Metagenome / Metatranscriptome Family F090910

Overview

Basic Information

• Family ID: F090910
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 108
• Average Sequence Length: 45 residues
• Representative Sequence: GAFEGDGVLRFADSVSGSYNFITALPVSRLAVFLREQGVEV
• Number of Associated Samples: 100
• Number of Associated Scaffolds: 108

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 4.63 %
• % of genes near scaffold ends (potentially truncated): 87.04 %
• % of genes from short scaffolds (< 2000 bps): 85.19 %
• Associated GOLD sequencing projects: 94
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (87.963 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (18.518 % of family members)
• Environment Ontology (ENVO): Unclassified (26.852 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (55.556 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 36.23%
  β-sheet: 2.90%
  Coil/Unstructured: 60.87%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF07478	Dala_Dala_lig_C	12.96
PF00962	A_deaminase	4.63
PF01261	AP_endonuc_2	4.63
PF00873	ACR_tran	3.70
PF02545	Maf	3.70
PF00903	Glyoxalase	3.70
PF03544	TonB_C	2.78
PF01569	PAP2	1.85
PF01494	FAD_binding_3	1.85
PF03477	ATP-cone	1.85

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG1816	Adenosine/6-amino-6-deoxyfutalosine deaminase	Nucleotide transport and metabolism [F]	4.63
COG0424	7-methyl-GTP pyrophosphatase and related NTP pyrophosphatases, Maf/HAM1 superfamily	Secondary metabolites biosynthesis, transport and catabolism [Q]	3.70
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	3.70
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	2.78
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	1.85
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	1.85
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	1.85
COG0142	Geranylgeranyl pyrophosphate synthase	Coenzyme transport and metabolism [H]	0.93
COG0266	Formamidopyrimidine-DNA glycosylase	Replication, recombination and repair [L]	0.93
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	0.93

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.89 %
Unclassified	root	N/A	11.11 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.89 %
Unclassified	root	N/A	11.11 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.96 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.93 %
Unclassified	root	N/A	11.11 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	55.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.85 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	6.48 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	0.93 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.78 %
Unclassified	root	N/A	11.11 %

Level 5

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	8.33 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.93 %
Unclassified	root	N/A	11.11 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	11.11 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5.56 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.11 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	7.41 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.78 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.93 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	0.93 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	0.93 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.93 %
Unclassified	root	N/A	11.11 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.93 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	5.56 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.11 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7.41 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.78 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	0.93 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.93 %
Enterobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	0.93 %
Planctomycetes bacterium Pan216	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan216	0.93 %
Suessiales	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	0.93 %
Unclassified	root	N/A	11.11 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	5.56 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.11 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.78 %
Asticcacaulis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Asticcacaulis	0.93 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2.78 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	0.93 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.93 %
Planctomycetes bacterium Pan216	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan216	0.93 %
Salmonella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Salmonella	0.93 %
Symbiodiniaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae	0.93 %
Unclassified	root	N/A	11.11 %
unclassified Bryobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae	0.93 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	5.56 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.11 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.78 %
Asticcacaulis endophyticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Asticcacaulis → Asticcacaulis endophyticus	0.93 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.93 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.85 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.93 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.93 %
Planctomycetes bacterium Pan216	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan216	0.93 %
Salmonella enterica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Salmonella → Salmonella enterica	0.93 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	0.93 %
Unclassified	root	N/A	11.11 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	5.56 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.11 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.78 %
Asticcacaulis endophyticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Asticcacaulis → Asticcacaulis endophyticus	0.93 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.93 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.85 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.93 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.93 %
Planctomycetes bacterium Pan216	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan216	0.93 %
Salmonella enterica subsp. enterica	subspecies	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Salmonella → Salmonella enterica → Salmonella enterica subsp. enterica	0.93 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	0.93 %
Unclassified	root	N/A	11.11 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	5.56 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300004091|Ga0062387_101223983	All Organisms → cellular organisms → Bacteria → Acidobacteria	589
3300005332|Ga0066388_101170371	All Organisms → cellular organisms → Bacteria	1311
3300005334|Ga0068869_102105617	All Organisms → cellular organisms → Bacteria → Acidobacteria	507
3300005338|Ga0068868_101394819	All Organisms → cellular organisms → Bacteria → Acidobacteria	653
3300005439|Ga0070711_100923312	Not Available	746
3300005545|Ga0070695_100445781	All Organisms → cellular organisms → Bacteria	991
3300005561|Ga0066699_10322932	All Organisms → cellular organisms → Bacteria	1101
3300005598|Ga0066706_11058243	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	622
3300005764|Ga0066903_101011249	All Organisms → cellular organisms → Bacteria	1521
3300006028|Ga0070717_10104977	All Organisms → cellular organisms → Bacteria → Acidobacteria	2404

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.52%
Host-Associated	Host-Associated	6.48%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	10.19%
Plants	Host-Associated → Plants	6.48%
Terrestrial	Environmental → Terrestrial	83.33%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	5.56%
Peat	Environmental → Terrestrial → Peat	0.93%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.63%
Sediment	Environmental → Aquatic → Sediment	4.63%
Soil	Environmental → Terrestrial → Soil	81.48%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.85%
Loam	Environmental → Terrestrial → Soil → Loam	11.11%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.70%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.93%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.56%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.70%

Subtype

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.41%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	31.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.70%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.33%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.70%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.63%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.70%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.85%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.93%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.85%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.85%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.85%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.85%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.56%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.63%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062387_1012239831	3300004091	Bog Forest Soil	YVNKYDVLNYAGAFENDAVLLFADRIAGSYNLGTALPPSRLLVLLREQGVEV*
Ga0066388_1011703713	3300005332	Tropical Forest Soil	FAGAFEDEAVLKFADRVSGAPNIGTAMPVSRLTFMLRELGAEI*
Ga0068869_1021056171	3300005334	Miscanthus Rhizosphere	GAFEGDGVLRFAESVSGSFNFMTGVPVSRLAVFLREQGVAV*
Ga0068868_1013948192	3300005338	Miscanthus Rhizosphere	VLSYAGAFESDVVLRFAERISGSYNFITALPVSVFVREQGVDT*
Ga0070711_1009233122	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	GAFEDDAVLKFADRVSGSPNIGTAMPVSRLTLMLREVGVEI*
Ga0070695_1004457811	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	VLSYAGAFESDVVLRFAERISGSHNFITALPVSVFVREQGVDT*
Ga0066699_103229321	3300005561	Soil	LEREIQEYISKYAVLSYASVLESDAVLRFAERISGSYNFVTAIPVSRLIVFLREPAVEI*
Ga0066706_110582431	3300005598	Soil	EDDAVLKFADRVSGSPNIGTAMPVSRLTLMLREQGVEV*
Ga0066903_1010112493	3300005764	Tropical Forest Soil	GVLRFAEQISGSYNFIFALPVSRLIVFLRDQGVQV*
Ga0070717_101049771	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	DVLSYAGAFENDAVMLFADRITGSYNLGTALPPSRLIVLLREQGVEV*
Ga0075029_1000221423	3300006052	Watersheds	MDLSKYDVLNYAGAFEHDAILLFADQIRGSYNLGTALPPSRLLVLLREQGVEV*
Ga0075029_1003275241	3300006052	Watersheds	AGAFENDAVLLFADRISGSYNLGTALPPSRLIVLLREQGVEV*
Ga0070715_106920602	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	LGLHDCVRRYPVLRYAGALEGDSVLRFADSVSGSYNFVTAMPVSRLAVFLREQGVEV*
Ga0075018_105047261	3300006172	Watersheds	LHDCVRRYPVLGYAGALEGDSVLRFADSVSGSYNFVTAMPVSRLAFFLREQGVEV*
Ga0066658_100151722	3300006794	Soil	AVLRFAERISGSYNFVTAIPVSRLIVFLREPAVEI*
Ga0066659_109418302	3300006797	Soil	GAFEGDGVLRFADSVSGSYNFITALPVSRLAVFLREQGVEV*
Ga0066660_102275672	3300006800	Soil	VLSYAGVFESDAVLRFAERISGSYNFVTAIPVSRLIVFLREPAVEI*
Ga0079221_111043841	3300006804	Agricultural Soil	NDAVLLFADRIAGSYNLGTALPPSRLIVLLREQGVQV*
Ga0066710_1020890021	3300009012	Grasslands Soil	NYAGAFESDAVLFFADRISGSYNFVTALPVSRLIVFLRAQGVAV
Ga0105240_126941931	3300009093	Corn Rhizosphere	VLRFAESVSGSFNFMTGVPVSRLAVFLREQGVAV*
Ga0075423_129930101	3300009162	Populus Rhizosphere	FEGDGVLRFAESVSGSLNFMTGVPVSRLAVFLREQGVAV*
Ga0126374_110547232	3300009792	Tropical Forest Soil	AYPVKNFAGAFEDDAVLKFADRVSGSPNIGTAMPVSRLTLMLRELGVDV*
Ga0126373_120536892	3300010048	Tropical Forest Soil	YAGAFENDAVMLFADRIAGSYNLGTALPPSRLIVLLREQGVEV*
Ga0126370_100541641	3300010358	Tropical Forest Soil	GVLRFAESVSGSFNFITGLPVSRLAVFLREQGVEV*
Ga0126376_132630722	3300010359	Tropical Forest Soil	FESDAVLRFADRISGSYNFVTALPVSRLIVFLRAQGVAI*
Ga0126372_113399561	3300010360	Tropical Forest Soil	RYDVLSYAGAFENDAVLLFADRIAGSYNLGTALPPSRLVVMLREQGVQV*
Ga0126378_115369781	3300010361	Tropical Forest Soil	AVLKFAERIAGSYNFVTALPVSLLIVFLREQGAGL*
Ga0126378_134534692	3300010361	Tropical Forest Soil	VLRCAGGFEGDGVLRFAERISGSYNFLTAVPVSRLIVFLREQGVAI*
Ga0126379_100439341	3300010366	Tropical Forest Soil	ENDAVMLFAERISGSYNLGTALPPSRLIVLLREQGVEV*
Ga0126381_1007201572	3300010376	Tropical Forest Soil	ENYINRYDVLRYAGAFENDAVLLFADRISGSYNLGTALPPSRLIVLLREQGVAV*
Ga0126381_1007644101	3300010376	Tropical Forest Soil	FESDAVLRFAERISGSYNFMTALPVSRLIVFLRAQGVET*
Ga0126381_1038014832	3300010376	Tropical Forest Soil	AFESDAALFFADRISGSYNFVTALPVSRLIVFLRAQGVEI*
Ga0136449_1006858921	3300010379	Peatlands Soil	DAVLLFADRIAGSYNLGTALPPSRLIVLLREQGVEV*
Ga0126383_100276674	3300010398	Tropical Forest Soil	AFENDAVLLFADRIAGSYNLGTALPPSKLIVLLREQGVEV*
Ga0150983_158543651	3300011120	Forest Soil	LRFAGAFEGDGVLRFADSVSGSYNFITALPVSRLAVFLREQGVEV*
Ga0137391_107691172	3300011270	Vadose Zone Soil	VLSYAGAFESDAVLRFAERISGSYNFVTALPVSRLIVFLRAQGIDI*
Ga0137388_110124831	3300012189	Vadose Zone Soil	VRRYPVLRFAGAFEGDGVLRFADSVSGSYNFITALPVSRLAVFLREQGVEL*
Ga0137404_110362442	3300012929	Vadose Zone Soil	YIFFRPFFDREIQLNISKYDVLNYAGAFENDAVLLFADRIAGSYNLGTALPPSRLIVLLREQGVEV*
Ga0137407_102832283	3300012930	Vadose Zone Soil	SYAGAFESDAVLRFAERISGSYNFVTALPVSRLIVFLRAQGIDI*
Ga0126375_100362723	3300012948	Tropical Forest Soil	MNFAGAFESDAVLRFADRISGSYNFVTALPVSRLIVFLRAQGVEI*
Ga0126369_122338671	3300012971	Tropical Forest Soil	NYAVLNYAGAFESDAVLKFAETVSGAVNIGTALPVSRLTVMLRQQGVEV*
Ga0157374_106497881	3300013296	Miscanthus Rhizosphere	RDYVMRYPVLQFAGAFEGDGVLRFAESVSGSFNFMTGVPVSRLAVFLREQGVAV*
Ga0157374_121336441	3300013296	Miscanthus Rhizosphere	NDAVLLFADRITGSYNLGTALPPSRLIVLLREQGVEV*
Ga0182036_107391471	3300016270	Soil	YDVLSYAGAFENDAVMLFAERISGSYNLGTALPPSRLIVLLREQGVEV
Ga0182041_117031292	3300016294	Soil	LRYAGAIEGDGVLRFADAVSASYNFITAMPVSRLAVFLREQGVELDDSIRQ
Ga0182039_107274701	3300016422	Soil	QYPVLSFAGAFESDAVLRFADRISGSYNFVTAIPISRLTMFLRQQGVEV
Ga0187824_102264832	3300017927	Freshwater Sediment	FEDEAVALFSNRIAGSYNLGTALPPSRLIVLLREQGVEI
Ga0187801_100184331	3300017933	Freshwater Sediment	YPVTNFAGAFEGDGVLRFAERVSGSYNFIAALPVSRLALFLRELGVAV
Ga0187801_105109261	3300017933	Freshwater Sediment	GVLRFADSVSGSYNFITALPVSRLAVFLREQGIEV
Ga0187819_108378981	3300017943	Freshwater Sediment	FEGDAVLKFAERITGSYNFVTALPVSRLIVFLRAQGVEI
Ga0187766_112528272	3300018058	Tropical Peatland	NFAGAFENDAVYMFAERISGSYNIGTALPVSRLILFLREQGIEI
Ga0187784_101400611	3300018062	Tropical Peatland	NFAGAFEGDGVLRFAERVSGSYNFITALPVSRLAVFLRDLGFEL
Ga0066662_116411843	3300018468	Grasslands Soil	VLSYAGVFESDAVLRFAERISGSYNFVTAIPVSRLIVFLREPAVEI
Ga0193722_10484192	3300019877	Soil	DYAGEFESDAVLKFAERVSGAVNIGTALPVSRLIVMLREQGVEV
Ga0179594_101767532	3300020170	Vadose Zone Soil	LSYAGAFESDAVLRFAERISGSYNFVTALPVSRLIVFLRAQGIDI
Ga0210407_102850403	3300020579	Soil	RSFRRHGVLRFADSVSGSYNFFTALPVSRLAVFLREQGVAV
Ga0210399_102881791	3300020581	Soil	YAGAFESDAVLKFAEKVSGAVNIGTALPVSRLVTMLREQGVEV
Ga0210395_101601292	3300020582	Soil	LVEREIREYVQKYAVLNYAGAFESDAVLKFADRVSGAVNIGTALPVSRLIGLLREQGVEV
Ga0179596_104827191	3300021086	Vadose Zone Soil	GAFESDAVLRYAERISGSYNFVTALPVSRLTVFLREQGVEI
Ga0210400_105554071	3300021170	Soil	LNYAGAFESDAVLKFADRVSGAVNIGTALPVSRLIGLLREQGVEV
Ga0210405_100163657	3300021171	Soil	KYAVLNYAGAFESDAVLKFADRVSGAVNIGTALPVSRLIGLLREQGVEV
Ga0210405_102264071	3300021171	Soil	PGLRFAGAFEGDGVLRFANSVSGSYNFVTAIPVSRLAVFLREQAVEV
Ga0210408_114937631	3300021178	Soil	FESDAVLLFAERISGSYNFVTALPVSRLIVFLRAQGVTPETVD
Ga0210385_103066531	3300021402	Soil	GAFENDAVYRFSERIEGSYNIGTAIPVGRLTLFLREMGVNV
Ga0210386_115455151	3300021406	Soil	EIREYVQKYAVLNYAGAFESDAVLKFADRVSGAVNIGTALPVSRLIGLLREQGVEV
Ga0210384_102263723	3300021432	Soil	KFAGAFEGDGVLRFADSVSGSYNFITALPVSRLAVFLREQGVAV
Ga0210402_108050072	3300021478	Soil	GAFEGDGVLRFAESVSGSCNFVTGLPVSRLAVFLRELGVAV
Ga0210410_112890041	3300021479	Soil	GFQGDGVLRFADSVSGSYNVITAMPVNRLAVFLREPGVEV
Ga0242660_11824752	3300022531	Soil	YIGRYPVLRFAGAFEGDGVLRFADSVSGSYNFITALPVSRLAVFLREQGVEV
Ga0207685_100360931	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	AGAFEDDAVLKFADRVSGSPNIGTAMPVSRLTLMLREVGVEI
Ga0207663_103712812	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	AYPVKTFAGAFEDDAVLKFADRVSGSPNIGTAMPVSRLTLMLREVGVEI
Ga0207664_115346362	3300025929	Agricultural Soil	YIRAYPVLNYAGAFEEDAVRKFGERICGSYNIGTALPVSRLIVFLREQGVEV
Ga0207706_115566182	3300025933	Corn Rhizosphere	YVMRYPVLQFAGAFEGDGVLRFAESVSGSFNFMTGVPVSRLAVFLREQGVAV
Ga0207665_111709252	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	VLSFAGAFEGDGVLRFADSVSGSGSYNFITALPVSRLAVFLREQGVEV
Ga0209805_11248461	3300026542	Soil	LEREIQEYISKYAVLSYASVLESDAVLRFAERISGSYNFVTAIPVSRLIVFLREPAVEI
Ga0209577_101964391	3300026552	Soil	YAVLSYAGVLESDAVLRFAERISGSYNFVTAIPVSRLIVFLREPAVEI
Ga0209729_10004651	3300027061	Forest Soil	LNYAGAFESDAVLFFADRISGSCNFVTALPVSRLIVF
Ga0209448_101212621	3300027783	Bog Forest Soil	NDAVLLFADRIAGSYNLGTALPPSRLLVLLREQGVEV
Ga0209580_105812781	3300027842	Surface Soil	GVLRFADSVSGSYNFITALPVSRLAVFLREQGVDV
Ga0209579_108184791	3300027869	Surface Soil	LNYAGAFESDAVLKFGERVSGAVNIGTALPVSRLIGLLREQGVEV
Ga0209583_106024052	3300027910	Watersheds	IEHYVGKYDVLSYAGAFENDAVLLFADRIAGSYNIGTALPPSRLIILLREQGVEI
Ga0209698_1000041715	3300027911	Watersheds	MDLSKYDVLNYAGAFEHDAILLFADQIRGSYNLGTALPPSRLLVLLREQGVEV
Ga0209168_100062101	3300027986	Surface Soil	GDGVARFADSVSGSYNFITALPVSRLAVFLREQGVEV
Ga0222749_100697953	3300029636	Soil	AVLSYAGAFESDAVLRFAERISGSYNFVTALPVSRLIVFLRAQGVDI
Ga0170824_1120371081	3300031231	Forest Soil	DYVRRYPVLRYAGALEGDSVLRFADSVSGSYNFITAMPVSRLAVILREQGVEV
Ga0310686_1035373541	3300031708	Soil	FAGAFEGAGALRFADSVSGSYNFITAMPVSRLAVFLREQGVDA
Ga0307474_113692711	3300031718	Hardwood Forest Soil	KYDVLSYAGAFENDAVMLFADRIAGSYNLGTALPPSRLIVLLRQQGVEV
Ga0306917_103089252	3300031719	Soil	QDYIALYPVLSCAGGFEGDGVLRFAERISGSYNFLTAIPVSRLIVFLREQGVAI
Ga0307469_116981341	3300031720	Hardwood Forest Soil	GAFESDAVLRFAERISGSYNFVTALPVSRLIVFLRAQGVDI
Ga0307477_101565982	3300031753	Hardwood Forest Soil	DVLNYAGAFENDAVLLFADRIAGSYNVGTALPPSRLIVLLREQGVNI
Ga0307475_100145093	3300031754	Hardwood Forest Soil	LSYAGAFESDAVLLFADRISGSYNFVTALPVSRLIVFLRAQGVSI
Ga0318543_104019732	3300031777	Soil	AFESDALLFFADRICGSYNFVTALPVSRLIVFLRAQGIKI
Ga0316046_1015862	3300031817	Soil	DGVLRFADSVSGSYNFITALPVSRLAIFLREQGVEV
Ga0318568_109205372	3300031819	Soil	ARYPVQSCAGGFEGDGVLRFAERISGSYNFLTAIPVSRLIVFLREQGVAI
Ga0306923_108477891	3300031910	Soil	LRYAGAIEGDGVLRFADAVSASYNFITAMPVSRLAVFLRAQGVEVQDDSIRQ
Ga0310912_113418401	3300031941	Soil	LRYAGAIEGDGVLRFADAVSASYNFITAMPVSRLAVFLRAQGVEVPDDSIRQ
Ga0310916_109902901	3300031942	Soil	DGVLRFAERISGSYNFLTAIPVSRLIVFLREQGVAI
Ga0310913_111581961	3300031945	Soil	FESDAVLLFADRISGSYNFVTALPVSRLIVYLRSFSLPI
Ga0306926_104816173	3300031954	Soil	LRYAGAIEGDGVLRFADAVSASYNFITAMPVSRLAVFLRAQGVEVPD
Ga0318506_101819852	3300032052	Soil	VLNYAGAFESDAVLFFADRICGSYNFVTALPVSRLIVFLRAQGIKI
Ga0311301_107857242	3300032160	Peatlands Soil	AGAFENDAVLLFADRIAGSYNLGTALPPSRLIVLLREQGVEV
Ga0307470_117646371	3300032174	Hardwood Forest Soil	FRPLLEREIQNYIRAYPVKSFAAFEDDAVLKFADRVSGSPNIGTAMPVSRLTLMLREQGVDI
Ga0307471_1017810473	3300032180	Hardwood Forest Soil	QYINKYDVLSYAGAFENDAVLLFAERISGSYNLGTALPPSRLIVLLREQGVEV
Ga0307471_1025762332	3300032180	Hardwood Forest Soil	IQDYIGKYAVLNYAGAFESDAVLKFADRVSGAVNVGTALPVSRLTRMLREQGVEV
Ga0348332_109787145	3300032515	Plant Litter	GDGVLRFADSVSGSYNFITALPVGRLAIFLREQGVEV
Ga0335080_107790251	3300032828	Soil	AGAFEGDGVLRFAERVEGSFNFQTGVPVSRLIVMLREQGVEV
Ga0335081_101277001	3300032892	Soil	YISKYDVLNYAGAFENDAVLLFADRIAGSYNLGTALPPSRLVVLLRAQGVDI
Ga0371490_10212892	3300033561	Peat Soil	GAFEDDAVHMFAEHISGSYNIGTALPVRRLILFWREQGVNI