Metagenome / Metatranscriptome Family F090921

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090921
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	76 residues
Representative Sequence	MFTAEQYRAKAAEFNAFLANTPRSPNETSEFRNLAQTYTTLAENEEWMAVHLDRTVQRRKHGDDSAALAEVEEQIL
Number of Associated Samples	102
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	86.11 %
% of genes near scaffold ends (potentially truncated)	66.67 %
% of genes from short scaffolds (< 2000 bps)	90.74 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.889 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (11.111 % of family members)
Environment Ontology (ENVO)	Unclassified (32.407 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (43.519 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 65.38% β-sheet: 0.00% Coil/Unstructured: 34.62%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF13439	Glyco_transf_4	10.19
PF02652	Lactate_perm	0.93
PF03401	TctC	0.93
PF01925	TauE	0.93
PF00589	Phage_integrase	0.93
PF13586	DDE_Tnp_1_2	0.93
PF05532	CsbD	0.93
PF06823	DUF1236	0.93
PF13581	HATPase_c_2	0.93
PF12706	Lactamase_B_2	0.93
PF00665	rve	0.93
PF04545	Sigma70_r4	0.93
PF03450	CO_deh_flav_C	0.93
PF04546	Sigma70_ner	0.93
PF13683	rve_3	0.93
PF13579	Glyco_trans_4_4	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.93
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.93
COG1620	L-lactate permease	Energy production and conversion [C]	0.93
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.93
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.93
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.93
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.93
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.93
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.89 %
Unclassified	root	N/A	11.11 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.89 %
Unclassified	root	N/A	11.11 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.89 %
Unclassified	root	N/A	11.11 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	85.19 %
Unclassified	root	N/A	11.11 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	82.41 %
Unclassified	root	N/A	11.11 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	68.52 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11.11 %
Unclassified	root	N/A	11.11 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	67.59 %
Unclassified	root	N/A	11.11 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.63 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.93 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	67.59 %
Unclassified	root	N/A	11.11 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.70 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.93 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	67.59 %
Unclassified	root	N/A	11.11 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	3.70 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.93 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	67.59 %
Unclassified	root	N/A	11.11 %
Bradyrhizobium sp. 174	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 174	3.70 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.93 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16797259	All Organisms → cellular organisms → Bacteria	2471	Open in IMG/M
2170459003\|FZ032L002G2TB8	Not Available	522	Open in IMG/M
2170459003\|FZ032L002JQER3	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	515	Open in IMG/M
2170459019\|G14TP7Y02H3JTC	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	542	Open in IMG/M
3300000858\|JGI10213J12805_10716433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	677	Open in IMG/M
3300002244\|JGI24742J22300_10116628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	525	Open in IMG/M
3300004139\|Ga0058897_11080242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	654	Open in IMG/M
3300004156\|Ga0062589_102355332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	548	Open in IMG/M
3300004479\|Ga0062595_101140093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	686	Open in IMG/M
3300005165\|Ga0066869_10144758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	510	Open in IMG/M
3300005177\|Ga0066690_10392243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	942	Open in IMG/M
3300005183\|Ga0068993_10292208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	587	Open in IMG/M
3300005184\|Ga0066671_10791570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	607	Open in IMG/M
3300005330\|Ga0070690_101141254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	619	Open in IMG/M
3300005331\|Ga0070670_100069622	Not Available	3020	Open in IMG/M
3300005437\|Ga0070710_10234733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1172	Open in IMG/M
3300005439\|Ga0070711_100943852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	738	Open in IMG/M
3300005439\|Ga0070711_101437928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	600	Open in IMG/M
3300005451\|Ga0066681_10583998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	689	Open in IMG/M
3300005455\|Ga0070663_100221251	Not Available	1486	Open in IMG/M
3300005455\|Ga0070663_101566439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	587	Open in IMG/M
3300005548\|Ga0070665_102001187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	584	Open in IMG/M
3300005552\|Ga0066701_10454621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	795	Open in IMG/M
3300005615\|Ga0070702_100678324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	783	Open in IMG/M
3300005616\|Ga0068852_100150402	All Organisms → cellular organisms → Bacteria	2164	Open in IMG/M
3300005618\|Ga0068864_100843015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	903	Open in IMG/M
3300005719\|Ga0068861_102589138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	511	Open in IMG/M
3300006048\|Ga0075363_100274929	Not Available	973	Open in IMG/M
3300006051\|Ga0075364_10744822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	668	Open in IMG/M
3300006058\|Ga0075432_10298708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	668	Open in IMG/M
3300006163\|Ga0070715_10471829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	713	Open in IMG/M
3300006353\|Ga0075370_10361365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	868	Open in IMG/M
3300006844\|Ga0075428_100095277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3245	Open in IMG/M
3300006854\|Ga0075425_102104938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	630	Open in IMG/M
3300006953\|Ga0074063_13539477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	791	Open in IMG/M
3300007788\|Ga0099795_10135392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	998	Open in IMG/M
3300009147\|Ga0114129_11900936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	722	Open in IMG/M
3300009553\|Ga0105249_11049993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	884	Open in IMG/M
3300009814\|Ga0105082_1014227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1159	Open in IMG/M
3300010304\|Ga0134088_10311187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	762	Open in IMG/M
3300010336\|Ga0134071_10624599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	565	Open in IMG/M
3300010373\|Ga0134128_12341200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	588	Open in IMG/M
3300010396\|Ga0134126_11382519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	778	Open in IMG/M
3300010400\|Ga0134122_13277724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	508	Open in IMG/M
3300010401\|Ga0134121_11572337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	676	Open in IMG/M
3300010401\|Ga0134121_12035063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	607	Open in IMG/M
3300012199\|Ga0137383_10172994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1582	Open in IMG/M
3300012201\|Ga0137365_10504946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	889	Open in IMG/M
3300012201\|Ga0137365_11253603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	528	Open in IMG/M
3300012206\|Ga0137380_10606305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	957	Open in IMG/M
3300012353\|Ga0137367_10458478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	900	Open in IMG/M
3300012356\|Ga0137371_10262674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1348	Open in IMG/M
3300012360\|Ga0137375_10798665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	759	Open in IMG/M
3300012532\|Ga0137373_10146929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1994	Open in IMG/M
3300012893\|Ga0157284_10087020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 174	791	Open in IMG/M
3300012924\|Ga0137413_10160181	Not Available	1479	Open in IMG/M
3300012927\|Ga0137416_11512504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	610	Open in IMG/M
3300012977\|Ga0134087_10710391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	534	Open in IMG/M
3300012984\|Ga0164309_11642732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	551	Open in IMG/M
3300013100\|Ga0157373_11428152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	527	Open in IMG/M
3300013102\|Ga0157371_11320539	Not Available	558	Open in IMG/M
3300013308\|Ga0157375_11928103	Not Available	701	Open in IMG/M
3300014166\|Ga0134079_10364461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	662	Open in IMG/M
3300014166\|Ga0134079_10511277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	581	Open in IMG/M
3300018072\|Ga0184635_10318954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	604	Open in IMG/M
3300018078\|Ga0184612_10060661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1971	Open in IMG/M
3300018083\|Ga0184628_10107792	All Organisms → cellular organisms → Bacteria → Proteobacteria	1435	Open in IMG/M
3300018433\|Ga0066667_11355431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	623	Open in IMG/M
3300018469\|Ga0190270_11288999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	773	Open in IMG/M
3300019866\|Ga0193756_1033288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 174	727	Open in IMG/M
3300020579\|Ga0210407_10948905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	658	Open in IMG/M
3300020580\|Ga0210403_10996048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	656	Open in IMG/M
3300020581\|Ga0210399_10338658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1256	Open in IMG/M
3300021168\|Ga0210406_10696168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	783	Open in IMG/M
3300021405\|Ga0210387_10134292	All Organisms → cellular organisms → Bacteria → Proteobacteria	2103	Open in IMG/M
3300021478\|Ga0210402_10231746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1703	Open in IMG/M
3300022756\|Ga0222622_10346488	Not Available	1034	Open in IMG/M
3300022880\|Ga0247792_1039651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 174	853	Open in IMG/M
3300025898\|Ga0207692_10049024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2129	Open in IMG/M
3300025900\|Ga0207710_10061685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1702	Open in IMG/M
3300025908\|Ga0207643_10018636	All Organisms → cellular organisms → Bacteria	3801	Open in IMG/M
3300025910\|Ga0207684_10367866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1237	Open in IMG/M
3300025922\|Ga0207646_11891169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509	Open in IMG/M
3300025972\|Ga0207668_11598631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	588	Open in IMG/M
3300026035\|Ga0207703_10082961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2677	Open in IMG/M
3300026041\|Ga0207639_11779375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	577	Open in IMG/M
3300027310\|Ga0207983_1016556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	873	Open in IMG/M
3300027388\|Ga0208995_1028089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 174	981	Open in IMG/M
3300027669\|Ga0208981_1015448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1939	Open in IMG/M
3300027681\|Ga0208991_1106333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	840	Open in IMG/M
3300027909\|Ga0209382_12009522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	554	Open in IMG/M
3300027961\|Ga0209853_1044929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1242	Open in IMG/M
3300028381\|Ga0268264_11928468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	600	Open in IMG/M
3300028592\|Ga0247822_10858638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	743	Open in IMG/M
3300028713\|Ga0307303_10012146	Not Available	1553	Open in IMG/M
3300028744\|Ga0307318_10014923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2489	Open in IMG/M
3300028755\|Ga0307316_10027699	Not Available	1837	Open in IMG/M
3300028810\|Ga0307294_10028771	Not Available	1515	Open in IMG/M
3300028819\|Ga0307296_10278645	Not Available	911	Open in IMG/M
3300028876\|Ga0307286_10086479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1092	Open in IMG/M
3300031152\|Ga0307501_10076819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	803	Open in IMG/M
3300031184\|Ga0307499_10098023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	799	Open in IMG/M
3300031469\|Ga0170819_14905195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	563	Open in IMG/M
3300031740\|Ga0307468_100607646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	894	Open in IMG/M
3300031944\|Ga0310884_10808223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	574	Open in IMG/M
3300032174\|Ga0307470_11152759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	627	Open in IMG/M
3300034113\|Ga0364937_047878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	789	Open in IMG/M
3300034690\|Ga0364923_0007150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2394	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.00%
Host-Associated	Host-Associated	24.07%
Engineered	Engineered	0.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.37%
Plants	Host-Associated → Plants	24.07%
Aquatic	Environmental → Aquatic	4.63%
Solid Waste	Engineered → Solid Waste	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	68.52%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.41%
Sediment	Environmental → Aquatic → Sediment	3.70%
Roots	Host-Associated → Plants → Roots	2.78%
Floodplain	Environmental → Terrestrial → Floodplain	1.85%
Marine	Environmental → Aquatic → Marine	0.93%
Grass	Engineered → Solid Waste → Grass	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.63%
Loam	Environmental → Terrestrial → Soil → Loam	12.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.26%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.41%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.63%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.70%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	2.78%
Sand	Environmental → Terrestrial → Soil → Sand	1.85%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.85%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.93%
Composting	Engineered → Solid Waste → Grass → Composting	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.26%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.33%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.33%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.63%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.70%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.78%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	2.78%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.85%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.85%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.93%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.11%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.19%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.56%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.63%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.63%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.63%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.70%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.78%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	2.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.85%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.85%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.85%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.85%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459019	Litter degradation MG4	Engineered	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300002244	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M1	Host-Associated	Open in IMG/M
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005183	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006048	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3	Host-Associated	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006353	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009814	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019866	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300022880	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027310	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB (SPAdes)	Environmental	Open in IMG/M
3300027388	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027961	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300034113	Sediment microbial communities from East River floodplain, Colorado, United States - 7_s17	Environmental	Open in IMG/M
3300034690	Sediment microbial communities from East River floodplain, Colorado, United States - 60_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_01225060	2088090014	Soil	MFTAQQYRAKAAEFRAFLTNTSRSPNETREFRDLEKTYTTLAENEEWMAVHLNRTALAEEEEQILKCLG
E4A_10554850	2170459003	Grass Soil	MLASEQYRAKAAEFRGFLADKPRSPSEMGEIRTLDRAYTALAENEEWMAVHVDRTFQRRKNRGNRALVEEEEQILKCLGAAARKD
E4A_00409490	2170459003	Grass Soil	MFTAEQYRAKAAEFRAFLTNTPRSPKETREFRDLEQTYTTLAENEEWMAVHIDKTTQRRKNYDNRTALVEE
4MG_02569200	2170459019	Switchgrass, Maize And Mischanthus Litter	MFTAEQYRAKAAEFNAFLANSPRSPNETSEFRNLAQTYTTLAENEEWMAVHLDRTVQRRKPGDDGAVLSEVEEQILKCLGGP
JGI10213J12805_107164332	3300000858	Soil	MFSAEQYRAKAAEFRALLTNIPRSPNETSELRNLEQTYTTLAENEEWMAINIGKTIQRKKDLDNRTSPAEEEEHILRWVGTAAIA*
JGI24742J22300_101166282	3300002244	Corn, Switchgrass And Miscanthus Rhizosphere	MFTAEQYRAKAAEFNALLANTPRSPNETSEFRKLAQTYTTLAENEEWMAVHLDRTIQRRKHGDDGAALPEVEEQ
Ga0058897_110802423	3300004139	Forest Soil	MFTAEQYRAKAAEFSAFLANTPRSPNETREFRHLERVYTRLAENEEWMAVNIDKTIQRRKNDDNRTALADEEEQILKC
Ga0062589_1023553321	3300004156	Soil	MFTAEQYRAKAAEFNALLANTPRSPSETNELRNLAQVYTTLAENEEWMAVHVDKTVRRKKHDEAGAGIAEVQEQIL*
Ga0062595_1011400931	3300004479	Soil	MFSAEQYRAKAAEFRTLLANMPCSQNETREFRGLEQTYTTLAENEEWMAINIDKTIRRRKNRNDPASLDEEEEQVLRCARPGRGHAAE*
Ga0066869_101447582	3300005165	Soil	MFTAEQYRAKAAEFNALLANTPRSPNETSEFRKLAQTYTTLAENEEWMAVHLDRTVQRRKHGDDSAA
Ga0066690_103922431	3300005177	Soil	MFTAELYRAKAAEFRTFLANTPRSPNETREFRHLERIYTRLAENEEWMAVIDKTIQRGKNYDNRTALADEEEQILKCLGAAV
Ga0068993_102922081	3300005183	Natural And Restored Wetlands	QMFSAEQYRSKAAEFKALLTNTPRSPNETSELRDLERTYTTLAENEEWMATNIDKTIQRQKDRDNKTARFQEEEQILKCLGRPSS*
Ga0066671_107915701	3300005184	Soil	MFTADQFRAKAAEFRALLTNVARSPNETREFRDLEQTYTTLAENEEWMAVHIDKTIQRRKNYDNRTALAEEEAQILKCL
Ga0070690_1011412541	3300005330	Switchgrass Rhizosphere	EFNALLANTPRSPNETSEFRKLAQTYTTLAENEEWMAVHLDRTIQRRKHGDDGAALPEVESKS*
Ga0070670_1000696225	3300005331	Switchgrass Rhizosphere	MFTAEQYRAKAAEFNALLANTPRSPNETSEFRKLAQTYTTLAENEEWMAVHLDRTIQRRKHGDDGAALPEVESKS*
Ga0070710_102347331	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MFTAEQYRAKAAEFRARLTDTLRSPNETKEFRDLEQTYTKLAENEEWMAVNIDKTIQPGENDNSAALVEEDEQILKCLGAA
Ga0070711_1009438521	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VLPPAVERACQMFTAEQFRAKAAEFRALLTNTARSPNETREFRDLEQTYTTLAENEEWMAVHIDKTIQRGKNYDNRTALA
Ga0070711_1014379281	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MFTAEQYRAKAAEFRARLTNTPRSPNETREFRVLEQTYTKLAENEEWMAVNIDKTIQPGENDNSAALVEEDEQILKCLGAA
Ga0066681_105839983	3300005451	Soil	MFTAEQYRAKAAEFRAFLANTPRSPNETREFRHLERIYTTLAENEEWMAVHIDKTIQRRENYDNRAALADDE
Ga0070663_1002212512	3300005455	Corn Rhizosphere	MFTAEQYRAKAAEFNAFLANTPRSPNETSEFRKLAQTYTTLTDSEAWMAVHLDRTVQRRKHGDDGA
Ga0070663_1015664391	3300005455	Corn Rhizosphere	MFTAEQYRAKAAEFNALLANTPSSLTETNELRNLAQVYTTLAENEEWMAVHVDKTVRRKKHDEARAGIAEVREQIL*
Ga0070665_1020011871	3300005548	Switchgrass Rhizosphere	MFTAEQYRAKAAEFNALLANTPRSPNETSEFRKLAQTYTTLAENEEWMAVHLDRTIQRRKHGDDGAALPEVE
Ga0066701_104546211	3300005552	Soil	VLPPAMERAREMSSAEQYRAKAAEFRALLTNTPRSPKETSEFRDLEQAYTTLAENEEWMAGHIDKTIQRRKNYDNRTALV
Ga0070702_1006783242	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	ALLANSPRSPSETNELRNLAQVYTTLAENEEWMAVHVDKTVRRKKHDEAGAGIAEVQEQIL*
Ga0068852_1001504021	3300005616	Corn Rhizosphere	MFTAEQYRAKAAEFNALLANTPRSPNETSEFRKLAQTYTTLAENEEWMAVHLDRTIQRRKHGDDGAALPEVESK
Ga0068864_1008430152	3300005618	Switchgrass Rhizosphere	MFTAEQYRAKAAEFNALLANTPRSPSETNELRNLAQVYTTLAENEEWMAVHVDKTVRRKKHDEARAGIAEVREQIL*
Ga0068861_1025891382	3300005719	Switchgrass Rhizosphere	MFTAEQYRAKAAEFRARLTDTLRSPNETKEFRDLEQTYTKLAENEEWMAVNIDKTIQPGENDNSAALVEEDEQILKCLGA
Ga0075363_1002749292	3300006048	Populus Endosphere	VFTCEQYRAKAAEFNAFLANTPRSPNETSEFRNLAQTYTTLAENEEWMAVHLDRTVQRRKHGDDGAALAEVGVAPV*
Ga0075364_107448222	3300006051	Populus Endosphere	MFTAEQYRAKAAEFNAFLANSPRSPNETSEFRNLAQTYTTLAENEEWMAVHLDRTVQRRKPGDDGAVLS
Ga0075432_102987083	3300006058	Populus Rhizosphere	VLPPAVERACQMFTAEQYRAKAAEFRAFLTNTPRSPKETREFRDLEQTYTTLAENEEWMAVHIDKTTQGRKNYDNRTALVEEEEQIL
Ga0070715_104718292	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	VLPPAVERAHQMFTAEQFRAKAAEFRALLTNIARSPNETREFRDLEQTYTTLAENEEWMAVHLDKTIQQRKNIENRSALAEEEEQILK
Ga0075370_103613651	3300006353	Populus Endosphere	LEGTCQMFTAEQYRAKAAEFNALLANTPRSPSETNELRNLAQVYTTLAENEEWMAVHVDKTVRRKKHDEAGAGIAEVQEQIL*
Ga0075428_1000952771	3300006844	Populus Rhizosphere	MFTSQQYRAKAAAFRAFLANPSRSPDQTKEFRRLEQTYTTLAENEEWMVLNIDKTIQRSKIRDNHTGPLRRKRKSRS*
Ga0075425_1021049381	3300006854	Populus Rhizosphere	LILRTAQVGLRGAMSGFRALLTNTPRSPNETREFHDLEQTYTRLAENEEWTAVDIEENDNSAALVEEEEQILKCL
Ga0074063_135394771	3300006953	Soil	MFTAEQYRAKAAEFNAFLANTPRSPNETSEFRNLAQTYTTLAENEEWMAVHLDRTVQRRKHGDDSAALAEVEEQIL*
Ga0099795_101353921	3300007788	Vadose Zone Soil	MFTAEQYRAKAAEFRAFLTNTPRSPKETREFRDLEQTYTTLAENEEWMAVHIDKTTQRRKNYDNRTALVEEEEQILKCL
Ga0114129_119009362	3300009147	Populus Rhizosphere	MFTAEQYRAKAAEFTAFLTNIPRSPNETREFRDLERTYATLAENEEWMAVHIDKTIQRRKNYDNRTALVEEE
Ga0105249_110499932	3300009553	Switchgrass Rhizosphere	MFTAQQYRAKAAEFRAFLTNTSRSPNETREFRDLEKTYTTLAENEEWMAVHLDKAIQQRKNIENRSALA
Ga0105082_10142271	3300009814	Groundwater Sand	MVTSEQYRAKAAECSAILTATPHSPKEASELRNLEQSYKALAENEEWMAVNLDKTIRRKNRDNHTALEEEQVLKCLERP*
Ga0134088_103111871	3300010304	Grasslands Soil	QYRAKAAEFRASLTNTPRSPNETREFLDLEQTYTTLAENEEWMAVHLDKTIQRRKNSENRCRSRKFHPRGFAR*
Ga0134071_106245991	3300010336	Grasslands Soil	MFTAQQYRAKAAEFRAFLTNTPRSPKETSEFRDLEQTYTTLAENEEWMAGNRDKVIQRRKNYDHRTVLAEEE
Ga0134128_123412001	3300010373	Terrestrial Soil	MFTAEQYRAKAAEFNALLANTPRSPSETNELRNLAQVYTALAENEEWMAVHVDKTVGRKKHDEAGAGIAEAQEQIL*
Ga0134126_113825191	3300010396	Terrestrial Soil	MFTAEQYRAKAAEFNALLANTPRSPSETNELRNLAQVYTALAENEEWMAVHVDKTVRRKKHDEAGAGIAEVQEQIL*
Ga0134122_132777241	3300010400	Terrestrial Soil	MFTAEQYRAKAAEFNALLANTPRSPNETSEFRKLAQTYTTLAENEEWMAVHLDRTVQRRKPGDDGAVLSEVEEQI
Ga0134121_115723371	3300010401	Terrestrial Soil	MFTAEQYRAKAAEFNALLANTPRSPNETSEFRKLAQTYTTLAENEEWMAVHLDRTVQRRKPADDGAVLSEVEEQILRCLGG
Ga0134121_120350631	3300010401	Terrestrial Soil	MFTAEQYRAKAAEFNAFLANTPRSPNETSEFRNLAQTYTTLAENEEWMAVHLDRTVQRRKHGDDSAALLEVEEQIL*
Ga0137383_101729943	3300012199	Vadose Zone Soil	MFTTEQYRAKAAEFKAFLTNIPLSPNETREFCDLEQFYTTLAENEEWMGVHIDRTVQRRKNYDNRTALVEEEDQILKCLG
Ga0137365_105049461	3300012201	Vadose Zone Soil	MFTAEQYRAKAAEFRTFLTNTPRSPNETREFRDLEQTYTTLSENEEWMAVHIDKTIQRRKNYDNRAALAEEEEQI
Ga0137365_112536031	3300012201	Vadose Zone Soil	MFTAEQYRAKAAEFRAFLTNTPRSPKETREFRDLEQTYTTLAENEEWMAVHIDKTTQRRKNYDNRTA
Ga0137380_106063051	3300012206	Vadose Zone Soil	MFTAEQYRAKAAEFRAFLANTPRSPNETREFRHLERIYTTLAENEEWMAVHIDKTIQRGENDDNRAALADEEEQI
Ga0137367_104584782	3300012353	Vadose Zone Soil	MFTAEQYRAKAAEFRAFLTNTPRSPKETREFRDLEQTYTTLAENEEWMAVHIDKTTQRRKNYDNRTALVEEEE
Ga0137371_102626744	3300012356	Vadose Zone Soil	MFTAEQYRAKAAEFRTFLTNTPRSPNETREFRDLEQTYTTLSENEEWMAVHIDKTIQRRKNYDNRAALAE
Ga0137375_107986652	3300012360	Vadose Zone Soil	MFTAEQYRAKAAEFRAFLTNTPRSPKETREFRDLEQTYTTLAENEEWMAVHIDKTTQRRKNYDNRTALVEEEEQILK
Ga0137373_101469291	3300012532	Vadose Zone Soil	MFTAEQYRAKAAEFRALLTNTPRSPNETKEFRDLDQTYTRLAENEEWMAVHIDRTVQRRKNYDNRTAR*
Ga0157284_100870201	3300012893	Soil	MFTAEQYRAKAAEFNAFLANSPRSPNETSEFRNLAQTYTTLAENEEWMAVHLDRTVQRRKPGDDGAVLSEVEEQILKCL
Ga0137413_101601811	3300012924	Vadose Zone Soil	MFTAEQYRVKAAEFNALLANTPRSPNETSEFRNLAQTYTTLAENEDWIAVHLDRTVQRRKHGNEGAALAEV
Ga0137416_115125041	3300012927	Vadose Zone Soil	MFSAEQYRAKAAEYREMLTNIPRSTNETNEFRNLEQTYTTLAENEEWMAINVDRTVHRRKNRDSRTDLDEEEEEIFR
Ga0134087_107103911	3300012977	Grasslands Soil	MFTAERFRAKAAEFRALLTSIARSPNETREFLDLEQTYTTLAENEEWMAAHIDKTIQRRKNYDNRTALAEEEEQ
Ga0164309_116427321	3300012984	Soil	MFTAEQYRATAAEFNALLANTPRSPNETSEFRNLAQTYTTLAENEEWMAVHLDRTVQRRKHGDDSAALAEVEEQIL*
Ga0157373_114281521	3300013100	Corn Rhizosphere	VFTCEQYRAKAAEFNAFLANTPRSPNETSEFRKLAQTYTTLTDSEAWMAVHLDRTVQRRKHGDDGA*
Ga0157371_113205391	3300013102	Corn Rhizosphere	MFTAEQYRAKAAEFNAFLANTPRSPNETSEFRKLAQTYTTLTDSEAWMAVHLDRTIQRRKHGDDGA*
Ga0157375_119281031	3300013308	Miscanthus Rhizosphere	MFTAEQYRAKAAEFNALLANTPSSLTETNELRNLAQVYTTMAENEEWMAVHVDKTVRRKKHDEAGAGIAEVQEQIL*
Ga0134079_103644611	3300014166	Grasslands Soil	MFAAERFRAKAAEFRALLTSIARSPNETREFLDLEQTYTTLAENEEWMAVHVDKMIQRRKNYDNRDALAEEEKQILKCLGAA
Ga0134079_105112772	3300014166	Grasslands Soil	MFTAEQFRAKAAEFRALLTNTGRSPNETREFRDLEQTYTTLAENEEWMEVHTDKMIPRRKNYDNRTALAEEEE*
Ga0184635_103189542	3300018072	Groundwater Sediment	MFSAEQYRAKATEFRALLAITPRSPSETSELRNLEQTYTTLAENEDWMAANIDKTVQCGKNRDNRTVLAEEESAR
Ga0184612_100606611	3300018078	Groundwater Sediment	MFTSEQYRAKAAECRAILTDTPHSPKESSELRNLEQSYKVLAENEEWMAVNLDKTIRRKNRDNHTALEEEQVLKCLERP
Ga0184628_101077921	3300018083	Groundwater Sediment	MFTAEQYRVKAAEFNALLANTPRSPNETSEFRNLAQTYTTLAENEDWMAVHLDRTVQRRKHTNPGRAFLCG
Ga0066667_113554311	3300018433	Grasslands Soil	VLPPAVERACQMFTADQFRAKAAEFRALVTNIARSPNETREFRDLEQTYTTLAENEEWMAVHIDKTIQRRKNYDNRTALAEEEAQILTCLG
Ga0190270_112889992	3300018469	Soil	MFTAEQYRAKAAEFNALLANTPRSPNETSEFRKLAQTYTTLAENEEWMAVHLDRTVQRRKHGDDSAALPEVEEQIL
Ga0193756_10332882	3300019866	Soil	MFTAEQYRVKAAEFNALLANTPRSPNETSEFRNLAQTYTTLAENEDWIAVHLDRTVQRRKHGNERAALAEVEEQIL
Ga0210407_109489052	3300020579	Soil	LCSGPPEIRACQMFTAEQYRAKAAEFRALLTNTPRSPNETREFRDLEQTYTRLAENEEWTAVNNDKTIQPRENDNSAALVEEE
Ga0210403_109960481	3300020580	Soil	MFTAEQYRTKCERGLLVSNALNSAALNETREFRDLEQTYTTLAENEEWMAANVDKAIQRIKNYDNRLPLLRKKSKF
Ga0210399_103386582	3300020581	Soil	VIPPAVERACQMFTAEQYRAKAAEFRAFLTNTPRSPKETREFRDLEQTYTTLAENEEWMAVHIDKTTQRRKNYDNRTALVEEEEQKF
Ga0210406_106961682	3300021168	Soil	MFTAEQYRAKAAEFRALLTNRPRSPNETKEFRDLEQTYTTLAENEEWMAVNVDKAIQRRKNHDNSAA
Ga0210387_101342921	3300021405	Soil	MVTWHTQSICQMFTAEQYRAKAAEFRALLTNRPRSPNETKEFRDLEQTYTTLAENEEWMAVNVDKAIQRRKNHDNSAALVE
Ga0210402_102317461	3300021478	Soil	MHTAQQYRAKAAEFRALLADAVRSPAELRELRGLEQTYTTLAENEEWMEVHVGDTVQRRSTVDNPAALAEKEEQALGPGDVG
Ga0222622_103464881	3300022756	Groundwater Sediment	MFTAEQYRAKAAEFNAFLANTPRLPNETSEFRNLAQTYTTLAENEEWMAVHLDRTVQRRKHGDDGVALAEVEDASL
Ga0247792_10396511	3300022880	Soil	MFTAEQYRAKAAEFNALLANTPRSPSETNELRNLAQVYTTLAENEEWMAVHVDKTVRRKKHDEAGAGIAEVQ
Ga0207692_100490245	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MSGFRALLTNTPRSPNETREFHDLEQTYTRLAENEEWTAVDIEENDNSAALVEEEEQILKCLGAAVLM
Ga0207710_100616852	3300025900	Switchgrass Rhizosphere	MFTAEQYRAKAAEFNALLANTPRSPNETSEFRKLAQTYTTLAENEEWMAVHLDRTIQRRKHGDDGAALPEVESKS
Ga0207643_100186361	3300025908	Miscanthus Rhizosphere	AEFNALLANTPRSPNETSEFRKLAQTYTTLAENEEWMAVHLDRTIQRRKHGDDGAALPEVEEQILRCLGAAVIQKE
Ga0207684_103678665	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MFTAEQYRAKAAEFRAFLANTPRSPNETREFRHLERIYTTLAENEEWMAVHIDKTIQRGKNYDNRTTLADEE
Ga0207646_118911691	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VLPLATERACQMFTAEQYRAKAAEFRAFLTNTSRLPNETSEFRDLEQTYTTLAENEAWMAVHLDKTIQRTALAEEEDQILKCLGAAVLM
Ga0207668_115986312	3300025972	Switchgrass Rhizosphere	MFTAEQYRAKAAEFNALLANTPRSPNETSEFRKLAQTYTTLAENEEWMAVHLDRTIQRRKHGDDGAALPEVES
Ga0207703_100829615	3300026035	Switchgrass Rhizosphere	MFTAEQYRAKAAEFNALLANTPRSPNETSEFRKLAQTYTTLAENEEWMAVHLDRTIQRRKHGDDGAAP
Ga0207639_117793751	3300026041	Corn Rhizosphere	MFTAEQYRAKAAEFNALLANSPRSPSETNELRNLAQVYTTLAENEEWMAVHVDKTVRRKKHDEAGAGIAEVQEQIL
Ga0207983_10165562	3300027310	Soil	EFNALLANTPRSPNETSEFRKLAQTYTTLAENEEWMAVHLDRTIQRRKHGDDGAALPEVEEQILRCLGAAVIQKE
Ga0208995_10280891	3300027388	Forest Soil	MFSAEQYRTKAAEYRALLSNIPRSPHETSEFRNLEQTYTTLAENEEWMAINIDKTIQRRKYRDDRIGLDEGEEQILRC
Ga0208981_10154481	3300027669	Forest Soil	MFSAEQYRTKAAEYRALLSNIPRSPHETSEFRNLEQTYTTLAENEEWMAINIDKTIQRRKYRDNRIGLDEGEEQILRCVGD
Ga0208991_11063331	3300027681	Forest Soil	MFSAEQYRAKAAEFRTLLTNMRRSPNETSEFRNLEQTYTTLAENEEWMAINIDKTIQQREDLDNRTSPAEEEQLIL
Ga0209382_120095221	3300027909	Populus Rhizosphere	MFSAEQYRAKAAEFRALLTITPRSPSETSELRNLEQTYTTLAENQEWMAANIDKTVQRRKNRDNHTAPAEEESAKFEAPG
Ga0209853_10449292	3300027961	Groundwater Sand	MVTSEQYRAKAAEFGAILAATPHSPKETSELRNLEQSYKALAENEEWMAVNLDKAIRRKNRDNHTALEEEQVLKCLERP
Ga0268264_119284681	3300028381	Switchgrass Rhizosphere	MFTAEQYRAKAAEFNALLANTPRSPNETSEFRKLAQTYTTLAENEEWMAVHLDRTIQRRKHGDDGAALPEGKS
Ga0247822_108586382	3300028592	Soil	MFTAEQYRAKAAEFNAFLANSPRSPNETSEFRNLAQTYTTLAENEEWMAVHLDRTVQRRKPGDDGAVLSE
Ga0307303_100121461	3300028713	Soil	MFTAEQYRVKAAEFNALLANTPRSPNETSEFRNLAQTYTTLAENEDWIAVHLDRTVQRRKHGNEGAALAEVEEQILRCLGT
Ga0307318_100149235	3300028744	Soil	MFTAEQYRVKAAEFNALLANTPRSPNETSEFRNLAQTYTTLAENEDWIAVHLDRTVQRRKHGNEGAALAEVEEQILRCLGTA
Ga0307316_100276992	3300028755	Soil	MFTAEQYRAKAAEFNAFLANTPRLPNETSEFRNLAQTYTTLAENEEWMAVHLDRTVQRRKYGDDGAA
Ga0307294_100287711	3300028810	Soil	MFAAEQNRAKAAEFNAFLADASHSANETSEFRNLAQTYTTLAENEEWMAVHLDRTVQRRKYGDDGAALAEVE
Ga0307296_102786451	3300028819	Soil	MFAAEQNRAKAAEFNAFLADASHSANETSEFRNLAQTYTTLAENEEWMAVHLDRTVQRRKHGDDGVALAEVE
Ga0307286_100864792	3300028876	Soil	MKAAEYTALLSNIPRSPHETSELRNLEQTYTTLAENEEWMAINIDKTIQQREDDLDNRTGPAEKEEHILKWVGTAAIA
Ga0307501_100768191	3300031152	Soil	MFSAEQYRAKAAEFRTLLTDIQRSPNETREFRNLEQTYTTLAENEEWMAINIDKTIQQREDLDNRTGPAEKEEHILKWVRTAAIA
Ga0307499_100980232	3300031184	Soil	MFTAEQYRVKAAEFNALLANTPRSPNETSEFRNLAQTYTTLAENEDWIAVHLDRTVQRRKHGNEGAALAEVEEQI
Ga0170819_149051951	3300031469	Forest Soil	MFTAEQYRVKAAEFNALLANTPRSPNETSEFRNLAQTYTTLAENEDWIAVHLDRTVQRRKHGNEGAALAEVEEQILRC
Ga0307468_1006076461	3300031740	Hardwood Forest Soil	MFTAEQYRAKAAEFRARLTDTLRSPNETKEFRDLEQTYTKLAENEEWMAVNIDKTIQPGENDNSAALVEEEEQILKC
Ga0310884_108082231	3300031944	Soil	MFTAEQYRAKAAEFNAFLANSPRSPNETSEFRNLAQTYTTLAENEEWMAVHLDRTVQRRKPGDDGAVLSEVEEQILKCLGGAVMMRW
Ga0307470_111527592	3300032174	Hardwood Forest Soil	MFTAEQYRAKAAEFRAFLANTPRSPNETSELRNLEQTYTTLAENEEWMAVHVDRTIQRRKDRDNRAIAEEEKILRCQGAAARKD
Ga0364937_047878_106_354	3300034113	Sediment	MFSAEQYRSKAAEFRTLLTNLPRSAKETSEFRNLEQTYTTLAENEEWMTNNIGMTIRRRKNRDNRTGLEQEEEQVLRCRGTQ
Ga0364923_0007150_2_247	3300034690	Sediment	MFSAEQYRSKAAEFRTLLTNLPRSAKETSEFNLEQTYTTLAENEEWMTSNIGMTIRRRKNRDNRTGLEQEEEQVLRCRGTQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090921

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences