Metagenome / Metatranscriptome Family F090841

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090841
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	69 residues
Representative Sequence	MEIAAPGPTGDARGAPRLLAHCAAVERLVRAEGGTARARLEEELGGHLAGLLCRALVQRQPSRALILAL
Number of Associated Samples	93
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	68.52 %
% of genes near scaffold ends (potentially truncated)	22.22 %
% of genes from short scaffolds (< 2000 bps)	82.41 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (64.815 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (16.667 % of family members)
Environment Ontology (ENVO)	Unclassified (35.185 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (53.704 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.58% β-sheet: 0.00% Coil/Unstructured: 47.42%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00892	EamA	11.11
PF00156	Pribosyltran	6.48
PF13200	DUF4015	3.70
PF13240	zinc_ribbon_2	1.85
PF13302	Acetyltransf_3	0.93
PF02880	PGM_PMM_III	0.93
PF00376	MerR	0.93
PF06596	PsbX	0.93
PF02879	PGM_PMM_II	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0033	Phosphoglucomutase/phosphomannomutase	Carbohydrate transport and metabolism [G]	1.85
COG1109	Phosphomannomutase	Carbohydrate transport and metabolism [G]	1.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.81 %
Unclassified	root	N/A	35.19 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.81 %
Unclassified	root	N/A	35.19 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.81 %
Unclassified	root	N/A	35.19 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	60.19 %
Unclassified	root	N/A	35.19 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	60.19 %
Unclassified	root	N/A	35.19 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	49.07 %
Unclassified	root	N/A	35.19 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	5.56 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	49.07 %
Unclassified	root	N/A	35.19 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	5.56 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	49.07 %
Unclassified	root	N/A	35.19 %
Conexibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae	2.78 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	49.07 %
Unclassified	root	N/A	35.19 %
Conexibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter	2.78 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	49.07 %
Unclassified	root	N/A	35.19 %
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	2.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_109887617	Not Available	867	Open in IMG/M
3300001686\|C688J18823_10096505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2053	Open in IMG/M
3300003316\|rootH1_10158733	Not Available	1215	Open in IMG/M
3300004114\|Ga0062593_100547225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1088	Open in IMG/M
3300004114\|Ga0062593_101190235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	799	Open in IMG/M
3300004114\|Ga0062593_101282791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	775	Open in IMG/M
3300004153\|Ga0063455_100118253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1139	Open in IMG/M
3300004156\|Ga0062589_101111573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	749	Open in IMG/M
3300004156\|Ga0062589_102091966	Not Available	577	Open in IMG/M
3300004157\|Ga0062590_100829158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	855	Open in IMG/M
3300004479\|Ga0062595_102354557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	527	Open in IMG/M
3300004480\|Ga0062592_101057989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	747	Open in IMG/M
3300005328\|Ga0070676_10084686	Not Available	1930	Open in IMG/M
3300005331\|Ga0070670_100554388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1026	Open in IMG/M
3300005332\|Ga0066388_101217223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1289	Open in IMG/M
3300005340\|Ga0070689_102080036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	520	Open in IMG/M
3300005343\|Ga0070687_100195885	All Organisms → cellular organisms → Bacteria	1221	Open in IMG/M
3300005344\|Ga0070661_100695856	Not Available	828	Open in IMG/M
3300005345\|Ga0070692_10979263	Not Available	590	Open in IMG/M
3300005354\|Ga0070675_101277556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	676	Open in IMG/M
3300005356\|Ga0070674_102113392	Not Available	514	Open in IMG/M
3300005365\|Ga0070688_100106233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1859	Open in IMG/M
3300005441\|Ga0070700_100156166	Not Available	1566	Open in IMG/M
3300005441\|Ga0070700_100245391	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1282	Open in IMG/M
3300005457\|Ga0070662_100086188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2349	Open in IMG/M
3300005526\|Ga0073909_10250220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	787	Open in IMG/M
3300005536\|Ga0070697_101815989	Not Available	545	Open in IMG/M
3300005547\|Ga0070693_100157259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1445	Open in IMG/M
3300005548\|Ga0070665_100883042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	907	Open in IMG/M
3300005549\|Ga0070704_100230521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1510	Open in IMG/M
3300005564\|Ga0070664_101719266	Not Available	595	Open in IMG/M
3300005577\|Ga0068857_100333933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1401	Open in IMG/M
3300005614\|Ga0068856_100229134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1873	Open in IMG/M
3300005615\|Ga0070702_100114549	Not Available	1678	Open in IMG/M
3300005713\|Ga0066905_100336056	All Organisms → cellular organisms → Bacteria	1201	Open in IMG/M
3300005840\|Ga0068870_10051546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2179	Open in IMG/M
3300005886\|Ga0075286_1065432	Not Available	527	Open in IMG/M
3300005937\|Ga0081455_10026114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	5380	Open in IMG/M
3300005937\|Ga0081455_10104508	All Organisms → cellular organisms → Bacteria	2266	Open in IMG/M
3300006169\|Ga0082029_1432653	Not Available	752	Open in IMG/M
3300006237\|Ga0097621_101196181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	716	Open in IMG/M
3300006844\|Ga0075428_100138696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2644	Open in IMG/M
3300009094\|Ga0111539_10016073	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9288	Open in IMG/M
3300009100\|Ga0075418_10140143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2573	Open in IMG/M
3300009100\|Ga0075418_12964827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	518	Open in IMG/M
3300009148\|Ga0105243_10933463	Not Available	865	Open in IMG/M
3300009789\|Ga0126307_10013367	All Organisms → cellular organisms → Bacteria	6035	Open in IMG/M
3300010042\|Ga0126314_10248002	Not Available	1263	Open in IMG/M
3300010042\|Ga0126314_10460537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	920	Open in IMG/M
3300010045\|Ga0126311_10389480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1070	Open in IMG/M
3300010373\|Ga0134128_12406937	Not Available	580	Open in IMG/M
3300010373\|Ga0134128_13148705	Not Available	507	Open in IMG/M
3300010375\|Ga0105239_10528576	Not Available	1342	Open in IMG/M
3300012469\|Ga0150984_104325716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	911	Open in IMG/M
3300012469\|Ga0150984_112959753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1373	Open in IMG/M
3300012893\|Ga0157284_10087262	Not Available	791	Open in IMG/M
3300012897\|Ga0157285_10002201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3304	Open in IMG/M
3300012897\|Ga0157285_10274687	Not Available	563	Open in IMG/M
3300012902\|Ga0157291_10350494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	530	Open in IMG/M
3300013100\|Ga0157373_11428017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	527	Open in IMG/M
3300013297\|Ga0157378_10077747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2992	Open in IMG/M
3300013297\|Ga0157378_10780623	Not Available	980	Open in IMG/M
3300013306\|Ga0163162_11099821	Not Available	900	Open in IMG/M
3300014325\|Ga0163163_10301801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1654	Open in IMG/M
3300014326\|Ga0157380_10261698	Not Available	1572	Open in IMG/M
3300014326\|Ga0157380_13020983	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	536	Open in IMG/M
3300015372\|Ga0132256_101429347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	803	Open in IMG/M
3300015373\|Ga0132257_100105048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3257	Open in IMG/M
3300015374\|Ga0132255_103037511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	716	Open in IMG/M
3300017965\|Ga0190266_10023705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1843	Open in IMG/M
3300018031\|Ga0184634_10429822	Not Available	598	Open in IMG/M
3300018469\|Ga0190270_10354593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1335	Open in IMG/M
3300019356\|Ga0173481_10031610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1703	Open in IMG/M
3300019356\|Ga0173481_10469132	Not Available	633	Open in IMG/M
3300019361\|Ga0173482_10356831	Not Available	664	Open in IMG/M
3300019867\|Ga0193704_1074386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	632	Open in IMG/M
3300021445\|Ga0182009_10047018	All Organisms → cellular organisms → Bacteria	1809	Open in IMG/M
3300024055\|Ga0247794_10325268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	522	Open in IMG/M
3300025321\|Ga0207656_10706455	Not Available	516	Open in IMG/M
3300025885\|Ga0207653_10148275	Not Available	862	Open in IMG/M
3300025899\|Ga0207642_10484334	Not Available	755	Open in IMG/M
3300025908\|Ga0207643_10025295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3281	Open in IMG/M
3300025912\|Ga0207707_10852969	Not Available	756	Open in IMG/M
3300025920\|Ga0207649_11516874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	530	Open in IMG/M
3300025925\|Ga0207650_10383337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1161	Open in IMG/M
3300025927\|Ga0207687_10777170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	816	Open in IMG/M
3300025933\|Ga0207706_10021316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	5822	Open in IMG/M
3300025942\|Ga0207689_10074240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2795	Open in IMG/M
3300025945\|Ga0207679_11503803	Not Available	617	Open in IMG/M
3300026116\|Ga0207674_10010865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	10261	Open in IMG/M
3300026116\|Ga0207674_10051126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	4218	Open in IMG/M
3300028711\|Ga0307293_10030671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1624	Open in IMG/M
3300028720\|Ga0307317_10082952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1052	Open in IMG/M
3300028721\|Ga0307315_10027253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1510	Open in IMG/M
3300028791\|Ga0307290_10022048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2228	Open in IMG/M
3300028809\|Ga0247824_10360987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	831	Open in IMG/M
3300028811\|Ga0307292_10334787	Not Available	638	Open in IMG/M
3300028819\|Ga0307296_10104991	Not Available	1516	Open in IMG/M
3300028824\|Ga0307310_10569083	Not Available	575	Open in IMG/M
3300028889\|Ga0247827_11119241	Not Available	542	Open in IMG/M
3300031091\|Ga0308201_10050747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1039	Open in IMG/M
3300031548\|Ga0307408_100057959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2814	Open in IMG/M
3300031562\|Ga0310886_11036928	Not Available	527	Open in IMG/M
3300031740\|Ga0307468_100299967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1166	Open in IMG/M
3300031903\|Ga0307407_10425007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	958	Open in IMG/M
3300031903\|Ga0307407_11636762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	511	Open in IMG/M
3300031908\|Ga0310900_10509783	Not Available	936	Open in IMG/M
3300031940\|Ga0310901_10387400	Not Available	606	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	56.48%
Host-Associated	Host-Associated	43.52%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	55.56%
Plants	Host-Associated → Plants	43.52%
Aquatic	Environmental → Aquatic	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.56%
Rhizosphere	Host-Associated → Plants → Rhizosphere	27.78%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.96%
Roots	Host-Associated → Plants → Roots	1.85%
Sediment	Environmental → Aquatic → Sediment	0.93%
Rhizome	Host-Associated → Plants → Rhizome	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.81%
Loam	Environmental → Terrestrial → Soil → Loam	14.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.11%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.85%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.93%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.11%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.11%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.33%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.63%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.85%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	7.41%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.41%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	5.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.63%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.70%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.70%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.78%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.78%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.85%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.85%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.93%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.93%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.93%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300003316	Sugarcane root Sample L1	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005886	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_205	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019867	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1098876172	3300000956	Soil	MEVAAPGHTGDARGAPRLLEHCAAVERLVQGEGGSARARLEEELGGHLAGILCRALVQRRPSRAAILAL*
C688J18823_100965054	3300001686	Soil	MEIAAPGPTGDARGAPRLLEHCAAVERLVLAEGGTARARLEEELGGHLAGLLCRALVQRQPSRALILAL
rootH1_101587332	3300003316	Sugarcane Root And Bulk Soil	MEIAAPGHTGDARGAPRLLEHCAAVERLVRAEGGTARARLEDELGGHLAGLLCRALVQRQPSATLLAL*
Ga0062593_1005472252	3300004114	Soil	MEIAAPGHAGDARGAPRLLEHCAAVERLVQADRGTARARLEDELGGHLAGLLCRALVQRQPSRALILAL*
Ga0062593_1011902352	3300004114	Soil	MEAAAPGHAGAARGAPRILEHCAAVERLVQGESITARARLECELGGHLAGLLCRALVQRRPSRAIILAL*
Ga0062593_1012827912	3300004114	Soil	MEAAAPGPTGPARGAPRILEHCAAVERLVHGESETARARLEGELGGHLAGLLCRALVQRRPSRAIILAL*
Ga0063455_1001182532	3300004153	Soil	MEAAAPGHTGAARGAPRLLEHCAAFDRLAQPDAATARARLEEELGGHLAGLLCRALVQRRSARPVLAGL*
Ga0062589_1011115732	3300004156	Soil	METAAPGHTGDARGAPRLLEHCAAVERLVRAEGGTARARLEDELGGHLAGLLCRALVQRQPSRTLVFVL*
Ga0062589_1020919661	3300004156	Soil	DAGGMEFAASGHTGDARGAPLLLDHCAAVERLLRAEGVTARARLEDELGGHLAGLLCRALVQRQASRAVALALF*
Ga0062590_1008291582	3300004157	Soil	MEIAAPGPAGDARGAPRLLAHCAVVERLVRAEGGTARARLEQELGGDLAGLLCRALVQRQPSRALILAL*
Ga0062595_1023545571	3300004479	Soil	GDARGAPRLLAHCAVVERLVRAEGGTARARLEQELGGDLAGLLCRALVQRQPSRALILAL
Ga0062592_1010579892	3300004480	Soil	METAAPGHTGDARGAPRLLEHCAAVERLVRAEGGTARARLEDELGGHLAGLLCRALVQRQPSRALVFVL*
Ga0070676_100846863	3300005328	Miscanthus Rhizosphere	MRTDAGGMEFAASGHTGDPRGAPRLLEHCAAVERLVQAEGVTARTRLDIELGGHLAGLLCRALVQRQPSRAVILAL*
Ga0070670_1005543881	3300005331	Switchgrass Rhizosphere	MEIAAPGPTGDAQGAPRLLAHCAAVERLVRAEGGTARARLEQELGGDLAGLLCRALVQRQPSRALILAL*
Ga0066388_1012172232	3300005332	Tropical Forest Soil	MQFAAPGHTGDPRGAPRLLEHCAAVERLVQAEGGTARARLEDELGGHLAGLLCRALVQRQSSRAVILAL*
Ga0070689_1020800361	3300005340	Switchgrass Rhizosphere	SARSTDEGGMEIAAPGPTGDARGAPRLLAHCAVVERLVRAEGGTARARLEQELGGDLAGLLCRALVQRQPSRALILAL*
Ga0070687_1001958852	3300005343	Switchgrass Rhizosphere	MEAAAPGHTGDARGAPRLLEHCAAVERLVQGEGGSARARLEEELGGHLAGILCRALVQRRPSRAVILAL*
Ga0070661_1006958561	3300005344	Corn Rhizosphere	MEFAASGHTGDARGAPRLLEHCAAVERLVQAEGMTARTRLDIELGGHLAGLLCRALVQRQPSRAVILAL*
Ga0070692_109792631	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MEIAAPGPTGDARGAPRLLAHCAAVERLVRAEGGTARARLEEELGGHLAGLLCRALVQRQSRALILAL*
Ga0070675_1012775561	3300005354	Miscanthus Rhizosphere	MEIAAPGPTGDARGAPRLLAHCAVVERLVRAEGGTARARLEQELGGDLAGLLCRALVQRQPSRALILPL*
Ga0070674_1021133921	3300005356	Miscanthus Rhizosphere	GDARGAPRLLEHCAAVERLVQGEGGSARARLEEELGGHLAGILCRALVQRRPSRAVILAL
Ga0070688_1001062333	3300005365	Switchgrass Rhizosphere	MEIAAPGPTGDARGAPRLLAHCAVVERLVRAEGGTARARLEQELGGDLAGLLCRALVQRQRSRALILAL*
Ga0070700_1001561661	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	GAPRLLAHCAAVERLVRAEGGTARARLEQELGGDLAGLLCRALVQRQPSRALILAL*
Ga0070700_1002453911	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MEIAAPGPTGDARGAPRLLAHCAAVERLVRVEGGTARARLEEELGGHLAGLLCRALVQRQSRALILAL*
Ga0070662_1000861884	3300005457	Corn Rhizosphere	MEIAAPGPTGDARGAPRLLAHCAVVERLVRAEGGTARARLEQELGGDLAGLLCRALVQRQPSRALILAL*
Ga0073909_102502201	3300005526	Surface Soil	MEIAAPGPTGDARGAPRLLAHCVAVERLVRAEGGTARARLEEELGGHLAGLLCRALVQRQSRALVLAL*
Ga0070697_1018159892	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MEFAASGHTGDARGAPRLLEHCAAVERLVQAEGVTARTRLDIELGGHLAGLLCRALVQRQPSRAVILAL*
Ga0070693_1001572592	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MEIAASGLTGDARGAPRLLEHCAAVERLVGAEGGTARARLENELGGHLAGLLCRALVQRRPSRALVFVL*
Ga0070665_1008830422	3300005548	Switchgrass Rhizosphere	MEIAAPGPTGDARGAPRLLAHCAVVERLVRAEGGTARARLEQELGGDLAGLLCRALVQRQPTRALILAL*
Ga0070704_1002305212	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MEAAAPGHTGDGRGAPRLLEHCAAVERLVQGEGGSARARLEEELGGHLAGILCRALVQRRPSRAVILAL*
Ga0070664_1017192661	3300005564	Corn Rhizosphere	RTDAGGMEFAASGHTGDARGAPRLLEHCAAVERLVQAEGMTARTRLDIELGGHLAGLLCRALVQRQPSRAVILAL*
Ga0068857_1003339332	3300005577	Corn Rhizosphere	MEIAAPGPPGDARGAPRLLAHCAAVERLVRAEGGTARARLEEELGGHLAGLLCRALVQRQSRTLILAL*
Ga0068856_1002291342	3300005614	Corn Rhizosphere	MEIAAPGPAGDARGAPRLLAHYAVVERLVRAEGGTARARLEQELGGDLAGLLYRALVQRQPSRALILAL*
Ga0070702_1001145493	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MRTDAGGMEFAASGHTGDARGAPRLLEHCAAVERLVQAEGMTARTRLDIELGGHLAGLLCRALVQRQPSRAVILAL*
Ga0066905_1003360563	3300005713	Tropical Forest Soil	MQFAAPGHTGDPRGAPRLLEHCAAVERLVQAEGGTARARLEDELGGHLAGLLCRALVQRQSSRALILAL*
Ga0068870_100515463	3300005840	Miscanthus Rhizosphere	MEIAAPGPTGDAQGAPRLLAHCAAVERLVRAEGGTARARLEQELGGDLAGLLCRALVQRQPSRALILPL*
Ga0075286_10654322	3300005886	Rice Paddy Soil	MEAAAPGHTGAVRGAPRLLQDCAAFERLAQPEAGSARARLEEELGGQLAGLLCRALVQRRSARPVVVGL*
Ga0081455_100261142	3300005937	Tabebuia Heterophylla Rhizosphere	MQFAAPGHMGDARGAPRLLEHFAAVERLVQAEGATARARLEGELGGHLAGLLCRALVQRQPSRAVVLAV*
Ga0081455_101045081	3300005937	Tabebuia Heterophylla Rhizosphere	MKFAAPGHTGDARGAPRLLEHFAAVERLVQGEGGTARSRLEDELGGHLAGLLCRALVQRQPSRAVALALC*
Ga0082029_14326532	3300006169	Termite Nest	MEFAAPGHTGDVRGAPRLLEHCAAVDRLMQSDGGTALARLEDELGGHLAGLLCRALVQRQSSRTAIFAL*
Ga0097621_1011961811	3300006237	Miscanthus Rhizosphere	MEIAAPGPTGDARGAPRLLAHCAVVERLVRTEGGTARARLEQELGGDLAGLLCRALVQRQPSRALILAL*
Ga0075428_1001386962	3300006844	Populus Rhizosphere	MEIAAPGPTGDARGAPRLLAHCAAVERLVRAEGGTARARLEEELGGHLAGLLCRALVQRESRALILAL*
Ga0111539_100160739	3300009094	Populus Rhizosphere	MEIAAPGPTGDARGAPRLLAHCAAVERLVRAEGGTARARLEEELGGHLAGLLCRALVQRQPSRALILAL*
Ga0075418_101401433	3300009100	Populus Rhizosphere	MEIAAPGPTGDARGAPRLLAHCAAVERLVRAEGETARARLEEELGGHLAGLLCRALVQRQPSRALILAL*
Ga0075418_129648272	3300009100	Populus Rhizosphere	ARGAPRLLAHCAAVERLVRAEGGTARARLEEELGGHLAGLLCRALVQRESRALILAL*
Ga0105243_109334631	3300009148	Miscanthus Rhizosphere	AAAPGHTGDARGAPRLLEHCAAVERLVQGEGGSARARLEEELGGHLAGILCRALVQRRPSRAVILAL*
Ga0126307_100133672	3300009789	Serpentine Soil	MEIAAPGSTGDARGAPRLLEHCAVVERLVRAEGRTARARLEEELGGHLAGLLCRALVQRQPSWALVFAL*
Ga0126314_102480021	3300010042	Serpentine Soil	DADRMEIAAPGSTGDTRGAPRLLEHCAVVERLVRAEGRTARARLEEELGGHLAALLCRALVQRQPSWALVFAL*
Ga0126314_104605372	3300010042	Serpentine Soil	MEITAPGPSGDARGAPRLLEHCAAVERLVRAEGGTARARLEEELGGHLAGLLCRALVQRQPSQASILAL*
Ga0126311_103894802	3300010045	Serpentine Soil	MEIAAPGPSGDARGAPRLLEHCAAVERLVRAEGGTARARLEEELGGHLAGLLCRALVQRQPSQASILAL*
Ga0134128_124069372	3300010373	Terrestrial Soil	MEFAASGHTGDPRGAPRLLEHCAAVERLVQAKGVTARTRLDIELGGHLAGLLCRALVQRQPSRAVILAL*
Ga0134128_131487052	3300010373	Terrestrial Soil	MEAAAPGHTGDARGAPRLLEHCAAVERLVQREGGSARARLEEELGGHLAGILCRALVQRRPSRAVILAL*
Ga0105239_105285761	3300010375	Corn Rhizosphere	MKAGMEIAAPGPTGDARGAPRLLAHCAVVERLVRAEGGTARARLEQELGGDLAGLLCRALVQRQPSRALILAL*
Ga0150984_1043257162	3300012469	Avena Fatua Rhizosphere	MEIAAPGPTGDARGAPRLLEHCAAVERLVRVEGGTARARLEEELGGHLAGLLCRALVQRQPSRALILAL*
Ga0150984_1129597532	3300012469	Avena Fatua Rhizosphere	MEAAAPGHTGAARGAPRLLEHCAAFDRLAQPDAATARARLEEELGGPLAGLLCRALVQRRSARPVLAGL*
Ga0157284_100872624	3300012893	Soil	MEFAASGHTGDARGAPLLLDHCAAVERLLRAEGVTARARLEDELGGHLAGLLCRALVQRQASRAVALALF*
Ga0157285_100022013	3300012897	Soil	MEFAASGHSGDARGAPRLLEHCAAVERLVQAEGVTARTRLDIELGGHLAGLLCRALVQRQPSRAVILAL*
Ga0157285_102746872	3300012897	Soil	MEIAAPGPAGDARGAPRLLAHCAVVERLVRAEGGTARARLEQELGGHLAGLLCRALVQRQPSRALILAL*
Ga0157291_103504942	3300012902	Soil	MEIAAPGPTGDARGAPRLLAHCAAVERLVRADDGTARARLEEELGGHLAGLLCRALVQRQSRALILAL*
Ga0157373_114280172	3300013100	Corn Rhizosphere	SLAPGISGSGRSTDEGGMEIAAPGPTGDARGAPRLLAHCAVVERLVRAEGGTARARLEQELGGDLAGLLCRALVQRQPSRALILPL*
Ga0157378_100777471	3300013297	Miscanthus Rhizosphere	MRTDAGGMEFAASGHTGDPRGAPRLLEHCAAVERLVQAEGMTARTRLDIELGGHLAGLLCRALVQRQPSRAVILAL*
Ga0157378_107806231	3300013297	Miscanthus Rhizosphere	APGPTGDARGAPRLLAHCAVVERLVRAEGGTARARLEQELGGDLAGLLCRALVQRQPSRALILAL*
Ga0163162_110998212	3300013306	Switchgrass Rhizosphere	MRTDAGGMEFAASGRTGDPRGAPRLLEHCAAVERLVQAEGVTARTRLDIELGGRLAGLLCRALVQRQPSRAVILAL*
Ga0163163_103018012	3300014325	Switchgrass Rhizosphere	MEIAAPGPAGDARGAPRLLAHCAAVERLVRAEGGTARARLEQELGGDLAGLLCRALVQRQPSRALILAL*
Ga0157380_102616983	3300014326	Switchgrass Rhizosphere	GAPRLLQHCAAVERLVQAEGMTARTRLDIELGGHLAGLLCRALVQRQPSRAVILAL*
Ga0157380_130209831	3300014326	Switchgrass Rhizosphere	PGISGSARSTDAGGMEIVAPGPTGDARGAPRLLAHCAAVERLVRVEGGTARARLEEELGGHLAGLLCRALVQRQPSRALILAL*
Ga0132256_1014293472	3300015372	Arabidopsis Rhizosphere	MEIAAPGPTGDAHGAPRLLAHCAVVERLVRAEGGTARARLEQELGGDLAGLLCRALVQRQPSRALILAL*
Ga0132257_1001050483	3300015373	Arabidopsis Rhizosphere	MEFAASGHTGDPRGAPRLLEHCAAVERLVQAEGVTARTRLDLELGGHLAGLLCRALVQRQPSRAVILAL*
Ga0132255_1030375112	3300015374	Arabidopsis Rhizosphere	MEIAAPGPTGDARGAPRLLAHCAVVERLVRAEGGTARARLEQELGGDLARLLCRALVQRQPSRALILAL*
Ga0190266_100237052	3300017965	Soil	MEIAAPGPAGDARGAPRLLAHCAAVERLVRAEGGTARARLEEELGGHLAGLLCRALVQRQSRALILAL
Ga0184634_104298221	3300018031	Groundwater Sediment	MEIAAPGPTGDARGAPRLLAHCAAVERLVRAEGGTARARLEEELGGHLAGLLCRALVQRQSRALVLAL
Ga0190270_103545932	3300018469	Soil	MEIAAPGPTGDARGAPRLLEHCAAVERLVRAEGGTARARLEEELGGHLAGLLCRALVQRQSSPAQILAL
Ga0173481_100316102	3300019356	Soil	MEFAASGHTGDARGAPRLLEHCAAVERLVQAEGVTARTRLDIELGGHLAGLLCRALVQRQPSRAVILAL
Ga0173481_104691322	3300019356	Soil	MEIAAPGPAGDARGAPRLLAHCAVVERLVRAEGGTARARLEQELGGDLAGLLCRALVQRQPSRALILAL
Ga0173482_103568311	3300019361	Soil	MEFAASGHTGDARGAPLLLDHCAAVERLLRAEGVTARARLEDELGGHLAGLLCRALVQRQPSRAVILAL
Ga0193704_10743862	3300019867	Soil	MQSDMEAAAPGNTGGARGAPRLLEHCAAVERLVQPQTGSARARLEDELGGHLAGLLCSALVQRRPSRAVLLAF
Ga0182009_100470181	3300021445	Soil	MEAAAPGHTGAARGAPRLLEHCAAFERLAQTDTGTARARLEDELGGHLAGLLCRALVQRRSTRPVVAGL
Ga0247794_103252682	3300024055	Soil	METAAPGHTGDARGAPRLLEHCAAVERLVRAEGGTARARLEDELGGHLAGLLCRALVQRQPSRTLVFVL
Ga0207656_107064551	3300025321	Corn Rhizosphere	MEIAAPGPAGDARGAPRLLAHCAVVERLVRAEGGTARARLEQELGGDLAGLLCRALVQRQPSRALILPL
Ga0207653_101482753	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MRTDAGGMEFAASGHTGDPRGAPRLLEHCAAVERLVQAEGVTARTRLDIELGGHLAGLLCRALVQRQPSRAVILAL
Ga0207642_104843342	3300025899	Miscanthus Rhizosphere	MEAAAPGHTGDARGAPRLLEHCAAVERLVQGEGGSARARLEEELGGHLAGILCRALVQRRPSRAVILAL
Ga0207643_100252953	3300025908	Miscanthus Rhizosphere	MEIAAPGPTGDAQGAPRLLAHCAAVERLVRAEGGTARARLEQELGGDLAGLLCRALVQRQPSRALILPL
Ga0207707_108529692	3300025912	Corn Rhizosphere	MEFAASGHTGDPRGAPRLLEHCAAVERLVQAEGVTARTRLDIELGGHLAGLLCRALVQRQPSRAVILAL
Ga0207649_115168741	3300025920	Corn Rhizosphere	TDARRMETAAPGHTGDARGAPRLLEHCAAVERLVRAEGGTARARLEDELGGHLAGLLCRALVQRQPSRTLVFVL
Ga0207650_103833372	3300025925	Switchgrass Rhizosphere	MEIAAPGPTGDAQGAPRLLAHCAAVERLVRAEGGTARARLEQELGGDLAGLLCRALVQRQPSRALILAL
Ga0207687_107771702	3300025927	Miscanthus Rhizosphere	MEIAAPGPTGDARGAPRLLAHCAVVERLVRAEGGTARARLEQELGGDLAGLLCRALVQRQPSRALILAL
Ga0207706_100213168	3300025933	Corn Rhizosphere	MEFAASGHTGDARGAPRLLEHCAAVERLVQAEGMTARTRLDIELGGHLAGLLCRALVQRQPSRAVILAL
Ga0207689_100742404	3300025942	Miscanthus Rhizosphere	MEIAAPGPTGDARGAPRLLAHCAAVERLVRAEGGTARARLEQELGGDLAGLLCRALVQRQPSRALILAL
Ga0207679_115038031	3300025945	Corn Rhizosphere	GGMEFAASGHTGDARGAPRLLEHCAAVERLVQAEGMTARTRLDIELGGHLAGLLCRALVQRQPSRAVILAL
Ga0207674_100108658	3300026116	Corn Rhizosphere	VRRTDARSMETAAPGHTGDARGAPRLLEHCAAVERLVRAEGGTARARLEDELGGHLAGLLCRALVQRQPSRALVFVL
Ga0207674_100511261	3300026116	Corn Rhizosphere	MEIAAPGPPGDARGAPRLLAHCAAVERLVRAEGGTARARLEEELGGHLAGLLCRALVQRQSRALILAL
Ga0307293_100306711	3300028711	Soil	MEAAAPGPTGAARGAPRLLEHCAVVERLVQAETGSARARLEDELGGHLAGLLCRALVQRQPSRAVILAL
Ga0307317_100829521	3300028720	Soil	MEIAAPGPTGDARGAPRLLEHCAAVERLVRADGGTARARLEEELGGHLAGLLCRALVQRQSSRALILAL
Ga0307315_100272533	3300028721	Soil	VGRPMQSDMEAAAPGNTGGARGAPRLLEHCAAVERLVQPQTGSARARLEDELGGHLAGLLCSALVQRRPSRAVLLAF
Ga0307290_100220481	3300028791	Soil	MQSDMEAAAPGNTGGARGAPRLLEHCAAVERLVQPQTGSARARLEDELGGHLAGLLCSALVQRRPSRAVLL
Ga0247824_103609871	3300028809	Soil	MEIAAPGPTGDARGAPRLLAHCAAVERLVRAEGGTARARLEEELGGHLAGLLCRALVQRESRALILAL
Ga0307292_103347871	3300028811	Soil	RSRTDGGHMEAAAPGPTGAARGAPRLLEHCAVVERLVQAETGSARARLEDELGGHLAGLLCRALVQRQPSRAVILAL
Ga0307296_101049913	3300028819	Soil	MEAAAPGHAGAARGAPRILEHCAAVERLVQGESITARARLEGELGGHLAGLLCRALVQRRPSRAIILAL
Ga0307310_105690831	3300028824	Soil	EAAAPGPTGAARGAPRLLEHCAVVERLVQAETGSARARLEDELGGHLAGLLCRALVQRQPSRAVILAL
Ga0247827_111192411	3300028889	Soil	LHAAPGPTGDARGAPRLLAHCAAVERLVRAEGGTARARLEEELGGHLAGLLCRALVQRESRALILAL
Ga0308201_100507472	3300031091	Soil	MEIAAPGPTGDARGAPRLLAHCAAVERLVRAEGGTARARLEEELGGHLAGLLCRALVQ
Ga0307408_1000579592	3300031548	Rhizosphere	MEIAAPGSTGDTRGAPRLLEHCAVVERLVRAEGRTARARLEEELGGHLAGLLCRALVQRQPSRALVFAL
Ga0310886_110369281	3300031562	Soil	MEFAASGHTGDPRGAPRLLEHCAAVERLVQAEGVTARTRLDLELGGHLAGLLCRALVQRQPSRAVILAL
Ga0307468_1002999672	3300031740	Hardwood Forest Soil	MEFAASGHTGDARGAPRLLEHCAAVERLVQAEGVTARTRLDLELGGHLAGLLCRALVQRQPSRAVILAL
Ga0307407_104250071	3300031903	Rhizosphere	MEIAAPGSTGDTRGDPRLLEHCAVVERLVRAEGRTARARLEEELGGHLAGLLCRAL
Ga0307407_116367622	3300031903	Rhizosphere	STGDTRGAPRLLEHCAVVERLVRAEGRTARARLEEELGGHLAGLLCRALVQRQPSRALVFAL
Ga0310900_105097832	3300031908	Soil	MEIAAPGPTGDARGAPRLLAHCATVERLVRAEGGTARARLEEELGGHLAGLLCRALVQRQSRALILAL
Ga0310901_103874002	3300031940	Soil	MEIAAPGPTGDARGAPRLLAHCVAVERLVRAEGGTARARLEEELGGHLAGLLCRALVQRQSRALILAL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090841

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences