Metagenome Family F090900

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090900
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	110 residues
Representative Sequence	VSVRKLAVMAMLACSGLAVLAFVVAIGASRASAQIRTYTPPKTAKPGADWTEQIEEILPPGVESRAEATARIAAYKPDPVKYPVPRTPWDGKPDFSGVYWPDATITRPPMPLESLYRPEAREY
Number of Associated Samples	93
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	99.07 %
% of genes near scaffold ends (potentially truncated)	99.07 %
% of genes from short scaffolds (< 2000 bps)	87.04 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.074 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (11.111 % of family members)
Environment Ontology (ENVO)	Unclassified (30.556 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (47.222 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 37.75% β-sheet: 0.00% Coil/Unstructured: 62.25%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF13620	CarboxypepD_reg	12.04
PF00069	Pkinase	6.48
PF03422	CBM_6	2.78
PF12681	Glyoxalase_2	2.78
PF07681	DoxX	0.93
PF00903	Glyoxalase	0.93
PF02779	Transket_pyr	0.93
PF03404	Mo-co_dimer	0.93
PF13946	DUF4214	0.93
PF01979	Amidohydro_1	0.93
PF13360	PQQ_2	0.93
PF05960	DUF885	0.93
PF01011	PQQ	0.93
PF01258	zf-dskA_traR	0.93
PF00497	SBP_bac_3	0.93
PF13570	PQQ_3	0.93
PF12893	Lumazine_bd_2	0.93
PF00072	Response_reg	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	25.93
COG1734	RNA polymerase-binding transcription factor DksA	Transcription [K]	0.93
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.93
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.93
COG4805	Uncharacterized conserved protein, DUF885 family	Function unknown [S]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.07 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.07 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.07 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	80.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.26 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	70.37 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5.56 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.85 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	70.37 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.70 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.85 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	70.37 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	1.85 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.85 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	70.37 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.85 %
Novosphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	0.93 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	70.37 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.85 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.93 %
unclassified Novosphingobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium	0.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	70.37 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.85 %
Novosphingobium sp. Rr 2-17	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. Rr 2-17	0.93 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %
Unclassified	root	N/A	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886007\|SwRhRL2b_contig_2671426	All Organisms → cellular organisms → Bacteria → Acidobacteria	966	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c2010390	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	833	Open in IMG/M
3300000559\|F14TC_100015984	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2323	Open in IMG/M
3300000953\|JGI11615J12901_10420524	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	635	Open in IMG/M
3300003319\|soilL2_10087750	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1345	Open in IMG/M
3300003996\|Ga0055467_10315527	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300004643\|Ga0062591_102317472	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300005093\|Ga0062594_100242709	All Organisms → cellular organisms → Bacteria	1308	Open in IMG/M
3300005093\|Ga0062594_101830288	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	641	Open in IMG/M
3300005295\|Ga0065707_10086479	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5439	Open in IMG/M
3300005295\|Ga0065707_10169990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1492	Open in IMG/M
3300005329\|Ga0070683_101894335	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	573	Open in IMG/M
3300005330\|Ga0070690_101492577	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300005333\|Ga0070677_10847916	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300005341\|Ga0070691_10131399	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1269	Open in IMG/M
3300005345\|Ga0070692_10198657	Not Available	1173	Open in IMG/M
3300005345\|Ga0070692_10548751	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300005355\|Ga0070671_100391616	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1188	Open in IMG/M
3300005364\|Ga0070673_100610266	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	996	Open in IMG/M
3300005440\|Ga0070705_100709761	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	791	Open in IMG/M
3300005440\|Ga0070705_101821350	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300005444\|Ga0070694_101739668	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	531	Open in IMG/M
3300005458\|Ga0070681_11112368	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	711	Open in IMG/M
3300005467\|Ga0070706_101983227	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300005547\|Ga0070693_100360104	All Organisms → cellular organisms → Bacteria → Acidobacteria	998	Open in IMG/M
3300005549\|Ga0070704_100909773	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	792	Open in IMG/M
3300005615\|Ga0070702_100221581	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1265	Open in IMG/M
3300005615\|Ga0070702_100926818	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	684	Open in IMG/M
3300005618\|Ga0068864_100199336	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1838	Open in IMG/M
3300006163\|Ga0070715_10950386	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300006327\|Ga0068499_1166387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1087	Open in IMG/M
3300006847\|Ga0075431_100029382	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5658	Open in IMG/M
3300006852\|Ga0075433_10691141	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	894	Open in IMG/M
3300006969\|Ga0075419_10229297	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1236	Open in IMG/M
3300009100\|Ga0075418_11464537	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	741	Open in IMG/M
3300009100\|Ga0075418_12119398	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	613	Open in IMG/M
3300009147\|Ga0114129_10975134	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1069	Open in IMG/M
3300009156\|Ga0111538_10162245	All Organisms → cellular organisms → Bacteria → Proteobacteria	2839	Open in IMG/M
3300009176\|Ga0105242_10026549	All Organisms → cellular organisms → Bacteria	4591	Open in IMG/M
3300009177\|Ga0105248_10611704	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1229	Open in IMG/M
3300009177\|Ga0105248_11049835	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	921	Open in IMG/M
3300010046\|Ga0126384_11038480	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	748	Open in IMG/M
3300010046\|Ga0126384_11449842	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	642	Open in IMG/M
3300010047\|Ga0126382_10108513	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1812	Open in IMG/M
3300010047\|Ga0126382_12374481	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300010359\|Ga0126376_12862256	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300010362\|Ga0126377_10715560	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1055	Open in IMG/M
3300010371\|Ga0134125_10602190	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1214	Open in IMG/M
3300010403\|Ga0134123_11890032	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	653	Open in IMG/M
3300010403\|Ga0134123_13484483	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300011406\|Ga0137454_1073274	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300011442\|Ga0137437_1000386	All Organisms → cellular organisms → Bacteria	13342	Open in IMG/M
3300011445\|Ga0137427_10037208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1915	Open in IMG/M
3300012159\|Ga0137344_1065871	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	660	Open in IMG/M
3300012208\|Ga0137376_11817261	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300012231\|Ga0137465_1010932	All Organisms → cellular organisms → Bacteria → Proteobacteria	2607	Open in IMG/M
3300012232\|Ga0137435_1172035	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	665	Open in IMG/M
3300012498\|Ga0157345_1035457	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	579	Open in IMG/M
3300012501\|Ga0157351_1047060	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	556	Open in IMG/M
3300012922\|Ga0137394_10342111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1277	Open in IMG/M
3300012927\|Ga0137416_10016784	All Organisms → cellular organisms → Bacteria	4570	Open in IMG/M
3300012948\|Ga0126375_11315154	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	608	Open in IMG/M
3300012948\|Ga0126375_11486925	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300012960\|Ga0164301_11849079	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300013102\|Ga0157371_11162041	All Organisms → cellular organisms → Bacteria → Acidobacteria	594	Open in IMG/M
3300014326\|Ga0157380_13202485	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300014866\|Ga0180090_1003408	All Organisms → cellular organisms → Bacteria → Acidobacteria	2274	Open in IMG/M
3300015201\|Ga0173478_10206771	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	828	Open in IMG/M
3300015371\|Ga0132258_10087278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	7299	Open in IMG/M
3300015372\|Ga0132256_100058791	All Organisms → cellular organisms → Bacteria	3599	Open in IMG/M
3300015373\|Ga0132257_102785949	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	637	Open in IMG/M
3300015373\|Ga0132257_102976887	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	617	Open in IMG/M
3300015373\|Ga0132257_103368328	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	582	Open in IMG/M
3300018056\|Ga0184623_10477121	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300018077\|Ga0184633_10529043	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300018476\|Ga0190274_10182081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1822	Open in IMG/M
3300020005\|Ga0193697_1120133	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	612	Open in IMG/M
3300021445\|Ga0182009_10031293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. Rr 2-17	2127	Open in IMG/M
3300021791\|Ga0226832_10109910	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1015	Open in IMG/M
(restricted) 3300024062\|Ga0255039_10046417	All Organisms → cellular organisms → Bacteria → Proteobacteria	1635	Open in IMG/M
3300025535\|Ga0207423_1074170	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	612	Open in IMG/M
3300025912\|Ga0207707_10755827	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	813	Open in IMG/M
3300025918\|Ga0207662_11336887	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300025931\|Ga0207644_10272319	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1357	Open in IMG/M
3300025936\|Ga0207670_10455918	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1032	Open in IMG/M
3300026088\|Ga0207641_10525830	All Organisms → cellular organisms → Bacteria → Acidobacteria	1151	Open in IMG/M
3300026253\|Ga0208879_1278216	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	616	Open in IMG/M
3300026285\|Ga0209438_1001870	All Organisms → cellular organisms → Bacteria	7004	Open in IMG/M
3300026320\|Ga0209131_1360950	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300026530\|Ga0209807_1193829	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	722	Open in IMG/M
3300027332\|Ga0209861_1049105	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	622	Open in IMG/M
3300027533\|Ga0208185_1000238	All Organisms → cellular organisms → Bacteria → Acidobacteria	32415	Open in IMG/M
3300031538\|Ga0310888_10745748	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300031538\|Ga0310888_11054788	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300031740\|Ga0307468_100068555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1956	Open in IMG/M
3300031820\|Ga0307473_11064463	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	594	Open in IMG/M
3300032006\|Ga0310344_11543759	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300032012\|Ga0310902_10303435	All Organisms → cellular organisms → Bacteria → Acidobacteria	984	Open in IMG/M
3300032075\|Ga0310890_10531947	All Organisms → cellular organisms → Bacteria → Acidobacteria	899	Open in IMG/M
3300032180\|Ga0307471_102650396	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	635	Open in IMG/M
3300032180\|Ga0307471_102956334	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300032211\|Ga0310896_10533380	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	647	Open in IMG/M
3300032421\|Ga0310812_10373842	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	639	Open in IMG/M
3300033412\|Ga0310810_10364861	All Organisms → cellular organisms → Bacteria → Acidobacteria	1511	Open in IMG/M
3300033475\|Ga0310811_10550037	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1184	Open in IMG/M
3300033811\|Ga0364924_083323	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	712	Open in IMG/M
3300034354\|Ga0364943_0418387	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
3300034817\|Ga0373948_0117249	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	640	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.93%
Host-Associated	Host-Associated	24.07%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.19%
Plants	Host-Associated → Plants	24.07%
Aquatic	Environmental → Aquatic	15.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.67%
Sediment	Environmental → Aquatic → Sediment	9.26%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.41%
Marine	Environmental → Aquatic → Marine	6.48%
Floodplain	Environmental → Terrestrial → Floodplain	1.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.81%
Loam	Environmental → Terrestrial → Soil → Loam	17.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	9.26%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.63%
Oceanic	Environmental → Aquatic → Marine → Oceanic	2.78%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.78%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.85%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.85%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	0.93%
Strait	Environmental → Aquatic → Marine → Strait	0.93%
Sand	Environmental → Terrestrial → Soil → Sand	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.15%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	16.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	9.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.56%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.63%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.63%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.70%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.78%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.85%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.85%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	0.93%
Diffuse Flow	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow	0.93%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.11%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	7.41%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.48%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.63%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.70%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.70%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.78%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.78%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.78%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.78%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.85%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.85%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.85%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.93%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	0.93%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	0.93%
Hydrothermal Vent Fluids	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids	0.93%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.93%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886007	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003996	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006327	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0125m	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011406	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT539_2	Environmental	Open in IMG/M
3300011442	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2	Environmental	Open in IMG/M
3300011445	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2	Environmental	Open in IMG/M
3300012159	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT500_2	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012231	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT828_2	Environmental	Open in IMG/M
3300012232	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2	Environmental	Open in IMG/M
3300012498	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.yng.090410	Host-Associated	Open in IMG/M
3300012501	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.170610	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014866	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT890_16_10D	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300021791	Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer	Environmental	Open in IMG/M
3300024062 (restricted)	Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_1	Environmental	Open in IMG/M
3300025535	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1 (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026253	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A (SPAdes)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300027332	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027533	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032006	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MG	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300033811	Sediment microbial communities from East River floodplain, Colorado, United States - 28_j17	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
SwRhRL2b_0159.00003980	2162886007	Switchgrass Rhizosphere	MAMLACSGMAQIRTYTPPQTAAPGADWTKRIEEILPPGVESRAEATARIAAYKPDPVKYPVPRTPWDGKPDFSGVYWPDAVVTPPAVPLESLYRPDAREY
ICChiseqgaiiDRAFT_20103902	3300000033	Soil	MRRIAAPAXXVAAGIGVLALIAAIGASHVSAQIQPYTPPKTAAAGADWTRRIEEILPPGVESRAEATDRVAKYTPDPMKYPVPRTPWDGKPXFSGVYWPEATIAPPPVPLES
F14TC_1000159841	3300000559	Soil	VSVRKPAVMAMLACSGIAVLALVVAVGVSRVSAQIRTYTPPQTAPPGADWTKRIEEILPPGVESRAEATARIAAYKPDPVKYPVPRTPWDGKPDFSGVYWPD
JGI11615J12901_104205242	3300000953	Soil	VSVRKLAVMAMLASSGIAVVALVVAIGAPRVSAQIREYKPPKTAKPGADWTERIEEILPPGVESRAEATARVAAYKPDPVKYPVPRTPWDGKPDFSGVYWPDAVVTRPPVALESLYRPDAREYRE
soilL2_100877502	3300003319	Sugarcane Root And Bulk Soil	VSVRKLALVAMLACSGIAVLALVVAIGASRVSAQIREYTPPKTAAPGADWTKRIEEILPPGVESRAEATARVAAYKPDPVKHPVPRTPWDGKPDFSGVYWPD
Ga0055467_103155271	3300003996	Natural And Restored Wetlands	VSVRKLAVMTMLAGAGIAVLALVAALGAPRASAQVRPYMPPKTAKPGADWTERIEEILPPGVESRAEATRRIQTYKPDPAKYPVPRTPWDGKPDFSGVYWPDATFAP
Ga0062591_1023174722	3300004643	Soil	VRKLAVIATLALSSVAILALLAAMGVSGASAQIREYTPPKAADPGADWTKRIEEILPPGVESRAEATARIAAYKPDPVKYPVPRTAWDGKPDFSGVYWPD
Ga0062594_1002427093	3300005093	Soil	MRKLAVVAMLACSGIAVLALVVAIGASGVSAQVRTYTPPNTAKPGEDWTKRIEGILPPGVESRAEATARVAAYKPDPLKYPVPRTPWDGKPDFSGVYWPDATVTPPPVALESLYRPDARE
Ga0062594_1018302881	3300005093	Soil	VNVRRLAVTAVLACSCIAVLAAQIKTYSPPQTANPGEDWTKRIEGILPPGVESRAEATARLEAYKPDPVKHPVKRTPWDGKPDFSGVYWPDAIVNRPPVPLESLYRPDA
Ga0065707_100864791	3300005295	Switchgrass Rhizosphere	VSVRRLAVMAMLACSGMAQIRTYTPPQTAAPGADWTKRIEEILPPGVESRAEATARIAAYKPDPVKYPVPRTPWDGKPDFSGVYWPDAVVTPPAVPLESLYRPDAREYRERG
Ga0065707_101699901	3300005295	Switchgrass Rhizosphere	VSVRKLAVIAMLGLSSVAILALVAAMGASRASAQIREYTPPKTADPGADWTKRIEEILPPGVESRAEATARIAAYKPDPGKYPVPRTSWDGKPDFSGVYWPDATVSPP
Ga0070683_1018943352	3300005329	Corn Rhizosphere	VRKLAVIATLALSSVAILALLAAMGVSGASAQIREYTPPKAADPGADWTKRIEEILPPGVESRAEATARIAAYKPDPVKYPVPRTAWDGKPDFSGVYWPDATISAPPMPLETLY
Ga0070690_1014925772	3300005330	Switchgrass Rhizosphere	VNVRRLAVTAVLACSCIAVLAAQIKTYSPPQTANPGEDWTKRIEGILPPGVESRAEATARIAAYQPDPVKHPVPRTPWDGKPDFSGVYWPDAIVNRPPVPLESLYRPDAREYRERGGA
Ga0070677_108479161	3300005333	Miscanthus Rhizosphere	VSVRRLALTAMLACSGIAVLTAQIKTYTPPQTAKPGEDWTKRIEGILPPGVESRAEATARLEAYKPDPVKHPVKRTPWDGKPDFSGVYWPDAIVNRPPVPLESLYRPDAREY
Ga0070691_101313993	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	VKVRKLAVMAMLACSCVAVLALVAAIGASRASAQIRTYTPPKTAKPGADWTERIEEILPPGVESRAEATARIAAYKPDPVKYAVPRTPWDGKPDFSGVYWPDAQIAPPPVPLESLYRPDAREYREGGGAAAGLIDWRGIDT
Ga0070692_101986572	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	VSVRKLAVMAMLASSGIAVLALVVAIGASRASAQIREYKPPKTAPPGADWTERIEEILPPGVESRAEATARVVAYKPDPVKYPVPRTSWDG
Ga0070692_105487512	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	VRKLAVIATLALSSVAILALLAAMGVSGASAQIREYTPPKAADPGADWTKRIEEILPPGVESRAEATARIAAYKPDPVKYPVPRTAWDGKPDFS
Ga0070671_1003916162	3300005355	Switchgrass Rhizosphere	VNVRRLAVTAVLACSCIAVLAAQIKTYSPPQTAKPGEDWTKRIEGILPPGVESRAEATARLEAYKPDPVKHPVPRTPWDGKPDFSGVYWPDAIVNRPPVPLESLYRPDAREYRER
Ga0070673_1006102662	3300005364	Switchgrass Rhizosphere	VSVRRLALTAMLACSGIAVLTAQIKTYTPPQTAKPGEDWTKRIEGILPPGVESRAEATARIEAYKPDPVKHPVPRTPWDGKPDFSGVYWPDAIVNRPPV
Ga0070705_1007097611	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	VSVRKLAVMAMLASSGIAVLAFVVAIGASRASAQIREYKPPKTAPPGADWTERIEEILPPGVESRAEATARVAAYKPDPVKYPVPRTPWDGKPDFSGVYWPDA
Ga0070705_1018213501	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	VNVRRLAVTAVLACSCIAVLAAQIKTYSPPQTANPGEDWTKRIEGILPPGVESRAEATARLEAYKPDPVKHPVKRTPWDGKPDFSGVYWPDAIVNRPPVPLESLYRPDAREY
Ga0070694_1017396681	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	VRKLAVMAMLASSGIAVLALVVAIGASRASAQIREYKPPKTAPPGADWTERIEEILPPGVESRAEATARVAAYKPDPAKYPVPRTPWDGKPDFSGV
Ga0070681_111123682	3300005458	Corn Rhizosphere	MRKLAVVAMLACSGIAVLALVVAIGASGVSAQVRTYTPPNTAKPGEDWTKRIEGILPPGVESRAEATARLEAYKPDPVKHPVKRTPWDGKPDFSGVYWPDAIVNRPPVPLESLYRPDAREYRE
Ga0070706_1019832271	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VSVRRLAVTAMLVCSGIAVLAAQIKTYTPPQTAKPGEDWTKRIEGILPPGVESRAEATARIAAYQPDPVKHPVPRTPWDGKPDFSGVYWPDAIVTRPPVPLESLYRPD
Ga0070693_1003601041	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MLVCSGIAVLAAQIKTYTPPQTAKPGEDWTKRIEGILPPGVESRAEATARIEAYKPDPVKHPVPRTPWDGKPDFSGV
Ga0070704_1009097732	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VSVRRLALTAMLACSGIAVLTAQIKTYTPPQTAKPGEDWTKRIEGILPPGVESRAEATARIEAYKPDPVKHPVPRTPWDGKPDFSGVYWPDAIVNRPPVALESLYRP
Ga0070702_1002215812	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	VNVRRLAVTAVLACSCIAVLAAQIKTYSPPQTANPGEDWTKRIEGILPPGVESRAEATARVAAYKPDPLKYPVPRTPWDGKPDFSGVYWPDATVTPPPVALESLYRPDAREY
Ga0070702_1009268181	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	VSVRKLAVMAMLASSGIAVLAFVVAIGASRASAQIREYKPPKTAPPGADWTERIEEILPPGVESRAEATARVAAYKPDPVKYPVPRTPWDGKPDFSGVYWPDAPVTRPPVPLESLYRPDAREYREHGGAA
Ga0068864_1001993361	3300005618	Switchgrass Rhizosphere	VNVRRLAVTAVLACSCIAVLAAQIKTYSPPQTANPGEDWTKRIEGILPPGVESRAEATARLEAYKPDPVKHPVKRTPWDGKPDFSGVYWPDAIVNRPPVPLESLYRPDAREYRER
Ga0070715_109503861	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	VSVRKFAVMAMLACSGVATVALVVALGASRASAQIRKYTPPQTAEPGADWTKQIEKILPPGVESRAEATARIAAYKPDPVKYPVPRTAWDGKPDFSGVYWPDATISRPPVPLES
Ga0068499_11663872	3300006327	Marine	MLARSAIAVLVLLVAFGASSASAQIQPYSPPETASEGSDWTERIVDILPEGVESRSEARERIVAHVPDPERHPVPRTSWDGKPDFSGVYWPNSTLTRPPVPLESSYRPEVREYREGGGAAVGLIDW
Ga0075431_1000293827	3300006847	Populus Rhizosphere	VSVRKLAVMTILAGAGIAVLALVAALGAPRASAQIRPYTPPKTATPGADWTERIEEILPPGVESRAEATKRVQTYTPDPAKYPIPRTPWDGKPDFSGVYWPDATFAPPPVALESL
Ga0075433_106911414	3300006852	Populus Rhizosphere	VSVRKFAVMAMLACSGVATVALVVALGASRASAQIRKYTPPQTAEPGADWTKQIEKILPPGVESRAEATARIAAYKPDPVKYPVPRTAWDGKPDFSGVYWPDATISR
Ga0075419_102292972	3300006969	Populus Rhizosphere	VSVKNSAVMTMLAGSAIAVLVLFAAIGASRASAQIRPYTPPQTAAPGADWTERIEEILPPGVESRAEATARLVAYKPDPVKYPVPRTPWDGKPDFSGVYWPDATIAPPPVALESLYRPEAREYREGGGAARGLFD
Ga0075418_114645372	3300009100	Populus Rhizosphere	VRKLAVMAMLACSGIAVLALVVVIGVSRVSAQIRTYTPPQTAAPGADWTKRIEEILPPGVESRAEATARIAAYKPDPVKYPVPRTPWDGKPDFSGVYWPDATVTPPPMPLESLYRPEAREYRERGGAAAGL
Ga0075418_121193982	3300009100	Populus Rhizosphere	MTMLAGAGIAVLALVAALGAPRASAQVRPYTPPKTAKPGADWTERIEEILPPGVESRAEATRRVQTYKPDPAKYPIPRTPWDGKPDFSGVYWPDATFAPPPVALESL
Ga0114129_109751341	3300009147	Populus Rhizosphere	MAMLACSGVAVLALVVAIGASRVSAQIRTYTPPQTAEPGADWTKRIEKILPPGVESRAEATARIAAYKPDPVKFPVPRTPWDGKPDFSGVYWPDAVVTAPPVPLESLYRP
Ga0111538_101622451	3300009156	Populus Rhizosphere	VSVRKLAVIAMLGLSSVAILALVAAMGASRASAQIREYTPPKTADPGADWTKRIEEILPPGVESRAEATARIAAYKPDPGKYPVPRTSWDGKPDFSGVYWPDA
Ga0105242_100265491	3300009176	Miscanthus Rhizosphere	VKVRKLAVMAMLACSCVAVLALVAAIGASRASAQIRTYTPPKTAKPGADWTERIEEILPPGVESRAEATARIAAYKPDPVKYAVPRTPWDGKPDF
Ga0105248_106117041	3300009177	Switchgrass Rhizosphere	VSVKKLAVIAMLGLSSVAILALVAAMGASRASAQIREYTPPKTADPGADWTKRIEEILPPGVESRAEATARIAAYKPDPGKYPVPRTSWDGKPDFSGVYWPDATVSPPPMPLEPLYRPEAREYRE
Ga0105248_110498352	3300009177	Switchgrass Rhizosphere	VRRLAVTAVLACSGIAVLAAQIKTYTPPQTAKPGEDWTKRIEGILPPGVESRAEATARIEAYKPDPVKHPVPRTPWDG
Ga0126384_110384802	3300010046	Tropical Forest Soil	MAMLACSGVATVALIVAIGASRASAQIRKYTPPQAAEPGADWTKQIEKILPPGVESRAEATARIAAYKPDPVKYPVPRTSWDGKPDFS
Ga0126384_114498422	3300010046	Tropical Forest Soil	VGVRRLAVMAMLAYSSIAVLALVVAIGPSRASAQIRTYTPPKTAPPGADWTKRIEEILPPGVESRAQATERIASYKPDPVKYPVPRTAWDGKPDFSGVYWPDA
Ga0126382_101085132	3300010047	Tropical Forest Soil	VRRLAVTAILACSCIAVLAAQIKTYTPPQTAKPGEDWTKRIEGILPPGVESRAEATARIAAYKPDPVKHPVPRTPWDGKPDFSGVYWPDAI
Ga0126382_123744811	3300010047	Tropical Forest Soil	MLACSGIATLALVGTLGVSRASAQIRPYTPPQTAEPAADWTKQIEKILPPGVERRAEATARIAAYKPDRVKYPVPRSSWDGKPDFSGVYWPDAIISQPSVPLASLYRPD
Ga0126376_128622561	3300010359	Tropical Forest Soil	MLACSGIAVLTAQIKTYTPPQTAKPGEDWTKRIEGILPPGVESRAEATARIAAYKPDPVKHPVPRTPWDGKPDFSGVYWPDAIVNRAPVALESLYRPD
Ga0126377_107155602	3300010362	Tropical Forest Soil	VTAILACSCIAVLAAQIKTYTPPQTAKPGEDWTKRIEGILPPGVESRAEATARIAAYKPDPVKHPVPRTPWDGKPDFSGVYWPDAIVNRPPVPLES
Ga0134125_106021902	3300010371	Terrestrial Soil	MAMLVSSGIAVLALVVAIGASRASAQIREYKPPKTAPPGADWTERIEEILPPGVESRAEATARVAAYKPDPVKYPVPRTPWDGKPDFSGVYWPDAPVTRPPVPLESLYRPDAREYREHGGAAAGLIDWRGI
Ga0134123_118900321	3300010403	Terrestrial Soil	MRKLAVIAMLGLSSAAILALVAAMGASRASAQIREYIPPKTADAGADWTKRIEEILPPGVESRAEATARIAAYKPDPGKYPVPRTSWDGKPDFSGVY*
Ga0134123_134844832	3300010403	Terrestrial Soil	MRKLAVVAMLACSGIAVLALFVAIGPSRASAQIRTYTPPQTAAPGADWTKRIEEILPPGVESRAEATARIAAYKPDPVKYPVPRTPWDGK
Ga0137454_10732742	3300011406	Soil	MAVLACSGIAVLTSFVAIGASRASAQIRTYTPPQTAAPGADWTERIEELLPPGVESRAEATARVVAYKPDPVKYPVPRTAWDGKPDFSGVYWPDATIA
Ga0137437_100038612	3300011442	Soil	MAVLACSGIAVLALFVAIGPSGASAQIRTYKPPQTAAPGADWTKRIEEILPPGVESRAEATARIAAYKPDPVKYPVPRTPWDGKP
Ga0137427_100372083	3300011445	Soil	MAMLACCGMAGLALFVAIGSSRASAQIRTYTPPQTAKPGADWTERIEEILPPGVESRAEATARIVAYKPDPVKYPVPRTPWDGKPDFSGVYWPDATIAPPPVPLESLYRPEAREYREGGGAAAGLID
Ga0137344_10658711	3300012159	Soil	MAVLACSGIAVLALFVAIGPSRASAQIRTYKPPQTAAPGADWTKRIEEILPPGVESRAEATARIAAYKPDPVKYPVPRTPWDGKPDFSGVYWPDATITPPPVPLESLYRPEAREYREGGG
Ga0137376_118172611	3300012208	Vadose Zone Soil	VRKFAVIAMLACSGIAVLALFMAIGASRASAQIRPYTPPQTAPPGADWTKRIDELLPPGVESRAEATARIAGYKPDPVKYPVPRTPWDGKPDFSGVYWPDATITPP
Ga0137465_10109324	3300012231	Soil	MAVLACSGIAVLALFVAIGPSGASAQIRTYKPPQTAAPGADWTKRIEEILPPGVESRAEATARIAAYKPDPVKYPVPRTPWDGKPDFSGVYWPDATITPP
Ga0137435_11720351	3300012232	Soil	VSVRKFAVIAMLACCAIAGLALFVAIGPSRVSAQIRTYKPPQTAAPGADWTKRIEEILPPGVESRAEATARIAAYKPDPVKYPVPRTPWDGKPDFSGVYWPDATITPPPV
Ga0157345_10354571	3300012498	Arabidopsis Rhizosphere	VRRLAVTALLACSGIAVLTAQIKTYTPPQTAKPGEDWTKRIEGILPPGVESRAEATARIGAYQPDPVKHPVPRTPWDGKPDFSGVYWPDAIV
Ga0157351_10470601	3300012501	Unplanted Soil	VSVRRLAVTAMLVCSGIAVLAAQIKTYTPPQTAKPGEDWTKRIEGILPPGVESRAEATARIAAYQPDPVKHPVPRTPWDGKPDFSGVYWPDAI
Ga0137394_103421111	3300012922	Vadose Zone Soil	VSVRKLSVLAMLACSGLAVLALVVAIGASRASAQIRTYTPPKTAKPGADWTERIEEILPPGVESRAEATARVAAYKPDPVKYPVPRTPWDGKPDFSGVY
Ga0137416_100167841	3300012927	Vadose Zone Soil	MLACSGLAVLALVVAIGASRASAQIRTYTPPKTAKPGADWTERIEEILPPGVESRAEATARVAAYKPDPVKYPVPRTPWDGKPDFSGVYWPDATITPPPVPLESLYRPEAREYRERGGAAAGLIDWRGIDTPN
Ga0126375_113151542	3300012948	Tropical Forest Soil	MLACSGIAVLAAQIKTYTPPQTAKPGEDWTKRIEGILPPGVESRAEATARIAAYKPDPVKHPIPRTPWDGKPDFSGVYWPDAIVTRPPVPLESLYRP
Ga0126375_114869252	3300012948	Tropical Forest Soil	MAMLACSGVATVALIVAIGASRASAQIRKYTPPQTAAPGQDWTKRIEEILPPGVESRAEATARIAAYKPDPVKYPVPRTAWDGKPDFSGVYWPDAT
Ga0164301_118490792	3300012960	Soil	VRKFAVVAMLACSGVATVALVVALGASRASAQIRKYTPPQTAEPGADWTKQIEKILPPGVESRAEATARIAAYKPDPVKYPVPRTAWDGKPDFSGVYWPDATISRPPVPLESLYRPEAREYRKRRGAAAGLIDWRGIDTP
Ga0157371_111620411	3300013102	Corn Rhizosphere	VNVRRLAVTAVLACSCIAVLAAQIKTYSPPQTANPGEDWTKRIEGILPPGVESRAEATARIAAYQPDPVKHPVPRTPWDGKPDF
Ga0157380_132024851	3300014326	Switchgrass Rhizosphere	MAILACCGIAVLALFVAMGTSRASAQIRTYTPPQTAAPGADWTKRIEEILPPGVESRAEATARIAAYTPDPVKYPVPRTSWDGKPDFSGVYWPDATITPPPVPLESLYRPEAR
Ga0180090_10034084	3300014866	Soil	MAVLACSGIAVLALFVAIGPSRASAQIRTYKPPQTAAPGADWTKRIEEILPPGVESRAEATARIAAYKPDPVKYPVPRTPWDGKPDFSGVYWPD
Ga0173478_102067711	3300015201	Soil	VSVRKLAVIATLALSSVAILALLAAMGVSGASAQIREYTPPKAADPGADWTKRIEEILPPGVESRAEATARIAAYKPDPVKYPVPRTAWDGKPDFSGVYWPDATISAPPMPLETLYRPEA
Ga0132258_100872787	3300015371	Arabidopsis Rhizosphere	MLVCSGIAVLAAQIKTYTPPQTAKPGEDWTKRIEGILPPGVESRAEATARIAAYQPDPVKHPVPRTPWDGKPDFSGVYWPDAIVTRPPVPLESLYRPDAREYRERGGAAAGLIDWRGID
Ga0132256_1000587914	3300015372	Arabidopsis Rhizosphere	VRRLAVTAMLVCSGIAVLAAQIKTYTPPQTAKPGEDWTKRIEGILPPGVESRAEATARIAAYQPDPVKHPVPRTPWDGKPDFSGVYWPDAIV
Ga0132257_1027859491	3300015373	Arabidopsis Rhizosphere	VSVRKFAVMAVLACSGVATVALVVALGASRAAAQIRKYTPPQTAEPGADWTKQIEKILPPGVESRAEATARIAAYKPDPVKYPVPRTAWDGKPDFSGVYWPDATISRPPV
Ga0132257_1029768872	3300015373	Arabidopsis Rhizosphere	MAMLACSGMAQIRTYTPPQTAAPGADWTKRIEEILPPGVESRAEATARIAAYKPDPLKYPVPRTPWDGKPDFSGVYWPDAVVTPPAVPLESLYRPDAREYR
Ga0132257_1033683282	3300015373	Arabidopsis Rhizosphere	VRRLAVTALLACSGIAVLAAQIKTYTPPQTAKPGEDWTKRIEGILPPGVESRAEATARIAAYKPDPVKHPVPRTPWDGKPDFS
Ga0184623_104771211	3300018056	Groundwater Sediment	VSVRKSAVMTMLAGSGIAVLALFVAIGASRASAQVRPYTPPQAAAPGADWTERIEEILPPGVESRAEATARIAAYKPDPVKYPVPRTPWDGKPDFSGVYWPDATITPPPVPLESLYR
Ga0184633_105290432	3300018077	Groundwater Sediment	VSVRTCTVMTPAGAGTAVLALFVAIGASRASAQVRPYTPPKSAAGADWSERIGELLPPGVETRAEATERVANYTPDPATYPVPRTSWDGKPDFSGVYWSEATITPPRVPLESLYRPEAREYREGGGAARGLID
Ga0190274_101820811	3300018476	Soil	VSVRKFAVMAVLACSGIAVLALFVPIGASRASAQIRTYTPPQTAAPGADWTKRIEEILPPGVESRAEATERIAAYKPDPVKYPVPRTPWDGKPDFSGVYWPDATITPPPVPLESLYRPEAREYRERG
Ga0193697_11201331	3300020005	Soil	VSVRKLAVMAMLASSGIAVLAFVVAIGASRASAQIREYKPPKDAPPGADWTKRIEEILPPGVESRAEATARIVAYKADPVKYPVPRTPWDGKPDFSGVYWPDATVTPPPVPLESLYRPE
Ga0182009_100312931	3300021445	Soil	VTAVLACSGIAVLAAQIKTYTPPQTAKPGEDWTKRIEGILPPGVESRAEATARIAAYKPDPVKHPVPRTPWDGKPDFSGVYWPDAIVNRPPVPLESLYRPDAREYRERGGAAAGLIDWRGID
Ga0226832_101099101	3300021791	Hydrothermal Vent Fluids	MLAHFGIAITALLVVALGTSRASAQIEPYTPPQAAEEGADWSARVVELLPEGVETRFEARKRLAAHEPDPVQYPVPRTSWDGKPDFSGIYWPNATVTPPPVSLESLYRPEVREYREGGGS
(restricted) Ga0255039_100464171	3300024062	Seawater	MALLVTIGAPSASAQVQTYTPPETAAPGADWTERIVELLPPGVESRAEARVRIAAYTPDPVAYPVPRTSWDGKPDFSGVYWPDATIAPP
Ga0207423_10741701	3300025535	Natural And Restored Wetlands	VGVRRLSVMAVLACSGIAGLALVVAIGPSRASAQIRTYTPPKTAPPGADWTKRIEEILPPGVESRAQATERIASYKPDPVKYPVPRTAWDGKPDFSGVYWPDATVTPPPVPLESLYR
Ga0207707_107558271	3300025912	Corn Rhizosphere	VSMRKLAVVAMLACSGIAVLALVVAIGASGVSAQVRTYTPPNTAKPGEDWTKRIEGILPPGVESRAEATARIEAYKPDPVKHPVPRTPWDGKPDFSGVYWPDAIVNRPPVPLESLYRPDAREYRERGGAAPACARLASRQDDSGRLPLALQEG
Ga0207662_113368871	3300025918	Switchgrass Rhizosphere	VSVRKLAVMAMLACSGIATVALVATIGASRAAAQIRPYTPPQSAEPGADWTKQIEKILPPGVESRAEATARIAAYKPDPVKYPVPRTSWDGKPDFSGVYWPDATIAPPPV
Ga0207644_102723192	3300025931	Switchgrass Rhizosphere	VNVRRLAVTAVLACSCIAVLAAQIKTYSPPQRRNPAKDWTKRIEGILPPGVESRAEATARLEAYKPDPVKHPVPRTPWDGKPDFSGVYWPDAIVNRPPVPLESLYRPDAREYRERGGAAAGLIDWRG
Ga0207670_104559182	3300025936	Switchgrass Rhizosphere	VSVRRLALTAILACSGIAVLTAQIKTYTPPQTAKPGEDWTKRIEGILPPGVESRAEATARIEAYKPDPVKHPVPRTPWDGKPDFSGVYWPDAIVNRP
Ga0207641_105258302	3300026088	Switchgrass Rhizosphere	VSVRRLAVTAMLVCSGIAVLAGQIKTYTPPQTAKPGEDWTKRIEGILPPGVESRAEATARIAAYQPDPVKHPVPRTPWDGKPDFSGVYWPDAIVTRPPVPLESLYR
Ga0208879_12782162	3300026253	Marine	LNARRFAMMAMLARSSITVVVLLVAIGTSRTSAQIQTYTPPEAAPEGADWTERIVEILPPGVESRAEARLRIAAYTPDPVNYPVPRTSWDGKPDFSGVYWPDATIAPPPEPLESLYRPEARGYREGGGAAVGLIDW
Ga0209438_10018701	3300026285	Grasslands Soil	VSVRKLAVMAMLACSGLAVLAFVVAIGASRASAQIRTYTPPKTAKPGADWTEQIEEILPPGVESRAEATARIAAYKPDPVKYPVPRTPWDG
Ga0209131_13609501	3300026320	Grasslands Soil	VSVRKLAVMAMLACSGLAVLAFVVAIGASRASAQIRTYTPPKTAKPGADWTEQIEEILPPGVESRAEATARIAAYKPDPVKYPVPRTPWDGKPDFSGVYWPDATITRPPMPLESLYRPEAREY
Ga0209807_11938291	3300026530	Soil	VSVRRLALTAMLACSGIAVLAAQIKTYTPPQTAKPGEDWTKRIEGILPPGVESRAEATARIASYKPDPVKHPVPRTPWDGKPDFSGVY
Ga0209861_10491052	3300027332	Groundwater Sand	MFSFAIGYSGAARASAQIQPYTPPQTAKPGADWTERIEAILPPGVESRAEATARIAAYKPDPVKYPVPRTSWDGKPDFSGVYWPDATIATPPVPLESLYRPEAREYREGGGAARGLI
Ga0208185_100023826	3300027533	Soil	VSVRKFAVMAVLACSGIAVLALFVAIGPSRASAQIRTYKPPQTAAPGADWTKRIEEILPPGVESRAEATARIAAYKPDPVKYPVPRTPWDGKPDFSGVYWPDATITPPPVPLESLYRPEAREYREGGGAAAGLIDW
Ga0310888_107457481	3300031538	Soil	VSVRRLAVTAMLVCSGIAVLAAQIKTYTPPQTAKPGEDWTKRIEGILPPGVESRAEATARIAAYQPDPVKHPVPRTPWDGKPDFSGVYWPDAIVTRPPVPLESLYRPDAREYRE
Ga0310888_110547881	3300031538	Soil	VSVRKLAVMTMLAGAGIAVLALVAALGAPRASAQVRPYTPPKTAKPGADWTERIEEILPPGVESRAEATRRIQTYKPDPAKYPVPRTPWDGKPDFSGVYWPDATFAPPPVALESLYRPEAREY
Ga0307468_1000685551	3300031740	Hardwood Forest Soil	VSVRKLAVMAVLASSGIAVLALVVAIGASRVSAQIREYKPPKTAPPGADWTERIEEILPPGVESRAEATARVAAYKPDPAKYPVPRTPWDGKPD
Ga0307473_110644631	3300031820	Hardwood Forest Soil	VSVRRLALTAMLACSGIAVLAAQIKTYTPPQTAKPGEDWTKRIEGILPPGVVSRAEATARIAAYKPDPVKHPVPRTPWDGKPDFSGVYWPDAIVTRPPVPLESLYRPEARE
Ga0310344_115437591	3300032006	Seawater	MLARSAIAVLVLLVAFGASSASAQIQPYSPPETASEGSDWTERIVDILPEGVESRSEARERIVAHVPDPERHPVPRTSWDGKPDFSGVYWPNSTLTRPPVPLESIYRPEVREYREGGGAAVGLIDW
Ga0310902_103034352	3300032012	Soil	VSVRRLAVTAMLVCSGIAVLAAQIKTYTPPQTAKPGEDWTKRIEGILPPGVESRAEATARIAAYQPDPVKHPVPRTPWDGKPDFSGVYWPDAIVNRPPVALESLYRPDAREY
Ga0310890_105319472	3300032075	Soil	MLVCSGIAVLAAQIKTYTPPQTAKPGEDWTKRIEGILPPGVESRAEATARIAAYQPDPVKHPVPRTPWDGKPDFSGVYWPDAIVTRPPVPLESLYRPDAREYRERGGAAAGLIDWRGIDTPN
Ga0307471_1026503961	3300032180	Hardwood Forest Soil	VSVRKLAVMAMLACSGIAVLAFVVAIGASRASAQIRTYTPPKTAKPGADWTERIEEILPPGVESRAEATARIAAYKPDPVKYPVPRTPWDGKPDFSGVYWPDATIAPPPVPLESLYRPDAREYRERGGAAAGL
Ga0307471_1029563341	3300032180	Hardwood Forest Soil	MRPRSALPSHPSAASLVFRTGRCAVSVRKFAVVAILSCSGIVLGAQIRPYTPPETAPPGADWTKQIEKILPPGVESRAEATARIAAYEPDPVKHPVPRTPWDGKPDFSGVYWPDATVAPPPVPLESLYRPDAREYREGGGAAAGLI
Ga0310896_105333801	3300032211	Soil	VRKLAVIAMLGLSSVAILALVAAMGASRASAQIREYTPPKTADPGADWTKRIEEILPPGVESRAEATARIAAYKPDPGKYPVPRTSWDGKPDFSGVYWPDATVSPPPMPLEPL
Ga0310812_103738421	3300032421	Soil	VSVRRLAVTAVLACSGIAVLAAQIKTYTPPQTAKPGEDWTKRIEGILPPGVESRAEATARIAAYTPDPAKHPVPRTPWDGKPDFSGVYWPDAIVTPPPVPLESLYRPEAREYRERGGAAAGLI
Ga0310810_103648613	3300033412	Soil	VSVRRLAVTAVLACSGIAVLAAQIKTYTPPQTAKPGEDWTKRIEGILPPGVESRAEATARIAAYKPDPVKHPVPRTPWDGKPDFSGVYWP
Ga0310811_105500371	3300033475	Soil	VNVRRLAVTAILACSGIAVLAGQIKTYTPPHTAKPGEDWTKRIEGILPPGVESRAEATARIAAYTPDPAKHPVPRTPWDGKPDFSGVYWPDAIVTPPPVPLESLYRPEAREY
Ga0364924_083323_1_270	3300033811	Sediment	MMTMLAGSGIAVLALFVAIGASRASAQIQPYTPPRTAAPGADWTERIEEILPPGVESRAEATARVVAYKPDPVKYPVPRTSWDGKPDFSG
Ga0364943_0418387_126_518	3300034354	Sediment	MAVLACSGIAVLALFVAIGPSRASAQIRTYKPPQTAAPGADWTKRIEEILPPGVESRAEATARIAAYKPDPVKYPVPRTPWDGKPDFSGVYWPDATITPPPVPLESLYRPEAREYREGGGAAAGLIDWRGI
Ga0373948_0117249_294_638	3300034817	Rhizosphere Soil	VSVRRLAVTAMLVCSGIAVLAAQIKTYTPPQTAKPGEDWTKRIEGILPPGVESRAEATARIAAYQPDPVKHPVPRTPWDGKPDFSGVYWPDAIVTRPPVPLESLYRPDAREYRER

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters