Metagenome / Metatranscriptome Family F090824

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090824
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	59 residues
Representative Sequence	MLEPEDFNSENYRICWPAILAVFAVQMIVLITLSIAVANHSSFGTASSTDVKAKALKR
Number of Associated Samples	88
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	84.26 %
% of genes near scaffold ends (potentially truncated)	24.07 %
% of genes from short scaffolds (< 2000 bps)	86.11 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (55.556 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (26.852 % of family members)
Environment Ontology (ENVO)	Unclassified (37.963 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (46.296 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.49% β-sheet: 0.00% Coil/Unstructured: 46.51%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00149	Metallophos	2.78
PF00072	Response_reg	1.85
PF13011	LZ_Tnp_IS481	1.85
PF12773	DZR	1.85
PF09140	MipZ	1.85
PF03330	DPBB_1	1.85
PF04073	tRNA_edit	1.85
PF02482	Ribosomal_S30AE	0.93
PF00536	SAM_1	0.93
PF04185	Phosphoesterase	0.93
PF10009	DUF2252	0.93
PF05231	MASE1	0.93
PF09624	DUF2393	0.93
PF02776	TPP_enzyme_N	0.93
PF08388	GIIM	0.93
PF14903	WG_beta_rep	0.93
PF07238	PilZ	0.93
PF02371	Transposase_20	0.93
PF00135	COesterase	0.93
PF02705	K_trans	0.93
PF00903	Glyoxalase	0.93
PF08494	DEAD_assoc	0.93
PF04392	ABC_sub_bind	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	Cell cycle control, cell division, chromosome partitioning [D]	1.85
COG0642	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.93
COG1201	Lhr-like helicase	Replication, recombination and repair [L]	0.93
COG1544	Ribosome-associated translation inhibitor RaiA	Translation, ribosomal structure and biogenesis [J]	0.93
COG2272	Carboxylesterase type B	Lipid transport and metabolism [I]	0.93
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.93
COG3158	K+ uptake protein Kup	Inorganic ion transport and metabolism [P]	0.93
COG3447	Integral membrane sensor domain MASE1	Signal transduction mechanisms [T]	0.93
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.93
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.93
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.56 %
Unclassified	root	N/A	43.52 %
unclassified Hyphomonas	no rank	unclassified Hyphomonas	0.93 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.56 %
Unclassified	root	N/A	43.52 %
Hyphomonas sp.	species	unclassified Hyphomonas → Hyphomonas sp.	0.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.56 %
Unclassified	root	N/A	43.52 %
Hyphomonas sp.	species	unclassified Hyphomonas → Hyphomonas sp.	0.93 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	49.07 %
Unclassified	root	N/A	43.52 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.78 %
Hyphomonas sp.	species	unclassified Hyphomonas → Hyphomonas sp.	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.52 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	39.81 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.78 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.85 %
Hyphomonas sp.	species	unclassified Hyphomonas → Hyphomonas sp.	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.52 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	32.41 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.78 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.85 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.93 %
Hyphomonas sp.	species	unclassified Hyphomonas → Hyphomonas sp.	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.52 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	26.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.85 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.85 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.93 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.93 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.93 %
Hyphomonas sp.	species	unclassified Hyphomonas → Hyphomonas sp.	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.52 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	21.30 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.85 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.93 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.93 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.93 %
Hyphomonas sp.	species	unclassified Hyphomonas → Hyphomonas sp.	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.52 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	4.63 %
Bradyrhizobium canariense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense	2.78 %
Kitasatospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Kitasatospora	1.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.85 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.93 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.93 %
Methylobacterium gnaphalii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium gnaphalii	0.93 %
Paraburkholderia humisilvae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia humisilvae	0.93 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.93 %
Hyphomonas sp.	species	unclassified Hyphomonas → Hyphomonas sp.	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.52 %
Bradyrhizobium canariense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense	2.78 %
Kitasatospora acidiphila	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Kitasatospora → Kitasatospora acidiphila	1.85 %
Bradyrhizobium sp. CCGUVB1N3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3	1.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.85 %
Bradyrhizobium sp. AUGA SZCCT0431	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0431	0.93 %
Bradyrhizobium sp. JYMT SZCCT0428	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	0.93 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.93 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.93 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.93 %
Methylobacterium gnaphalii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium gnaphalii	0.93 %
Paraburkholderia humisilvae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia humisilvae	0.93 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.93 %
Hyphomonas sp.	species	unclassified Hyphomonas → Hyphomonas sp.	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_113783289	Not Available	1218	Open in IMG/M
3300001593\|JGI12635J15846_10463364	Not Available	753	Open in IMG/M
3300001661\|JGI12053J15887_10139370	Not Available	1283	Open in IMG/M
3300001661\|JGI12053J15887_10337950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	730	Open in IMG/M
3300002245\|JGIcombinedJ26739_100469436	Not Available	1136	Open in IMG/M
3300004091\|Ga0062387_100994365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	642	Open in IMG/M
3300004152\|Ga0062386_100817363	Not Available	768	Open in IMG/M
3300004157\|Ga0062590_100970175	Not Available	804	Open in IMG/M
3300004479\|Ga0062595_101427761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	633	Open in IMG/M
3300004479\|Ga0062595_101608942	Not Available	606	Open in IMG/M
3300005177\|Ga0066690_10315073	All Organisms → cellular organisms → Bacteria → Proteobacteria	1058	Open in IMG/M
3300005181\|Ga0066678_10612151	Not Available	724	Open in IMG/M
3300005334\|Ga0068869_102045218	Not Available	514	Open in IMG/M
3300005467\|Ga0070706_101197027	unclassified Hyphomonas → Hyphomonas sp.	698	Open in IMG/M
3300005468\|Ga0070707_101425572	Not Available	659	Open in IMG/M
3300005543\|Ga0070672_101618583	Not Available	581	Open in IMG/M
3300005598\|Ga0066706_10197872	Not Available	1542	Open in IMG/M
3300005718\|Ga0068866_10201705	Not Available	1189	Open in IMG/M
3300005841\|Ga0068863_100494701	Not Available	1204	Open in IMG/M
3300005994\|Ga0066789_10078780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1425	Open in IMG/M
3300005994\|Ga0066789_10356934	Not Available	611	Open in IMG/M
3300006041\|Ga0075023_100053338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1275	Open in IMG/M
3300006041\|Ga0075023_100239583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	720	Open in IMG/M
3300006050\|Ga0075028_100612505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense	648	Open in IMG/M
3300006051\|Ga0075364_10162959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1506	Open in IMG/M
3300006055\|Ga0097691_1054645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1361	Open in IMG/M
3300006172\|Ga0075018_10356855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense	734	Open in IMG/M
3300007265\|Ga0099794_10751075	Not Available	521	Open in IMG/M
3300007788\|Ga0099795_10367082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	647	Open in IMG/M
3300009038\|Ga0099829_10106741	All Organisms → cellular organisms → Bacteria → Proteobacteria	2186	Open in IMG/M
3300009143\|Ga0099792_10501306	Not Available	760	Open in IMG/M
3300009143\|Ga0099792_11163506	Not Available	522	Open in IMG/M
3300009176\|Ga0105242_10149507	Not Available	2035	Open in IMG/M
3300009177\|Ga0105248_10136870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	2763	Open in IMG/M
3300009660\|Ga0105854_1193305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	673	Open in IMG/M
3300011120\|Ga0150983_14427082	Not Available	542	Open in IMG/M
3300011269\|Ga0137392_10098694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Kitasatospora → Kitasatospora acidiphila	2299	Open in IMG/M
3300011269\|Ga0137392_11137921	Not Available	638	Open in IMG/M
3300011270\|Ga0137391_10486232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1046	Open in IMG/M
3300011271\|Ga0137393_10128041	Not Available	2101	Open in IMG/M
3300012096\|Ga0137389_10184817	Not Available	1728	Open in IMG/M
3300012189\|Ga0137388_10130217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Kitasatospora → Kitasatospora acidiphila	2203	Open in IMG/M
3300012200\|Ga0137382_10646794	Not Available	756	Open in IMG/M
3300012206\|Ga0137380_11359901	All Organisms → cellular organisms → Bacteria → Proteobacteria	595	Open in IMG/M
3300012208\|Ga0137376_10167491	All Organisms → cellular organisms → Bacteria → Proteobacteria	1894	Open in IMG/M
3300012212\|Ga0150985_119228059	Not Available	527	Open in IMG/M
3300012212\|Ga0150985_119579282	Not Available	568	Open in IMG/M
3300012285\|Ga0137370_10893193	Not Available	550	Open in IMG/M
3300012357\|Ga0137384_10196816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1686	Open in IMG/M
3300012359\|Ga0137385_11580976	Not Available	520	Open in IMG/M
3300012362\|Ga0137361_11408793	Not Available	620	Open in IMG/M
3300012363\|Ga0137390_10122469	Not Available	2576	Open in IMG/M
3300012683\|Ga0137398_10016595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3896	Open in IMG/M
3300012683\|Ga0137398_10390356	All Organisms → cellular organisms → Bacteria	947	Open in IMG/M
3300012683\|Ga0137398_10743525	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	683	Open in IMG/M
3300012683\|Ga0137398_10855620	Not Available	635	Open in IMG/M
3300012923\|Ga0137359_10820895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	805	Open in IMG/M
3300014501\|Ga0182024_10660339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1298	Open in IMG/M
3300014501\|Ga0182024_12134278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	615	Open in IMG/M
3300014501\|Ga0182024_12215519	Not Available	601	Open in IMG/M
3300015242\|Ga0137412_10367011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1119	Open in IMG/M
3300015245\|Ga0137409_10259203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1542	Open in IMG/M
3300015371\|Ga0132258_10901959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2232	Open in IMG/M
3300015371\|Ga0132258_10981380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0431	2134	Open in IMG/M
3300015371\|Ga0132258_11361137	Not Available	1793	Open in IMG/M
3300015372\|Ga0132256_101616606	Not Available	758	Open in IMG/M
3300015373\|Ga0132257_101149086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	981	Open in IMG/M
3300015374\|Ga0132255_101847027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	918	Open in IMG/M
3300015374\|Ga0132255_103679143	Not Available	652	Open in IMG/M
3300017792\|Ga0163161_11433010	Not Available	604	Open in IMG/M
3300018468\|Ga0066662_12554038	Not Available	539	Open in IMG/M
3300019868\|Ga0193720_1055017	Not Available	556	Open in IMG/M
3300019887\|Ga0193729_1186616	Not Available	719	Open in IMG/M
3300019996\|Ga0193693_1065548	Not Available	542	Open in IMG/M
3300020062\|Ga0193724_1114654	Not Available	537	Open in IMG/M
3300020580\|Ga0210403_10233274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1510	Open in IMG/M
3300021088\|Ga0210404_10339706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	832	Open in IMG/M
3300021170\|Ga0210400_10046447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3378	Open in IMG/M
3300021170\|Ga0210400_10150803	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1872	Open in IMG/M
3300021171\|Ga0210405_10855490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia humisilvae	694	Open in IMG/M
3300021420\|Ga0210394_10281188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1458	Open in IMG/M
3300021432\|Ga0210384_11042596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	720	Open in IMG/M
3300021479\|Ga0210410_10611236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	967	Open in IMG/M
3300021479\|Ga0210410_10633853	All Organisms → cellular organisms → Bacteria	947	Open in IMG/M
3300021861\|Ga0213853_11439373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1111	Open in IMG/M
3300022724\|Ga0242665_10164249	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300025482\|Ga0208715_1048164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	779	Open in IMG/M
3300025505\|Ga0207929_1093427	Not Available	563	Open in IMG/M
3300025899\|Ga0207642_10801699	Not Available	599	Open in IMG/M
3300025934\|Ga0207686_10428611	Not Available	1013	Open in IMG/M
3300026335\|Ga0209804_1146307	All Organisms → cellular organisms → Bacteria → Proteobacteria	1059	Open in IMG/M
3300026555\|Ga0179593_1240960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium gnaphalii	1683	Open in IMG/M
3300027439\|Ga0209332_1002706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3788	Open in IMG/M
3300027610\|Ga0209528_1030979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1183	Open in IMG/M
3300027645\|Ga0209117_1007299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3762	Open in IMG/M
3300027663\|Ga0208990_1126385	Not Available	690	Open in IMG/M
3300027738\|Ga0208989_10083406	Not Available	1093	Open in IMG/M
3300027846\|Ga0209180_10292998	Not Available	933	Open in IMG/M
3300027894\|Ga0209068_10021093	All Organisms → cellular organisms → Bacteria → Proteobacteria	3174	Open in IMG/M
3300027894\|Ga0209068_10335653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense	854	Open in IMG/M
3300027903\|Ga0209488_10090261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2289	Open in IMG/M
3300027908\|Ga0209006_10241481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1557	Open in IMG/M
3300027910\|Ga0209583_10082040	All Organisms → cellular organisms → Bacteria	1206	Open in IMG/M
3300027910\|Ga0209583_10173768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3	900	Open in IMG/M
3300027915\|Ga0209069_10127044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3	1250	Open in IMG/M
3300027915\|Ga0209069_10302924	All Organisms → cellular organisms → Bacteria → Proteobacteria	849	Open in IMG/M
3300031753\|Ga0307477_11169427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	500	Open in IMG/M
3300034090\|Ga0326723_0064241	All Organisms → cellular organisms → Bacteria → Proteobacteria	1564	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	82.41%
Host-Associated	Host-Associated	17.59%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.37%
Plants	Host-Associated → Plants	17.59%
Aquatic	Environmental → Aquatic	12.04%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.44%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.04%
Sediment	Environmental → Aquatic → Sediment	9.26%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.63%
Freshwater	Environmental → Aquatic → Freshwater	2.78%
Peat	Environmental → Terrestrial → Peat	0.93%
Roots	Host-Associated → Plants → Roots	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.85%
Loam	Environmental → Terrestrial → Soil → Loam	12.04%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	9.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.41%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.56%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.78%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.85%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.93%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.56%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.19%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.19%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	9.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.41%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.56%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.63%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.78%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.78%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	26.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	10.19%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	9.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.26%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.78%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	2.78%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	2.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.78%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.85%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.85%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.93%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009660	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-058	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019868	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s1	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019996	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a2	Environmental	Open in IMG/M
3300020062	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025482	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025505	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027439	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1137832892	3300000956	Soil	MLEPEDFNTENYRICWPAILAVFAVQMMVLITLSIAVANHSSFATASSTDVKTKALKR*
JGI12635J15846_104633642	3300001593	Forest Soil	MLEPEDFNSQNRICWPAILAVFAVQMIVLITLSIAVANHSSFATASSTDVKAKTLKR*
JGI12053J15887_101393702	3300001661	Forest Soil	FNPEDYRICWPAILAVLAVQMIVLITLSVAVANHSRFATASSTDVKEAPEKVTEAK*
JGI12053J15887_103379502	3300001661	Forest Soil	MFVPEDFNSEKYRFCWPAILAVFAVQLIVLITLSIAVANHSSFVIASSTD
JGIcombinedJ26739_1004694362	3300002245	Forest Soil	MPTPEDFNSENSRICWPAILVVLAVQMIVLITLSIAVTNHSSFATASSTDVEAKHLKR*
Ga0062387_1009943652	3300004091	Bog Forest Soil	MLGPETFASENYRICWPAILAVFAVQMIVVIALSIAVADHSRFVTASSTGVKAPHRLVSY
Ga0062386_1008173632	3300004152	Bog Forest Soil	MFEPKDFDSANYRISWPSISAVFAVQMVVLIALAIAVANHSSFATASSTDVEAKPLKR*
Ga0062590_1009701752	3300004157	Soil	MFDPQQFDSENDRIWWPAIFAVLAIQMIVLIALSLAVANHSSFATASSTDTKANALKR*
Ga0062595_1014277611	3300004479	Soil	MLEPEDFKPENYRICWPAILAVFAVQMIVLITLSSVVANHSSFATASSTDVKAKALGGVDSRDSLLGANQIQGC
Ga0062595_1016089422	3300004479	Soil	DPEQFNAENDRISWPAIFAVFAVQMIVLIALSIAVANHSGFATDSSTDTKTNSLKR*
Ga0066690_103150731	3300005177	Soil	MLQPEDFHSEDYRICWPAILAVFAVQMIVLITLSIAVANHSSSATAPSTDVKAKSLKR*
Ga0066678_106121511	3300005181	Soil	MFAPEDFSSEKYRICWPAILAVLAVQLIVLITLLFAVANHTSVVIASSTDVHAKSSQDKDSRK*
Ga0068869_1020452181	3300005334	Miscanthus Rhizosphere	FNSENERIWWPAILAVLAVQMIVLIVLSIAVANHSSFATLSSTGTKVNPLKR*
Ga0070706_1011970272	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MLEPEDANSENYRICWPAILAVFAVQMIVLITLSIAVVNHSSFATASSTEVKAKPLRR*
Ga0070707_1014255721	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MLKPEDFNSENYRICWPAILAVFAVQMIVLITLSIAVANHSSFATASPTDVKTKALKR*
Ga0070672_1016185831	3300005543	Miscanthus Rhizosphere	ELIRGRPSLEGEAPMLDPEQFNSENERIWWPAILAVLAVQMIVLIVLSIAVANHSSFATLSSTGTKVNPLKR*
Ga0066706_101978721	3300005598	Soil	MFAPEDFSSEKYRICWPAILAVLAVQLIVLITLFFAVANHTSVVIASSTDVHAKSSQDKDSRK*
Ga0068866_102017053	3300005718	Miscanthus Rhizosphere	MFDPQQFDSENDRIWWPAIFAVLAVQMIVLIALSLAVANHSSFATASSTDTKATALKR*
Ga0068863_1004947011	3300005841	Switchgrass Rhizosphere	MFDPQQFDSENDRIWWPAIFAVLAIQMIVLIALSLAVANHSSFATASSTDTEANALKR*
Ga0066789_100787802	3300005994	Soil	MPKPEDFNPENNPIYWPAILAVFAVQLIVFFAVSIAVINHSSATASSPDAKAKVLKR*
Ga0066789_103569342	3300005994	Soil	MPKPEDFDPEHNPIHWPVILAVFAVQMIVLIAVSIAVINHSSSATASTQYVKAAAIKK*
Ga0075023_1000533382	3300006041	Watersheds	MFVPEDFNSENDRICWPAILAVLAVQMIVFITLSIAVANHSSFATASSADVGVKPLKR*
Ga0075023_1002395831	3300006041	Watersheds	MLDPEDFNSENYRICWPVILAVLAVQMIVLITLTIAVANHSSFARPLHPQMSAKPIKR*
Ga0075028_1006125052	3300006050	Watersheds	TMLDPEDFNSEDYRICWPAIFAVFAVQVVALIALFIAVANHSSFATTSPTAVKSEASALAK*
Ga0075364_101629593	3300006051	Populus Endosphere	MFDPEQFNSENERIWWPAILTVLAVQMVVLIALSIAVANHSSFATASPRDSKANSLER*
Ga0097691_10546452	3300006055	Arctic Peat Soil	MLEPEDFNSENYRICWPAILAVFAVQMIVLITLSIAVANHSSFGTASSTDVKAKALKR*
Ga0075018_103568551	3300006172	Watersheds	EDFNSEDYRICWPAIFAVFAVQVVALIALFIAVANHSSFATTSPTAVKSEASALAK*
Ga0099794_107510752	3300007265	Vadose Zone Soil	MLDPEEFNSENDRIWWPAILAVFAVQMIVLITLSIAVANHSSFATASSTDVKAKSAKTV
Ga0099795_103670822	3300007788	Vadose Zone Soil	GGATMLDPEEFNSENDRIWWPAILAVFAVQMIVLIALSIVAANHSSFATASSTDTKLNLLKR*
Ga0099829_101067412	3300009038	Vadose Zone Soil	MTALTPKREASMLEPEDFTSENYRICWPAILAVFAVQMIVLITLSIAVANHSSFATASPTDVKTKALKR*
Ga0099792_105013062	3300009143	Vadose Zone Soil	MFDPEQFNSENDRIWWPAILAVFAVQMIVLIALSIAVANHSSFATTSSTDTANSLKR*
Ga0099792_111635061	3300009143	Vadose Zone Soil	MLDPEEFNSENDRIWWPAILAVFAVQMIVLIALSIAVANHSSFATASSAGTKVNSLKR*
Ga0105242_101495072	3300009176	Miscanthus Rhizosphere	MFDPQQFDSENDRIWWPAIFAVLAVQMIVLIALSLAVANHSSFATASSTDTKANALKR*
Ga0105248_101368701	3300009177	Switchgrass Rhizosphere	MFDPQQFDSENDRIWWPAIFAVLAIQMIVLIALSLAVANHSSFATASSTDAKANALKR*
Ga0105854_11933052	3300009660	Permafrost Soil	MPEPENYRIYWPAILAVFAVQMVLLIAVSFAVANHSSVATASIPDIKVKHH
Ga0150983_144270821	3300011120	Forest Soil	MFDPEEFSSENYRICWPAILTVFALQMIVLIALSIAVANHSGFATAASTGVEAKPLKR*
Ga0137392_100986943	3300011269	Vadose Zone Soil	MLEPEDFNSENYRICWPAILAVFAVQIIVLITLSIAVANHSSFATASSTDVKTKALKR*
Ga0137392_111379211	3300011269	Vadose Zone Soil	MLEPEDFNSENYRICWPAILAVFVVQMIVLITLSIAVANHSSFATASS
Ga0137391_104862321	3300011270	Vadose Zone Soil	MFGPQDFYSESHRICWPAILAVFAVQMIVLITLSIAVTNHSGVATASTTEDVEAKPPRQ*
Ga0137393_101280411	3300011271	Vadose Zone Soil	ENYRICWPAILAFFVVQMIVLITLSIAVVNHSSFATASSTEVKTKALKR*
Ga0137389_101848171	3300012096	Vadose Zone Soil	MLEPEDFNSENYRICWPAILAVFVVQMIVLITLSIAVVNHSSFATASSTEVKTKALKR*
Ga0137388_101302173	3300012189	Vadose Zone Soil	MLEPDDFNLENYRICWPAILAVFAVQMIVLITLSIAVANHSNFATASSTDVKTKALKR*
Ga0137382_106467942	3300012200	Vadose Zone Soil	MLEPEDFHSEDYRICWPAILAVFAVQMIVLITLSIAVVNHSSSATAYSTDVKAKSLKK*
Ga0137380_113599011	3300012206	Vadose Zone Soil	MLQPEDFHSEDYRICWPAILAVFAVQMIVLITLSIAVAHHSSSATAPSTDVKAKSLKR*
Ga0137376_101674913	3300012208	Vadose Zone Soil	MLQPEDFHSEDYRICWPAILAVFAVQMIVLITLSIAVVNHSSSATASSTDVKAKSLKR*
Ga0150985_1192280591	3300012212	Avena Fatua Rhizosphere	MLEPEDFNSEDYRICWPAILAVFAVQMIVLTALSIAVAHHSSVATASSADVGAKMLKSKSLPATK*
Ga0150985_1195792822	3300012212	Avena Fatua Rhizosphere	RPTIPQKGRRPMFDPEQFNAEEERIWWPAILAVLAVQMVVLIALSIAVANHSSFATASSTDTKTNALKRQE*
Ga0137370_108931931	3300012285	Vadose Zone Soil	MLEPEDFHSEDYRICWPAILAVFAVQMIVLITLSIAVVNHSSSATASSTDVKAKSLKR*
Ga0137384_101968162	3300012357	Vadose Zone Soil	MFKPEDFDSENYRICWPTILAMFVVQMIVLITLSIAVANHSSFANASSTNVEAKSLKR*
Ga0137385_115809761	3300012359	Vadose Zone Soil	MLQPEDFHSEDYRSCWPAIMAVLAVRMIVLITLSIAVANHSSSAAAPSTDVKAKSLKR*
Ga0137361_114087931	3300012362	Vadose Zone Soil	MLEPEDFNSENYRICWPAILAVFTVQMIVLITLSIAVANHSSFATASPTDVKTKAL
Ga0137390_101224691	3300012363	Vadose Zone Soil	MLLPEDFNSENYRICWPAILAVFAVQIIVLITLSIAVANHSSFATASSTDVKTKALKR*
Ga0137398_100165952	3300012683	Vadose Zone Soil	MLDPEQFNSENDRIWWPAILAVFAVQMIVLIALSIAVANHSSFATASSAGTKVNSLKR*
Ga0137398_103903561	3300012683	Vadose Zone Soil	MPTPEDFNPENYRVYWPAILGVFAVQMAVLIAVSIAVANHSNIATASSPDVKAKLLKR*
Ga0137398_107435251	3300012683	Vadose Zone Soil	MLDPEEFNSENDRIWWPAILAVFAVQLTLLIALSSAVANHSSCATASPAGTKVNSLKR*
Ga0137398_108556202	3300012683	Vadose Zone Soil	MLDPEQFNSENDRVWWPAILAVFAVQMIVLIALSIVVANHSSFATASSTDTKLNLLKR*
Ga0137359_108208952	3300012923	Vadose Zone Soil	MLDPEEFTSENDRIWWPAILAVFAVQMIVLIALSIAVANHSSFATASSAGTKVNSLKR*
Ga0182024_106603393	3300014501	Permafrost	MPKPEDFNPEYDRINWPAILVVFAVQMVLLIALSIAVANRSSFATASSPPDVKARFQR*
Ga0182024_121342781	3300014501	Permafrost	MPKPEDFDPEHNPIHWPAILAVFAVQVIILIAVSIAVINHSSFATASTQDVKAAALKK*
Ga0182024_122155192	3300014501	Permafrost	MPKPEDFNPENDHIHWPAILVVFAVQMVLLIAVSIAVANHSSFATASSQDVKAKLLTR*
Ga0137412_103670112	3300015242	Vadose Zone Soil	MLDPEQFNSENDRVWWPAILAVFAVQMIVLIALSIAVANHSSFATASSTDTKVDLLRR*
Ga0137409_102592034	3300015245	Vadose Zone Soil	MLEPEDFHSENYRICWPAILAVFAVQVIVLIALSIAVTQHSSFATASSTVVKAKPLKGMDSPKAK*
Ga0132258_109019595	3300015371	Arabidopsis Rhizosphere	MLNPEEFNSENDRIWWPAILAVLAVQMIVLIALSIAVANHSGFATASSTDTKADSLKR*
Ga0132258_109813802	3300015371	Arabidopsis Rhizosphere	MFDPEQFNSENERIWWPAILTVLAVQIVVLIALSIAVANHSSFATASSPDPKANWLNR*
Ga0132258_113611375	3300015371	Arabidopsis Rhizosphere	TMFDPQQFDSENDRIWWPAIFAVLAIQMIVLIALSLAVANHSSFATASSTDAKANALKR*
Ga0132256_1016166061	3300015372	Arabidopsis Rhizosphere	MFDPEQFNAEEERIWWPAILTVLAVQLVVLIALSIAVANHSSFATASSTDIKATSLKR*
Ga0132257_1011490863	3300015373	Arabidopsis Rhizosphere	MLNPEEFNSENDRIWWPAILAVLAVQMIVLIALSIAVANHSGFATASSTDTKADSLTR*
Ga0132255_1018470273	3300015374	Arabidopsis Rhizosphere	DPEQFNAEEERIWWPAILTVLAVQMIVLIALSIAVANHSSFATPSSTDIKANSVNDR*
Ga0132255_1036791431	3300015374	Arabidopsis Rhizosphere	MFDPQQFDSENDRIWWPAIFAVLAVQMIVLIALSLAVANHSSFATASSTDAKATALKR*
Ga0163161_114330102	3300017792	Switchgrass Rhizosphere	MFDPQQFDSENDRIWWPAIFAVLAVQMIVLIALSLAVANHSSFATASSTDAKANALKR
Ga0066662_125540381	3300018468	Grasslands Soil	MLEPEDANSENYRICWPAILAVFAVQMIVLIILSIAVANHSSFATASSTDVKAKSLKR
Ga0193720_10550171	3300019868	Soil	MLDPQQFNSENDRIWWPAIFAVLAFQMIVLIALSIAVANHSSFATDSSTDTKANSLKR
Ga0193729_11866162	3300019887	Soil	MPTPEDFNPENSRICWPAILAVFAVQMIVLITLSIAVANHTDFATASSRAVKAGL
Ga0193693_10655481	3300019996	Soil	MLDPEQFNSENDRIWWPAIFAVLAVQMIVLIALSIAVANHSSFATDSSTDTRANSLKR
Ga0193724_11146541	3300020062	Soil	TTMPTPEDFNSENYRICWPAIWAVFAVQMIVLIVLSIAVVNHSSFATASSTDVKTTPLTSKDLPQAK
Ga0210403_102332742	3300020580	Soil	LTPEREATMFDPEEFNAEKHRLCWPVILAVFAVQMIVLIALSIAVANHSSFATASSTDVEPKPLKK
Ga0210404_103397062	3300021088	Soil	MFDPEEFNAEKHRLCWPAILAVFAVQMIVLIALSIAVANHSGFATASSTDVEPKPL
Ga0210400_100464475	3300021170	Soil	MLEPEDFQENYRICWPAILAVLAVQLIVLITVSVAVVNHSSFATASSRDVKAIAQKR
Ga0210400_101508032	3300021170	Soil	MLEPENVNLGKYRICWPAILAVFTVQMIVLITLSIAVANHSSFATASSTDVKAVDRRSAGCKGL
Ga0210405_108554901	3300021171	Soil	MLEPENVNLGKYRICWPAILAVFTVQMIVLITLSIAVANHSSFATASSTDVKAVDRRS
Ga0210394_102811882	3300021420	Soil	MFDPEEFSSENYRICWPAILTVFALQMIVLIALSIAVANHSGFATAASTGVEAKPLKR
Ga0210384_110425962	3300021432	Soil	MFKPGDFDSENYRICWPTILAVFVVQMIVLITLSIVVANHSSFATVSSTDVEAKPLKR
Ga0210410_106112363	3300021479	Soil	MFDPEEFNAEKHRLCWPAILAVFAVQMIVLIALSIAVANHSSFATASSTDVETKPLKR
Ga0210410_106338532	3300021479	Soil	MFDPEEFNAEKHRLCWPAILAVFAVQMIVLIALSIAVANHSSFATASSTDVEPKPLKK
Ga0213853_114393731	3300021861	Watersheds	MFGPEDFNSENRHICWPAILAVFAVQMIVLISLSIAVANHSSIATASSTDVEARPLIKQGLDGCRPPIC
Ga0242665_101642492	3300022724	Soil	ATMFDPEEFNAEKHRLCWPAILAVFAVQMIVLIALSIAVANHSSFATASSTDVEPKPLKK
Ga0208715_10481642	3300025482	Arctic Peat Soil	MPKPEDFNPENNPIYWPAILAVFAVQLIVFFAVSIAVINHSSATASSPDAKAKVLKR
Ga0207929_10934271	3300025505	Arctic Peat Soil	MPKPEDFDPEHNPIRWPAILAVFAVQMIVLIAVSIAVINHSSSATASTQDVKAAAVKK
Ga0207642_108016991	3300025899	Miscanthus Rhizosphere	MFDPQQFDSENDRIWWPAIFAVLAVQMIVLIALSLAVANHSSFATASSTDTKATALKR
Ga0207686_104286112	3300025934	Miscanthus Rhizosphere	MFDPQQFDSENDRIWWPAIFAVLAVQMIVLIALSLAVANHSSFATASSTDTKANALKR
Ga0209804_11463071	3300026335	Soil	MLQPEDFHSEDYRICWPAILAVFAVQMIVLITLSIAVANHSSSATAPSTDVKAKSLKR
Ga0179593_12409602	3300026555	Vadose Zone Soil	MFVPEDFNSEKYRFCWPAILAVFAVQLIVLITLSIAVANHSSFVIASSTDTNAKPLKT
Ga0209332_10027062	3300027439	Forest Soil	MFDPEEFNAEKYRLCWPAILAVFAVQMIVLIALSIAVANHSSFATASSTDVEAKPLTR
Ga0209528_10309792	3300027610	Forest Soil	MPTPEDFNSENSRICWPAILVVLAVQMIVLITLSIAVTNHSSFATASSTDVEAKHLKR
Ga0209117_10072995	3300027645	Forest Soil	MLEPEDFNSQNRICWPAILAVFAVQMIVLITLSIAVANHSSFATASSTDVKAKTLKR
Ga0208990_11263852	3300027663	Forest Soil	SYYNADPERDASMLDPEDFNSENYRICWPAILAVFVVQMIVLITLSIAVANHSSFATASSTDVKAKALKR
Ga0208989_100834062	3300027738	Forest Soil	MLEPEDFNPEDYRICWPAILAVLAVQMIVLITLSVAVANHSRFATASSTDVKEAPEKVTEAK
Ga0209180_102929982	3300027846	Vadose Zone Soil	MTALTPKREASMLEPEDFTSENYRICWPAILAVFAVQMIVLITLSIAVANHSSFATASPTDVKTKALKR
Ga0209068_100210933	3300027894	Watersheds	MLDPEDFNSENYRICWPVILAVLAVQMIVLITLTIAVANHSSFARPLHPQMSAKPIKR
Ga0209068_103356532	3300027894	Watersheds	MLDPEDFNSEDYRICWPAIFAVFAVQVVALIALFIAVANHSSFATTSPTAVKSEASALAK
Ga0209488_100902613	3300027903	Vadose Zone Soil	MLDPEQFNSENDRVWWPAILAVFAVQMIVLIALSIVVANHSSFATASSTDTKLNLLKR
Ga0209006_102414812	3300027908	Forest Soil	VPEDFNPENFRIHWPAILAVFAIQMVLLIAVSIAVTNHTSFATASSPNVKANPLTR
Ga0209583_100820401	3300027910	Watersheds	MFVPEDFNSENDRICWPAILAVLAVQMIVFITLSIAVANHSSFATASSADVGVKPLKR
Ga0209583_101737681	3300027910	Watersheds	MLDPEDFNSEDYRICWPAIFAVFAVQVVALIALFIAVANHSSFATTSP
Ga0209069_101270442	3300027915	Watersheds	MLDPEDFNSEDYRICWPAIFAVFAVQMVALIALFIAVANHSSFATTSPTAVKSEASALAK
Ga0209069_103029242	3300027915	Watersheds	SYHGADPEREATMFVPEDFNSENDRICWPAILAVLAVQMIVFITLSIAVANHSSFATASSADVGVKRLKR
Ga0307477_111694271	3300031753	Hardwood Forest Soil	GRAITELTLKGEASMFKPGDFDSENYRICWPTILAVFVVQMIVLITLSIVVANHSSFATVSSTDVEAKPLKR
Ga0326723_0064241_255_437	3300034090	Peat Soil	MPMFVPEDFNSENHRICWPAILAVFAVQMIVLITISIAVANHSSFATASSTDVQAKPLKR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090824

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences