Basic Information | |
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Family ID | F090818 |
Family Type | Metagenome |
Number of Sequences | 108 |
Average Sequence Length | 49 residues |
Representative Sequence | LTPGIIFGRFKIGMDSPTRPINLIFGAGYQIAVTPNPVTQNNWVATARITF |
Number of Associated Samples | 90 |
Number of Associated Scaffolds | 108 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 8.33 % |
% of genes near scaffold ends (potentially truncated) | 91.67 % |
% of genes from short scaffolds (< 2000 bps) | 92.59 % |
Associated GOLD sequencing projects | 85 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.53 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (57.407 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (15.741 % of family members) |
Environment Ontology (ENVO) | Unclassified (27.778 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (65.741 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 50.63% Coil/Unstructured: 49.37% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.53 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Peatland Bog Forest Soil Bog Peatland Freshwater Sediment Watersheds Soil Terrestrial Soil Tropical Forest Soil Peatlands Soil Soil Soil Soil Untreated Peat Soil Tropical Peatland Bog Forest Soil Tropical Forest Soil Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Agricultural Soil Palsa Peat Soil Termite Gut Arabidopsis Rhizosphere Switchgrass Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Attine Ant Fungus Gardens |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0070676_113305821 | 3300005328 | Miscanthus Rhizosphere | GRFKIGQDSPERPVNLIVGAGYQFAVTTDPVVKNNWVATLRVTF* |
Ga0066388_1070339081 | 3300005332 | Tropical Forest Soil | LGRFKLANDTPTRPVNLIIGAGYQVAVTPNPVTQNNFVGTIRVTF* |
Ga0070701_107325181 | 3300005438 | Corn, Switchgrass And Miscanthus Rhizosphere | LTPGIIFGRFKIGQDSPERPVNLIVGAGYQFAVTTDPVVKNNWVATLRVTF* |
Ga0070693_1008575141 | 3300005547 | Corn, Switchgrass And Miscanthus Rhizosphere | QVLLTPGIIFGRFKIGQDSPERPVNLIVGAGYQFAVTTDPVVKNNWVATLRVTF* |
Ga0066903_1011198441 | 3300005764 | Tropical Forest Soil | EGLSQVLLTPGIIFGRFKIGMDTPTRPINLIFGAGYQFSVTSNPVTANNWVATARITF* |
Ga0066903_1085699912 | 3300005764 | Tropical Forest Soil | RFKIGQDSPERPVNLIVGAGYQFAVTSDPVVKNNWVATIRVTF* |
Ga0068858_1006955962 | 3300005842 | Switchgrass Rhizosphere | FGRFKIGQDTPERAVNLIVGAGYQFAVTTDPVVKNNWVATIRVTF* |
Ga0075024_1007789412 | 3300006047 | Watersheds | IIFGRFKIGQDSPTRPVNLIIGAGYQFAVTGDPVVKNNWVATMRITF* |
Ga0075018_106894072 | 3300006172 | Watersheds | LILGRFQIANDTPTRPVNLIIGAGYQVAVTPNPVTQNNFVGTIRVTF* |
Ga0070765_1011647472 | 3300006176 | Soil | DSPTRPINLIVGAGYQVAVTPNPVVQNNFVGTIRITF* |
Ga0105248_102158413 | 3300009177 | Switchgrass Rhizosphere | FGRFKIGQDSPERPVNLIVGAGYQFAVTTDPVVKNNWVATLRVTF* |
Ga0116214_13833781 | 3300009520 | Peatlands Soil | TPGIIFGRFKIGMDSPTRPINLIVGAGYQFAVTPNPVIQNNFVGTVRVTF* |
Ga0116222_10137581 | 3300009521 | Peatlands Soil | SPTRPINLIVGAGYQFAVTPNPVIQNNFVGTVRVTF* |
Ga0116218_11725572 | 3300009522 | Peatlands Soil | YPNGEHQGLSQVLLTPGIIFGRFKIGQDSPTRPVNLIFGVGYQVAVTPNPVVQNNVVATLRVTF* |
Ga0116221_13730253 | 3300009523 | Peatlands Soil | TRPINLIFGAGYQIAVTPNPVTSNNWVATARITF* |
Ga0116118_11952092 | 3300009637 | Peatland | LSQVLLTPGIIFGRFKIGMDSPTRPINLIIGAGYQFAVTPNPITQNNVVATVRVTF* |
Ga0116132_10546011 | 3300009646 | Peatland | IGMDSPTRPVNLIFGVGYQFAVTPTPVVQNNVVATVRVTF* |
Ga0116215_13003371 | 3300009672 | Peatlands Soil | PTRPINLIFGAGYQVAVTPNPVTQNNVVATMRITF* |
Ga0116215_13829041 | 3300009672 | Peatlands Soil | RFRLGMDTPTRPINLIVGAGYQVAVTPNPVTQNNVVATVRVTF* |
Ga0116216_103422081 | 3300009698 | Peatlands Soil | SPTRPINLIFGAGYQIAVTPNPVVNNNWVATARITF* |
Ga0116216_107732871 | 3300009698 | Peatlands Soil | TPGIIFGRFPIGMDSPTRPIHLIFGAGYQIAVTGDPVVKNNWVATLRITF* |
Ga0116219_106388851 | 3300009824 | Peatlands Soil | IFGRFKIGMDSPTRPINLIFGAGYQVAVTPNPVTQNNVVATMRITF* |
Ga0123355_110394283 | 3300009826 | Termite Gut | FKIGQSTPNRPINLIFGAGYQVAVTSNPVTKNNFVATVRVTF* |
Ga0126384_124765031 | 3300010046 | Tropical Forest Soil | MLTPGVIFGRFQIGNVTATRPANLIFGAGYQIAVTPNPVVHDNVV |
Ga0126373_106361631 | 3300010048 | Tropical Forest Soil | QVLLTPGIIFGRFKIGMDTPTRPINLIFGAGYQFSVTSNPVTANNWVATARITF* |
Ga0126373_125866971 | 3300010048 | Tropical Forest Soil | VLLTPGIIFGRFKIGMDTPTRPINLIFGAGYQFSVTSNPVTANNWVATTRITF* |
Ga0123356_113999091 | 3300010049 | Termite Gut | GRFKIGQSTPNRPINLIFGAGYQVAVTSNPVTKNNFVATVRVTF* |
Ga0074045_104270682 | 3300010341 | Bog Forest Soil | LLTPGIIFGRFKIGQDTPTRQINLIFGAGYQVAVTSNPVIKNNFVATVRI |
Ga0126378_108006433 | 3300010361 | Tropical Forest Soil | TPGIIFGRFKIGMDTPTRPMNLIFGAGYQFSVTSNPVIANNWIATARITF* |
Ga0126379_128687792 | 3300010366 | Tropical Forest Soil | FKIGMDTPTRPINLIFGAGYQFSVTSNPVTANNWVATARITF* |
Ga0134128_128062302 | 3300010373 | Terrestrial Soil | PGIIFGRFKIGQDSPTRPMNLIFGVGYQVAVTPNPVIQNNLVASVRITF* |
Ga0126381_1009677534 | 3300010376 | Tropical Forest Soil | QVLLTPGIIFGRFKIGMVTPTRPMNLIFGAGYQFSVTSNPVIANNWVATTRITF* |
Ga0126381_1041143141 | 3300010376 | Tropical Forest Soil | RFKIGMDTPTRPINLIFGAGYQFSVTSNPVNDNNWIATTRITF* |
Ga0136449_1036957011 | 3300010379 | Peatlands Soil | YPNGEHQGLSQVLLTPGIIFGRFKIGQDSPTRPVNLIFGVGYQVAVTPNPVVQNNVVATVRITF* |
Ga0126383_107405442 | 3300010398 | Tropical Forest Soil | MLTPGLILGRFKLANDTPTRPVNLIIGAGYQVAVTPNPVTQNNFVGTIRVTF* |
Ga0126383_110315733 | 3300010398 | Tropical Forest Soil | FKIGMDTPTRPINLIFGAGYQFSVTSNPVIANNWVATTRITF* |
Ga0126383_116972641 | 3300010398 | Tropical Forest Soil | IGMDTPTRPINLIFGAGYQFSVASNPVTANNWVATTRITF* |
Ga0134127_103604881 | 3300010399 | Terrestrial Soil | GIHTGLSQVLLTPGIIFGRFKIGQDSPERPVNLIVGAGYQFAVTTDPVVKNNWVATLRVTF* |
Ga0134122_107391312 | 3300010400 | Terrestrial Soil | GLDTPTRPVNLIVGAGYQIAVTSDPVVKNNWVATIRVTF* |
Ga0153944_11059431 | 3300012088 | Attine Ant Fungus Gardens | TPGIIFGRFKIGMDSPTRPVNLIVGAGYQFAVTDNPVVKNNVVVTVRVTF* |
Ga0164299_103579362 | 3300012958 | Soil | KLPNHTPTRPVNRIIGAGYQVAVTPNPVTQNNFVGTIRVTF* |
Ga0164305_108324862 | 3300012989 | Soil | PGVIFGRFQIGNVTATRPANLVFGAGYQIAVTPNPVTHDNVVATLRITF* |
Ga0157378_106746481 | 3300013297 | Miscanthus Rhizosphere | NGIHTGLNQVLLTPGIIFGRFKIGQDNSERPVNLIVGAGYQFAVTTDPVVKNNWVATIRVTF* |
Ga0157375_113617402 | 3300013308 | Miscanthus Rhizosphere | PNGIHTGLNQVLLTPRIIFGRFKIGQDSPERPVNLIVGAGYQFAVTTDPVVKNNWVATIRVTF* |
Ga0181532_100310645 | 3300014164 | Bog | LLTPGIIFGRFKIGMDSPTRPINLIIGAGYQFAVTPTPVVQNNVVATVRITF* |
Ga0132258_123582861 | 3300015371 | Arabidopsis Rhizosphere | GLNQVLLTPGIIFGRFKIGQDTPTRAVNLIVGAGYQIAVTSDPVVKNNWVATIRVTF* |
Ga0182036_116541892 | 3300016270 | Soil | PTRPINLIFGAGYQFAVTGDPVVKNNWVATMRITF |
Ga0182041_114572571 | 3300016294 | Soil | VLLRPGIIFGRFKIGMDTPTRPINLIFGAGYQFSVTSNPVIANNWIATTRITF |
Ga0182041_114715162 | 3300016294 | Soil | CENRRANDTPTRPVNLIIGAGYQVAVTPNPVTQNNFVGTIRVTF |
Ga0182040_102366721 | 3300016387 | Soil | ANDTPTRPVNLIIGAGYQVAVTPNPVTQNNFVGTIRVTF |
Ga0182039_115520581 | 3300016422 | Soil | LTPGLILGRFQIGNDTPTRPINLIIGAGYQVAVTANPVTQNNFVGSVRITF |
Ga0187812_11167431 | 3300017821 | Freshwater Sediment | MDSPTRPINLIFGAGYQIAVTPNPVISNNWVATVRITF |
Ga0187849_11592141 | 3300017929 | Peatland | FKIGMDSPTRPINLIFGAGYQIAVTPNPVTSNNWVATARITF |
Ga0187879_102789141 | 3300017946 | Peatland | NGEHQGLSQVLLTPGIIFGRFKIGMDSPTRPINLIFGAGYQIAVTPNPVTQNNWVATARITF |
Ga0187879_104541372 | 3300017946 | Peatland | HVGLSQVLLTPGIIFGRFKIGMDSPTRPINLIFGAGYQVAVTPNPVTQNNVVATMRITF |
Ga0187847_107271701 | 3300017948 | Peatland | QLLITPGLILGRFKIGMDSPTRPINLIVGAGYQIAVTPNPVVQNNIVATVRVTF |
Ga0187783_102036353 | 3300017970 | Tropical Peatland | HVGLTQVLLTPGLILGRFPIGYDTATRPINLIIGAGYQIAVTPNPVTQNNFVGTFRITF |
Ga0187783_102968153 | 3300017970 | Tropical Peatland | ILGRFPIGYDTATRPINLIIGAGYQIAVTPNPVTQNNFVGTFRITF |
Ga0187783_105219402 | 3300017970 | Tropical Peatland | LLTPGIIFGRFKIGQSGLTRPINLIFGAGYQAAVTSNPVVKNNFVATLRITF |
Ga0187777_106810961 | 3300017974 | Tropical Peatland | GLILGRFQIGNDTATRPINLIIGAGYQIAVTANPVTQNNFVGTLRITF |
Ga0187823_100963831 | 3300017993 | Freshwater Sediment | QAMPTPGLILGRFQIAKDTPTRPVNLIIGAGYQVAVTPNPVTQNNFVGTVRVTF |
Ga0187860_11834001 | 3300018014 | Peatland | WPNGEHVGLSQVLLTPGIIFGRFKIGMDSPTRPINLIFGAGYQVAVTPNPVTQNNVVATMRITF |
Ga0187861_104197721 | 3300018020 | Peatland | IIFGRFKIGMDSPTRPINLIFGAGYQIAVTPNPVTSNNWVATARITF |
Ga0187862_102601333 | 3300018040 | Peatland | EHQGLSQVLLTPGIIFGRFKIGMDSPTRPINLIFGAGYQIAVTPNPVVNNNWVATARITF |
Ga0187862_106605213 | 3300018040 | Peatland | LTPGIIFGRFKIGMDSPTRPINLIFGAGYQIAVTPNPVTQNNWVATARITF |
Ga0187766_102965782 | 3300018058 | Tropical Peatland | TPGIIFGRFKIGQDTPTRPINLIFGAGYQFAVTDNPVIANNWVATVRITF |
Ga0187784_114724031 | 3300018062 | Tropical Peatland | LPRDFSPTGPVDLIIGAGYQFAVMSTPVVLNNFVGTIRVRF |
Ga0187771_100724611 | 3300018088 | Tropical Peatland | LPRHFSPTRPVDLIIGAGYQFAVMATPVVENNFVGTIRMTF |
Ga0173482_104552841 | 3300019361 | Soil | DTPTRPVNLIVGAGYQIAVTSDPVVKNNWVATIRVTF |
Ga0210407_110069842 | 3300020579 | Soil | IIFGRFKIGQDSPTRPINLIIGAGYQFAVTSDPVVKNNWVATVRVTF |
Ga0210407_111577271 | 3300020579 | Soil | ATRPANLVFGAGYQIAVTPNPVTHDNVVATLRITF |
Ga0210401_111567941 | 3300020583 | Soil | IFGRFQIGNVTATRPAHLIFGAGYQVAVTPNPVTHDNVVATFRITF |
Ga0210404_102720172 | 3300021088 | Soil | TPGIIFGRFKIGQDSPTRPINLIIGAGYQFAVTSDPVVKNNWVATLRVTF |
Ga0210408_109331262 | 3300021178 | Soil | QVLLTPGIIFGRFKIGQDSPTRPVNLIIGAGYQFAVTSDPVVKNNWVATLRITF |
Ga0210385_107585152 | 3300021402 | Soil | VLLTPGIIFGRFKIGMDSPTRPINLIFGAGYQFAVTSNPVTANNWVATMRITF |
Ga0210387_103170443 | 3300021405 | Soil | SQVLLTPGIIFGRFKIGQDSPTRPINLIIGAGYQFAVTSDPVVKNNWVATLRVTF |
Ga0210383_103393451 | 3300021407 | Soil | HQGLSQVLLTPGLILGRFQIGNDTPTRPINLIIGAGYQVAVTPNPVTSNNFVGTMRITF |
Ga0210390_101441663 | 3300021474 | Soil | VLLTPGIIFGRFKIGQDSPTRPINLIIGAGYQFAVTSDPVVKNNWVATLRVTF |
Ga0210390_107775782 | 3300021474 | Soil | PGVIFGRFQIGNVTATRPANLVFGAGYQIAVTPNPVTHDNVVATLRITF |
Ga0210402_111634732 | 3300021478 | Soil | LLTPGLILGRFQIGNDTPTRPINLIIGAGYQMAVTPNPVTQNNFVGTVRVTF |
Ga0210410_109453861 | 3300021479 | Soil | LGRFRIGMDSPTRPINLIVGAGYQVAVTPNPVVQNNFVGTIRITF |
Ga0210410_111142632 | 3300021479 | Soil | LLTPGIILGRFKIGRDTATRPINLIIGAGYQVAVTSNPVTKNNFVATMRITF |
Ga0207650_117483972 | 3300025925 | Switchgrass Rhizosphere | VLLTPGIIFGRFKIGQDSPERPVNLIVGAGYQFAVTTDPVVKNNWVATIRVTF |
Ga0207664_110082871 | 3300025929 | Agricultural Soil | GVLLTPGLILGRFKLANDTPTRPVNLIIGAGYQVAVTPNPVTQNNFVGTIRVTF |
Ga0208043_11622221 | 3300027570 | Peatlands Soil | PNGIHQGLSQVLLTPGIIFGRFKIGMDSPTRPINLIVGAGYQFAVTPNPVIQNNFVGTVRVTF |
Ga0209525_10463931 | 3300027575 | Forest Soil | FKMGQDTATRPINLIIGAGYQMAVTANPITKNNFVATMRVTF |
Ga0209139_100285922 | 3300027795 | Bog Forest Soil | FGRFKIGQDTPTRPINLIFGAGYQVAVTSNPVIKNNFVATVRITF |
Ga0209006_101141543 | 3300027908 | Forest Soil | ILGRFKIGQDTATRPINLIIGAGYQMAVTANPVTKNNFVATMRVTF |
Ga0302219_101631521 | 3300028747 | Palsa | PNGEHVGLSQVLLTPGIIFGRFKIGMDSPTRPMNLIFGVGYQVAVTPNPVTQNNVVATMRITF |
Ga0302183_102367261 | 3300030509 | Palsa | QGLSQVLLTPGIIFGRFKIGQDTPTRPINLIFGVGYQVAVTPNPVVQNNFVATVRVTF |
Ga0311354_108321643 | 3300030618 | Palsa | QVLLTPGIIFGRFKIGQGTPTRPINLIFGVGYQVAVTPNPVVQNNFVGTVRITF |
Ga0310915_105170831 | 3300031573 | Soil | CWLEPSHVTPGLILGRFKLANDTPTRPVNLIIGAGYQVAVTPNPVTQNNFVGTIRVTF |
Ga0310686_1022549622 | 3300031708 | Soil | GLNQVLLTPGIIFGRFKIGQDTATRPINLIFGAGYQMAVTANPVVKNNFVATMRITF |
Ga0310686_1114272326 | 3300031708 | Soil | LNQVLLTPGVILGRFRIGMDSPTRPINLIVGAGYQVAVTPNPVVQNNFVGTIRITF |
Ga0306917_113749571 | 3300031719 | Soil | LLTPGLILGRFQIGNDTPTRPINLIIGAGYQMAVTQNPVTQNNFVGTVRVTF |
Ga0318521_110419781 | 3300031770 | Soil | YEYWPNGQHQHLSQVLLTPGIIFGRFKIGMDTPTRPINLIFGAGYQFSVTSNPVTANNWVATTRITF |
Ga0318547_105427071 | 3300031781 | Soil | WDTTPGRRLCENRRANDATRPVNLIIGAGYQVAVTPNPVTQNNFVGTIRVTF |
Ga0306925_107015922 | 3300031890 | Soil | NRRSNDTPTRPVNLIIGAGYQVAVTPNPVTQNNFVGTIRVTF |
Ga0306923_108978712 | 3300031910 | Soil | LLLRPGIIFGRFKIGMDTPTRPINLIFGAGYQFSVTSNPVIANNWIATTRITF |
Ga0310916_112889972 | 3300031942 | Soil | IHQDVSQVLLTPGIIFGRFKIGQDSPTRPVNLIFGAGYQFAVTGDPVVKNNWVASMRITF |
Ga0306924_109670651 | 3300032076 | Soil | RFQIGNDSPTRPINLIVGAGYQIAVTPNPVTQNNFVGTIRVTF |
Ga0306924_118819611 | 3300032076 | Soil | TPGIIFGRFKIGMDTPTRPINLIFGAGYQFSVTSNPVIANNWIATTRITF |
Ga0311301_106797311 | 3300032160 | Peatlands Soil | GRFKIGMDSPTRPINLIFGAGYQIAVTPNPVTSNNWVATARITF |
Ga0311301_118972182 | 3300032160 | Peatlands Soil | LAPRQNLIFGVGYQMAATPNPVIQNNVVVTARLTF |
Ga0335074_102113073 | 3300032895 | Soil | LSQLLLTPGLILGRFKIGQDTATRPINLIIGAGYQMAVTANPVTKNNFVATARITF |
Ga0335073_117085461 | 3300033134 | Soil | VLLTPGLILGRFQIGNDTPTRPINLIIGAGYQMAVTANPVTQNNFVGTLRVTF |
Ga0371490_11132301 | 3300033561 | Peat Soil | LILGRFKIGMDSPTRPINLIVGAGYQIAVTPNPVVQNNIVATVRVTF |
Ga0370515_0370933_452_604 | 3300034163 | Untreated Peat Soil | TPGIIFGRFKIGMDSPTRPINLIVGAGYQIAVTPNPVVQNNVVATMRITF |
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