Metagenome Family F090927

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090927
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	41 residues
Representative Sequence	MDSALLQNLMAGAGSSSQFIGGLVVALLYAVIGLLSAIGSI
Number of Associated Samples	85
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	93.52 %
% of genes near scaffold ends (potentially truncated)	97.22 %
% of genes from short scaffolds (< 2000 bps)	96.30 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (62.963 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.296 % of family members)
Environment Ontology (ENVO)	Unclassified (40.741 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.037 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.62% β-sheet: 0.00% Coil/Unstructured: 46.38%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF04392	ABC_sub_bind	10.19
PF05694	SBP56	2.78
PF06823	DUF1236	2.78
PF04752	ChaC	1.85
PF14534	DUF4440	1.85
PF03625	DUF302	0.93
PF08484	Methyltransf_14	0.93
PF13417	GST_N_3	0.93
PF02518	HATPase_c	0.93
PF13649	Methyltransf_25	0.93
PF00239	Resolvase	0.93
PF01638	HxlR	0.93
PF07969	Amidohydro_3	0.93
PF06568	DUF1127	0.93
PF08309	LVIVD	0.93
PF08028	Acyl-CoA_dh_2	0.93
PF05532	CsbD	0.93
PF13191	AAA_16	0.93
PF00072	Response_reg	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	10.19
COG3703	Gamma-glutamylcyclotransferase ChaC2 (glutathione degradation)	Inorganic ion transport and metabolism [P]	1.85
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.93
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.93
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.93
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.93
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.93
COG3439	Uncharacterized conserved protein, DUF302 family	Function unknown [S]	0.93
COG5276	Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain	Function unknown [S]	0.93
COG5457	Uncharacterized conserved protein YjiS, DUF1127 family	Function unknown [S]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.96 %
Unclassified	root	N/A	37.04 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.96 %
Unclassified	root	N/A	37.04 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.96 %
Unclassified	root	N/A	37.04 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	43.52 %
Unclassified	root	N/A	37.04 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.85 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	37.96 %
Unclassified	root	N/A	37.04 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.85 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.04 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	17.59 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	3.70 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.70 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.85 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.04 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	8.33 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.70 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	3.70 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.85 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.85 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.93 %
Halomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae	0.93 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.93 %
Hyphomicrobiales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.04 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	8.33 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.70 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	3.70 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.85 %
Pseudorhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes	0.93 %
Halomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas	0.93 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	0.93 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.93 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.93 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.04 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.70 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	3.70 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.78 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.85 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.93 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.93 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	0.93 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.93 %
Microvirga massiliensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga massiliensis	0.93 %
Halomonas qijiaojingensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas → Halomonas qijiaojingensis	0.93 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.04 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.70 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	3.70 %
Bradyrhizobium sp. URHD0069	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	2.78 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.85 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.93 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.93 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	0.93 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.93 %
Microvirga massiliensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga massiliensis	0.93 %
Halomonas qijiaojingensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas → Halomonas qijiaojingensis	0.93 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573004\|GZGWRS402I1Z1E	Not Available	503	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0603484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	972	Open in IMG/M
3300000443\|F12B_12768773	Not Available	599	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10168399	Not Available	522	Open in IMG/M
3300000789\|JGI1027J11758_13022137	Not Available	632	Open in IMG/M
3300000955\|JGI1027J12803_103617535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	749	Open in IMG/M
3300000955\|JGI1027J12803_105890950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	619	Open in IMG/M
3300004480\|Ga0062592_102135147	Not Available	556	Open in IMG/M
3300004643\|Ga0062591_101705653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	639	Open in IMG/M
3300005328\|Ga0070676_10878228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	666	Open in IMG/M
3300005330\|Ga0070690_101633338	Not Available	523	Open in IMG/M
3300005332\|Ga0066388_103145338	All Organisms → cellular organisms → Bacteria → Proteobacteria	843	Open in IMG/M
3300005332\|Ga0066388_106902634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	571	Open in IMG/M
3300005332\|Ga0066388_107761096	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300005332\|Ga0066388_108371889	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300005436\|Ga0070713_102376332	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300005544\|Ga0070686_101591119	Not Available	553	Open in IMG/M
3300005547\|Ga0070693_101352297	Not Available	552	Open in IMG/M
3300005713\|Ga0066905_102226215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	511	Open in IMG/M
3300005764\|Ga0066903_100601026	All Organisms → cellular organisms → Bacteria	1906	Open in IMG/M
3300005764\|Ga0066903_105374641	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300005764\|Ga0066903_106653771	Not Available	601	Open in IMG/M
3300005764\|Ga0066903_106694111	Not Available	599	Open in IMG/M
3300006163\|Ga0070715_10325925	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300007076\|Ga0075435_100854192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	793	Open in IMG/M
3300009034\|Ga0115863_1816578	Not Available	1036	Open in IMG/M
3300009792\|Ga0126374_10902774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	685	Open in IMG/M
3300009792\|Ga0126374_11091800	Not Available	632	Open in IMG/M
3300010046\|Ga0126384_10219323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1518	Open in IMG/M
3300010046\|Ga0126384_10506698	All Organisms → cellular organisms → Bacteria	1041	Open in IMG/M
3300010047\|Ga0126382_10796180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	805	Open in IMG/M
3300010047\|Ga0126382_11412599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	635	Open in IMG/M
3300010358\|Ga0126370_12573009	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300010359\|Ga0126376_12025774	All Organisms → cellular organisms → Bacteria → Proteobacteria	618	Open in IMG/M
3300010366\|Ga0126379_10636023	Not Available	1156	Open in IMG/M
3300010373\|Ga0134128_12882137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	530	Open in IMG/M
3300010376\|Ga0126381_103063025	Not Available	663	Open in IMG/M
3300010398\|Ga0126383_12960944	Not Available	555	Open in IMG/M
3300012349\|Ga0137387_11203166	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300012948\|Ga0126375_10714800	All Organisms → cellular organisms → Bacteria → Proteobacteria	782	Open in IMG/M
3300012971\|Ga0126369_12292118	Not Available	627	Open in IMG/M
3300012989\|Ga0164305_11801164	Not Available	553	Open in IMG/M
3300015201\|Ga0173478_10621171	Not Available	565	Open in IMG/M
3300015372\|Ga0132256_102555634	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300016294\|Ga0182041_10322268	All Organisms → cellular organisms → Bacteria	1289	Open in IMG/M
3300016357\|Ga0182032_10533773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	969	Open in IMG/M
3300016371\|Ga0182034_10057594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga massiliensis	2601	Open in IMG/M
3300016371\|Ga0182034_10315824	Not Available	1257	Open in IMG/M
3300016387\|Ga0182040_10124176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1796	Open in IMG/M
3300016387\|Ga0182040_11688539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	541	Open in IMG/M
3300016422\|Ga0182039_10849890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	812	Open in IMG/M
3300016445\|Ga0182038_10956320	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300016445\|Ga0182038_11469696	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300017792\|Ga0163161_10367343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1147	Open in IMG/M
3300018431\|Ga0066655_10722159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	675	Open in IMG/M
3300019356\|Ga0173481_10441765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	648	Open in IMG/M
3300019890\|Ga0193728_1207389	Not Available	818	Open in IMG/M
3300021560\|Ga0126371_11536086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	793	Open in IMG/M
3300021560\|Ga0126371_12131100	Not Available	676	Open in IMG/M
3300026313\|Ga0209761_1227744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	769	Open in IMG/M
3300027703\|Ga0207862_1008658	Not Available	2970	Open in IMG/M
3300027722\|Ga0209819_10261453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	599	Open in IMG/M
3300027874\|Ga0209465_10202912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	990	Open in IMG/M
3300027874\|Ga0209465_10258881	All Organisms → cellular organisms → Bacteria → Proteobacteria	871	Open in IMG/M
3300027903\|Ga0209488_10205261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1484	Open in IMG/M
3300027915\|Ga0209069_11026937	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300028047\|Ga0209526_10689940	Not Available	644	Open in IMG/M
3300028720\|Ga0307317_10153081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	775	Open in IMG/M
3300028799\|Ga0307284_10271670	Not Available	677	Open in IMG/M
3300030006\|Ga0299907_11024985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas → Halomonas qijiaojingensis	605	Open in IMG/M
3300031543\|Ga0318516_10797498	Not Available	533	Open in IMG/M
3300031713\|Ga0318496_10206198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1081	Open in IMG/M
3300031719\|Ga0306917_10971765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	663	Open in IMG/M
3300031719\|Ga0306917_11239806	Not Available	578	Open in IMG/M
3300031765\|Ga0318554_10071878	All Organisms → cellular organisms → Bacteria → Proteobacteria	1918	Open in IMG/M
3300031768\|Ga0318509_10510030	Not Available	672	Open in IMG/M
3300031779\|Ga0318566_10239105	Not Available	901	Open in IMG/M
3300031792\|Ga0318529_10451486	Not Available	598	Open in IMG/M
3300031833\|Ga0310917_10878365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	604	Open in IMG/M
3300031846\|Ga0318512_10406626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	684	Open in IMG/M
3300031879\|Ga0306919_10030976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	3372	Open in IMG/M
3300031879\|Ga0306919_11485265	Not Available	510	Open in IMG/M
3300031890\|Ga0306925_10852789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	941	Open in IMG/M
3300031910\|Ga0306923_11165539	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300031910\|Ga0306923_11868162	Not Available	614	Open in IMG/M
3300031912\|Ga0306921_11125590	Not Available	878	Open in IMG/M
3300031912\|Ga0306921_12205336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	580	Open in IMG/M
3300031941\|Ga0310912_11023100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	633	Open in IMG/M
3300031942\|Ga0310916_11225107	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300031942\|Ga0310916_11643528	Not Available	521	Open in IMG/M
3300031945\|Ga0310913_10264441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1210	Open in IMG/M
3300031945\|Ga0310913_10309351	Not Available	1115	Open in IMG/M
3300031946\|Ga0310910_10761641	Not Available	764	Open in IMG/M
3300031947\|Ga0310909_10032618	All Organisms → cellular organisms → Bacteria	3880	Open in IMG/M
3300031947\|Ga0310909_11062336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	659	Open in IMG/M
3300031947\|Ga0310909_11336320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	575	Open in IMG/M
3300031959\|Ga0318530_10490279	Not Available	511	Open in IMG/M
3300032001\|Ga0306922_12172642	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300032012\|Ga0310902_11039586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	570	Open in IMG/M
3300032044\|Ga0318558_10638134	Not Available	532	Open in IMG/M
3300032059\|Ga0318533_10891106	Not Available	653	Open in IMG/M
3300032076\|Ga0306924_10320620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1777	Open in IMG/M
3300032090\|Ga0318518_10333194	Not Available	779	Open in IMG/M
3300032180\|Ga0307471_100489351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1376	Open in IMG/M
3300032261\|Ga0306920_101971183	Not Available	819	Open in IMG/M
3300032892\|Ga0335081_10700023	All Organisms → cellular organisms → Bacteria	1229	Open in IMG/M
3300033289\|Ga0310914_10629715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	966	Open in IMG/M
3300033290\|Ga0318519_10199598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1140	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.30%
Host-Associated	Host-Associated	3.70%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.52%
Plants	Host-Associated → Plants	3.70%
Aquatic	Environmental → Aquatic	2.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.52%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.78%
Freshwater	Environmental → Aquatic → Freshwater	0.93%
Marine	Environmental → Aquatic → Marine	0.93%
Sediment	Environmental → Aquatic → Sediment	0.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.00%
Loam	Environmental → Terrestrial → Soil → Loam	17.59%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.85%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.93%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	42.59%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.07%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.04%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.56%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.63%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.93%
Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Sediment	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.30%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.44%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	13.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.70%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.78%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.85%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.85%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.93%
Sediment, Intertidal	Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Sediment, Intertidal	0.93%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573004	Grass soil microbial communities from Rothamsted Park, UK - FG2 (Nitrogen)	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009034	Intertidal mud flat sediment archaeal communities from Garolim Bay, Chungcheongnam-do, Korea	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027722	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FG2_08450160	2189573004	Grass Soil	MDSALLRNLMAGAGSSSQFTGGLVVALLYLVIGLVV
ICChiseqgaiiDRAFT_06034842	3300000033	Soil	VESALLKNLMTGAGSSGQFIGGVVVTLLYAVIGLL
F12B_127687731	3300000443	Soil	MDSALLQNLLTGAASSSQFIGGXXXXMLYAVIGLLGAIGSIVVFRR
AF_2010_repII_A1DRAFT_101683991	3300000597	Forest Soil	MNSALLQDLMAGAGSSSRFIGGLVVALLYAVIGLLSAIGSIV
JGI1027J11758_130221371	3300000789	Soil	MRTTLLQNLMAGTGSTSQLVGGFVVALLYAVVGLLSAIGSILVF
JGI1027J12803_1036175353	3300000955	Soil	MDAALLKNLLAGAGSTSQFVGGLIIALLYVVVGLL
JGI1027J12803_1058909501	3300000955	Soil	MDTALLQNLVAGAGSSSQFIGGLVVAVLYAVVGLLGAIGSIVVFRR
Ga0062592_1021351471	3300004480	Soil	MDGALLQNLFAGAGSTSQLVGGLIIALLYVVVGLLGAIGSILV
Ga0062591_1017056532	3300004643	Soil	MDSALLQNLMAGAGSSSQFIGGLIVALLYVVIGLLGAIGSIVVFRRI
Ga0070676_108782281	3300005328	Miscanthus Rhizosphere	MGSALLQNLTAGAGSSSQFIGGLIVALLYVVIGLLGAIGSIVVFRR
Ga0070690_1016333381	3300005330	Switchgrass Rhizosphere	MDSALLQNLIAGAGSSSQFIGGLVVALLYVVIGLLGAIGSIV
Ga0066388_1031453381	3300005332	Tropical Forest Soil	MKDVGAMKMESALLKNLLTGAGSSSQFIGGLVVALLYVVIGLLGAIG
Ga0066388_1069026341	3300005332	Tropical Forest Soil	LGTALLHNLIAGAGSSSQFVGGLVVAVLYAVVGLLGAIGSILVF
Ga0066388_1077610961	3300005332	Tropical Forest Soil	MESALLKNLLTGAGSSSQFIGGLVVALLYVVIGLLGAIGSIL
Ga0066388_1083718892	3300005332	Tropical Forest Soil	MDSALLKNLVTGAGSSSQFFGGLVVALLYVVIGVLGAIGSILVFR
Ga0070713_1023763321	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MNSALLQNLMAGAGSSSQFVGGLVVALLYVVIGLLSAIGSIA
Ga0070686_1015911192	3300005544	Switchgrass Rhizosphere	MDSALLQNLIAGAGSSSQFIGGLVVALLYVVIGLLGAIGSIVVFRRI
Ga0070693_1013522971	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MDSALLQNLIAGAGSSSQFIGGLVVALLYVVIGLLGAIGSIVVFRR
Ga0066905_1022262153	3300005713	Tropical Forest Soil	LDSALLHNLIAGAGSSSQFVGGLVVAVLYAVVGLLGAIGSILVF
Ga0066903_1006010261	3300005764	Tropical Forest Soil	MDSALLQNLISGAGSNGQFIGGLVVAMLYVVIGLLG
Ga0066903_1053746412	3300005764	Tropical Forest Soil	MRATLLQSLTAGTGSASQLVGGLFVALLYAVVGLLS
Ga0066903_1066537712	3300005764	Tropical Forest Soil	MDSALLQSLMAGAGSSSRFIGGLVVALLYAVIGLLSAIGSIVVFRRI
Ga0066903_1066941111	3300005764	Tropical Forest Soil	MDSALLKNLVTGAGSSSQFVGGLVVALLYAVIGVLGAIGSILVFR
Ga0070715_103259251	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MDSALLQNLIAGAGSSSQFIGRLVVALLYVVIGLL
Ga0075435_1008541922	3300007076	Populus Rhizosphere	MDSALLQNLIAGAGSSSQLIGGLVVALLYFVIGLLG
Ga0115863_18165783	3300009034	Sediment, Intertidal	MNAALLQNLIAGAESSSQFIGGLVVLVLYAVVGLLGASMLRSA*
Ga0126374_109027741	3300009792	Tropical Forest Soil	MDSALLQNLMAGAGSSGRFIGGLVVALLYAVIGLLSAIGSIVVF
Ga0126374_110918001	3300009792	Tropical Forest Soil	MDSALLKNLVTGAGSSSQFIGGLVVALLYLVIGVLGAIGSIIVFR
Ga0126384_102193231	3300010046	Tropical Forest Soil	MNSALLQNLITGAGSSSQFIGGLVVAVLYVVIGLLSAIGSILIF
Ga0126384_105066982	3300010046	Tropical Forest Soil	MNSALLQNLVAGAGSSSQLIGGLIVAVLYAVIGVLGATGSIL
Ga0126382_107961802	3300010047	Tropical Forest Soil	MDSALLQNLMTGAGSSSQFIGGLVVALLYAVIGLLSAIGSIVV
Ga0126382_114125991	3300010047	Tropical Forest Soil	LEQKLGSALLHNLIAGAGSSSQFVGGLVVAVLYAVIG
Ga0126370_125730091	3300010358	Tropical Forest Soil	MDSTLLRNLTTGAGSSGQFIGGLVVALLYVVIGVLAAIGSILVF
Ga0126376_120257742	3300010359	Tropical Forest Soil	MESALLKNLLTGAGSGSQFIGGLVVVLLYVVIGLLGAIG
Ga0126379_106360232	3300010366	Tropical Forest Soil	LEQKLDSALLHNLIIGAGSSSQFVGGLVVAVLYAVIGLLGAI
Ga0134128_128821371	3300010373	Terrestrial Soil	MQNLMTGTGSSSQLVGGFVVGMLYAVIGLLSAIGSIVV
Ga0126381_1030630251	3300010376	Tropical Forest Soil	MDSPLLKNLVAGAGSSSQFIGGLVVAMLYAVIGVLGAVGSILVFRRI
Ga0126383_129609442	3300010398	Tropical Forest Soil	MNSALLQNLAAGAGSSSQFIGGLVVALLYVVIGLLSAIGSILIFRRI
Ga0137387_112031662	3300012349	Vadose Zone Soil	MNSALLQNLMAGAGSSSQFVGGLVVALLYVVIGLL
Ga0126375_107148001	3300012948	Tropical Forest Soil	MDSALLQNLIAGAGSSSQLIGGLVVALLYFVVGLLSAI
Ga0126369_122921182	3300012971	Tropical Forest Soil	MDSALLQNLMAGAGSSSRFIGGLVVALLYAVIGLLSAIGSIVVFRR
Ga0164305_118011642	3300012989	Soil	MDSALLENLVTGAGSTSQFIGGLVIAFLYGVVGLLGA
Ga0173478_106211711	3300015201	Soil	MDSALLQNLMAGAGSSSQFIGGLIVALLYVVIGLL
Ga0132256_1025556342	3300015372	Arabidopsis Rhizosphere	MGATKMNSALLQNLMAGAGSSSQFIGGLVVALLYVVIGLLSAIG
Ga0182041_103222681	3300016294	Soil	MNSALLQNLVAGAGSSSQFIGGLVVALLYLVVGLLGAIGSILVFRRI
Ga0182032_105337732	3300016357	Soil	MNSTLLQNLIVDAESSSQFVGGLVIALLYVVIGLLSAIG
Ga0182034_100575941	3300016371	Soil	MNSTLLQSLIADAESSSQFVGGLVIALLYVVIGLLSAIGISYFSANL
Ga0182034_103158242	3300016371	Soil	MNSALLQNLMAGAESSSQFIGGLVVALLYVVIGLLSAIGSIAV
Ga0182040_101241761	3300016387	Soil	MDSGLLHNLLTGTGSSTQLTGGIVVALLYAVIGLLGAVGSILVVRRM
Ga0182040_116885391	3300016387	Soil	MHSTGSTLLQNLIAGTGSNGQFVGGLVVALLYLVIGLLGA
Ga0182039_108498901	3300016422	Soil	LDSALLHNLIAGAGSSSHFIGGLVVAVLYAVIGLLGAIGSI
Ga0182038_109563201	3300016445	Soil	MDTALLQNLISGAGSTSRLIGGLVVAMLYLVIGLLGAIGSILVFR
Ga0182038_114696962	3300016445	Soil	MNSALLQNLMAGAGSSSQFIGGLVVALLYVVIGLLSA
Ga0163161_103673431	3300017792	Switchgrass Rhizosphere	VRAALMQNLMTGTGSSSQLVGGFVVGMLYAVIGLLSAIGS
Ga0066655_107221591	3300018431	Grasslands Soil	MDSALLQNLLAGAGSSSQFMGGVVVAQSTVVAGLPR
Ga0173481_104417652	3300019356	Soil	MDSALLQNLMAGAGSSSQFIGGLIVALLYVVIGLLGA
Ga0193728_12073892	3300019890	Soil	MDSALLHSLIAGAGSSSKFIGGLIVAMLYAVIGLLSATGSILVF
Ga0126371_115360861	3300021560	Tropical Forest Soil	MDSALLQSLMAGAGSSSRFIGGLVVALLYAVIGLLSAI
Ga0126371_121311002	3300021560	Tropical Forest Soil	MMDSGLLHNLLTGTGSSIQLIGGIVVALLYTVIGLLGAVGSI
Ga0209761_12277441	3300026313	Grasslands Soil	MNSALLQNLMAGAGSSSQFIGGLVVALLYVVIGLLSAIGSILIFR
Ga0207862_10086587	3300027703	Tropical Forest Soil	MDSALLKNLVTGSGSSSQFIGGLVVALLYVVIGVLGAIGSILVF
Ga0209819_102614531	3300027722	Freshwater Sediment	VRAALMQNLMTGTGSSSQLVGGFVVGMLYAVIGLLSA
Ga0209465_102029121	3300027874	Tropical Forest Soil	MKMESALLKNLLTGAGSSSQFIGGLVVALLYVVIGLLGA
Ga0209465_102588811	3300027874	Tropical Forest Soil	LEQKLGSALLHNLIAGAGSSSQFVGGLVVAVLYAVIGSLGAIGSILVFRR
Ga0209488_102052613	3300027903	Vadose Zone Soil	MDSALLKHLMAGAGSSSQFVGGLIVALLYVVIGLLSAIGSIV
Ga0209069_110269372	3300027915	Watersheds	MDSALLQNLIAGAGSSSQFVGGLVVALLYVVIGLLSAIGSILIF
Ga0209526_106899401	3300028047	Forest Soil	MDSALLRNLMTGAGSSSQFIGGLVVALLYVVIGLLSSIGSILIFRRI
Ga0307317_101530812	3300028720	Soil	MEKALLQNLMAGAGSSSQFVGGLTVALLYVVIGLLSGIGSILIF
Ga0307284_102716702	3300028799	Soil	MEKALLQNLMAGAGSSSQFVGGLTVALLYVVIGLLSGIGSILIFR
Ga0299907_110249852	3300030006	Soil	MNAALLQNLVAGAGSSSQLIGGLVVALLYAVIGLLGAIGS
Ga0318516_107974981	3300031543	Soil	MVNTALLKNLVTGAGSTSQLIGGLVVAMLYAVVGVLGAIGS
Ga0318496_102061984	3300031713	Soil	MDSALLQNLIAGAGSGSRLIGGLVVALLYAVIGLLSAI
Ga0306917_109717651	3300031719	Soil	VDSALLQNLMAGAGSSSQFIGGLIVAVLYVVIGLLSAIGSIL
Ga0306917_112398062	3300031719	Soil	MDSALLKNLVSGAGSSSQFIGGLVVALLYAVVGLLGAIGS
Ga0318554_100718781	3300031765	Soil	MASALLQNLMTGAGSSSRFIGGLVVALLYAVIGLLSAF
Ga0318509_105100301	3300031768	Soil	MESALLRNLVAGAGSSSQFIGGLVIALLYVVVGLLGAIGSILVFRRI
Ga0318566_102391052	3300031779	Soil	MDSALLKNLVTGAGSSSQFVGGLVVALLYVVIGVL
Ga0318529_104514861	3300031792	Soil	LGSALLHNLIAGAGSSSQFIGGLVVAVLYAVIGLLGAIGSILVIVFRRI
Ga0310917_108783651	3300031833	Soil	MGSPLLKNLVAGAGSSSQFIGGLVVAMLYAVIGVLG
Ga0318512_104066263	3300031846	Soil	MDSALLQNLIAGAGSGSRLIGGLVVALLYAVIGLLSA
Ga0306919_100309764	3300031879	Soil	MNSALLQNLMAGAGSSSQFIGGLVVALLYVVIGLLSAI
Ga0306919_114852651	3300031879	Soil	MDSTLLRDLMAGAGSSGQFIGGLVVALLYLVIGVL
Ga0306925_108527891	3300031890	Soil	VDSALLQNLMVGAGSSSQFIGGLIVAMLYAVVGLLAAVG
Ga0306923_111655391	3300031910	Soil	MDSGLLHNLLTGTGSSTQLIGGIVVALLYAVIGLLGA
Ga0306923_118681622	3300031910	Soil	MDSALLQNLVAGTGSSNRFIGGLVIALLYVVIGLLSAI
Ga0306921_111255901	3300031912	Soil	MDSALLKNLVTGAGSSSQFVGGLVVALLYAVIGVLGAIGSIL
Ga0306921_122053361	3300031912	Soil	LDSALLHNLIAGAGSSSQFIGGLVVAVLYTVIGLLGAIGSILVF
Ga0310912_110231002	3300031941	Soil	MNSTLLQSLIAGAESSSQFVGGLVIALLYVVIGLLSAIGSILI
Ga0310916_112251071	3300031942	Soil	MDPALLQNLVAGAGSSSQFIGGLVIALLYMVIGLLSAIG
Ga0310916_116435282	3300031942	Soil	MDSTLLRDLMAGAGSSSQFIGGLVVALLYLVIGVLAAIGS
Ga0310913_102644412	3300031945	Soil	LDSALLHSLITGAGSSSQFIGGLVVAVLYAVIGVL
Ga0310913_103093513	3300031945	Soil	LGSALLHNLIAGAGSSSQFIGGLVVAVLYAVIGLLGAIGSI
Ga0310910_107616412	3300031946	Soil	MDSPLLKNLVAGAGSSSQLIGGLVMAMLYAVIGVLGAVGSILVVRRI
Ga0310909_100326181	3300031947	Soil	MDSPLLKNLVAGAGSSSQLIGGLVMAMLYAVIGVLGAV
Ga0310909_110623361	3300031947	Soil	MDSTLLQNLIAGAGSSSQFVGGLVVALLYTVIGVLGATGSILVFR
Ga0310909_113363202	3300031947	Soil	LDSALLHNLIAGAGSSSQFIGGLVVAVFYTVIGLL
Ga0318530_104902791	3300031959	Soil	MDSGLLQNLMAGAGSSSRFIGGLVVALLYAVIGLLSAIGSIVV
Ga0306922_121726422	3300032001	Soil	MASGLLHNLLTGAGSSSRLIGGMVVVLLYAVIGLLAAVGSILV
Ga0310902_110395861	3300032012	Soil	VRAALMQNLMTGTGSSSQLVGGFVVGMLYAVIGLLSAIGSIVV
Ga0318558_106381342	3300032044	Soil	MESALLRNLVAGAGSSSQFIGGLAIALLYVVIGLLG
Ga0318533_108911062	3300032059	Soil	MDSPLLKNLVAGAGSSSQFIGGLVVAMLYAVIGVLGAVGSILVFR
Ga0306924_103206201	3300032076	Soil	MQTGLGEATGMDSALLKNLMTGSGSSSQFIGGLVVALLYVVIG
Ga0318518_103331942	3300032090	Soil	MDSALLKNLVTGAGSSSQFVGGLVVALLYAVIGVLGA
Ga0307471_1004893512	3300032180	Hardwood Forest Soil	MESALLKNLLSGAGSSSQFIGGVIVTLLYAVIVLLSAI
Ga0306920_1019711831	3300032261	Soil	MDSTLLRNLTTGAGSSGQFIGGLVVALLYAVIGVLG
Ga0335081_107000233	3300032892	Soil	MEKALLQNLMAGAGSSSQFIGGLIVALLYAVIGLLSAIGSI
Ga0310914_106297151	3300033289	Soil	VDSALLQNLMVGAGSSSQFIGGLIVAMLYAVVGLLAAVGSIVV
Ga0318519_101995983	3300033290	Soil	MDSALLQNLMAGAGSSSQFIGGLVVALLYAVIGLLSAIGSI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F090927

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences