Metagenome Family F090851

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090851
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	49 residues
Representative Sequence	ISTIRSLITSKNKISVKNFFFKQILNYFILTLLDNVIRLNMKTIYRFHKK
Number of Associated Samples	54
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	97.22 %
% of genes from short scaffolds (< 2000 bps)	96.30 %
Associated GOLD sequencing projects	36
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (51.852 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (60.185 % of family members)
Environment Ontology (ENVO)	Unclassified (95.370 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (100.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 78.00% β-sheet: 0.00% Coil/Unstructured: 22.00%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF07750	GcrA	100.00

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG5352	Uncharacterized conserved protein	Function unknown [S]	100.00

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.85 %
All Organisms	root	All Organisms	48.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.85 %
cellular organisms	root	All Organisms → cellular organisms	48.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.85 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	48.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.85 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	46.30 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.85 %
Pelagibacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	36.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.85 %
Pelagibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	28.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.85 %
Candidatus Pelagibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	28.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.85 %
Candidatus Pelagibacter ubique	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	6.48 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001117\|JGI11785J13272_1020088	Not Available	740	Open in IMG/M
3300001117\|JGI11785J13272_1021053	Not Available	716	Open in IMG/M
3300005398\|Ga0066858_10106108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	819	Open in IMG/M
3300005398\|Ga0066858_10185757	Not Available	599	Open in IMG/M
3300005398\|Ga0066858_10233208	Not Available	528	Open in IMG/M
3300005398\|Ga0066858_10256716	Not Available	500	Open in IMG/M
3300005400\|Ga0066867_10055521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1542	Open in IMG/M
3300005401\|Ga0066857_10218505	Not Available	676	Open in IMG/M
3300005408\|Ga0066848_10089509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	839	Open in IMG/M
3300005408\|Ga0066848_10102612	Not Available	778	Open in IMG/M
3300005408\|Ga0066848_10104021	All Organisms → cellular organisms → Bacteria → Proteobacteria	772	Open in IMG/M
3300005408\|Ga0066848_10145459	Not Available	640	Open in IMG/M
3300005422\|Ga0066829_10130550	Not Available	749	Open in IMG/M
3300005423\|Ga0066828_10288581	Not Available	528	Open in IMG/M
3300005424\|Ga0066826_10200617	Not Available	689	Open in IMG/M
3300005426\|Ga0066847_10151367	Not Available	716	Open in IMG/M
3300005426\|Ga0066847_10165321	Not Available	681	Open in IMG/M
3300005427\|Ga0066851_10039701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1637	Open in IMG/M
3300005427\|Ga0066851_10233095	Not Available	575	Open in IMG/M
3300005428\|Ga0066863_10163120	Not Available	797	Open in IMG/M
3300005428\|Ga0066863_10274666	Not Available	587	Open in IMG/M
3300005429\|Ga0066846_10108832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	954	Open in IMG/M
3300005431\|Ga0066854_10335412	Not Available	511	Open in IMG/M
3300005508\|Ga0066868_10083369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1008	Open in IMG/M
3300005508\|Ga0066868_10084249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1002	Open in IMG/M
3300005508\|Ga0066868_10120868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	818	Open in IMG/M
3300005508\|Ga0066868_10127636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	793	Open in IMG/M
3300005514\|Ga0066866_10176596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	755	Open in IMG/M
3300005520\|Ga0066864_10142980	Not Available	688	Open in IMG/M
3300005592\|Ga0066838_10040523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1331	Open in IMG/M
3300005592\|Ga0066838_10097913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	829	Open in IMG/M
3300005593\|Ga0066837_10072917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1281	Open in IMG/M
3300005593\|Ga0066837_10347733	Not Available	517	Open in IMG/M
3300005603\|Ga0066853_10166312	Not Available	740	Open in IMG/M
3300005603\|Ga0066853_10169442	Not Available	732	Open in IMG/M
3300005603\|Ga0066853_10170249	Not Available	730	Open in IMG/M
3300005603\|Ga0066853_10176911	Not Available	714	Open in IMG/M
3300005604\|Ga0066852_10160522	All Organisms → cellular organisms → Bacteria → Proteobacteria	784	Open in IMG/M
3300005604\|Ga0066852_10221010	Not Available	647	Open in IMG/M
3300006166\|Ga0066836_10368256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	864	Open in IMG/M
3300012950\|Ga0163108_10210285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1248	Open in IMG/M
3300012950\|Ga0163108_10222085	Not Available	1212	Open in IMG/M
3300012950\|Ga0163108_10228427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1195	Open in IMG/M
3300012950\|Ga0163108_10656048	Not Available	678	Open in IMG/M
3300012950\|Ga0163108_10844731	Not Available	592	Open in IMG/M
3300012950\|Ga0163108_11115496	Not Available	508	Open in IMG/M
3300020262\|Ga0211537_1055792	Not Available	715	Open in IMG/M
3300020295\|Ga0211530_1027495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1043	Open in IMG/M
3300020295\|Ga0211530_1030008	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	981	Open in IMG/M
3300020295\|Ga0211530_1037733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	838	Open in IMG/M
3300020295\|Ga0211530_1066625	Not Available	576	Open in IMG/M
3300020300\|Ga0211662_1041286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	792	Open in IMG/M
3300020330\|Ga0211572_1046524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1118	Open in IMG/M
3300020330\|Ga0211572_1131338	Not Available	559	Open in IMG/M
3300020333\|Ga0211661_1080538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	809	Open in IMG/M
3300020338\|Ga0211571_1091650	Not Available	715	Open in IMG/M
3300020361\|Ga0211531_1055085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1127	Open in IMG/M
3300020361\|Ga0211531_1075915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	926	Open in IMG/M
3300020361\|Ga0211531_1122374	Not Available	696	Open in IMG/M
3300020364\|Ga0211538_1140223	Not Available	702	Open in IMG/M
3300020364\|Ga0211538_1235850	Not Available	511	Open in IMG/M
3300020373\|Ga0211660_10053992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1700	Open in IMG/M
3300020373\|Ga0211660_10205966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	678	Open in IMG/M
3300020383\|Ga0211646_10049869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1594	Open in IMG/M
3300020423\|Ga0211525_10097623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1314	Open in IMG/M
3300020423\|Ga0211525_10443494	Not Available	526	Open in IMG/M
3300020449\|Ga0211642_10095601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1287	Open in IMG/M
3300020449\|Ga0211642_10205429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	849	Open in IMG/M
3300022225\|Ga0187833_10198601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	1180	Open in IMG/M
3300022225\|Ga0187833_10587061	Not Available	556	Open in IMG/M
3300022225\|Ga0187833_10653167	Not Available	514	Open in IMG/M
3300022227\|Ga0187827_10105337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2077	Open in IMG/M
3300022227\|Ga0187827_10197616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	1369	Open in IMG/M
3300022227\|Ga0187827_10217332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	1285	Open in IMG/M
3300022227\|Ga0187827_10227394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1247	Open in IMG/M
3300022227\|Ga0187827_10269186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	1113	Open in IMG/M
3300025265\|Ga0208467_1029466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	947	Open in IMG/M
3300025265\|Ga0208467_1039820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	756	Open in IMG/M
3300025776\|Ga0208699_1019902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	875	Open in IMG/M
3300025776\|Ga0208699_1022662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	803	Open in IMG/M
3300026188\|Ga0208274_1083282	Not Available	767	Open in IMG/M
3300026192\|Ga0207986_1034701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1283	Open in IMG/M
3300026192\|Ga0207986_1038745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	1192	Open in IMG/M
3300026192\|Ga0207986_1039314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	1180	Open in IMG/M
3300026192\|Ga0207986_1040610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	1154	Open in IMG/M
3300026200\|Ga0208894_1060071	Not Available	1157	Open in IMG/M
3300026205\|Ga0208406_1141248	Not Available	545	Open in IMG/M
3300026206\|Ga0207988_1078484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	780	Open in IMG/M
3300026206\|Ga0207988_1085390	Not Available	739	Open in IMG/M
3300026206\|Ga0207988_1091536	Not Available	707	Open in IMG/M
3300026209\|Ga0207989_1128758	Not Available	607	Open in IMG/M
3300026211\|Ga0208132_1048711	Not Available	1033	Open in IMG/M
3300026212\|Ga0208409_1043704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	1144	Open in IMG/M
3300026254\|Ga0208522_1087158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	874	Open in IMG/M
3300026254\|Ga0208522_1104712	Not Available	762	Open in IMG/M
3300026254\|Ga0208522_1147388	Not Available	596	Open in IMG/M
3300026256\|Ga0208639_1086363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	793	Open in IMG/M
3300026259\|Ga0208896_1127570	Not Available	693	Open in IMG/M
3300026261\|Ga0208524_1072875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	953	Open in IMG/M
3300026261\|Ga0208524_1125534	Not Available	664	Open in IMG/M
3300026263\|Ga0207992_1148375	Not Available	588	Open in IMG/M
3300026265\|Ga0208765_1035433	Not Available	1536	Open in IMG/M
3300026267\|Ga0208278_1066460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	860	Open in IMG/M
3300026267\|Ga0208278_1093215	Not Available	693	Open in IMG/M
3300026267\|Ga0208278_1118352	Not Available	595	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	78.70%
Unclassified	Environmental → Aquatic → Marine → Unclassified	21.30%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	73.15%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	21.30%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	5.56%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	60.19%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	21.30%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	7.41%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	5.56%
Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater	5.56%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001117	Marine microbial communities from the Deep Pacific Ocean - MP2098	Environmental	Open in IMG/M
3300005398	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV201	Environmental	Open in IMG/M
3300005400	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261	Environmental	Open in IMG/M
3300005401	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV203	Environmental	Open in IMG/M
3300005408	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV72	Environmental	Open in IMG/M
3300005422	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV43	Environmental	Open in IMG/M
3300005423	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV47	Environmental	Open in IMG/M
3300005424	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV49	Environmental	Open in IMG/M
3300005426	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV74	Environmental	Open in IMG/M
3300005427	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65	Environmental	Open in IMG/M
3300005428	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV253	Environmental	Open in IMG/M
3300005429	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV76	Environmental	Open in IMG/M
3300005431	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV75	Environmental	Open in IMG/M
3300005508	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV259	Environmental	Open in IMG/M
3300005514	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV263	Environmental	Open in IMG/M
3300005520	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV251	Environmental	Open in IMG/M
3300005592	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV89	Environmental	Open in IMG/M
3300005593	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV86	Environmental	Open in IMG/M
3300005603	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV61	Environmental	Open in IMG/M
3300005604	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV63	Environmental	Open in IMG/M
3300006166	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV91	Environmental	Open in IMG/M
3300012950	Marine microbial communities from the Central Pacific Ocean - Fk160115 155m metaG	Environmental	Open in IMG/M
3300020262	Marine microbial communities from Tara Oceans - TARA_B100000097 (ERX556100-ERR599172)	Environmental	Open in IMG/M
3300020295	Marine microbial communities from Tara Oceans - TARA_B100000071 (ERX555980-ERR599109)	Environmental	Open in IMG/M
3300020300	Marine microbial communities from Tara Oceans - TARA_B100000959 (ERX555977-ERR598981)	Environmental	Open in IMG/M
3300020330	Marine microbial communities from Tara Oceans - TARA_B100001964 (ERX556097-ERR599147)	Environmental	Open in IMG/M
3300020333	Marine microbial communities from Tara Oceans - TARA_B100000959 (ERX556081-ERR598953)	Environmental	Open in IMG/M
3300020338	Marine microbial communities from Tara Oceans - TARA_B100001964 (ERX555920-ERR599099)	Environmental	Open in IMG/M
3300020361	Marine microbial communities from Tara Oceans - TARA_B100000071 (ERX556078-ERR599167)	Environmental	Open in IMG/M
3300020364	Marine microbial communities from Tara Oceans - TARA_B100000097 (ERX556021-ERR599037)	Environmental	Open in IMG/M
3300020373	Marine microbial communities from Tara Oceans - TARA_B100000959 (ERX555949-ERR598946)	Environmental	Open in IMG/M
3300020383	Marine microbial communities from Tara Oceans - TARA_B100000929 (ERX556043-ERR598971)	Environmental	Open in IMG/M
3300020423	Marine microbial communities from Tara Oceans - TARA_B100000315 (ERX556027-ERR599062)	Environmental	Open in IMG/M
3300020449	Marine microbial communities from Tara Oceans - TARA_B100001079 (ERX556008-ERR599020)	Environmental	Open in IMG/M
3300020467	Marine microbial communities from Tara Oceans - TARA_B100000945 (ERX555966-ERR598957)	Environmental	Open in IMG/M
3300022225	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_400_PacBio MetaG (Illumina Assembly)	Environmental	Open in IMG/M
3300022227	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)	Environmental	Open in IMG/M
3300025265	Marine microbial communities from the Deep Pacific Ocean - MP2098 (SPAdes)	Environmental	Open in IMG/M
3300025776	Marine microbial communities from the Deep Pacific Ocean - MP2097 (SPAdes)	Environmental	Open in IMG/M
3300026188	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV43 (SPAdes)	Environmental	Open in IMG/M
3300026192	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV89 (SPAdes)	Environmental	Open in IMG/M
3300026200	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV49 (SPAdes)	Environmental	Open in IMG/M
3300026205	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF89A (SPAdes)	Environmental	Open in IMG/M
3300026206	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV74 (SPAdes)	Environmental	Open in IMG/M
3300026209	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65 (SPAdes)	Environmental	Open in IMG/M
3300026211	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV199 (SPAdes)	Environmental	Open in IMG/M
3300026212	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV201 (SPAdes)	Environmental	Open in IMG/M
3300026254	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV86 (SPAdes)	Environmental	Open in IMG/M
3300026256	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV76 (SPAdes)	Environmental	Open in IMG/M
3300026259	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV63 (SPAdes)	Environmental	Open in IMG/M
3300026261	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV61 (SPAdes)	Environmental	Open in IMG/M
3300026263	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV255 (SPAdes)	Environmental	Open in IMG/M
3300026265	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV203 (SPAdes)	Environmental	Open in IMG/M
3300026267	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV259 (SPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11785J13272_10200882	3300001117	Deep Ocean	LYFLLISTIRSLITSKNKISVKNFFFKQILGYFILTPLDNVIRLNIKTRYRFHKK*
JGI11785J13272_10210532	3300001117	Deep Ocean	LYFLLISTIRSLITSKNKISVKNFFFKQILDYFILTLLDNVIRLNMNAIYRFHKK*
Ga0066858_101061083	3300005398	Marine	ITSKNKISVKNFFFKQILDYFILTLLDNVIRLNMKAIYRFHKK*
Ga0066858_101857572	3300005398	Marine	YFLLISTIRSLITSKNKISVKNFFFKQILNYFILILLDNVIRLNMKTIYRFHKK*
Ga0066858_102332082	3300005398	Marine	NKISVKNFFFKQILNYFILTLLDNVIRLNMKTIYRFHKK*
Ga0066858_102567161	3300005398	Marine	TSKNKISVKNFFFKQILDYFILTPLDNVIRLNMKAIYRFHKK*
Ga0066867_100555214	3300005400	Marine	ISTIRSLITSKNKISVKNFFFKQILNYFILTLLDNVIRLSMKAIYRFHKR*
Ga0066857_102185051	3300005401	Marine	STIRSLITSKNKISVKNFFFKQILDYFILTPLDNVIRLNIKTRYRFNRIWRGTIKR*
Ga0066848_100895093	3300005408	Marine	ISTIRSLITSKNKISVKNFFFKQILDYFILTLLDNVIRLNMKAIYRFHKK*
Ga0066848_101026121	3300005408	Marine	LLISTIRSLITSKNKISVKNFFFKQILNYFILTLLDNVIRLNMKTIYRFHKK*
Ga0066848_101040211	3300005408	Marine	SKNKISVKNFFFKQILDYFILTLLDNVIRLNMKTTYRFNRK*
Ga0066848_101454591	3300005408	Marine	KNKISVKNFFFKQILNYFILTLLDNVIRLNMKTIYRFHKK*
Ga0066829_101305501	3300005422	Marine	SKNKISVKNFFFKQILNYFILTLLDNVIRLNMKTIYRFHKK*
Ga0066828_102885812	3300005423	Marine	LYFLLISTIRSLITSKNKISVKNFFFKQILDYFILTPLDNVIRLNIKTRYRFNRIWRGTIKR*
Ga0066826_102006172	3300005424	Marine	SLITSKNKISVKNFFFKQILDYFILTPLDNVIRLNMKAIYRFHKK*
Ga0066847_101513672	3300005426	Marine	TSKNKISVKNFFFKQILDYFILTLLDNVIRLNMKTTYRFNRK*
Ga0066847_101551822	3300005426	Marine	SLITSKNKISVKNFFFKQILDYFILTPLDNVIRLNIKTRYRFNKIWRGTIKR*
Ga0066847_101653211	3300005426	Marine	ITSKNKISVKNFFFKQILNYFILTLLDNVIRLNMKTIYRFHKK*
Ga0066851_100397011	3300005427	Marine	LYFLLISTIRSLITSKNKISVKNFFFKQILDYFILTLLDNVIRLNMKAIYRFHKK*
Ga0066851_102330952	3300005427	Marine	ISTIRSLIASKNKISVKNFFFRQILNYFILTLLDSVIRLKMKTIYRFHKK*
Ga0066863_101631201	3300005428	Marine	LISTIRSLITSKNKISVKNFFFKQILNYFILTLLDNVIRLNMKTIYRFHKK*
Ga0066863_102746661	3300005428	Marine	LYFLLISTIRSLITSKNKISVKNFFFKQILNYFILTLLDNVIRLNIETIYGSRKK*
Ga0066846_101088323	3300005429	Marine	ILYFLLISTIRSLITSKNKISVKNFFFKQILDYFILTLLDNVIRLNMKAIYRFHKK*
Ga0066854_103354122	3300005431	Marine	IRSLITSKNKISVKNFFFKQILDYFILTLLDNVIRLNMNAIYRFHKK*
Ga0066868_100833693	3300005508	Marine	SLITSKNKISVKNFFFKQILDYFILTPLDNVIRLNIETRYSYHKK*
Ga0066868_100842493	3300005508	Marine	ITSKNKISVKNFFFKQILNYFILTLLDNVIRLNIETIYGSRKK*
Ga0066868_101208683	3300005508	Marine	STIRSLITSKNKISVKNFFFKQILDYFILTPLDNVIRLNIKTRYRFNKIWRGTIKR*
Ga0066868_101276361	3300005508	Marine	KNKISVKNFFFKQILNYFILTLLDNVILLNMETIYGSRKKK*
Ga0066866_101765963	3300005514	Marine	TSKNKISVKNFFFKQILNYFILTLLDNVIRLNMKTIYRFHKK*
Ga0066864_101429801	3300005520	Marine	SLITSKNKISVKNFFFKQILNYFILTLLDNVIRLNMKTIYRFDKK*
Ga0066838_100405234	3300005592	Marine	YFLLISTIRSLITSKNKISVKNFFFKQILDYFILTLLDNVIRLNMKTTYRFNRK*
Ga0066838_100979131	3300005592	Marine	IRSLITSKNKISVKNFFFKQILDYFILTLLDNVIRLNMKAIYRFHKK*
Ga0066837_100729174	3300005593	Marine	TIRSLITSKNKISVKNFFFKQILNYFILTLLDNVIRLNIETIYGSRKK*
Ga0066837_103477331	3300005593	Marine	STIRSLITSKNKISVKNFFFKQILNYFILTPLDNVIRLNMKATYRFHKK*
Ga0066853_101663122	3300005603	Marine	ILYFLLISTIRSLITSKNKISVKNFFFKQILNYFILTLLDNVIRLNMETIYGSRKK*
Ga0066853_101694422	3300005603	Marine	YFLLISTIRSLITSKNKISVKNFFFKQILNYFILTLLDNVIRLSMKAIYRFHKR*
Ga0066853_101702491	3300005603	Marine	ILYFLLISTIRSLITSKNKISVKNFFFKQILNYFILTLLDNVIRLNMKTIYRFDKK*
Ga0066853_101769111	3300005603	Marine	IRSLITSKNKISVKNFFFKQILNYFILTLLDNVIRLNMKAIYRFYKK*
Ga0066852_101605221	3300005604	Marine	KISVKNFFFKQILSYFILMLLDNVICLSIKAIYRFHKK*
Ga0066852_102210101	3300005604	Marine	LITSKNKISVKNFFFKQILNYFILTLLDNVIRLNMKAIYRFYKK*
Ga0066836_103682563	3300006166	Marine	LLISTIRSLITSKNKISVKNFFFKQITSYFILTLLDNVIRLNIKTKYRFIRK*
Ga0163108_102102854	3300012950	Seawater	LISTIRSLITSKNKISVKNFFFKQILNYFILTLLDNVIRLNMKTIYGFHKK*
Ga0163108_102220851	3300012950	Seawater	IRSLITSKNKISVKNFFFKQILNYFILTLLDNVIRLNMKTIYRFHKK*
Ga0163108_102284274	3300012950	Seawater	ITSKNKISVKNFFFKQILDYFILTPLDNVIRLNMKAIYRFHKK*
Ga0163108_106560481	3300012950	Seawater	KISVKNFFFKQILNYFILTLLDNVIRLNMKTIYRFDKK*
Ga0163108_108447311	3300012950	Seawater	ILYFLLISTIRSLITSKNKISVKNFFFKQILNYFILTLLDNVIRLNIETIYGSRKK*
Ga0163108_111154961	3300012950	Seawater	IRSLITSKNKISVKNFFFKQILNYFILTLLDNVIRLNMETIYRSRKK*
Ga0211537_10557921	3300020262	Marine	ISTIRSLITSKNKISVKNFFFKQILDYFILTPLDNVIRLNIKTRYRFNKIWRGTIKR
Ga0211530_10274953	3300020295	Marine	ISTIRSLITSKNKISVKNFFFKQILDYFILTPLDNVIRLNIKTRYRFNRIWRGTIKR
Ga0211530_10300081	3300020295	Marine	RSLITSKNKISVKNFFFKQILDYFILTPLDNVIRLNMKAIYRFHKK
Ga0211530_10377331	3300020295	Marine	YFLLISTIRSLIASKNKISVKNFFFKQILNYFILTLLDNVILLNMETIYGSRKKK
Ga0211530_10666252	3300020295	Marine	LISTIRSLITSKNKISVKNFFLKQILDYFILIPLDNVIRLNIKTRYRFHKK
Ga0211662_10412863	3300020300	Marine	RSLITSKNKISVKNFFFKQILDYFILTLLDNVIRLNMKAIYRFHKK
Ga0211572_10465243	3300020330	Marine	YFLLISTIRSLITSKNKISVKNFFFKQILNYFVLTLLDNVILLNMETIYRFRKK
Ga0211572_11313381	3300020330	Marine	YFLLISTIRSLITSKNKISVKNFFFKQILDYFILTLLDNVIRLNMKAIYRFHKK
Ga0211661_10805383	3300020333	Marine	LITSKNKISVKNFFFKQILDYFILTPLDNVIRLNMKAIYRFHKK
Ga0211571_10916502	3300020338	Marine	YFLLISTIRSLITSKNKISVKNFFFKQILDYFILTPLDNVIRLNMKAIYRFHKK
Ga0211531_10550851	3300020361	Marine	SVKNFFFKQILDYFILTPLDNVIRLNMKAIYRFHKK
Ga0211531_10759153	3300020361	Marine	ISTIRSLITSKNKISVKNFFFKQILDYFILTLLDNVIRLNMKAIYRFHKK
Ga0211531_11223742	3300020361	Marine	ITSKNKISVKNFFFKQILNYFILTLLDNVIRLNMKTIYRFDKK
Ga0211538_11402232	3300020364	Marine	LITSKNKISVKNFFFKQILNYFILTPLDNVIRLNMKATYRFHKK
Ga0211538_12358501	3300020364	Marine	LITSKNKISVKNFFFKQILNYFILTLLDNVIRLNMETIYRSRKK
Ga0211660_100539921	3300020373	Marine	YFLLISTIRSLITSKNKISVKNFFFKQILDYFILTPLDNVIRLNIKTRYRFNRIWRGTIK
Ga0211660_102059661	3300020373	Marine	LISTIRSLITSKNKISVKNFFFKQILNYFILTPLDNVISLNIKTRYSFRKK
Ga0211646_100498691	3300020383	Marine	YFLLISTIRSLITSKNKISVKNFFFKQILNYFILTLLDNVIRLSMKAIYRFHKR
Ga0211525_100976234	3300020423	Marine	ISTIRSLITSKNKISVKNFFFKQILDYFILTPLDNVIRLNIKTRYRFHKK
Ga0211525_104434942	3300020423	Marine	ISTIRSLITSKNKISVKNFFFKQILNYFVLTLLDNVIRLSMKAIYRFHKK
Ga0211642_100956014	3300020449	Marine	FLLISTIRSLITSKNKISVKNFFFKQILNYFVLTLLDNVILLNMETIYRFRKK
Ga0211642_102054293	3300020449	Marine	LITSKNKISVKNFFFKQILNYFILTLLDNVIRLNIETIYGSRKK
Ga0211713_104774152	3300020467	Marine	PILYFLVISTIRSLITSKNKFSVKNFFLEQNCNYFVFTLLNNVINYNMKTICSFQLK
Ga0187833_101986013	3300022225	Seawater	YFLLISTIRSLITSKNKISVKNFFFKQILNYFILTPLDNVIRLNMKATYRFHKK
Ga0187833_105870611	3300022225	Seawater	LISTIRSLITSKNKISVKNFFFKQILDYFILTLLDNVIRLNIKTRYRFHKK
Ga0187833_106531672	3300022225	Seawater	SVKNFFFKQILNYFILTLLDNVIRLNMETIYGSRKK
Ga0187827_101053374	3300022227	Seawater	ISTIRSLITSKNKISVKNFFFKQILNYFILTLLDNVIRLNMKAIYRFYKK
Ga0187827_101976161	3300022227	Seawater	LLISTIRSLITSKNKISVKNFFFKQILNYFILTLLDNVIRLNMKTIYRFDKK
Ga0187827_102173324	3300022227	Seawater	ITSKNKISVKNFFFKQILDYFILTLLDNVIRLNMNAIYRFHKK
Ga0187827_102273944	3300022227	Seawater	ISTIRSLITSKNKISVKNFFFKQILNYFILTLLDNVIRLNMKTIYRFHKK
Ga0187827_102691861	3300022227	Seawater	LLISTIRSLITSKNKISVKNFFFKQILNYFILTPLDNVILLNIKTIYRFNRIWRGTVKE
Ga0208467_10294661	3300025265	Deep Ocean	IRSLITSKNKISVKNFFFKQILNYFILTLLDNVIRLNIETIYGSRKK
Ga0208467_10398203	3300025265	Deep Ocean	KNKISVKNFFFKQILDYFILTLLDNVIRLNMKTTYRFNRK
Ga0208699_10199023	3300025776	Deep Ocean	FLLISTIRSLITSKNKISVKNFFFKQILDYFILTPLDNVIRLNIKTRYRFNKIWRGTIKR
Ga0208699_10226623	3300025776	Deep Ocean	LLISTIRSLIASKNKISVKNFFFKQILNYFILTLLDNVILLNMETIYGSRKKK
Ga0208274_10832822	3300026188	Marine	LISTIRSLITSKNKISVKNFFFKQILDYFILTPLDNVIRLNIKTRYRFNKIWRGTIKR
Ga0207986_10347011	3300026192	Marine	LLISTIRSLITSKNKISVKNFFFKQILDYFILTLLDNVIRLNMKTTYRFNRK
Ga0207986_10387451	3300026192	Marine	LYFLLISTIRSLITSKNKISVKNFFFKQILNYFILTLLDNVIRLNIETIYGSRKK
Ga0207986_10393143	3300026192	Marine	YFLLISTIRSLITSKNKISVKNFFFKQILDYFILILLDNVIRLNMKAIYRFHKK
Ga0207986_10406101	3300026192	Marine	IRSLITLKNKISVKNFFFKQILDYFILTLLDNVIRLNMNAIYRFHKK
Ga0208894_10600711	3300026200	Marine	NHTYSLITSKNKISVKNFFFKQILDYFILTPLDNVIRLNMKAIYRFHKK
Ga0208406_11412482	3300026205	Marine	ISTIRSLITSKNKISVKNFFFKQILDYFILTLLDNVIRLNMNAIYRFHKK
Ga0207988_10784843	3300026206	Marine	ITSKNKISVKNFFFKQILDYFILTLLDNVIRLNMKAIYRFHKK
Ga0207988_10853901	3300026206	Marine	ITSKNKISVKNFFFKQILDYFILTLLDNVIRLNMKTTYRFNRK
Ga0207988_10915361	3300026206	Marine	ITSKNKISVKNFFFKQILDYFILTPLDNVIRLNMKAIYRFHKK
Ga0207989_11287582	3300026209	Marine	LLISTIRSLITSKNKISVKNFFFKQILDYFILTPLDNVIRLNMKAIYRFHKK
Ga0208132_10487111	3300026211	Marine	RSLITSKNKISVKNFFFKQILNYFVLTLLDNVILLNMETIYRFRKK
Ga0208409_10437043	3300026212	Marine	YFLLISTIRSFITSKNKISVKNFFFKQILNYFILTLLDNVIRLNMKTIYRFHKK
Ga0208522_10871583	3300026254	Marine	LISTIRSLITSKNKISVKNFFFKQILDYFILTLLDNVIRLNMKAIYRFHKK
Ga0208522_11047121	3300026254	Marine	LISTIRSLITSKNKISVKNFFFKQILDYFILTPLDNVIRLNMKAIYRFHKK
Ga0208522_11473881	3300026254	Marine	STIRSLITSKNKISVKNFFFKQILNYFILTPLDNVIRLNMKATYRFHKK
Ga0208639_10863631	3300026256	Marine	LISTIRSLITSKNKISVKNFFFKQILDYFILTPLDNVIRLNIETRYRFNRIWRGTIKR
Ga0208896_11275702	3300026259	Marine	ITSKNKISVKNFFFKQILSYFILMLLDNVICLSIKAIYRFHKK
Ga0208896_11409182	3300026259	Marine	AYFNHTYSLITSKNKISVKNFFFKQILDYFILTPLDNVIRLNIKTRYRFNRIWRGTIKR
Ga0208524_10728753	3300026261	Marine	ISTIRSLITSKNKISVKNFFFKQILGYFILTPLDNVIRLNIKTRYRFHKK
Ga0208524_11255342	3300026261	Marine	ISTIRSLITSKNKISVKNFFFKQILGYFILTPPDNVIRLNIKTRYRFHKK
Ga0207992_11483751	3300026263	Marine	FKNKISVKNFFFKQILDYFILTPLDNVIRLNMKAIYRFHKK
Ga0208765_10354334	3300026265	Marine	STIRSLITSKNKISVKNFFFKQILDYFILTPLDNVIRLNIETRYRFNRIWRGTIKR
Ga0208278_10664601	3300026267	Marine	TSKNKISVKNFFFKQILDYFILTPLDNVIRLNIETRYSYHKK
Ga0208278_10932151	3300026267	Marine	LISTIRSLITSKNKISVKNFFFKQILNYFILTLLDNVIRLNMKTIYRFDKK
Ga0208278_11183521	3300026267	Marine	ISTIRSLIASKNKISVKNFFFKQILNYFILTLLDNVILLNMETIYGSRKKK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F090851

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences