Metagenome / Metatranscriptome Family F090839

Basic Information
Family ID	F090839
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	47 residues
Representative Sequence	TGGRNEAEIRSEVALPDFGLIVTMESAVGAMPVGPAVGTIHIVP
Number of Associated Samples	88
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	97.22 %
% of genes from short scaffolds (< 2000 bps)	91.67 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Most Common Taxonomy
Group	Bacteria (68.519 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere (10.185 % of family members)
Environment Ontology (ENVO)	Unclassified (51.852 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (72.222 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 19.44% Coil/Unstructured: 80.56%
Feature Viewer

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Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF13365	Trypsin_2	24.07
PF13414	TPR_11	6.48
PF05193	Peptidase_M16_C	3.70
PF07992	Pyr_redox_2	0.93
PF04253	TFR_dimer	0.93
PF02557	VanY	0.93
PF11821	ActD	0.93
PF00089	Trypsin	0.93
PF02780	Transketolase_C	0.93
PF01791	DeoC	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG1876	LD-carboxypeptidase LdcB, LAS superfamily	Cell wall/membrane/envelope biogenesis [M]	0.93
COG2173	D-alanyl-D-alanine dipeptidase	Cell wall/membrane/envelope biogenesis [M]	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.44 %
Unclassified	root	N/A	30.56 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.44 %
Unclassified	root	N/A	30.56 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.52 %
Unclassified	root	N/A	30.56 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	62.96 %
Unclassified	root	N/A	30.56 %
Asgard group	clade	All Organisms → cellular organisms → Archaea → Asgard group	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.56 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	5.56 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	4.63 %
Candidatus Helarchaeota	phylum	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Helarchaeota	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.56 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	1.85 %
Candidatus Helarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Helarchaeota → Candidatus Helarchaeota archaeon	0.93 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.56 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1.85 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	0.93 %
Candidatus Helarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Helarchaeota → Candidatus Helarchaeota archaeon	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.56 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1.85 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	0.93 %
Candidatus Helarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Helarchaeota → Candidatus Helarchaeota archaeon	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.56 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1.85 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.93 %
Candidatus Helarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Helarchaeota → Candidatus Helarchaeota archaeon	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_14287270	Not Available	510	Open in IMG/M
3300001990\|JGI24737J22298_10049157	All Organisms → cellular organisms → Bacteria → Acidobacteria	1283	Open in IMG/M
3300002155\|JGI24033J26618_1051880	All Organisms → cellular organisms → Bacteria → Acidobacteria	590	Open in IMG/M
3300004157\|Ga0062590_102851210	Not Available	517	Open in IMG/M
3300005293\|Ga0065715_10937649	Not Available	563	Open in IMG/M
3300005294\|Ga0065705_10286171	All Organisms → cellular organisms → Bacteria → Acidobacteria	1089	Open in IMG/M
3300005295\|Ga0065707_10254534	All Organisms → cellular organisms → Bacteria → Acidobacteria	1115	Open in IMG/M
3300005295\|Ga0065707_10832974	Not Available	588	Open in IMG/M
3300005334\|Ga0068869_100668279	All Organisms → cellular organisms → Bacteria → Acidobacteria	883	Open in IMG/M
3300005340\|Ga0070689_100511974	All Organisms → cellular organisms → Bacteria → Acidobacteria	1029	Open in IMG/M
3300005341\|Ga0070691_10084182	All Organisms → cellular organisms → Bacteria	1561	Open in IMG/M
3300005345\|Ga0070692_10109161	All Organisms → cellular organisms → Bacteria → Acidobacteria	1528	Open in IMG/M
3300005345\|Ga0070692_11208083	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300005356\|Ga0070674_101602108	All Organisms → cellular organisms → Bacteria → Acidobacteria	587	Open in IMG/M
3300005365\|Ga0070688_100871660	All Organisms → cellular organisms → Bacteria → Acidobacteria	708	Open in IMG/M
3300005564\|Ga0070664_101537942	All Organisms → cellular organisms → Bacteria → Acidobacteria	630	Open in IMG/M
3300005564\|Ga0070664_101675013	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300005578\|Ga0068854_101130717	All Organisms → cellular organisms → Bacteria → Acidobacteria	699	Open in IMG/M
3300005841\|Ga0068863_101830871	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	617	Open in IMG/M
3300005841\|Ga0068863_102161776	Not Available	566	Open in IMG/M
3300006169\|Ga0082029_1461243	Not Available	534	Open in IMG/M
3300006804\|Ga0079221_11282735	All Organisms → cellular organisms → Bacteria → Acidobacteria	575	Open in IMG/M
3300006845\|Ga0075421_101989712	Not Available	619	Open in IMG/M
3300006847\|Ga0075431_100565490	All Organisms → cellular organisms → Bacteria → Acidobacteria	1123	Open in IMG/M
3300006853\|Ga0075420_100049913	All Organisms → cellular organisms → Bacteria → Acidobacteria	3724	Open in IMG/M
3300006881\|Ga0068865_100952348	All Organisms → cellular organisms → Bacteria → Acidobacteria	749	Open in IMG/M
3300006904\|Ga0075424_101893838	Not Available	630	Open in IMG/M
3300006904\|Ga0075424_101989887	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	613	Open in IMG/M
3300006954\|Ga0079219_12359730	Not Available	515	Open in IMG/M
3300006969\|Ga0075419_10620323	Not Available	761	Open in IMG/M
3300009011\|Ga0105251_10208391	All Organisms → cellular organisms → Bacteria → Acidobacteria	880	Open in IMG/M
3300009093\|Ga0105240_11794389	All Organisms → cellular organisms → Bacteria → Acidobacteria	639	Open in IMG/M
3300009093\|Ga0105240_12062489	Not Available	592	Open in IMG/M
3300009147\|Ga0114129_11110530	All Organisms → cellular organisms → Bacteria → Acidobacteria	989	Open in IMG/M
3300009147\|Ga0114129_11347433	All Organisms → cellular organisms → Bacteria → Acidobacteria	883	Open in IMG/M
3300009147\|Ga0114129_12081920	Not Available	685	Open in IMG/M
3300009148\|Ga0105243_12016723	All Organisms → cellular organisms → Bacteria → Acidobacteria	612	Open in IMG/M
3300009148\|Ga0105243_13086407	Not Available	504	Open in IMG/M
3300009177\|Ga0105248_10020625	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	7304	Open in IMG/M
3300009553\|Ga0105249_12791552	Not Available	560	Open in IMG/M
3300010037\|Ga0126304_10409876	All Organisms → cellular organisms → Bacteria → Acidobacteria	906	Open in IMG/M
3300010037\|Ga0126304_10745970	All Organisms → cellular organisms → Bacteria → Acidobacteria	663	Open in IMG/M
3300010041\|Ga0126312_10662718	All Organisms → cellular organisms → Bacteria → Acidobacteria	752	Open in IMG/M
3300010045\|Ga0126311_10004472	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	7338	Open in IMG/M
3300010046\|Ga0126384_10423641	All Organisms → cellular organisms → Bacteria → Acidobacteria	1130	Open in IMG/M
3300010046\|Ga0126384_11584086	Not Available	616	Open in IMG/M
3300010166\|Ga0126306_10542959	All Organisms → cellular organisms → Bacteria → Acidobacteria	922	Open in IMG/M
3300010362\|Ga0126377_13225054	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Helarchaeota → Candidatus Helarchaeota archaeon	527	Open in IMG/M
3300010371\|Ga0134125_11871498	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300010373\|Ga0134128_12941271	Not Available	524	Open in IMG/M
3300010396\|Ga0134126_10317521	All Organisms → cellular organisms → Bacteria → Acidobacteria	1824	Open in IMG/M
3300010397\|Ga0134124_10245351	All Organisms → cellular organisms → Bacteria → Acidobacteria	1645	Open in IMG/M
3300010399\|Ga0134127_11587614	All Organisms → cellular organisms → Bacteria → Acidobacteria	728	Open in IMG/M
3300011003\|Ga0138514_100132541	All Organisms → cellular organisms → Bacteria → Acidobacteria	551	Open in IMG/M
3300011119\|Ga0105246_10685438	All Organisms → cellular organisms → Bacteria → Acidobacteria	896	Open in IMG/M
3300011270\|Ga0137391_10029239	All Organisms → cellular organisms → Bacteria	4612	Open in IMG/M
3300011332\|Ga0126317_11104579	Not Available	514	Open in IMG/M
3300012469\|Ga0150984_116081454	All Organisms → cellular organisms → Bacteria → Acidobacteria	690	Open in IMG/M
3300012899\|Ga0157299_10120005	All Organisms → cellular organisms → Bacteria → Acidobacteria	706	Open in IMG/M
3300012917\|Ga0137395_10351200	All Organisms → cellular organisms → Bacteria → Acidobacteria	1051	Open in IMG/M
3300012951\|Ga0164300_10585307	All Organisms → cellular organisms → Bacteria → Acidobacteria	655	Open in IMG/M
3300013297\|Ga0157378_13099179	Not Available	516	Open in IMG/M
3300013308\|Ga0157375_11523336	All Organisms → cellular organisms → Bacteria → Acidobacteria	790	Open in IMG/M
3300013308\|Ga0157375_12685631	Not Available	595	Open in IMG/M
3300014325\|Ga0163163_11631048	All Organisms → cellular organisms → Bacteria → Acidobacteria	706	Open in IMG/M
3300014325\|Ga0163163_12754787	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	548	Open in IMG/M
3300014326\|Ga0157380_12645808	All Organisms → cellular organisms → Bacteria → Acidobacteria	568	Open in IMG/M
3300014745\|Ga0157377_10604984	All Organisms → cellular organisms → Bacteria → Acidobacteria	782	Open in IMG/M
3300014968\|Ga0157379_11529097	All Organisms → cellular organisms → Bacteria → Acidobacteria	650	Open in IMG/M
3300015371\|Ga0132258_10544552	All Organisms → cellular organisms → Bacteria	2908	Open in IMG/M
3300015374\|Ga0132255_101795052	All Organisms → cellular organisms → Bacteria → Acidobacteria	932	Open in IMG/M
3300018469\|Ga0190270_12068380	All Organisms → cellular organisms → Bacteria → Acidobacteria	628	Open in IMG/M
3300025900\|Ga0207710_10052751	All Organisms → cellular organisms → Bacteria → Acidobacteria	1828	Open in IMG/M
3300025904\|Ga0207647_10593083	Not Available	612	Open in IMG/M
3300025908\|Ga0207643_10330202	All Organisms → cellular organisms → Bacteria → Acidobacteria	954	Open in IMG/M
3300025913\|Ga0207695_11520822	Not Available	550	Open in IMG/M
3300025923\|Ga0207681_11349349	Not Available	599	Open in IMG/M
3300025925\|Ga0207650_11446785	Not Available	584	Open in IMG/M
3300025926\|Ga0207659_10343699	All Organisms → cellular organisms → Bacteria → Acidobacteria	1236	Open in IMG/M
3300025930\|Ga0207701_10652035	All Organisms → cellular organisms → Bacteria → Acidobacteria	894	Open in IMG/M
3300025934\|Ga0207686_11507960	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300025936\|Ga0207670_10081520	All Organisms → cellular organisms → Bacteria	2265	Open in IMG/M
3300025936\|Ga0207670_10558685	All Organisms → cellular organisms → Bacteria → Acidobacteria	936	Open in IMG/M
3300025936\|Ga0207670_11156739	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	654	Open in IMG/M
3300025960\|Ga0207651_11966625	Not Available	526	Open in IMG/M
3300025981\|Ga0207640_10167789	All Organisms → cellular organisms → Bacteria → Acidobacteria	1632	Open in IMG/M
3300025981\|Ga0207640_11524455	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	601	Open in IMG/M
3300026035\|Ga0207703_10503484	All Organisms → cellular organisms → Bacteria → Acidobacteria	1137	Open in IMG/M
3300026035\|Ga0207703_11215243	All Organisms → cellular organisms → Bacteria → Acidobacteria	725	Open in IMG/M
3300026035\|Ga0207703_11265714	All Organisms → cellular organisms → Bacteria → Acidobacteria	709	Open in IMG/M
3300026041\|Ga0207639_11664274	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	598	Open in IMG/M
3300026088\|Ga0207641_11826493	All Organisms → cellular organisms → Bacteria → Acidobacteria	609	Open in IMG/M
3300026095\|Ga0207676_10695113	All Organisms → cellular organisms → Bacteria → Acidobacteria	985	Open in IMG/M
3300026095\|Ga0207676_12302100	Not Available	536	Open in IMG/M
3300026116\|Ga0207674_11871157	All Organisms → cellular organisms → Bacteria → Acidobacteria	566	Open in IMG/M
3300026142\|Ga0207698_11576522	All Organisms → cellular organisms → Bacteria → Acidobacteria	672	Open in IMG/M
3300027787\|Ga0209074_10408478	Not Available	571	Open in IMG/M
3300028380\|Ga0268265_12223652	Not Available	555	Open in IMG/M
3300028381\|Ga0268264_12171569	Not Available	563	Open in IMG/M
3300031548\|Ga0307408_100095281	All Organisms → cellular organisms → Bacteria	2256	Open in IMG/M
3300031562\|Ga0310886_10951807	Not Available	548	Open in IMG/M
3300031740\|Ga0307468_102572798	Not Available	500	Open in IMG/M
3300031911\|Ga0307412_11058326	All Organisms → cellular organisms → Bacteria → Acidobacteria	720	Open in IMG/M
3300032017\|Ga0310899_10494498	Not Available	600	Open in IMG/M
3300033179\|Ga0307507_10421219	All Organisms → cellular organisms → Bacteria → Acidobacteria	750	Open in IMG/M
3300033412\|Ga0310810_11045069	All Organisms → cellular organisms → Bacteria → Acidobacteria	690	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	61.11%
Environmental	Environmental	38.89%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	61.11%
Terrestrial	Environmental → Terrestrial	37.96%
Aquatic	Environmental → Aquatic	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	37.04%
Rhizosphere	Host-Associated → Plants → Rhizosphere	33.33%
Rhizoplane	Host-Associated → Plants → Rhizoplane	25.00%
Roots	Host-Associated → Plants → Roots	2.78%
Freshwater	Environmental → Aquatic → Freshwater	0.93%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	28.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	25.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	22.22%
Loam	Environmental → Terrestrial → Soil → Loam	8.33%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.41%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.78%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.85%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.93%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	25.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	22.22%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.30%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.41%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.78%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.85%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.85%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	10.19%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	8.33%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.33%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.63%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	4.63%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	4.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.78%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.78%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.85%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.93%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300001990	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3	Host-Associated	Open in IMG/M
3300002155	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX- M7	Host-Associated	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300033179	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM	Host-Associated	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_142872701	3300000550	Soil	NTYSKLGQVVNTPGRNEAEIRSEVPLPDFGLLVTMEAAEGASPLGPLVGTIHIVP*
JGI24737J22298_100491571	3300001990	Corn Rhizosphere	NVKGRNEAEIKSEVALSDFGLVITMEGAEGAIPVGPAVGTIHIIP*
JGI24033J26618_10518802	3300002155	Corn, Switchgrass And Miscanthus Rhizosphere	EIKSETTLXDFGLVVTMEGADADMPAGPAVGTITIVP*
Ga0062590_1028512101	3300004157	Soil	NTGGRNEAEIKSEVALPDFGLIVTMEGAEGETPIGPAVGTIHIVP*
Ga0065715_109376492	3300005293	Miscanthus Rhizosphere	APGRNEAEIKSEVSMPDFGLVVTMESAEGEMPVGPAVGTIHIVP*
Ga0065705_102861712	3300005294	Switchgrass Rhizosphere	GGRNEAEIRSEVPLPDFGLIVTMESAVGAMPAGPAIGTIHIVP*
Ga0065707_102545342	3300005295	Switchgrass Rhizosphere	NVPGRNEAEIKSETTLPDFGLVVTMEGSDVATPIGPAVGTITIVP*
Ga0065707_108329742	3300005295	Switchgrass Rhizosphere	KLGEIVNTGGRNEAEIKSEVALPDFGLIVTMESAVGAMPVGPAVGTIHIVP*
Ga0068869_1006682791	3300005334	Miscanthus Rhizosphere	GRNEAEIKSETNFPDFGLLITMESAIGESPLGPTVGTIHIVP*
Ga0070689_1005119741	3300005340	Switchgrass Rhizosphere	VSPDNKFSKLGEVVNTAGRNEAEIKSETALPDFGLLITAESTIGESPAGPTVGTIHIVP*
Ga0070691_100841823	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	QQFVKLGQVVNAPGRNEAEIKSETTLPDFGLLVTMENATGIGAAPVGPRIGLIHIVP*
Ga0070692_101091611	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	VISTGGKNEAEIKTETALQDFGLVVTMESAIGVKPVGPAVAHIHIVP*
Ga0070692_112080831	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	VSPDNKYIRLGQVVNTGGRNEAEIRSEVPLPDFGLIVTMESAVGEMPVGPAIGTIHIVP*
Ga0070674_1016021081	3300005356	Miscanthus Rhizosphere	KLGQVVNTPGRNEAEIKSETTLPDFGLLVTMENATAIGAMPVGPRIGLIHIVP*
Ga0070688_1008716601	3300005365	Switchgrass Rhizosphere	GRNEAEIKSETSFPDFGLLITMESAIGESPVGPTVGVIHLVP*
Ga0070664_1015379422	3300005564	Corn Rhizosphere	QVVNAPGRNEAEIKSETTLPDFGLVVTMEGADAEMPAGPTVGTIHIVP*
Ga0070664_1016750131	3300005564	Corn Rhizosphere	GKNEAEVNSTVALSDFGLIVTMESVVGAMPVGPAIGTIHIVP*
Ga0068854_1011307172	3300005578	Corn Rhizosphere	TGGRNEAEIKSEVPLPDFGLVVTMESAVGEMPMGPAIGTIHIVP*
Ga0068864_1009908941	3300005618	Switchgrass Rhizosphere	VGADGTYQKLGEIVNTGGKNEAEFKTETALADFGLLLTMESAIGTAPAGPAVATIHIVP*
Ga0068863_1018308711	3300005841	Switchgrass Rhizosphere	YIRLGQIVNTGGRNEAEIRSEVPLPDFGLIVTLESAVGEMPAGPAIGTIHIVP*
Ga0068863_1021617761	3300005841	Switchgrass Rhizosphere	VNTKDRNEAEIKSEVALADFGLVITMESAVGAMPVGPAVGTIMIVP*
Ga0082029_14612432	3300006169	Termite Nest	AMSADGQFQKLGQIVNAKGRNEAEIKSETTLTDFGLVVTMEAADAPMPAGPAVAHIHIVP
Ga0079221_112827352	3300006804	Agricultural Soil	GGKNEAEVNSVVSYPDFGLIVTLENAIGAMPVGPAIGTIHIVP*
Ga0075421_1019897122	3300006845	Populus Rhizosphere	PDNKFTKIGEIVNTGGRNEAELRSEVALPDFGLIVTMESAVGDMPVGPAIGNIHIVP*
Ga0075431_1005654901	3300006847	Populus Rhizosphere	VNTGGKNEAEIMSQTALPDFGLVVTMESAIGPKPVGPAVAHIHIIP*
Ga0075420_1000499131	3300006853	Populus Rhizosphere	GKNEAEIKSETALPDFGLVVTMESAIGPKPVGPAVAHIHIIP*
Ga0068865_1009523482	3300006881	Miscanthus Rhizosphere	NQFTKLGQIVNAPGRNEAEIKSEVALPDFGLVVTMESADADMPAGPTVGTIHIVP*
Ga0075424_1018938382	3300006904	Populus Rhizosphere	VNTAGRNEAEIKSETSLPDFGLLVTMENADSETPVGPIVGNIHIVP*
Ga0075424_1019898872	3300006904	Populus Rhizosphere	SPDNKFTKLGQIVNTKDRNEAEIKSEVALADFGLVITMESAVGAIPVGPAVGTIMIVP*
Ga0079219_123597301	3300006954	Agricultural Soil	GRNEAEIQSETTLPDFGLVVTMEGADGESPVGPAVGTIHIVP*
Ga0075419_106203231	3300006969	Populus Rhizosphere	KLGQVVNAPGRNEAEIKSETSLKDFGLLITMESADGEAPVGPVVGTIHIVP*
Ga0105251_102083912	3300009011	Switchgrass Rhizosphere	LGQVINSKDRNEAEIRSEVALADFGLVITMENAVGAAPVGPAVGTITIVP*
Ga0105240_117943892	3300009093	Corn Rhizosphere	SEVPLPDFGLVVTMESTVGDMPVGPAIGTIHIVP*
Ga0105240_120624891	3300009093	Corn Rhizosphere	NEAEIKSEVPLPDFGLVVTMESAVGEMPVGPAIGTIHIVP*
Ga0114129_111105302	3300009147	Populus Rhizosphere	GQVVNAPGRNEAEIKSEVALPDFGLVVTMESADADMPAGPTVGTIHIVP*
Ga0114129_113474332	3300009147	Populus Rhizosphere	DMKFVKLGEVVNTPGRNEAEIKSETTLPDFGLIVTMESAVGETPVGPSVATIHIVP*
Ga0114129_120819201	3300009147	Populus Rhizosphere	IVNAPGRNEAEIKAETTLPDFGLLVTMEDAAKLGEMPMGPRIGHIHIIP*
Ga0105243_120167231	3300009148	Miscanthus Rhizosphere	AEIKSETTLPDFGLVVTMEAPDVVTPAGPSVATIHIIP*
Ga0105243_130864071	3300009148	Miscanthus Rhizosphere	NTGGRNEAEIRSEVPLPDFGLVVTMESAVGEMPVGPAIGTIHIVP*
Ga0105248_100206251	3300009177	Switchgrass Rhizosphere	LGQVVNAPGRNEAEIKSEVALPDFGLVVTMESADADMPGGPTVGTIHIVP*
Ga0105249_127915522	3300009553	Switchgrass Rhizosphere	EILNTGNRNEAEIKSEVALPDFGLIVTMEGAEGETPIGPAVGTIHIVP*
Ga0126304_104098762	3300010037	Serpentine Soil	EAEIQSETTLQDFGLVVTMEGADAEMPAGPSVATIHIIP*
Ga0126304_107459701	3300010037	Serpentine Soil	NEAEIKSETTLQDFGLVVTMESADGEMPVGPSVGTIHIVP*
Ga0126312_106627182	3300010041	Serpentine Soil	KLGQVVNTKGRNEAEIKSETTLADFGLLITMEGAEVGSPAGPAVATIHIVP*
Ga0126311_100044726	3300010045	Serpentine Soil	VVNTAGRNEAEIRSEVNLPDFGLVVTMENAEGAMPVGPTVGTIHIVP*
Ga0126384_104236412	3300010046	Tropical Forest Soil	GGRNEAEIRSEVPLPDFGLIVTMESAVGAMPVGPAIGTIHIVP*
Ga0126384_115840861	3300010046	Tropical Forest Soil	FVKLGQVVNTAGRNEAEIKSETEMRDFGLLVTMEGPSVITPVGPAVGVIRIVP*
Ga0126306_105429592	3300010166	Serpentine Soil	GRNEAEIRSETTLTDFGLVVTMESADGEMPVGPAVGNIQIVP*
Ga0126377_132250541	3300010362	Tropical Forest Soil	EIKSELALADFGLVITMENAVGAIPIGPAVGTITIVP*
Ga0134125_118714982	3300010371	Terrestrial Soil	QSEVNWPDFGLLITMEAASATGEGPVGPAVGNIRIVP*
Ga0134128_129412711	3300010373	Terrestrial Soil	IVNTKDRNEAEIKSEVALADFGLVITMESAVGAIPVGPAVGTIMIVP*
Ga0134126_103175211	3300010396	Terrestrial Soil	NEAEVNAQVSYPDFGLIVTLENAVGAMPVGPTVGTIHIVP*
Ga0134124_102453511	3300010397	Terrestrial Soil	NTFTKLGQIVNTKDRNEAEIKSEVALADFGLVITMESAVGAMPVGPAVGTITIVP*
Ga0134127_115876141	3300010399	Terrestrial Soil	NEAEIKSEVALADFGLVITMENAVGAIPVGPAVGTITIIP*
Ga0138514_1001325412	3300011003	Soil	VWAVGADGTYQKLGQIANVKGRNEAEIKSETTLPDFGLLITMEGAEVPSPVGPAVGTIHIVP*
Ga0105246_106854381	3300011119	Miscanthus Rhizosphere	KNEAEIKTETALQDFGLVVTMESAIGVKPVGPAVAHIHIVP*
Ga0137391_100292391	3300011270	Vadose Zone Soil	NTPGRNEAEIKSETNLKDFGLLVTMEDASLKTWVSPAGPPVGIIHIVP*
Ga0126317_111045791	3300011332	Soil	NTGGRNEAELRSEVALPDFGLIVTMESAVGAMPVGPAIGTIHIVP*
Ga0150984_1160814541	3300012469	Avena Fatua Rhizosphere	YIRLGQIVNTGGRNEAEIRSEVPLPDFGLIVTMESAVGEMPAGPAIGTIHIVP*
Ga0157299_101200051	3300012899	Soil	PGRNEAEIKSEVSMPDFGLVVTMESAEGEMPVGPAVGTIHIVP*
Ga0137395_103512002	3300012917	Vadose Zone Soil	PGRNEAEIKSETNLKDFGLLVTMEDASLKTWVSPAGPPVGIIHIVP*
Ga0164300_105853072	3300012951	Soil	NAPGRNEAEIKSEVALPDFGLVVTMESADADMPAGPTIGTIHIVP*
Ga0157378_130991792	3300013297	Miscanthus Rhizosphere	VSPDMKFTKLGEIVNTGGRNEAEIKSEVAMPDFGLIVTMEGAEGETPIGPAVGTIHIVP*
Ga0157375_115233362	3300013308	Miscanthus Rhizosphere	TFTKLGQIVNTKDRNEAEIKSEVALADFGLVITMESAIGAMPVGPAVGTITIVP*
Ga0157375_126856311	3300013308	Miscanthus Rhizosphere	EAEIKSETSLPDFGLLVTMENADSESPLGPTVGTIHIVP*
Ga0163163_116310481	3300014325	Switchgrass Rhizosphere	SEVALADFGLVITMESAVGAIPVGPAVGTIMIVP*
Ga0163163_127547871	3300014325	Switchgrass Rhizosphere	VSPDNTFTKLGQIVNTKDRNEAEIKSEVALADFGLVITMESAVGAIPVGPAVGTIMIVP*
Ga0157380_126458081	3300014326	Switchgrass Rhizosphere	FQKLGQVVNVKGRNEAEIKSETTLTDFGLVVTMESAEAPMPAGPAVAHIHIVP*
Ga0157377_106049841	3300014745	Miscanthus Rhizosphere	VSPVNKYTKIGEVINTGGRNEAEIRSEVALPDFGLIVTMESAVGEIPVGPAVGTIHIVP*
Ga0157379_115290972	3300014968	Switchgrass Rhizosphere	GQVVNVPGRNEAEIKSETTLPDFGLVVTMEGADGESPVGPAVGTIHIVP*
Ga0132258_105445521	3300015371	Arabidopsis Rhizosphere	RNEAEIKSETALQDFGLLITAESTIGESPTGPTVGTIQIVP*
Ga0132255_1017950522	3300015374	Arabidopsis Rhizosphere	VVNTKGRNEAEIRSETTLPDFGLLVTMENVVGAAPIGPAVATIHIVP*
Ga0190270_120683801	3300018469	Soil	NEAEIKSETTLPDFGLVVTMEGADGELPVGPAVGTITIIPAG
Ga0207710_100527512	3300025900	Switchgrass Rhizosphere	VNAPGRNEAEIKSEVALPDFGLVVTMESADADMPGGPTVGTIHIVP
Ga0207647_105930831	3300025904	Corn Rhizosphere	EAEIQSETTLPDFGLLVTMEGSMVESPIGPTVGTIHIVP
Ga0207643_103302022	3300025908	Miscanthus Rhizosphere	EAEIRSEVPLPDFGLIVTMESAVGELPVGPAIGTIHIVP
Ga0207695_115208222	3300025913	Corn Rhizosphere	EAEIKSEVALPDFGLIVTMEGAEGETPIGPAVGTIHIVP
Ga0207681_113493491	3300025923	Switchgrass Rhizosphere	ADNKVTKRGQIVNAPGRNEAEIKSETTLPDFGLVVTMEGADADMPAGPAIGTITIVP
Ga0207650_114467851	3300025925	Switchgrass Rhizosphere	GQVVNTPGRNEAEIKSEVTLPDFGLVVTMEGADAEMPAGPAVAHIHIIQ
Ga0207659_103436992	3300025926	Miscanthus Rhizosphere	PDNQFTKIGEVINTGGRNEAEIRSEVALPDFGLIVTMESAVGEMPVGPAIGTIHIVP
Ga0207701_106520352	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	EIKSETALPDFGLLITAESTIGESPAGPTVGTIHIVP
Ga0207686_115079601	3300025934	Miscanthus Rhizosphere	KFIRLGQVVNTGGRNEAEIRSEVPLPDFGLIVTMESAVGEMPVGPAIGTIHIVP
Ga0207670_100815201	3300025936	Switchgrass Rhizosphere	DIVNTGGKNEAEVNSTVALPDFGLIVTMESVIGAMPVGPAIGTIHIVP
Ga0207670_105586852	3300025936	Switchgrass Rhizosphere	GQVVNVKGRNEAEIKSETTLTDFGLVVTMESAEAPMPAGPAVAHIHIVP
Ga0207670_111567391	3300025936	Switchgrass Rhizosphere	GQVVNTGGRNEAEIRSEVPLPDFGLIVTMESAVGEMPVGPAIGTIHIVP
Ga0207651_119666251	3300025960	Switchgrass Rhizosphere	TGGRNEAEIRSEVALPDFGLIVTMESAVGAMPVGPAVGTIHIVP
Ga0207640_101677892	3300025981	Corn Rhizosphere	NEAEIKSETALPDFGLLITAESTIGESPAGPTVGTIHIVP
Ga0207640_115244551	3300025981	Corn Rhizosphere	IKSEVALPDFGLVVTMESADADMPAGPTVGTITIVP
Ga0207703_105034842	3300026035	Switchgrass Rhizosphere	AGRNEAEIKSETALPDFGLLITAESTIGESPAGPTVGTIHIAP
Ga0207703_112152431	3300026035	Switchgrass Rhizosphere	LGEIVNTGGKNEAEVNSTVALSDFGLIVTMESVVGAMPVGPAIGTIHIVP
Ga0207703_112657142	3300026035	Switchgrass Rhizosphere	GRNEAEIRSEVPLPDFGLIVTMESAVGEMPVGPAIGTIHIVP
Ga0207639_116642741	3300026041	Corn Rhizosphere	KGRNEAEIKSEVALSDFGLVITMEGAEGAIPVGPAIGTIHIIP
Ga0207641_118264931	3300026088	Switchgrass Rhizosphere	TFTKLGQIVNTKDRNEAEIKSEVALADFGLVITMESAVGAMPVGPAVGTIMIVP
Ga0207676_106951131	3300026095	Switchgrass Rhizosphere	PDNQFTKIGEVINTGGRNEAEIRSEVALPDFGLIVTMESAVGAMPVGPAVGTIHIVP
Ga0207676_123021002	3300026095	Switchgrass Rhizosphere	GQITNTGGRNEAEIKSEVPLPDFGLVVTMESTVGEMPMGPAIGTIHIVP
Ga0207674_116765101	3300026116	Corn Rhizosphere	GHNEAEIKTETTLPDFGLLITMENAIGASPVGPGVAHIHIVP
Ga0207674_118711571	3300026116	Corn Rhizosphere	RSEVPLPDFGLIVTMESAVGETPIGPSIGTIHIVP
Ga0207698_115765221	3300026142	Corn Rhizosphere	GRNEAEIKSETTLTDFGLVVTMESAEAPMPAGPAVAHIHIVP
Ga0209074_104084782	3300027787	Agricultural Soil	MKFTKLGEILNTGGRNEAEIKSEVAMPDFGLIVTMEGAEGETPIGPAVGTIHIVP
Ga0268265_122236522	3300028380	Switchgrass Rhizosphere	EAEIKSETSFPDFGLLITMESAIGESPVGPTVGVIHLVP
Ga0268264_121715691	3300028381	Switchgrass Rhizosphere	NTKDRNEAEIKSEVALADFGLIITMESAVGAIPVGPAVGTIMIVP
Ga0307408_1000952813	3300031548	Rhizosphere	KNEAEIKTETALQDFGLIVTMESAIGVKPVGPAVAHIHIVP
Ga0310886_109518071	3300031562	Soil	NAPGRNEAEIKSEVALPDFGLVVTMESADADMPAGPTVGTIHIVP
Ga0307468_1025727981	3300031740	Hardwood Forest Soil	TAGRNEAEIKSEVPLPDFGLIVTMESAIGETPVGPSIGTIHIVP
Ga0307412_110583262	3300031911	Rhizosphere	VVNTKGRNEAEIKSEVNLPDFGLLVTMEDADVPSPAGPGVAHIHIVP
Ga0310899_104944981	3300032017	Soil	NEAEIKSETSLQDFGLVITMESADGAANPLGPTIGTIHIVP
Ga0307507_104212192	3300033179	Ectomycorrhiza	AEIKSETTLPDFGLVVTMEGADADMPAGPTVGTIHIIP
Ga0310810_110450692	3300033412	Soil	EFRSETTFPDFGLLVTMESAVGTAPVGPAVATIHIIP

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090839

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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