
Ga0190270_131802671	3300018469	Soil	VNVVVLVGTDAAALGRAAQELESEHTRAAVFVGDVTTDDGRAALHEFVTELFSSSS
Ga0190271_110272052	3300018481	Soil	VNVVVLVGNERDAAALGEAARDLADDGTRAAVFLGDLTTPEGRAALDEFVTELFS
Ga0193727_11701742	3300019886	Soil	VNVVVLVGSGADADGLGAAARSLESDDTRAAVFVGDVTTPDGRAALEEFVAELFSAP
Ga0206356_107761021	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	VNVVVLVGSDDDAGALGETARALESDTTRAAVFVGDVTTSEGRAALEEFVTELFDPRP
Ga0207642_106417512	3300025899	Miscanthus Rhizosphere	VNVVVLVGTESDAAALGDAAAALTTDDTRAAVFVGDVTTPEGRAALDEFVQELFDS
Ga0207685_105044972	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	GGVRGGVGAPGRAHVNVVVLVGTDADAEGLGAAALALESADTRAAVFVGDVTTPDGRAALEEFVAELFSTR
Ga0207662_109270612	3300025918	Switchgrass Rhizosphere	VNVVVLVGTDDTAAALGESARALESDDTRAAVFVGDVTTPEGRAALQEFVDELFPPRP
Ga0207687_110327281	3300025927	Miscanthus Rhizosphere	GGAGGAHVNVVVLVGRDDDADALGDTARALESDDTRAAVFVGDVTTPAGRAALAEFVQELFDHPA
Ga0207687_113648761	3300025927	Miscanthus Rhizosphere	VNVVVLVGTDGDAAALGEAARALESDDTRAAVFVGDVTTPEGRAALQEFVAEVFPP
Ga0207644_109371472	3300025931	Switchgrass Rhizosphere	VNVVVLVGRADDAAALGDTARALESDDTRAAVFVGDVTTPEGRAALDEFVQELFDPRP
Ga0207686_116500762	3300025934	Miscanthus Rhizosphere	VNVVVLVGTDDTAAALGETARALESDGTRAAVFVGDVTTPEGRAALEEFVQELFDHPSP
Ga0207669_102937502	3300025937	Miscanthus Rhizosphere	VVLVGRDDDADALGDTARALESDDTRAAVFVGDVTTPAGRAALAEFVQELFDHPA
Ga0207689_107767961	3300025942	Miscanthus Rhizosphere	VNVVVLVGTDGDAAALGEAARALESDDTRAAVFVGDVTTPEGRAALEEFVAELFPPPSQ
Ga0207658_117307242	3300025986	Switchgrass Rhizosphere	VVVLVGTDDTAAALGESARALESDDTRAAVFVGDVTTPEGRAALDEFIQELFDPRP
Ga0207675_1001936362	3300026118	Switchgrass Rhizosphere	VNVVVLVGTDDTAAALGETARALESDDTRAAVFVGDVTTPEGRAALDEFVQELFDPRP
Ga0209068_109523692	3300027894	Watersheds	VNVVVLVGTHDSAAALGETARALESDDTRAAVFVGDITTPEGRAALQEFVQELFPSS
Ga0209583_101144292	3300027910	Watersheds	VNVIVLVGTDTDAEALGAAAETLATDDTRAAVFLGDVTTPEGRAALQEFVAELFRRH
Ga0268266_117669702	3300028379	Switchgrass Rhizosphere	VNVVVLVGTESDAAALGEAAAALTDDDTRAAVFVGDVTTSEGRAALEEFVAELFAPRP
Ga0265337_11962571	3300028556	Rhizosphere	VNVVVLVGTEADAAALGETARALASDDTRAAVFIGDVTTSEGRAALEEFVQELFPA
Ga0265322_102011182	3300028654	Rhizosphere	VNVVVLVGSAAAAAGLGESARAIESADTRTAVFIGDVTTPDGRAALEAFVAELFDH
Ga0247824_111162782	3300028809	Soil	VNVVVLVGTDDSAAALGETARALEADDTRAAVFVGDVTTPEGRAALDEFVKELFPPSL
Ga0307302_106387291	3300028814	Soil	VNVVVLVGSDAAALGEAARELESDDTRAAVFVGDVTTPDGRAALEEFLA
Ga0307296_102942642	3300028819	Soil	VNVVVLVGSDAAALGEAARELESDDTRAAVFVGDVTTPEGRAALHEFVTELFGA
Ga0265327_100735202	3300031251	Rhizosphere	VNVVVLVGTETDAAALGETARALATDDTRAAVFVGDVATPEGRAALQEFVAELFPA
Ga0306926_120861201	3300031954	Soil	VNVVVLVGSDADAEGLGAAARALESGDTRAAVFVGDVTSTDGRAALQE
Ga0307472_1017554082	3300032205	Hardwood Forest Soil	VNVVVLVGTDADAEGLGVAALALESADTRAAVFVGDVTTPDGRAALEEFVAELFSTVDRRRRRRNP
Ga0306920_1005906042	3300032261	Soil	VNVVVLVGTDAEGAALGAAADALSSDDTRAAVFLGDVTTPQGRAALEEFVAELFDHP
Ga0335085_113183352	3300032770	Soil	VNVVVLVGTDADAAALGDTARVMESDDTRVAVFVGDVSTPAGRAALEDFVAELFDHP
Ga0335076_108967752	3300032955	Soil	VNVVVLVATDDTAAAVGETARALETDDTRAAVFVGDVTTPEGCAALQEFVAELFDH

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.69
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.69
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090930

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign