Metagenome / Metatranscriptome Family F090820

Overview

Basic Information

• Family ID: F090820
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 108
• Average Sequence Length: 51 residues
• Representative Sequence: RNRVHVVGEVAASEVKAVKDFIGSQHMQDVFKRVNAMSTAPLEFIWLEELAP
• Number of Associated Samples: 91
• Number of Associated Scaffolds: 108

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 50.00 %
• % of genes near scaffold ends (potentially truncated): 0.93 %
• % of genes from short scaffolds (< 2000 bps): 0.93 %
• Associated GOLD sequencing projects: 85
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (99.074 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (21.296 % of family members)
• Environment Ontology (ENVO): Unclassified (42.593 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline) (38.889 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 31.25%
  β-sheet: 0.00%
  Coil/Unstructured: 68.75%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF07238	PilZ	2.78
PF03721	UDPG_MGDP_dh_N	2.78
PF13458	Peripla_BP_6	2.78
PF04392	ABC_sub_bind	1.85
PF00563	EAL	1.85
PF13751	DDE_Tnp_1_6	1.85
PF08734	GYD	1.85
PF00536	SAM_1	1.85
PF13406	SLT_2	0.93
PF00561	Abhydrolase_1	0.93
PF01293	PEPCK_ATP	0.93
PF03330	DPBB_1	0.93
PF01527	HTH_Tnp_1	0.93
PF07366	SnoaL	0.93
PF01425	Amidase	0.93
PF13185	GAF_2	0.93
PF03466	LysR_substrate	0.93
PF02515	CoA_transf_3	0.93
PF03073	TspO_MBR	0.93
PF08031	BBE	0.93
PF00005	ABC_tran	0.93
PF13581	HATPase_c_2	0.93
PF00589	Phage_integrase	0.93
PF13403	Hint_2	0.93
PF08388	GIIM	0.93
PF00557	Peptidase_M24	0.93
PF02705	K_trans	0.93
PF00903	Glyoxalase	0.93
PF05598	DUF772	0.93
PF00107	ADH_zinc_N	0.93
PF03461	TRCF	0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	2.78
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	2.78
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	2.78
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	2.78
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	2.78
COG1197	Transcription-repair coupling factor (superfamily II helicase)	Transcription [K]	1.85
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	1.85
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.85
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	1.85
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	1.85
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	1.85
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	1.85
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.93
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.93
COG1866	Phosphoenolpyruvate carboxykinase, ATP-dependent	Energy production and conversion [C]	0.93
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.93
COG3158	K+ uptake protein Kup	Inorganic ion transport and metabolism [P]	0.93
COG3476	Tryptophan-rich sensory protein TspO/CrtK (mitochondrial benzodiazepine receptor homolog)	Signal transduction mechanisms [T]	0.93

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.07 %
All Organisms	root	All Organisms	0.93 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.07 %
cellular organisms	root	All Organisms → cellular organisms	0.93 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.07 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.93 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.07 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.07 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.07 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.07 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.93 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300014169|Ga0181531_10023397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3550
3300032001|Ga0306922_11694159	Not Available	626

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.37%
Host-Associated	Host-Associated	4.63%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.00%
Aquatic	Environmental → Aquatic	45.37%
Plants	Host-Associated → Plants	3.70%
Fungi	Host-Associated → Fungi	0.93%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	44.44%
Freshwater	Environmental → Aquatic → Freshwater	40.74%
Peat	Environmental → Terrestrial → Peat	5.56%
Sediment	Environmental → Aquatic → Sediment	2.78%
Marine	Environmental → Aquatic → Marine	1.85%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.85%
Roots	Host-Associated → Plants → Roots	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.93%
Mycelium	Host-Associated → Fungi → Mycelium	0.93%

Type

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	40.74%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	26.85%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	10.19%
Loam	Environmental → Terrestrial → Soil → Loam	7.41%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.85%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.93%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.93%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.93%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.93%

Subtype

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	29.63%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.19%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	9.26%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	6.48%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.56%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.78%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.85%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.93%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.93%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.93%

Habitat

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	21.30%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	9.26%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	7.41%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	5.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.63%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.63%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.70%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.70%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.70%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.78%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.78%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	2.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.78%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.85%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.85%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	1.85%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.85%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	0.93%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.93%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.93%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.93%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.93%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental
3300004145	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2	Environmental
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental
3300005888	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_103	Environmental
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental
3300009621	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_150	Environmental
3300009629	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100	Environmental
3300009631	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100	Environmental
3300009660	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-058	Environmental
3300009661	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-062	Environmental
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental
3300009762	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40	Environmental
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental
3300010379	Sb_50d combined assembly	Environmental
3300011996	Permafrost microbial communities from Nunavut, Canada - A39_65cm_12M	Environmental
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental
3300012677	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ012 MetaG	Host-Associated
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental
3300015374	Col-0 rhizosphere combined assembly	Host-Associated
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental
3300017941	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150	Environmental
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental
3300017996	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40	Environmental
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental
3300018002	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40	Environmental
3300018003	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40	Environmental
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental
3300018014	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40	Environmental
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental
3300018023	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100	Environmental
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental
3300025419	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100 (SPAdes)	Environmental
3300025439	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100 (SPAdes)	Environmental
3300025496	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40 (SPAdes)	Environmental
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental
3300027745	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2M	Environmental
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental
3300028560	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_2	Environmental
3300028748	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2	Environmental
3300028806	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1	Environmental
3300029951	III_Palsa_N1 coassembly	Environmental
3300030007	I_Palsa_E1 coassembly	Environmental
3300030741	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly	Environmental
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental
3300031585	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-40	Environmental
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_101539642	3300000567	Peatlands Soil	MSDMSPEVKAVKDFIGSQHMQDVFKRVNAMSTAPLEFIWLEELAP*
Ga0062389_1021477171	3300004092	Bog Forest Soil	MAASEVKAIKDFLGSQHMQDVFMRVNAMSTAPLEFIWLEELA
Ga0055489_100789081	3300004145	Natural And Restored Wetlands	KIGRWRLLRGIGDRNRVHVVAELQESEVKGVKEFMETDRMQDVFRQVNAMSKAPLEFVWLEELTR*
Ga0062388_1016000352	3300004635	Bog Forest Soil	MRGSEDRNRVHVVAEMTASEVKDVKDFIQSKHMQDVFKKVNDMSTAPIEIIWLEEVGK*
Ga0066672_107240212	3300005167	Soil	RVHVVGEVTASEVKAAKDWIESQHMQDVFKGVNAMSAAPLEFIWLEELAP*
Ga0066388_1060383582	3300005332	Tropical Forest Soil	RVHVVAEVAASEVKEVKDFIQSKHMQDVFKQVNAMSTAPLEIVWLEELSP*
Ga0070713_1014556801	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VVGEMAASEVKAVKDWIKSQHMQDVFKRVNAMSTAPLEFIWLEELAP*
Ga0066903_1036419451	3300005764	Tropical Forest Soil	VKEVKDFIQSKHMQDVFKKVNDISTAPIEIIWLEEVGQ*
Ga0066903_1069828041	3300005764	Tropical Forest Soil	WRVMRGSEDRNRVHVVAELAASEVKEVKEFIQSKHMQDVFKKVNDISTTPIEIIWLEEVGQ*
Ga0075289_10893562	3300005888	Rice Paddy Soil	VGEVAASEVQTVKDFLASDRMRDVFRRVDAMSTAPVEFVWLEEQAV*
Ga0070717_101539364	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VKASEAKAVRDWIKSQHMQDVFKRVNAMSTAPLEFIWLEELATLVS*
Ga0075017_1011588103	3300006059	Watersheds	LFGEVAASEVKAVKDWIKSQHMQDVFKRVNAISTAPLEFIWLEELAP*
Ga0075018_105678422	3300006172	Watersheds	KAAKDWIESQHMQDVFKRVNAMSTAPLEFIWLEELAP*
Ga0070716_1010622583	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VTIATEFTVGEMAASEVKAVKDWIKSQHMQDVFKRVNAMSTAPLEFIWLEELAP*
Ga0075014_1003936262	3300006174	Watersheds	RNRVHVVGDVAASEVKAVKDFLGSQHMQDVFKRVNAMSTAPLEFIWLEELAP*
Ga0116128_10481122	3300009518	Peatland	VAASEVKAVKDFIGSQHMQDVFKRVNAMSTAPLEVIWLEELVDRI*
Ga0116222_12585431	3300009521	Peatlands Soil	RNRVHVVGEVAASEVKAVKDFIGSQHMQDVFKRVNAMSTAPLEFIWLEELAP*
Ga0116116_11349071	3300009621	Peatland	VKDFIGSQHMQDVFKRVNAMSTAPLEVIWLEELAP*
Ga0116119_11141711	3300009629	Peatland	DRNRVHVVGEVAASEVKAVKDFIGSQHMQDVFKRVNAMSTAPLEVIWLEELVDRI*
Ga0116119_11241161	3300009629	Peatland	DRNRVHVVGEVAASEVKAVKDFIGSQHMQDVFKRVNAMSTAALEFIWLEELAP*
Ga0116115_10291881	3300009631	Peatland	SDDRNRVHVVGEVAASEVKAVKDFIGSQHMQDVFKRVNAMSTAALEFIWLEELAP*
Ga0105854_11894681	3300009660	Permafrost Soil	SEVKAVKDFLGSQHMQDVFKRVNAMSTAPLEFIWLEELAP*
Ga0105858_12556051	3300009661	Permafrost Soil	GDVAASEVKTVKDFLGSQHMQDVFKRVNAMSTAPLEFIWLEELAP*
Ga0116217_105522742	3300009700	Peatlands Soil	KLFKADPPPKIGRWRLLRGSDDRNRVHVVGEVAASEVKAVKDFIGSQHMQDVFKRVNAMSTAPLEVIWLEELVDRI*
Ga0116217_108326051	3300009700	Peatlands Soil	GRWRLARGIDDRNRVHVVGEVSAAEVKDVKDFLNSPRMQDVFRRVNAMSTVPIEFVWLEEVKP*
Ga0116130_11591161	3300009762	Peatland	SDDRNRVHVVGEVAASEVKAVKDFIGSQHMQDVFKRVNAMSTAPLEFIWLEELAP*
Ga0116223_103201482	3300009839	Peatlands Soil	VVGEVAASEVKAVKDFIGSQHMQDVFKRVNAMSTVPLEFIWLEELAP*
Ga0134063_102479021	3300010335	Grasslands Soil	VKAAKDWIDSQDMQDVFKRVNAMSTAPLEFIWLEELAP*
Ga0136449_1031979271	3300010379	Peatlands Soil	PKIGRWRLLRGSEDRNRVHVVGEVAASEVKAVKDFIGSQHMQDVFRRVNAMSTAPLEFIWLEELAP*
Ga0120156_10271681	3300011996	Permafrost	RNRVHVVGEMTASEVKGVKEFIDSAHMKDVFRNVNAMSTAPVEIVWLEELAA*
Ga0137363_115552342	3300012202	Vadose Zone Soil	PKIGRWRLLRGSDDRNRVHVVGEVVTSEVKAVKDWIKSQHMKDVFKRVNAMSTAPLEFIWLEELAP*
Ga0153928_11090121	3300012677	Attine Ant Fungus Gardens	PPKIGRWRLLRGSDDRARVHVVGEMAASEVKAVKDWIKSQHMQDVFKRVNAMSTAPLEFIWLEELAP*
Ga0164302_110014101	3300012961	Soil	PPQVGRWRLTRGIDDRNRVHVVAEVQPSEVKDVKDFIASERMKDVFRRVNAMSTAPLELIWLEEVTP*
Ga0181538_107424782	3300014162	Bog	VKDFIASPHMQEVFKRVNAMSIAPQEFIWLEELTP*
Ga0181531_100233972	3300014169	Bog	MSEVKAVKDFIASQHMQDAFKRVNAMSTAPMDFVWLEELAP*
Ga0181535_104642192	3300014199	Bog	KAVKDFLGSQHMQDVFKRVNAMSTAPQEIIWLEELTP*
Ga0181537_111487231	3300014201	Bog	RWRVLRGADDRNRVHVVGEVAASEVQAVKDFIASPHMQEAFKRVNAMSTAPQEFIWLEELTP*
Ga0163163_107885042	3300014325	Switchgrass Rhizosphere	GEMAASEVKAVKDWIKSQHMQDVFKRVNAMSTAPLEFIWLEELAP*
Ga0157380_131889201	3300014326	Switchgrass Rhizosphere	PPQIGRWRLLRGTDDRNRVHVVAELQESDVKGVKEFMQSERMQNVFRQVNAMSTAPMEFVWLEELKP*
Ga0182015_100481081	3300014495	Palsa	PPPKVGRWRLLRGSDDRNRVHVVGEVAASEVKGVKEFLGSQHMQDVFKRVNAMSTAPQEIIWLEELAP*
Ga0182015_101457631	3300014495	Palsa	PPPKVGRWRLLRGSDDRNRVHVVGEVAASEVKAVKDFLGSQHMQDVFKRVNAMSTAPQEIIWLEELAP*
Ga0182015_110485891	3300014495	Palsa	VKDFLGSPHMQDVFKRVNAMSTVSQEIVWLEELAP*
Ga0182024_104070595	3300014501	Permafrost	DRNRVHVVGDVAASEVTAVKDFLGSQHMQDVFKRVNAMSTAPLEFVWLEELAP*
Ga0181536_102894702	3300014638	Bog	PPPKIGRWRLLRGSDDRNRVHVVGEVAASEVKAVKDFIGSQQMQDAFKRVNAMSTAPLEFIWLEELAP*
Ga0181525_100018561	3300014654	Bog	VKAVKDFLGSQHMQDVFKRVNAMSTAPQEIIWLEELTP*
Ga0132255_1011023581	3300015374	Arabidopsis Rhizosphere	RNRVHVVAELQESEMKGVKDFIQSERMQNVFRQVNAMSTAPIEFVWLEELKP*
Ga0132255_1030660962	3300015374	Arabidopsis Rhizosphere	AASEVKVVKDFLGSQHMQDVFKRVNAMSTAPLEFIWLDELAT*
Ga0187856_10748513	3300017925	Peatland	VGEVAASEVKAVKDFIGSQHMQDVFKRVNAMSTAALEFIWLEELAP
Ga0187849_10401241	3300017929	Peatland	EVKAVKDFIGSQHMQDVFKRVNAMSTAPLEFIWLEELAP
Ga0187850_100254271	3300017941	Peatland	GRWRLLRGSDDRNRVHVVGEVAASEVKAVKDFIGSQHMQDVFKRVNAMSTAPLEVIWLEELVDRI
Ga0187850_101237351	3300017941	Peatland	AASEVKAVKDFIGSQHMQDVFKRVNAMSTAALEFIWLEELAP
Ga0187847_107768181	3300017948	Peatland	LLRGSDDRNRVHVVGEVAASEVKAVKDFLGSQHMQDVFKRVNAMSTAPQEIIWLEELAP
Ga0187817_105900671	3300017955	Freshwater Sediment	PPKIGRWRLLRGSDDRNRVHVVGEVAASEVKAVKDFIGSQHMQDVFKRVNAMSTAPLEFIWLEELAP
Ga0187780_108320652	3300017973	Tropical Peatland	DDRNRVHVVGEVTASEVKAAKGFIGSQHMQNVFKRFSAMSTAPMEFVWLEELRSP
Ga0187777_110878551	3300017974	Tropical Peatland	DILHMWRRDEVNAIKDFIASPHMQDVFKRVNAMSTAPLEIIWLEELSP
Ga0187891_11349152	3300017996	Peatland	KAVKDFIGSQHMQDVFKRVNVMSTAPLEFIWLEELAP
Ga0187815_100725693	3300018001	Freshwater Sediment	GTDDRNRVHVVGEMAASEVKAVKDFIASPHMQEVFKRVNAMSTAPQEFIWLEELTP
Ga0187868_10082198	3300018002	Peatland	VVGEVAASEVKAVKDFIGSQHMQDVFKRVNAMSTAPLEVIWLEELVDRI
Ga0187868_11569413	3300018002	Peatland	DRNRVHVVGEVAASEVKAVKDFIGSQHMQDVFKRVNAMSTAALEFIWLEELAP
Ga0187876_10171725	3300018003	Peatland	WRLLRGSDDRNRVHVVGEVAASEVKAVKDFIGSQHMQDVFKRVNAMSTAPLEVIWLEELVDRI
Ga0187888_10309141	3300018008	Peatland	LRGTDDRNRVHVVGEMAASEVKVVKDFIASPHMQEVFKRVNAMSTAPQEIIWLEELTP
Ga0187888_11032702	3300018008	Peatland	NPPPPVGRWRLARGTDDRNRVHVVGEVSAAEVKDVKDFVNSPRMQDVFRRVNAMSTAPLEFVWLDEVKP
Ga0187860_11311682	3300018014	Peatland	DRNRVHVVGEVAASEVKAVKDFIGSQHMQDVFKRVNAMSTAALEFIWLEELAL
Ga0187872_100610913	3300018017	Peatland	AASEVKAVKDFIGSQHMQDVFKRVNAMSTAPLEVIWLEELVDRI
Ga0187872_103700662	3300018017	Peatland	AASEVKAVKDFIGSQHMQDVFKRVNAMSTAPLEVIWLEELAP
Ga0187889_101191541	3300018023	Peatland	RNRVHVVGEVAASEVKAVKDFIGSQHMQDVFKRVNAMSTAALEFIWLEELAP
Ga0187869_100234645	3300018030	Peatland	DPPPKIGRWRLLRGSDDRNRVHVVGEVAASEVKAVKDFIGSQHMQDVFKRVNAMSTAPLEVIWLEELVDRI
Ga0187869_101216641	3300018030	Peatland	RLLRGSDDRNRVHVVGEVAASEVKAVKDFIGSQHMQDVFKRVNAMSTAALEFIWLEELAP
Ga0187862_100603961	3300018040	Peatland	VKDFIASPHMQEVFKRVNAMSTAPQEFIWLEELTP
Ga0187862_101857841	3300018040	Peatland	SDDRNRVHVVGEVAASEVKAVKDFIGSQHMQDVFKRVNAMSTAALEFIWLEELAP
Ga0187890_106613501	3300018044	Peatland	MSEVKAVKDFIASQHMQDAFKRVNAMSTAPMEFIWLEELAP
Ga0187890_107696461	3300018044	Peatland	TDDRNRAHVVGEMATSEVKAVKDFIASPHMQEVFKRVNAMSIAPQEFIWLEELTP
Ga0187858_103548991	3300018057	Peatland	VHVVGEVAASEVKAVKDFIGSQHMQDVFKRVNAMSTAALEFIWLEELAP
Ga0187858_104023381	3300018057	Peatland	SDDRNRVHVVGEVAASEVKAVKDFIGSQHMQDVFKRVNAMSTAPLEFIWLEELAP
Ga0210403_111056202	3300020580	Soil	VVGEVKASEAKAVRDWIKSQHMQDVFKRVNAMSTAPLEFIWLEELAP
Ga0210387_105221614	3300021405	Soil	VKAVKDWIKSQHMQDVFKRVNAMSTAPLEFIWLEELAP
Ga0210402_103463421	3300021478	Soil	MAASEVKAVKDWIKSQHMQDVFKRVNAMSTAPLEFIWLEELAS
Ga0208036_10529612	3300025419	Peatland	RGSDDRNRVHVVGEVAASEVKAVKDFIGSQHMQDVFKRVNAMSTAALEFIWLEELAP
Ga0208323_10629501	3300025439	Peatland	AADDPPPPVGRWRLARGIDDRNRVHVVGEVSAAEVKDVKDFLNSPRMQDVFRRVNAMSTVPIEFVWLDEVKP
Ga0208191_10024211	3300025496	Peatland	DDRNRVHVVGEVAASEVKAVKDFIGSQHMQDVFKRVNAMSTAPLEFIWLEELAP
Ga0208191_10256312	3300025496	Peatland	RGTDDRNRVHVVGEVSAAEVKDVKDFVNSPRMQDVFRRVNAMSTAPLEFVWLDEVKP
Ga0207700_110492421	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	GSDDRDRVHVVGEMAGSEVKAVKDWIKSQHMQDVFKRVNAMSTAPLEFIWLEELAP
Ga0209908_100369592	3300027745	Thawing Permafrost	RWRLLRGSDDRNRVHVVGEVAASEVKAVKDFLGSQHMQDVFKGVNAMSTAPQEIIWLEELAP
Ga0209773_103699273	3300027829	Bog Forest Soil	MAASEVKAIKDFLGSQHMQDVFMRVNAMSTAPLEFIWLE
Ga0209006_1000267515	3300027908	Forest Soil	MTPSEVKAVKDFLGSQHMQDVFKRVNAMSTAPLEFIWLEELAP
Ga0302144_103047902	3300028560	Bog	VKDFLASQHMQDVFKTVNAMSTAPLEVVWLDEMAP
Ga0302156_102433721	3300028748	Bog	GTEDRNRAHVVGEIAASEVKAVKDFLASQHMQDVFKTVNAMSTAPLEVVWLDEMAP
Ga0302221_102118721	3300028806	Palsa	LRGVDDRNRVHVVGEVAASEVQAVKDFIASPHMQEVFKRVNAMSTAPQEFIWLEELTP
Ga0311371_125879682	3300029951	Palsa	DPPPKVGRWRLLRGSDDRNRVHVVGEVAASEVQAVKDFIASPHMQEAFKRVNAMSTAPQEFIWLEELTP
Ga0311338_113733571	3300030007	Palsa	ASEVQAVKDFIASPHMQEVFKRVNAMSTAPQEFIWLEELTP
Ga0265459_128975822	3300030741	Soil	EVAASEVKTVKDFIASPHMQEAFKRVNAMSTAPQEFIWLEELTP
Ga0075386_100461911	3300030916	Soil	EVKAAKDWIESQHMQDVFKRVNAMSTAPLEFIWLEELAP
Ga0170824_1024557241	3300031231	Forest Soil	TASEVKAAKDWIESQHMQDVFKRVNAMSTAPLEFIWLEELAS
Ga0170824_1123494991	3300031231	Forest Soil	VKAAKDWIESQHMQDVFKRVNAMSTAPLEFIWLEELAP
Ga0170820_147781722	3300031446	Forest Soil	AKDWIESQHMQDVFKRVNAMSTAPLEFIWLEELAS
Ga0170819_128971811	3300031469	Forest Soil	AAKDWIESQHMQDVFKRVNAMSTAPLEFIWLEELAP
Ga0302326_100394458	3300031525	Palsa	NRVHVVGEVAASEVKAVKDFLGSQHMQDVFKGVNAMSTAPQEIIWLEELAP
Ga0315534_13201091	3300031585	Salt Marsh Sediment	RGVDDPNRVHVVGEVEPSDVKEVKAFLASDRMQEAFRRVNAMSTAPVEFVLLEEVEP
Ga0307474_105741251	3300031718	Hardwood Forest Soil	GRWRLLRGSDDRDRVHVVGEVAASEVKAVKDWIKSQHMQDVFKRVNAMSTAPLEFIWLEELAP
Ga0307477_100099761	3300031753	Hardwood Forest Soil	SDDRDRVHVVGEVAASEVKAVKDWIKSQHMQDVFKRVNAMSTAPLEFIWLEELAP
Ga0307479_100499418	3300031962	Hardwood Forest Soil	AKDWIKSQHMQDVFKRVNAMSTAPLEFIWLEELAP
Ga0306922_116941591	3300032001	Soil	GSEDRNRVHVVAELTASEVKEVKDFIQSKHMQDVFKKVNDISTAPIEIIWLEEVGQ
Ga0311301_111352323	3300032160	Peatlands Soil	SEVKAVKDFIGSQHMQDVFKRVNAMSTAPLEFIWLEELAP
Ga0311301_112346271	3300032160	Peatlands Soil	WRLARGTDDRNRVHVVGEVSAAEVKDVKDFLNSPRMQDVFRRVNAMSTVPLEFVWLDEVK
Ga0307471_1019251402	3300032180	Hardwood Forest Soil	DDRDRVHVVGEVAASEVKAVKDWIKSQHMQDVFKRVNAMSTAPLEFIWLEELAP
Ga0307472_1006886931	3300032205	Hardwood Forest Soil	EVKAVKDWIKSQHMQDVFKRVNAMSTAPLEFIWLEELAP
Ga0306920_1015036301	3300032261	Soil	GVKDFIESEHMKDVFRRVNAMSTAPLEFIWLEEVAP
Ga0335081_126939741	3300032892	Soil	QFKANPPPKVGRWRMFRGADDRNRAHVVGEVAASDVKAVKDFLDSPHMQMVFKAVNAMSTAPVEIVWLDEQPH