Metagenome / Metatranscriptome Family F090899

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090899
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	65 residues
Representative Sequence	MTYKDFYAQALLSSLPIAYAVEKDLAHGREPTPENVALGASQLAMALTDLLAKTVLNVPGANEQF
Number of Associated Samples	89
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	26.42 %
% of genes near scaffold ends (potentially truncated)	31.48 %
% of genes from short scaffolds (< 2000 bps)	84.26 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (50.926 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil (17.593 % of family members)
Environment Ontology (ENVO)	Unclassified (40.741 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (72.222 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 53.76% β-sheet: 0.00% Coil/Unstructured: 46.24%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF16657	Malt_amylase_C	8.33
PF07582	Obsolete Pfam Family	5.56
PF00128	Alpha-amylase	4.63
PF00582	Usp	3.70
PF11533	DUF3225	2.78
PF02894	GFO_IDH_MocA_C	2.78
PF09527	ATPase_gene1	1.85
PF06165	Glyco_transf_36	1.85
PF02653	BPD_transp_2	1.85
PF02874	ATP-synt_ab_N	0.93
PF06204	Obsolete Pfam Family	0.93
PF00881	Nitroreductase	0.93
PF00512	HisKA	0.93
PF01374	Glyco_hydro_46	0.93
PF00593	TonB_dep_Rec	0.93
PF11964	SpoIIAA-like	0.93
PF08448	PAS_4	0.93
PF00248	Aldo_ket_red	0.93
PF01408	GFO_IDH_MocA	0.93
PF11941	DUF3459	0.93
PF14486	DUF4432	0.93
PF13602	ADH_zinc_N_2	0.93
PF05977	MFS_3	0.93
PF14366	DUF4410	0.93
PF02734	Dak2	0.93
PF00989	PAS	0.93
PF00072	Response_reg	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0296	1,4-alpha-glucan branching enzyme	Carbohydrate transport and metabolism [G]	4.63
COG0366	Glycosidase/amylase (phosphorylase)	Carbohydrate transport and metabolism [G]	4.63
COG1523	Pullulanase/glycogen debranching enzyme	Carbohydrate transport and metabolism [G]	4.63
COG3280	Maltooligosyltrehalose synthase	Carbohydrate transport and metabolism [G]	4.63
COG0673	Predicted dehydrogenase	General function prediction only [R]	2.78
COG3459	Cellobiose phosphorylase	Carbohydrate transport and metabolism [G]	1.85
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.93 %
All Organisms	root	All Organisms	49.07 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.93 %
cellular organisms	root	All Organisms → cellular organisms	49.07 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.93 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	49.07 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	20.37 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	4.63 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.78 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	14.81 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.70 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2.78 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.93 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.70 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	2.78 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1.85 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	0.93 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.70 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.78 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1.85 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	0.93 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.93 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.93 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.70 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.78 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1.85 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.93 %
Janthinobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Janthinobacterium	0.93 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.70 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.78 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1.85 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.93 %
Janthinobacterium lividum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Janthinobacterium → Janthinobacterium lividum	0.93 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.93 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.70 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.78 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1.85 %
Bradyrhizobium sp. UFLA03-84	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. UFLA03-84	0.93 %
Streptomyces lincolnensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces lincolnensis	0.93 %
Janthinobacterium lividum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Janthinobacterium → Janthinobacterium lividum	0.93 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459006\|GBPF9FW01D2QLV	Not Available	528	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101567837	Not Available	592	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101568499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1720	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101574648	Not Available	975	Open in IMG/M
3300001593\|JGI12635J15846_10063773	All Organisms → cellular organisms → Bacteria	2751	Open in IMG/M
3300001593\|JGI12635J15846_10537141	All Organisms → cellular organisms → Bacteria → Terrabacteria group	686	Open in IMG/M
3300001867\|JGI12627J18819_10339771	Not Available	607	Open in IMG/M
3300002245\|JGIcombinedJ26739_100393106	All Organisms → cellular organisms → Bacteria	1266	Open in IMG/M
3300002245\|JGIcombinedJ26739_100915904	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300002245\|JGIcombinedJ26739_100972256	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300002245\|JGIcombinedJ26739_101502757	Not Available	569	Open in IMG/M
3300003219\|JGI26341J46601_10128456	Not Available	720	Open in IMG/M
3300003368\|JGI26340J50214_10042354	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1295	Open in IMG/M
3300003505\|JGIcombinedJ51221_10016549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2521	Open in IMG/M
3300004080\|Ga0062385_10695519	Not Available	654	Open in IMG/M
3300004092\|Ga0062389_102443228	Not Available	692	Open in IMG/M
3300004635\|Ga0062388_101449780	Not Available	691	Open in IMG/M
3300005186\|Ga0066676_10229263	All Organisms → cellular organisms → Bacteria	1205	Open in IMG/M
3300005437\|Ga0070710_10112344	Not Available	1638	Open in IMG/M
3300005610\|Ga0070763_10622340	Not Available	627	Open in IMG/M
3300005764\|Ga0066903_101828032	Not Available	1161	Open in IMG/M
3300005921\|Ga0070766_10827412	Not Available	632	Open in IMG/M
3300005994\|Ga0066789_10437112	All Organisms → cellular organisms → Bacteria → Proteobacteria	546	Open in IMG/M
3300006163\|Ga0070715_10950857	Not Available	532	Open in IMG/M
3300006173\|Ga0070716_100114000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1680	Open in IMG/M
3300006174\|Ga0075014_100781167	Not Available	562	Open in IMG/M
3300006176\|Ga0070765_101331662	Not Available	677	Open in IMG/M
3300006893\|Ga0073928_10435190	All Organisms → cellular organisms → Bacteria	952	Open in IMG/M
3300006893\|Ga0073928_10579960	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300006893\|Ga0073928_10860016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. UFLA03-84	623	Open in IMG/M
3300009101\|Ga0105247_11344851	Not Available	576	Open in IMG/M
3300009551\|Ga0105238_10642027	Not Available	1071	Open in IMG/M
3300010339\|Ga0074046_10054972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2632	Open in IMG/M
3300010339\|Ga0074046_10284402	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1019	Open in IMG/M
3300010341\|Ga0074045_10042870	All Organisms → cellular organisms → Bacteria	3318	Open in IMG/M
3300010343\|Ga0074044_10131891	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1676	Open in IMG/M
3300010366\|Ga0126379_13089122	Not Available	557	Open in IMG/M
3300010379\|Ga0136449_104480498	Not Available	514	Open in IMG/M
3300010398\|Ga0126383_10758731	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1051	Open in IMG/M
3300010937\|Ga0137776_1249646	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
3300012202\|Ga0137363_11678005	Not Available	528	Open in IMG/M
3300012285\|Ga0137370_10162993	All Organisms → cellular organisms → Bacteria → Proteobacteria	1294	Open in IMG/M
3300012582\|Ga0137358_10449482	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300012955\|Ga0164298_10763126	Not Available	687	Open in IMG/M
3300012971\|Ga0126369_10825569	Not Available	1010	Open in IMG/M
3300012986\|Ga0164304_11079312	Not Available	641	Open in IMG/M
3300014164\|Ga0181532_10361916	Not Available	811	Open in IMG/M
3300017946\|Ga0187879_10162404	All Organisms → cellular organisms → Bacteria	1260	Open in IMG/M
3300019887\|Ga0193729_1153355	Not Available	830	Open in IMG/M
3300020579\|Ga0210407_10152985	Not Available	1779	Open in IMG/M
3300020579\|Ga0210407_10306972	Not Available	1239	Open in IMG/M
3300020580\|Ga0210403_10515889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	970	Open in IMG/M
3300020583\|Ga0210401_10143304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2235	Open in IMG/M
3300021046\|Ga0215015_10334015	All Organisms → cellular organisms → Bacteria	2741	Open in IMG/M
3300021171\|Ga0210405_11340525	Not Available	524	Open in IMG/M
3300021358\|Ga0213873_10085552	Not Available	889	Open in IMG/M
3300021372\|Ga0213877_10002669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3979	Open in IMG/M
3300021374\|Ga0213881_10489649	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	557	Open in IMG/M
3300021401\|Ga0210393_10205954	Not Available	1591	Open in IMG/M
3300021401\|Ga0210393_11661502	Not Available	506	Open in IMG/M
3300021403\|Ga0210397_10110112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1874	Open in IMG/M
3300021404\|Ga0210389_10961461	Not Available	663	Open in IMG/M
3300021406\|Ga0210386_11269134	Not Available	621	Open in IMG/M
3300021407\|Ga0210383_10139660	Not Available	2056	Open in IMG/M
3300021439\|Ga0213879_10002991	All Organisms → cellular organisms → Bacteria	3052	Open in IMG/M
3300021441\|Ga0213871_10107405	Not Available	822	Open in IMG/M
3300021560\|Ga0126371_10332018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1653	Open in IMG/M
3300022512\|Ga0242676_1010998	Not Available	827	Open in IMG/M
3300022557\|Ga0212123_10239676	All Organisms → cellular organisms → Bacteria	1310	Open in IMG/M
3300025915\|Ga0207693_10441183	Not Available	1017	Open in IMG/M
3300026898\|Ga0207788_1016072	Not Available	664	Open in IMG/M
3300026997\|Ga0207784_1010761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	993	Open in IMG/M
3300027003\|Ga0207722_1027125	Not Available	625	Open in IMG/M
3300027537\|Ga0209419_1052939	Not Available	789	Open in IMG/M
3300027583\|Ga0209527_1151070	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	514	Open in IMG/M
3300027610\|Ga0209528_1016977	All Organisms → cellular organisms → Bacteria	1594	Open in IMG/M
3300027660\|Ga0209736_1188245	Not Available	539	Open in IMG/M
3300027667\|Ga0209009_1018865	All Organisms → cellular organisms → Bacteria → Proteobacteria	1669	Open in IMG/M
3300027727\|Ga0209328_10235150	All Organisms → cellular organisms → Bacteria → Proteobacteria	549	Open in IMG/M
3300027812\|Ga0209656_10005501	All Organisms → cellular organisms → Bacteria	8141	Open in IMG/M
3300027812\|Ga0209656_10007198	All Organisms → cellular organisms → Bacteria	7131	Open in IMG/M
3300027812\|Ga0209656_10085570	Not Available	1685	Open in IMG/M
3300027812\|Ga0209656_10098060	Not Available	1544	Open in IMG/M
3300027817\|Ga0209112_10190614	Not Available	702	Open in IMG/M
3300027824\|Ga0209040_10196474	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1050	Open in IMG/M
3300027824\|Ga0209040_10494049	Not Available	545	Open in IMG/M
3300027824\|Ga0209040_10541120	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300027825\|Ga0209039_10091375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces lincolnensis	1316	Open in IMG/M
3300027855\|Ga0209693_10440094	Not Available	627	Open in IMG/M
3300027895\|Ga0209624_10273717	Not Available	1123	Open in IMG/M
3300027908\|Ga0209006_10022111	All Organisms → cellular organisms → Bacteria → Proteobacteria	5765	Open in IMG/M
3300027908\|Ga0209006_10569224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	938	Open in IMG/M
3300028047\|Ga0209526_10254362	Not Available	1201	Open in IMG/M
3300028780\|Ga0302225_10046007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2164	Open in IMG/M
3300029701\|Ga0222748_1006941	Not Available	1363	Open in IMG/M
3300030007\|Ga0311338_10294403	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1796	Open in IMG/M
3300030007\|Ga0311338_11025784	Not Available	798	Open in IMG/M
3300030054\|Ga0302182_10084212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1410	Open in IMG/M
3300030399\|Ga0311353_10185389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Janthinobacterium → Janthinobacterium lividum	1965	Open in IMG/M
3300031708\|Ga0310686_102423358	All Organisms → cellular organisms → Bacteria	8798	Open in IMG/M
3300031754\|Ga0307475_11560690	Not Available	505	Open in IMG/M
3300032160\|Ga0311301_10554756	All Organisms → cellular organisms → Bacteria	1678	Open in IMG/M
3300032160\|Ga0311301_12676654	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300032261\|Ga0306920_101862691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	847	Open in IMG/M
3300032828\|Ga0335080_10181473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2321	Open in IMG/M
3300033158\|Ga0335077_11102073	Not Available	784	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.37%
Host-Associated	Host-Associated	4.63%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.93%
Aquatic	Environmental → Aquatic	19.44%
Plants	Host-Associated → Plants	3.70%
Fungi	Host-Associated → Fungi	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.37%
Freshwater	Environmental → Aquatic → Freshwater	13.89%
Thermal Springs	Environmental → Aquatic → Thermal Springs	4.63%
Peat	Environmental → Terrestrial → Peat	4.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.70%
Sediment	Environmental → Aquatic → Sediment	0.93%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.93%
Mycelium	Host-Associated → Fungi → Mycelium	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.19%
Loam	Environmental → Terrestrial → Soil → Loam	28.70%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	13.89%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.48%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	4.63%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.93%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	25.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.81%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	13.89%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.56%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.63%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.63%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	3.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.70%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.93%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	17.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.96%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	12.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.63%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	4.63%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	3.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.70%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	3.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.70%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.70%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.70%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.78%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.78%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.85%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.93%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.93%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	0.93%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.93%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.93%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459006	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 0-10cm	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010937	Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139	Environmental	Open in IMG/M
3300012181	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ006 MetaG	Host-Associated	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021358	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3	Host-Associated	Open in IMG/M
3300021372	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01	Environmental	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300021441	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1	Host-Associated	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022512	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026898	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 79 (SPAdes)	Environmental	Open in IMG/M
3300026997	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 66 (SPAdes)	Environmental	Open in IMG/M
3300027003	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 26 (SPAdes)	Environmental	Open in IMG/M
3300027537	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027817	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300029701	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
L01_02909340	2170459006	Grass Soil	MTYKDFYAQALLSSLPIAYEVEKDLLHGREPTPENVALGSSQLAMALTELLAKTVQNVPGSNQQI
INPhiseqgaiiFebDRAFT_1015678371	3300000364	Soil	MTYKDFYAKAMLSSLPIAYAVEKDLLQGREPTPENVALGASQLAMALTDLLARTV
INPhiseqgaiiFebDRAFT_1015684992	3300000364	Soil	MTYKDFYAKAMLSSLPIAYAVEKDLLQGREPTPENVALGASQLAMALTDLLAXTVENVADGNAQF*
INPhiseqgaiiFebDRAFT_1015746481	3300000364	Soil	MTYKDFYAQALLSSLPISYAVEKDLVQDREPTPENVALGASQLAMALTDLLAKTAENVPRANLQL*
JGI12635J15846_100637731	3300001593	Forest Soil	MTYKEFYAQAMLSSLPIAYAVEKDLVQGREPTPENVALGASQLAMALTELLAATAENVPGANTQY*
JGI12635J15846_105371411	3300001593	Forest Soil	MTYKDFYAQAMLSSLPIAYAVEKDLLQGREPTPENVAQGASQLAMALTELLAGTVESVPNANAQV*
JGI12627J18819_103397712	3300001867	Forest Soil	MTYKDFYAQALLSSLPISYAVEKDLVHGREPTPENVALGASQLAMALTDLLAKTSQNIPRANLQI*
JGIcombinedJ26739_1003931061	3300002245	Forest Soil	MTYKDFYAQALLSSLPIAYAVEKDLAHGREPNPEHVALGASQLAMALTDVLAKTVENVPGANEQY*
JGIcombinedJ26739_1009159042	3300002245	Forest Soil	MTYKDFYAQAMLSSLSIAYSVEKDLLQGREPTPENVALGASQLAMALTDLLARTIENVADADAQL*
JGIcombinedJ26739_1009722561	3300002245	Forest Soil	MTYKDFYAQALLSSLPIAYAVERDLVQGREPTPENVALGASQLAMALTELLANTIESVPGANTQF*
JGIcombinedJ26739_1015027571	3300002245	Forest Soil	MTYKDFYAQAMLSSLPIAYAVERDLVQGREPTPENVALGASQLAMALTELLADTIENVPSANAEF*
JGI26341J46601_101284561	3300003219	Bog Forest Soil	SSDLRVRFGMTYKEFYAQALLSSLPIAYSVEKDLLEGREPTPENVALGASQLAMALTELLASTINNVPRGDSQY*
JGI26340J50214_100423542	3300003368	Bog Forest Soil	DLRVRFGMTYKEFYAQALLSSLPIAYSVEKDLLQGREPTPENVALGASQLAMALTELLGSTINNVPRGDSRY*
JGIcombinedJ51221_100165494	3300003505	Forest Soil	SSLPISYAVEKDLAHGREPTPENVALGASQLAMALTDLLAKTVLNVPGANEQF*
Ga0062385_106955192	3300004080	Bog Forest Soil	LSSLPIAYAVEKDLVQGREPTPENVALGASQLAMALTELLARTANDVPGADKEY*
Ga0062389_1024432281	3300004092	Bog Forest Soil	LVMTYKDFYAQAMLSSLPIAYAVEKDLVQGREPTPENVALGASQLAMALTELLARTANDVPGADKEY*
Ga0062388_1014497802	3300004635	Bog Forest Soil	VMTYKDFYAQAMLSSLPIAYAVEKDLVQGREPTPENVALGASQLAMALTELLARTANDVPGADKEY*
Ga0066676_102292632	3300005186	Soil	MTYKEFYAQALLSSLPIAYTVEKDLVEGREPRPEHVALCASQLAMALTELLANTVQNVPGGSDQY*
Ga0070710_101123441	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MTYKDFYAQALLSSLPIAYAVEKDLVHGREPTPEDVALGASQLAMALTEMLAKTVQDVPGANQQF*
Ga0070763_106223401	3300005610	Soil	QAMLSSLPIAYAVEKDLMQGREPSPENVAFGASQLAMALTELLAKTIEDVPGANQQY*
Ga0066903_1018280322	3300005764	Tropical Forest Soil	MTYKDFYAQALLSSLPISYAVERDLVHGREPTPENVALGASQLAMALTDLLAKTSQNVPRANLEV*
Ga0070766_108274121	3300005921	Soil	MTYKDFYAQALLSSLPISYAVEKDLAHGREPTPENVALGASQLAMALTDLLAKTVLNVPGANEQF*
Ga0066789_104371121	3300005994	Soil	KDFYAQAMLSSLPIAYAVEKDLLHGREPTPENVAQGASQLAMALTELLAGTVESVPNANAQV*
Ga0070715_109508571	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MTYKDFYAQAMLSSLPIAYTVEKDLLQGREPTPENVALGASQLAMALTDLLTNTIEDVPNGDSQF*
Ga0070716_1001140001	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MTYKDFYAKAMLSSLPIAYAVEKDLLQGREPTPENVALGASQLAMALTDLLARTVENVADGNAQF*
Ga0075014_1007811671	3300006174	Watersheds	MTYKEFYAQALLSSLPIAYAVEKDLSDDREPTPENVALGASQLAMALTDLLAKTVNDLAGANDQL*
Ga0070765_1013316622	3300006176	Soil	MTYKDFYAQAMLSSLPIAYSVERDLVQGREPTPENVALGASQLAMALTELLAGTIENVPSANAEF*
Ga0073928_104351902	3300006893	Iron-Sulfur Acid Spring	MTYKDFYAQALLSSLPISYAVEKDLAHGREPTPENVALGASQLAMALTDLLAKSVLNVPGANEQF*
Ga0073928_105799602	3300006893	Iron-Sulfur Acid Spring	MTYKDFYAQALLSSLPIAYAVEKDLAHGREPNPEHVALGASQLAMALTDMLAETVENVPGANEQF*
Ga0073928_108600162	3300006893	Iron-Sulfur Acid Spring	MTYKDFYAQAMLSSLPIAYAVEKDLLQGREPTPENVAQGASQLAMALTELLAGTVDSVPNANAQV*
Ga0105247_113448511	3300009101	Switchgrass Rhizosphere	KDFYAKAMLSSLPIAYAVEKDLLQGREPTPENVALGASQLAMALTDLLARTVENVADGNAQF*
Ga0105238_106420271	3300009551	Corn Rhizosphere	MTYKDFYAQAILSSLPIAYAVERDLVQGREPTPENVALGASQLAMALTELLAKTVADVPGADTQI*
Ga0074046_100549723	3300010339	Bog Forest Soil	MTYKEFYAQALLSSLPIAYSVEKDLLEGREPTPENVALGASQLAMALTELLASTINNVPRGDSQY*
Ga0074046_102844021	3300010339	Bog Forest Soil	YKEFYAQALLSSLPIAYSVEKDLLQGREPTPENVALGASQLAMALTELLGSTINNVPRGDSRY*
Ga0074045_100428701	3300010341	Bog Forest Soil	FGMTYKEFYAQALLSSLPIAYSVEKDLLQGREPTPENVALGASQLAMALTELLGSTINNVPRGDSRY*
Ga0074044_101318912	3300010343	Bog Forest Soil	MTYKEFYAQALLSSLPIAYSVEKDLLQGREPTPENVALGASQLAMALTELLGSTINNVPRGDSRY*
Ga0126379_130891221	3300010366	Tropical Forest Soil	MTYKDFYAQALLSSLPISYAVERDLVHGREPTPENVALGASQLAMAWTDLLAKTSQNVPRANLEV*
Ga0136449_1044804981	3300010379	Peatlands Soil	MTYKDFYAQAMLSSLPIAYAVERDLVQGREPTPENVALGASQLAMALTELLASTVDSVPGANAQF*
Ga0126383_107587311	3300010398	Tropical Forest Soil	MTYKDFYAQALLSSLPISYAVERDLVHGREPTPENVALGASQLAMALTDLLAKTSLNVPRANLEV*
Ga0137776_12496462	3300010937	Sediment	ALLSSLPVAYSVEKDLLDGREPKPENIALGAAQLAMALTEALASTIESVPRGESQF*
Ga0153922_10222222	3300012181	Attine Ant Fungus Gardens	LALRPQNNPATLDCSAVGLSMTYKDFYAQALLSSLSIAYTVEKDLVQGREPRPENVALCASQLAMALTELLANTVQNVPGANDQY*
Ga0137363_116780051	3300012202	Vadose Zone Soil	QALLSSLPIAYSVEKDLIQDREPRPENVALGASQLAMALTELLASTVRNVPGANEQY*
Ga0137370_101629931	3300012285	Vadose Zone Soil	MTYKDFYAQALLSSLPIAYTVEKDLVQGREPRPENVALGASQLAMALTELLANTIQNIPAANEQF*
Ga0137358_104494822	3300012582	Vadose Zone Soil	MTYKDFYAQALLSSLPISYAVEKDLMQGREPTPENVALGASQLAMALTDLLAKTIENVPDGNEQF*
Ga0164298_107631262	3300012955	Soil	GMTYKDFYAQALLSSLPIAYAVEKDLVHGREPTPEDVALGASQLAMALTEMLAKTVQDVPGANQQF*
Ga0126369_108255691	3300012971	Tropical Forest Soil	MTYKDFYAQALLSSLPISYAVERDLVHGREPTPENVALGASQLAMALTDLLAKTSQNVPRANVEV*
Ga0164304_110793121	3300012986	Soil	MTYKDFYAQAILRSLPIAYAVERDLVQGREPTPENVALGASQLAMALTELLAKTVADVPGADTQI*
Ga0181532_103619162	3300014164	Bog	MNYKEFYAQALLSSLPVAYSVEKDLLNGKEPTPENVALGASQLAMALTELLADTINNVPGDEPR*
Ga0187879_101624042	3300017946	Peatland	MTYKEFYAQALLSSLPVAYSVEKDLLHGREPNPENVALGASQLAMSLTELLAATINNVPGGESHY
Ga0193729_11533552	3300019887	Soil	MTYKDFYAQAMLSSLPIAYAVEKDLLQGREPTPENVAQGASQLAMALTELLAGTVESVPNANAQV
Ga0210407_101529852	3300020579	Soil	MTYKDFYAQAMLSSLPIAYAVEKDLMQGREPTPENVALGASQLAMALTELLASTAENVPGANQQY
Ga0210407_103069722	3300020579	Soil	MTYKDFYAQAMLSSLPIAYAVEKDLMQGREPSPENVAFGASQLAMALTELLAKTIEDVPGANQQY
Ga0210403_105158891	3300020580	Soil	SVRMTYNDFYAQALLSSLPISYAVEKDLAHGREPTPENVALGASQLAMALTDLLAKTVLNVPGANEQF
Ga0210401_101433042	3300020583	Soil	MTYKDFYAQAMLSSLPIAYAVEKDLLQGREPTPENVALGASQLAMALTDLLARTVENVPDANAQI
Ga0215015_103340152	3300021046	Soil	MTYKDFYAQALLSSLPISYAVEKDLAHGREPTPENVALGASQLAMALTDLLAKTVQNVRGANEQF
Ga0210405_113405251	3300021171	Soil	MTYKDFYAQAMLSSLPIAYAVEKDLLQGREPTPENVALGASQLAMALTDLLARTVENVPDANSQI
Ga0213873_100855522	3300021358	Rhizosphere	MTYKDFYAQALLSSLPISYAVERDLVHGREPTPENVALGASQLAMALTDLLAETAENVPRANLQI
Ga0213877_100026695	3300021372	Bulk Soil	MTYKDFYAQALLSSLPISYAVERDLVHGREPTPENVALGASQLAMALTDLLAKSSQNIPRANLQI
Ga0213881_104896492	3300021374	Exposed Rock	MTYKDFYAQALLSSLPIAYAVEKDLVQGPEPTPENVALGASQLAMALTELLANTIESVPGGTTQF
Ga0210393_102059542	3300021401	Soil	MTYKDFYAQAMLSSLPIAYAVEKDLAQGREPTPESVALGASQLAMALTELLAGTAENVPGANNQY
Ga0210393_116615021	3300021401	Soil	MTYKEFYAQALLSSLSIAYAVEKDLLQGREPTPENVALGASQLAMALTDLLAKTAENVPDANVDF
Ga0210397_101101123	3300021403	Soil	MTYKDFYAQALLSSLPISYAVEKDLAHGREPTPENVALGASQLAMALTDLLAKTVLNVPGANEQF
Ga0210389_109614611	3300021404	Soil	EPTFRNVGLVMTYKDFYAQAMLSSLPIAYAVEKDLMQGREPTPENVALGASQLAMALTELLASTAENVPGANQQY
Ga0210386_112691342	3300021406	Soil	MTYKDFYAQALLSSLPISYAVEKDLAHGREPTPENVALGASQLAMALTDLLAKTVLNVPVAN
Ga0210383_101396602	3300021407	Soil	MTYKDFYAQAMLSSLPIAYAVEKDLMQGREPTPENVALGAAQLAMALTELLASTAENVPGANQQY
Ga0213879_100029913	3300021439	Bulk Soil	MTYKEFYAQALLSSLPISYAVERELVHGREPTPENVALGASQLAMALTDLLAKTAENIPRANLEI
Ga0213871_101074051	3300021441	Rhizosphere	QAWFIPHLSVRMTYKDFYAQALLSSLPISYAVERDLVHGREPTPENVALGASQLAMALTDLLAKTAENIPRANLEI
Ga0210409_111111801	3300021559	Soil	ADIPHVGVVMTYKDFYAQAMLSSLPIAYAVEKDLMQGREPSPENVAFGASQLAMALTELLAKTIEDVPGANQQY
Ga0126371_103320181	3300021560	Tropical Forest Soil	MTYKDFYAQALLSSLPISYAVERDLVHGREPTPENVALGASQLAMALTDLLAKTSQNVPRANLEV
Ga0242676_10109981	3300022512	Soil	KDFYAQALLSSLPISYAVEKDLAHGREPTPENVALGASQLAMALTDLLAKTVLNVPGANEQF
Ga0212123_102396762	3300022557	Iron-Sulfur Acid Spring	MTYKDFYAQALLSSLPISYAVEKDLAHGREPTPENVALGASQLAMALTDLLAKSVLNVPGANEQF
Ga0207693_104411832	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MTYKDFYAQAMLSSLPIAYTVEKDLLQGREPTPENVALGASQLAMALTDLLTNTIEDVPNGDSQF
Ga0207788_10160721	3300026898	Tropical Forest Soil	MTYKDFYAQALLSSLPIVYAVEKDLANGREPTPENVALGASQLAMALTDLLA
Ga0207784_10107612	3300026997	Tropical Forest Soil	MTYKDFYAQALLSSLPIVYAVEKDLANGREPTPENVALGASQLAMALTDLLAKTVQNVPGANEHF
Ga0207722_10271252	3300027003	Tropical Forest Soil	MTYKDFYAQALLSSLPIVYAVEKDLANGREPTPENVALGASQLAMALTDLLAK
Ga0209419_10529391	3300027537	Forest Soil	MTYKEFYAQAMLSSLPIAYAVEKDLVQGREPTPENVALGASQLAMALTELLAATAENVPGANTQYYPVARLP
Ga0209527_11510701	3300027583	Forest Soil	MTYKDFYAQALLSSLPIAYAVERDLVQGREPTPENVALGASQLAMALTELLANTIESVPGANTQF
Ga0209528_10169771	3300027610	Forest Soil	MTYKDFYAQALLSSLPIAYAVEKDLAHGREPNPEHVALGASQLAMALTDVLAKTVENVPGANEQY
Ga0209736_11882452	3300027660	Forest Soil	MTYKDFYAQALLSSLPISYAVEKDLAHGREPTPENVALGASQLAMALTDLLAKSVLNVPGANEQY
Ga0209009_10188652	3300027667	Forest Soil	MTYKEFYAQAMLSSLPIAYAVERDLVQGREPTPENVALGASQLAMALTELLAATAENVPGANTQY
Ga0209328_102351501	3300027727	Forest Soil	LDMTYKDFYAQAMLSSLPIAYAVEKDLLQGREPTPENVAQGASQLAMALTELLAGTVESVPNANAQV
Ga0209656_100055018	3300027812	Bog Forest Soil	MTYKEFYAQALLSSLPIAYSVEKDLLQGREPTPENVALGASQLAMALTELLGSTINNVPRGDSRY
Ga0209656_100071987	3300027812	Bog Forest Soil	MTYKEFYAQALLSSLPIAYSVEKDLLEGREPTPENVALGASQLAMALTELLASTINNVPRGDSQY
Ga0209656_100855703	3300027812	Bog Forest Soil	VRMTYKDFYAQALLSSLPISYAVEKDLAHGREPTPENVALGASQLAMALTDLLAKTVQNVPDANEPF
Ga0209656_100980601	3300027812	Bog Forest Soil	MTYKDFYAQALLSSLPISYAVEKDLAHGREPTPENVALGASQLAMALTDLLAKTVQNVPSANEQF
Ga0209112_101906142	3300027817	Forest Soil	AMLSSISIAYAVEKDLLQGREPTPESVALGASQLAMALTDLLAKTAENVPEANVDF
Ga0209040_101964741	3300027824	Bog Forest Soil	DLRVRFGMTYKEFYAQALLSSLPIAYSVEKDLLQGREPTPENVALGASQLAMALTELLGSTINNVPRGDSRY
Ga0209040_104940491	3300027824	Bog Forest Soil	DLRVRFGMTYKEFYAQALLSSLPIAYSVEKDLLEGREPTPENVALGASQLAMALTELLASTINNVPRGDSQY
Ga0209040_105411202	3300027824	Bog Forest Soil	FYAQALLSSLPISYAVEKDLAHGREPTPENVALGASQLAMALTDLLAKTVQNVPSANEQF
Ga0209039_100913752	3300027825	Bog Forest Soil	MTYKDFYAQALLSSLPISYAVEKDLAHGREPTPENVALGASQLAMALTDLLAKTIQNVPGGSQEF
Ga0209693_104400943	3300027855	Soil	QAMLSSLPIAYAVEKDLMQGREPSPENVAFGASQLAMALTELLAKTIEDVPGANQQY
Ga0209624_102737171	3300027895	Forest Soil	MTYKEFYAQAMLSSISIAYAVERDLLQGREPTPENVALGASQLAMALTDLLAKTAENVPDANVDF
Ga0209006_100221114	3300027908	Forest Soil	MTYKDFYAQAMLSSLPIAYAVEKDLIQGREPSPENVALGASQLAMALTELLKATAENVPGANTQY
Ga0209006_105692241	3300027908	Forest Soil	MTYKDFYAQAMLSSLPIAYAVEKDLLQGREPTPENVALGASQLAMALTDLLTKTIEDVPNGDSQF
Ga0209526_102543622	3300028047	Forest Soil	MTYKDFYAQALLSSLPIAYAVEKDLAHGREPTPENVALGASQLAMALTDLLAKTVLNVPGANEQF
Ga0302225_100460072	3300028780	Palsa	MTYKDFYAQAMLSSLPIAYAVEKDLLQGREPSPENVALGASQLAMALTDLLASTVENVPDANAQF
Ga0222748_10069411	3300029701	Soil	YAQAMLSSLPIAYAVEKDLMQGREPSPENVAFGASQLAMALTELLAKTIEDVPGANQQY
Ga0311338_102944032	3300030007	Palsa	MTYKEFYAQAMLSSISIAYAVEKDLLQGREPTPENVALGASQLAMALTDLLAKTAENVPDANMDF
Ga0311338_110257842	3300030007	Palsa	MTYKEFYAQAMLSSLSIAYAVEKDLLQGREPTPENVASGASQLAMALTDLLARTAENVPNANVDF
Ga0302182_100842121	3300030054	Palsa	MTYKDFYAQAMLISLPIAYAVEKDLLQGREPSPENVALGASQLAMALTDLLASTVENVPDANAQF
Ga0311353_101853891	3300030399	Palsa	MTYKEFYAQAMLSSISIAYAVEKDLLQGREPTPENVALGASQLAMALTDLLAKTAENVPDANMNF
Ga0310686_1024233584	3300031708	Soil	MTYKEFYAQALLSSLPVAYSVEKDLLNGREPNPENVASGASQLAMTLTELLAATINNVPDGESHY
Ga0307475_115606902	3300031754	Hardwood Forest Soil	MTYKDFYAQALLSSLSIAYTVEKDLVQGREPRPENVALCASQLAMALTELLANTVQ
Ga0311301_105547563	3300032160	Peatlands Soil	MTYKDFYAQAMLSSLPIAYAVERDLVQGREPTPENVALGASQLAMALTELLASTVDSVPGANAQF
Ga0311301_126766542	3300032160	Peatlands Soil	MTYKDFYAQALLSSLPISYAVEKDLAHGREPTPENVALGASQLAMALTDLLAKTVQNVPGANEQF
Ga0306920_1018626911	3300032261	Soil	MTYKDFYAQALLSSLPISYAVERDLVHGREPTPENVALGASQLAMALTDLLAKTAENIPRANL
Ga0335080_101814735	3300032828	Soil	MTYKEFYAQALLSSLPISYAVEKDLVQGREPTPENVALGASQLAVALTELLAKTSQNVPHADMQV
Ga0335077_111020731	3300033158	Soil	IHLITFAPEPTAFKFGMTYKEFYAQALLSSLPISYAVEKDLVQGREPTPENVALGASQLAVALTELLAKTSQNVPHADMQV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090899

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences