Metagenome / Metatranscriptome Family F090831

Basic Information
Family ID	F090831
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	44 residues
Representative Sequence	MGRGGEVTLNWSGTLKGDEIAFTRMAEGGQGQAQEFTLKRQQ
Number of Associated Samples	96
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.83 %
% of genes near scaffold ends (potentially truncated)	87.96 %
% of genes from short scaffolds (< 2000 bps)	92.59 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Most Common Taxonomy
Group	Bacteria (65.741 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (12.963 % of family members)
Environment Ontology (ENVO)	Unclassified (34.259 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.000 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 31.43% Coil/Unstructured: 68.57%
Feature Viewer

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Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF02777	Sod_Fe_C	25.00
PF13442	Cytochrome_CBB3	16.67
PF02775	TPP_enzyme_C	4.63
PF02445	NadA	4.63
PF00753	Lactamase_B	2.78
PF10012	DUF2255	1.85
PF14378	PAP2_3	0.93
PF07519	Tannase	0.93
PF10518	TAT_signal	0.93
PF13531	SBP_bac_11	0.93
PF05638	T6SS_HCP	0.93
PF01007	IRK	0.93
PF02628	COX15-CtaA	0.93
PF13360	PQQ_2	0.93
PF00135	COesterase	0.93
PF12796	Ank_2	0.93
PF00118	Cpn60_TCP1	0.93
PF00903	Glyoxalase	0.93
PF02663	FmdE	0.93
PF00149	Metallophos	0.93
PF04199	Cyclase	0.93
PF13519	VWA_2	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0605	Superoxide dismutase	Inorganic ion transport and metabolism [P]	25.00
COG0379	Quinolinate synthase	Coenzyme transport and metabolism [H]	4.63
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG1612	Heme A synthase	Coenzyme transport and metabolism [H]	0.93
COG1878	Kynurenine formamidase	Amino acid transport and metabolism [E]	0.93
COG2191	Formylmethanofuran dehydrogenase subunit E	Energy production and conversion [C]	0.93
COG2272	Carboxylesterase type B	Lipid transport and metabolism [I]	0.93
COG3157	Type VI protein secretion system component Hcp (secreted cytotoxin)	Intracellular trafficking, secretion, and vesicular transport [U]	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.74 %
Unclassified	root	N/A	34.26 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.74 %
Unclassified	root	N/A	34.26 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.74 %
Unclassified	root	N/A	34.26 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.26 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	12.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	12.04 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.93 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.26 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.70 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.78 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.85 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.93 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.26 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.70 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.78 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.93 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.93 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.93 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.26 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.70 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	2.78 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.93 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.93 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.93 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.26 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.70 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	2.78 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.93 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.93 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.93 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.26 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.70 %
unclassified Burkholderia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia	0.93 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.93 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.93 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.93 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.26 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.70 %
Burkholderia sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia → Burkholderia sp.	0.93 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.93 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.93 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.93 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459003\|FZ032L002G2H8A	Not Available	509	Open in IMG/M
3300000953\|JGI11615J12901_10643577	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	844	Open in IMG/M
3300004157\|Ga0062590_102621886	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300004801\|Ga0058860_10018516	Not Available	527	Open in IMG/M
3300005093\|Ga0062594_101186142	Not Available	755	Open in IMG/M
3300005293\|Ga0065715_10713458	Not Available	643	Open in IMG/M
3300005295\|Ga0065707_10956975	Not Available	550	Open in IMG/M
3300005295\|Ga0065707_11018460	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300005332\|Ga0066388_105801491	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300005334\|Ga0068869_102043396	Not Available	515	Open in IMG/M
3300005337\|Ga0070682_101986128	All Organisms → cellular organisms → Bacteria → Acidobacteria	511	Open in IMG/M
3300005354\|Ga0070675_100045732	All Organisms → cellular organisms → Bacteria	3582	Open in IMG/M
3300005441\|Ga0070700_100206662	All Organisms → cellular organisms → Bacteria	1383	Open in IMG/M
3300005441\|Ga0070700_100856269	All Organisms → cellular organisms → Bacteria → Acidobacteria	737	Open in IMG/M
3300005451\|Ga0066681_10624399	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300005618\|Ga0068864_100183193	All Organisms → cellular organisms → Bacteria	1916	Open in IMG/M
3300005713\|Ga0066905_100840078	Not Available	799	Open in IMG/M
3300005764\|Ga0066903_103642285	Not Available	829	Open in IMG/M
3300005843\|Ga0068860_102547423	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300006058\|Ga0075432_10478421	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300006172\|Ga0075018_10090048	All Organisms → cellular organisms → Bacteria	1345	Open in IMG/M
3300006237\|Ga0097621_101423747	Not Available	656	Open in IMG/M
3300006358\|Ga0068871_100955570	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	796	Open in IMG/M
3300006358\|Ga0068871_101077162	Not Available	751	Open in IMG/M
3300006755\|Ga0079222_11946622	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	575	Open in IMG/M
3300006846\|Ga0075430_101382987	All Organisms → cellular organisms → Bacteria → Acidobacteria	579	Open in IMG/M
3300006847\|Ga0075431_101312054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	684	Open in IMG/M
3300006854\|Ga0075425_101559924	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	745	Open in IMG/M
3300006854\|Ga0075425_101739662	All Organisms → cellular organisms → Bacteria → Acidobacteria	701	Open in IMG/M
3300006871\|Ga0075434_100880446	Not Available	911	Open in IMG/M
3300006881\|Ga0068865_100117490	All Organisms → cellular organisms → Bacteria	1972	Open in IMG/M
3300006904\|Ga0075424_102864629	Not Available	502	Open in IMG/M
3300006918\|Ga0079216_11425140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia → Burkholderia sp.	575	Open in IMG/M
3300006954\|Ga0079219_10237221	All Organisms → cellular organisms → Bacteria	1071	Open in IMG/M
3300006954\|Ga0079219_11279417	Not Available	643	Open in IMG/M
3300007004\|Ga0079218_10372104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	1202	Open in IMG/M
3300007076\|Ga0075435_100834983	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300009100\|Ga0075418_13042241	All Organisms → cellular organisms → Bacteria → Acidobacteria	511	Open in IMG/M
3300009137\|Ga0066709_101379599	All Organisms → cellular organisms → Bacteria	1027	Open in IMG/M
3300009147\|Ga0114129_12733999	Not Available	587	Open in IMG/M
3300009162\|Ga0075423_11322596	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300009162\|Ga0075423_12842027	Not Available	530	Open in IMG/M
3300009444\|Ga0114945_11046365	Not Available	507	Open in IMG/M
3300009545\|Ga0105237_11230607	Not Available	755	Open in IMG/M
3300010045\|Ga0126311_11027373	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	675	Open in IMG/M
3300010047\|Ga0126382_12439369	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300010326\|Ga0134065_10264571	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300010337\|Ga0134062_10458880	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300010366\|Ga0126379_10790555	All Organisms → cellular organisms → Bacteria → Acidobacteria	1047	Open in IMG/M
3300010373\|Ga0134128_12944271	Not Available	524	Open in IMG/M
3300010391\|Ga0136847_13364133	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	631	Open in IMG/M
3300010400\|Ga0134122_10490202	Not Available	1109	Open in IMG/M
3300010400\|Ga0134122_10832388	All Organisms → cellular organisms → Bacteria	885	Open in IMG/M
3300011416\|Ga0137422_1060563	All Organisms → cellular organisms → Bacteria → Proteobacteria	909	Open in IMG/M
3300012203\|Ga0137399_10201253	All Organisms → cellular organisms → Bacteria	1617	Open in IMG/M
3300012353\|Ga0137367_10747927	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	680	Open in IMG/M
3300012360\|Ga0137375_10147313	All Organisms → cellular organisms → Bacteria	2306	Open in IMG/M
3300012360\|Ga0137375_11382271	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300012362\|Ga0137361_11585079	Not Available	576	Open in IMG/M
3300012893\|Ga0157284_10053603	All Organisms → cellular organisms → Bacteria → Proteobacteria	929	Open in IMG/M
3300012922\|Ga0137394_10984344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	701	Open in IMG/M
3300012944\|Ga0137410_11750721	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300012957\|Ga0164303_11272379	Not Available	543	Open in IMG/M
3300014318\|Ga0075351_1125408	Not Available	583	Open in IMG/M
3300014326\|Ga0157380_13069769	Not Available	532	Open in IMG/M
3300014326\|Ga0157380_13159951	All Organisms → cellular organisms → Bacteria → Acidobacteria	526	Open in IMG/M
3300014745\|Ga0157377_10308045	Not Available	1048	Open in IMG/M
3300014880\|Ga0180082_1057484	Not Available	835	Open in IMG/M
3300015371\|Ga0132258_10021905	All Organisms → cellular organisms → Bacteria	13973	Open in IMG/M
3300015371\|Ga0132258_13456148	All Organisms → cellular organisms → Bacteria	1083	Open in IMG/M
3300018063\|Ga0184637_10123075	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1599	Open in IMG/M
3300018482\|Ga0066669_11278420	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300021081\|Ga0210379_10175140	Not Available	919	Open in IMG/M
3300025319\|Ga0209520_10583168	All Organisms → cellular organisms → Bacteria → Acidobacteria	645	Open in IMG/M
3300025544\|Ga0208078_1080320	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300025908\|Ga0207643_10382286	All Organisms → cellular organisms → Bacteria	888	Open in IMG/M
3300025926\|Ga0207659_10320561	All Organisms → cellular organisms → Bacteria → Proteobacteria	1278	Open in IMG/M
3300025940\|Ga0207691_11197397	Not Available	630	Open in IMG/M
3300025942\|Ga0207689_10303272	All Organisms → cellular organisms → Bacteria	1324	Open in IMG/M
3300025945\|Ga0207679_11708380	Not Available	576	Open in IMG/M
3300025981\|Ga0207640_10230292	All Organisms → cellular organisms → Bacteria	1425	Open in IMG/M
3300026075\|Ga0207708_10427916	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300026075\|Ga0207708_10435119	Not Available	1090	Open in IMG/M
3300026095\|Ga0207676_10103189	All Organisms → cellular organisms → Bacteria	2369	Open in IMG/M
3300026216\|Ga0209903_1059826	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300027429\|Ga0207616_101324	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	672	Open in IMG/M
3300027880\|Ga0209481_10040914	All Organisms → cellular organisms → Bacteria → Proteobacteria	2126	Open in IMG/M
3300027886\|Ga0209486_10273253	All Organisms → cellular organisms → Bacteria → Proteobacteria	985	Open in IMG/M
3300027909\|Ga0209382_11470349	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300028380\|Ga0268265_11789797	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300028799\|Ga0307284_10237433	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300031152\|Ga0307501_10124096	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300031421\|Ga0308194_10336567	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300031562\|Ga0310886_10900564	Not Available	562	Open in IMG/M
3300031720\|Ga0307469_10309584	All Organisms → cellular organisms → Bacteria	1305	Open in IMG/M
3300031847\|Ga0310907_10249132	All Organisms → cellular organisms → Bacteria → Proteobacteria	873	Open in IMG/M
3300031854\|Ga0310904_10508415	Not Available	809	Open in IMG/M
3300031854\|Ga0310904_11081819	Not Available	574	Open in IMG/M
3300031943\|Ga0310885_10476925	All Organisms → cellular organisms → Bacteria → Proteobacteria	676	Open in IMG/M
3300031944\|Ga0310884_10755308	Not Available	592	Open in IMG/M
3300032012\|Ga0310902_10400772	All Organisms → cellular organisms → Bacteria → Proteobacteria	873	Open in IMG/M
3300032075\|Ga0310890_10043985	All Organisms → cellular organisms → Bacteria → Proteobacteria	2511	Open in IMG/M
3300032144\|Ga0315910_11150946	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300032174\|Ga0307470_11216146	Not Available	613	Open in IMG/M
3300032180\|Ga0307471_102646135	Not Available	636	Open in IMG/M
3300033433\|Ga0326726_10587162	All Organisms → cellular organisms → Bacteria	1070	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	62.96%
Host-Associated	Host-Associated	37.04%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	56.48%
Plants	Host-Associated → Plants	36.11%
Aquatic	Environmental → Aquatic	6.48%
Human	Host-Associated → Human	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.56%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.37%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.96%
Sediment	Environmental → Aquatic → Sediment	3.70%
Roots	Host-Associated → Plants → Roots	2.78%
Freshwater	Environmental → Aquatic → Freshwater	1.85%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.93%
Peat	Environmental → Terrestrial → Peat	0.93%
Digestive System	Host-Associated → Human → Digestive System	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.30%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.67%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.19%
Loam	Environmental → Terrestrial → Soil → Loam	7.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.70%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.78%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.78%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.85%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.93%
Lake	Environmental → Aquatic → Freshwater → Lake	0.93%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.93%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.19%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.33%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.41%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.63%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.70%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.78%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.78%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.93%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.93%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	0.93%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.93%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.93%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	12.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.41%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.56%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	5.56%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.63%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.70%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.78%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	2.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.78%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.85%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.85%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.93%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.93%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	0.93%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.93%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.93%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.93%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.93%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.93%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.93%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009444	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011416	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT551_2	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300014318	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D1_rd	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014880	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_16_10D	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300025319	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 1	Environmental	Open in IMG/M
3300025544	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026216	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil leachate replicate DNA2013-051 (SPAdes)	Environmental	Open in IMG/M
3300027429	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A5a-10 (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E4A_10670800	2170459003	Grass Soil	IVLNWTGALKGDEIAFTRGMDGGQGQTQQFTAKRQK
JGI11615J12901_106435772	3300000953	Soil	DGTIDKTNIKFKTTQQGRGGEVTFEWTGTLKGDELAMKRMATGREGAPQEFTLKREK*
Ga0062590_1026218861	3300004157	Soil	DLKFKTKQQGRGGEVILTWTGTLKGDEIAFSRMPEGGQAVMFTAKRQK*
Ga0058860_100185162	3300004801	Host-Associated	KQMGRGGEVTLNWSGTLKGDEIAFTRMAEGGQGQPQEFTLKRMQ*
Ga0062594_1011861422	3300005093	Soil	GRGGEITLNWSGTLKGDEIAFTRMAEGGQGQAQEFTLKRQQ*
Ga0065715_107134582	3300005293	Miscanthus Rhizosphere	MGRGGEVTLNWSGTLKGDEIAFTRMAEGGQGQAQEFTLKRMQ*
Ga0065707_109569752	3300005295	Switchgrass Rhizosphere	RGGEVTLNWSGTLKGDEIAFTRMAEGGQGQAQEFTLKRMQ*
Ga0065707_110184602	3300005295	Switchgrass Rhizosphere	QGRGGEVTFEWSGTLKGDEIAMKRSVAGREGAPQEFTLKREK*
Ga0066388_1058014911	3300005332	Tropical Forest Soil	KQMGRGGEVTLNWSGTLKGDEIAFTRMQDGGQGQPQEFTLKRMQ*
Ga0068869_1020433961	3300005334	Miscanthus Rhizosphere	GMLKFKTKQMGRGGEVTLNWSGTLKGDEIAFTRMAEGGQGQAQEFTLKRMK*
Ga0070682_1019861282	3300005337	Corn Rhizosphere	LKFKTTQQGRGGEVTFEWTGTLKGDEIAMKRSVEGREGGPQEFTLKRQ*
Ga0070675_1000457324	3300005354	Miscanthus Rhizosphere	VTHQKGRGGQVTFNWDGMLKGDEIAMKRSVEGREGGPQEFTRKRQ*
Ga0070700_1002066624	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MLKFKTKQMGRGGEITLNWSGTLKGDEIAFTRMAEGGQGQAQEFTLKRQQ*
Ga0070700_1008562692	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VTHQKGRGGQVTFNWDGMLKGDEIAMKRSVEGREGGPQEFTLKRQ*
Ga0066681_106243991	3300005451	Soil	GGEVTLNWSGTLKGDEIAFTRAQEGGQGQPVEFTLKREK*
Ga0068857_1010721892	3300005577	Corn Rhizosphere	ANNALKFVTHQMGRGGQVTFNWDGTLKGDEIAMKRAVEGREGGPQEFTLKRQ*
Ga0068864_1001831931	3300005618	Switchgrass Rhizosphere	QMGRGGEVVMSWAGTLKGDEIAFSRTPEGGQAQTFTAKRQK*
Ga0066905_1008400782	3300005713	Tropical Forest Soil	GEVTLNWSGALKGDEIAFTRMQDGGQGQPQEFTLKRMQ*
Ga0066903_1036422852	3300005764	Tropical Forest Soil	AEVTMSWSGTVKGDEIAMTRTVEGGQGQSQEFTLKRQK*
Ga0068860_1025474231	3300005843	Switchgrass Rhizosphere	GRGGQVTFNWDGMLKGDEIAMKRSVEGREGGPQEFTLKRQ*
Ga0068862_1008712213	3300005844	Switchgrass Rhizosphere	ISGSALKFKSKQMGRGGEIVLNWTGTLKGDEIAMSRMAEGGQGQAQEFTLKRQK*
Ga0075432_104784211	3300006058	Populus Rhizosphere	IEKTALKFKTTQQGRGGQVTFNWSGTLKGDEIAMSRAAEGGQGQTQEFVLKRQP*
Ga0075018_100900482	3300006172	Watersheds	FKTKQQGRGGEVVFSWTGTVKGDEIAFSRTPEGGQAQTFTAKRQK*
Ga0097621_1014237471	3300006237	Miscanthus Rhizosphere	LNWSGTLKGDEIAFTRMAEGGQGQAQEFTLKRMK*
Ga0068871_1009555701	3300006358	Miscanthus Rhizosphere	MGRGGEINLSWSGTVKGDEIAMTRTVEGGQGQSQEFTLKRQK*
Ga0068871_1010771622	3300006358	Miscanthus Rhizosphere	ISGSTLKFKTKQMGRGGEVVLNWTGTVKGDEIAFTRGAEGATPVEFTVKRSKE*
Ga0079222_119466222	3300006755	Agricultural Soil	NMLKFKTTQQGRGGEITLTWTGTLKGDEIAFSRMPEGGQAQEFVLKRK*
Ga0075430_1013829871	3300006846	Populus Rhizosphere	TKQQGRGGEITLNWTGTLKGDEIAMSRMAEGGQGQAQEFTLKRAK*
Ga0075431_1013120543	3300006847	Populus Rhizosphere	GRGGEITLNWTGTLKGDEIAMSRMAEGGQGQAQEFTLKRAK*
Ga0075425_1015599241	3300006854	Populus Rhizosphere	GEINISWSGTVKGDEIAMTRTIEGGQGQPQEFTLKRQK*
Ga0075425_1017396622	3300006854	Populus Rhizosphere	MGRGGEVTVSWSGRINGEVPEIVMKRTVEDGQGQPQEFTLKRQQP*
Ga0075434_1008804461	3300006871	Populus Rhizosphere	GGEVTLNWSGTLKGDEIAFTRMAEGGQGEPQQFTLKRMQ*
Ga0068865_1001174901	3300006881	Miscanthus Rhizosphere	GRGGEVTLNWSGTLKGDEIAFTRMAEGGQGQAQEFTLKRMQ*
Ga0075424_1028646291	3300006904	Populus Rhizosphere	KFKTTQMGRGGNEVNMSWSGTLKGDEIAMTRTVEGGQGQPQEFTLKRQK*
Ga0079216_114251403	3300006918	Agricultural Soil	TLNWSGTLKGDEIAMSRKAEGGEGQAQEFTLKREK*
Ga0079219_102372211	3300006954	Agricultural Soil	GEVTLNWTGTLKGDEIAFTRMAEGGQGQAQEFTLKRQN*
Ga0079219_112794171	3300006954	Agricultural Soil	LNWSGTLKGDEIAFSRMAEGGQGEPQQFTLKRMQ*
Ga0079218_103721041	3300007004	Agricultural Soil	ALKFKTQQQGRGGNQITLDWSGTLKGDEIAMSRKAEGGEGQAQEFTLKREK*
Ga0075435_1008349832	3300007076	Populus Rhizosphere	GGEVTLNWSGTLKGDEIAFSRMAEGGQGEPQQFTLKRMQ*
Ga0075418_130422411	3300009100	Populus Rhizosphere	GGEITLNWTGTLKGDEIAMSRMAEGGQGQAQEFTLKRAK*
Ga0066709_1013795991	3300009137	Grasslands Soil	RGGQVTYSWTGTVKGDEIAFSRTPEGGQAQQFTAKRQKS*
Ga0114129_127339992	3300009147	Populus Rhizosphere	ALKFKTTQQGRGGQVTFSWSGPLKGDEIAMSRMAEGGQGQNQEFVLKRQP*
Ga0075423_113225962	3300009162	Populus Rhizosphere	MGRGGNEVTLNWSGTVKGDEIAMTRAIEGGQGQSQELTLKRQK*
Ga0075423_128420271	3300009162	Populus Rhizosphere	TLNWSGTLKGDEIAFSRMAEGGQGEPQQFTLKRMQ*
Ga0114945_110463652	3300009444	Thermal Springs	LSYAGTLKGDEIAFKRMAEGGQGQSQDFVAKRQK*
Ga0105237_112306071	3300009545	Corn Rhizosphere	KQMGRGGEVTLNWSGTLKGDEIAFTRMAEGGQGQAQEFTLKRMK*
Ga0126311_110273732	3300010045	Serpentine Soil	QMGRGGEIVFNWTGTVKGDEIAFSRMAEGGQGQAQEFSLKKQK*
Ga0126382_124393691	3300010047	Tropical Forest Soil	TQQGRGGEVTMEWTGTLKGDEIAMKRSVAGREGAPQEFTLKREK*
Ga0134065_102645712	3300010326	Grasslands Soil	LNWSGTLKGYEIAFTRAQEGGQGQPVEFTLKREK*
Ga0134062_104588801	3300010337	Grasslands Soil	SKQMGRGGEVTLDWSGTLKGDEIAFTRMAEGGQGQPQEFTLKRQK*
Ga0126379_107905551	3300010366	Tropical Forest Soil	KIAFKSTQMGRGGEINLSWSGTLKGDEIAMTRAVEGGQGQSQEFTLKRQK*
Ga0134128_129442711	3300010373	Terrestrial Soil	QMGRGGEVTLDWSGTLKGDEIAFTRMAEGGQGQPMEFTLKRQK*
Ga0136847_133641331	3300010391	Freshwater Sediment	QQGRGGEVTMSWSGTVKGDEIAFSRMVEGGQGQAQEFTLKRQK*
Ga0134122_104902021	3300010400	Terrestrial Soil	KSVQQGRGGQVTMNWAGTVKGDEIAFTRTPEGGQAVEFTAKRQK*
Ga0134122_108323882	3300010400	Terrestrial Soil	LKFKTKQMGRGGEVTLDWSGTLKGDEIAFTRMAEGGQGQPMEFTLKRQK*
Ga0137422_10605631	3300011416	Soil	FKTQQQGRGGTPVTLNWSGTLKGDEIAMSRKAEGGEGQAQEFTLKREK*
Ga0137399_102012533	3300012203	Vadose Zone Soil	GEVTLNWSGTLKGDEIAFTRMAEGGQGQPQEFTLKRQQ*
Ga0137367_107479272	3300012353	Vadose Zone Soil	KQMGRGGEIMMAWAGTLKGDEIAFTRTPEGGQAQTFTAKRQK*
Ga0137375_101473133	3300012360	Vadose Zone Soil	NGMLKFKTKQMGRGGEVTLAWSGTLKGDEIAFTRMAEGGQGQPMEFTLKREK*
Ga0137375_113822711	3300012360	Vadose Zone Soil	GRGGEVTFEWTGTLKGDELAMKRMATGREGAPQEFTLKREK*
Ga0137361_115850792	3300012362	Vadose Zone Soil	KSKQMGRGGEVTLNWSGTLKGDEIAFTRAQEGGQGQPVEFTLKREK*
Ga0157284_100536033	3300012893	Soil	KFKTKQMGRGGEVVFNWSGTLKGDEIAMSRKAEGGEGQAQDFTLKREK*
Ga0137394_109843441	3300012922	Vadose Zone Soil	TKQMGRGGEVTLNWSGTLKGSEIAFTRMAEGGQGQPVEFTLKRQ*
Ga0137410_117507211	3300012944	Vadose Zone Soil	LKFKSTQMGRGGEINMSWSGTLTGDEIAFTRTIEGGQGQSQEFTLKRQK*
Ga0164303_112723792	3300012957	Soil	GMLKFKTKQMGRGGEVTLNWSGTLKGDEIAFSRMAEGGQGEQQQFTLKRMQ*
Ga0075351_11254081	3300014318	Natural And Restored Wetlands	GRGGGAPVTLNWSGILKGDEIAMSRMAEGGQGQAQEFVLKRQK*
Ga0157380_130697692	3300014326	Switchgrass Rhizosphere	NQVTLNWSGTLKGDEIAMSRKAEGGEGQAQDFTLKREK*
Ga0157380_131599512	3300014326	Switchgrass Rhizosphere	SGSDLKFKTKQQGRGGEVILTWTGTLKGDEIAFSRMPEGGQAVMFTAKRQK*
Ga0157377_103080451	3300014745	Miscanthus Rhizosphere	MGRGGQVTFNWDGMLKGDEIAMKRSVEGREGGPQEFTRKRQ*
Ga0180082_10574842	3300014880	Soil	GRGGEITLDWSGALKGDEIAFTRMAEGGQGQPQEFTLKRQQ*
Ga0132258_1002190518	3300015371	Arabidopsis Rhizosphere	LNWAGTLKGDEIAMSRMAEGGQGQAQEFVLKRQPWTSY*
Ga0132258_134561483	3300015371	Arabidopsis Rhizosphere	LNWSGTLKGDEIAFTRMAEGGQGQPQEFTLKRMQ*
Ga0184637_101230751	3300018063	Groundwater Sediment	RVRRGVQQQGRGGGAPVTLNWTGTLKGDEIAMSRMPEGGQAVDFVLKRQK
Ga0066669_112784201	3300018482	Grasslands Soil	VTYSWTGTVKGDEIAFSRTPEGGQAQQFTAKRQKS
Ga0210379_101751402	3300021081	Groundwater Sediment	GGALKFKTQQQGRGGGAPVTLNWSGTLKGDEIAMTRMAEGGQGQAQEFVLKRQK
Ga0209520_105831682	3300025319	Soil	QQQGRGGQVTFNWSGTLKGDEIAMSRMAEGGQGQAQEFVLKRQK
Ga0208078_10803201	3300025544	Arctic Peat Soil	MGRGGEIVLSWTGTLKGDEIAFSRTPEGGQAQTFTAKRQK
Ga0207643_103822862	3300025908	Miscanthus Rhizosphere	VTHQKGRGGQVTFNWDGMLKGDEIAMKRSVEGREGGPQEFTRKRQ
Ga0207659_103205611	3300025926	Miscanthus Rhizosphere	GGEIVLNWTGTLKGDEIAMSRMAEGGQGQAQEFTLKRQK
Ga0207691_111973971	3300025940	Miscanthus Rhizosphere	NALKFVTHQMGRGGEVTFNWDGTLKGDEIAMKRSVEGREGGPQEFTLKRQ
Ga0207689_103032723	3300025942	Miscanthus Rhizosphere	KFKTTQQGRGGEVVFEWTGTLKGDEIAMKRMVTGREGQPQEFTLKREK
Ga0207679_117083802	3300025945	Corn Rhizosphere	MGRGGEVTLNWSGTLKGDEIAFTRMAEGGQGQAQEFTLKRQQ
Ga0207640_102302921	3300025981	Corn Rhizosphere	VTLNWSGTLKGDEIAFTRMAEGGQGQPQEFTLKRMQ
Ga0207708_104279161	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MLKFKTKQMGRGGEITLNWSGTLKGDEIAFTRMAEGGQGQAQEFTLKRQQ
Ga0207708_104351191	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	LKFVTHQMGRGGQVTFNWDGTLKGDEIAMKRAVEGREGGPQEFTLKRQ
Ga0207676_101031891	3300026095	Switchgrass Rhizosphere	GADLKFKTKQMGRGGEVVMSWAGTLKGDEIAFSRTPEGGQAQTFTAKRQK
Ga0209903_10598262	3300026216	Soil	FKTKQMGRGGEIVLNWTGTLKGDEIAFSRMAEGGQGQAQTFTAKRQK
Ga0207616_1013241	3300027429	Soil	FKTKQMGRGGEVTLNWSGTLKGDEIAFTRMADGGQGQPQEFTLKRMQ
Ga0209481_100409143	3300027880	Populus Rhizosphere	GSALKFKTKQMGRGGEITLNWTGTLKGDEIAMSRMAEGGQGQAQEFTLKRAK
Ga0209486_102732531	3300027886	Agricultural Soil	ALKFKTQQQGRGGNQITLDWSGTLKGDEIAMSRKAEGGEGQAQEFTLKREK
Ga0209382_114703493	3300027909	Populus Rhizosphere	QQGRGGEITLNWTGTLKGDEIAMSRMAEGGQGQAQEFTLKRAK
Ga0268265_117897972	3300028380	Switchgrass Rhizosphere	MGRGGNEVNMSWSGTVKGDEIAMTRTIEGGQGQAQEFTLKREK
Ga0307284_102374331	3300028799	Soil	KFKSKQMGRGGEVTLNWSGTLKGDEIAFTRMAEGGQGQPVEFTLKREK
Ga0307501_101240962	3300031152	Soil	MLKFKTKQMGRGGEITLDWSGTLKGDEIAFTRMAEGGQGQAQEFTLKRQ
Ga0308194_103365671	3300031421	Soil	NIKFKSKQQGRGGEVVMTWTGTLKGDEIAFSRQPEGGQAVEFTAKRQK
Ga0310886_109005642	3300031562	Soil	VTLNWSGTLKGDEIAMSRKAEGGEGAAQEFVLKREK
Ga0307469_103095841	3300031720	Hardwood Forest Soil	ANGTLKFRTKQMGRGGEITLNWSGILKGDEIAFTRMAEGGQGQPQEFTLKRQQ
Ga0310907_102491323	3300031847	Soil	LKFKSKQMGRGGEIVLNWTGTLKGDEIAMSRMAEGGQGQAQEFTLKRQK
Ga0310904_105084151	3300031854	Soil	GGQITFNWDGTLKGDEIAMKRSVEGREGGPQEFTLKRQ
Ga0310904_110818191	3300031854	Soil	EVTLDWSGALKGDEIAFTRMAEGGQGQPQEFTLKRQ
Ga0310885_104769253	3300031943	Soil	TLNWSGTLKGDEIAMSRKAEGGEGQAQDFTLKREK
Ga0310884_107553082	3300031944	Soil	QVTFNWDGMLKGDEIAMKRSVEGREGGPQEFTLKRQ
Ga0310902_104007721	3300032012	Soil	ALKFKSKQMGRGGEIVLNWTGTLKGDEIAMSRMAEGGQGQAQEFTLKRQK
Ga0310890_100439851	3300032075	Soil	SKQMGRGGEIVLNWTGTLKGDEIAMSRMAEGGQGQAQEFTLKRQK
Ga0315910_111509461	3300032144	Soil	KTKQQGRGGNEITLNWAGTLKGDEIAMSRMADGGQGQAQEFTLKREK
Ga0307470_112161462	3300032174	Hardwood Forest Soil	EASLSGSTVKFKTKQMGRGGEVILNWTGTVKGEEIAFSRMAEGGQGQAQEFTLKKQK
Ga0307471_1026461352	3300032180	Hardwood Forest Soil	ITLNWSGALKGDEIAFTRMAEGGQGQAQEFTLKRQQ
Ga0326726_105871621	3300033433	Peat Soil	GRGGEVTLNWSGTLKGDEIAFTRAQDGGQGQPVEFTLKREK

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090831

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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