Metagenome Family F090818

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090818
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	49 residues
Representative Sequence	LTPGIIFGRFKIGMDSPTRPINLIFGAGYQIAVTPNPVTQNNWVATARITF
Number of Associated Samples	90
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	8.33 %
% of genes near scaffold ends (potentially truncated)	91.67 %
% of genes from short scaffolds (< 2000 bps)	92.59 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (57.407 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (15.741 % of family members)
Environment Ontology (ENVO)	Unclassified (27.778 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (65.741 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 50.63% Coil/Unstructured: 49.37%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF03459	TOBE	17.59
PF13505	OMP_b-brl	12.96
PF02321	OEP	3.70
PF00126	HTH_1	3.70
PF07729	FCD	1.85
PF03797	Autotransporter	1.85
PF00497	SBP_bac_3	0.93
PF07690	MFS_1	0.93
PF08240	ADH_N	0.93
PF08937	DUF1863	0.93
PF00230	MIP	0.93
PF03404	Mo-co_dimer	0.93
PF03050	DDE_Tnp_IS66	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	7.41
COG1802	DNA-binding transcriptional regulator, GntR family	Transcription [K]	1.85
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	1.85
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	0.93
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.41 %
Unclassified	root	N/A	42.59 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.41 %
Unclassified	root	N/A	42.59 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	57.41 %
Unclassified	root	N/A	42.59 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	50.93 %
Unclassified	root	N/A	42.59 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.59 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	37.96 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.59 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	35.19 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.59 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	12.96 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	4.63 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	3.70 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.85 %
Roseiarcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae	0.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.59 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	4.63 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.70 %
Methylocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa	2.78 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1.85 %
Methylovirgula	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula	0.93 %
Tardiphaga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga	0.93 %
Roseiarcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus	0.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.59 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	4.63 %
unclassified Methylocapsa	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → unclassified Methylocapsa	2.78 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1.85 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.93 %
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	0.93 %
unclassified Tardiphaga	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga → unclassified Tardiphaga	0.93 %
Bradyrhizobium sediminis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium sediminis	0.93 %
Methylovirgula	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula	0.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.59 %
Pseudolabrys sp. FHR47	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. FHR47	4.63 %
Methylocapsa sp. S129	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → unclassified Methylocapsa → Methylocapsa sp. S129	2.78 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1.85 %
Tardiphaga sp. OK245	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga → unclassified Tardiphaga → Tardiphaga sp. OK245	0.93 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.93 %
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	0.93 %
Bradyrhizobium sediminis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium sediminis	0.93 %
Methylovirgula	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula	0.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005328\|Ga0070676_11330582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	549	Open in IMG/M
3300005332\|Ga0066388_107033908	Not Available	566	Open in IMG/M
3300005438\|Ga0070701_10732518	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300005547\|Ga0070693_100857514	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300005764\|Ga0066903_101119844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1453	Open in IMG/M
3300005764\|Ga0066903_108569991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → unclassified Methylocapsa → Methylocapsa sp. S129	521	Open in IMG/M
3300005842\|Ga0068858_100695596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	989	Open in IMG/M
3300006047\|Ga0075024_100778941	Not Available	533	Open in IMG/M
3300006172\|Ga0075018_10689407	Not Available	551	Open in IMG/M
3300006176\|Ga0070765_101164747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	728	Open in IMG/M
3300009177\|Ga0105248_10215841	All Organisms → cellular organisms → Bacteria → Proteobacteria	2160	Open in IMG/M
3300009520\|Ga0116214_1383378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	547	Open in IMG/M
3300009521\|Ga0116222_1013758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3758	Open in IMG/M
3300009522\|Ga0116218_1172557	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300009523\|Ga0116221_1373025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. FHR47	620	Open in IMG/M
3300009637\|Ga0116118_1195209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga → unclassified Tardiphaga → Tardiphaga sp. OK245	637	Open in IMG/M
3300009646\|Ga0116132_1054601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1276	Open in IMG/M
3300009672\|Ga0116215_1300337	All Organisms → cellular organisms → Bacteria → Proteobacteria	698	Open in IMG/M
3300009672\|Ga0116215_1382904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	609	Open in IMG/M
3300009698\|Ga0116216_10342208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. FHR47	910	Open in IMG/M
3300009698\|Ga0116216_10773287	Not Available	576	Open in IMG/M
3300009824\|Ga0116219_10638885	Not Available	584	Open in IMG/M
3300009826\|Ga0123355_11039428	Not Available	863	Open in IMG/M
3300010046\|Ga0126384_12476503	Not Available	503	Open in IMG/M
3300010048\|Ga0126373_10636163	All Organisms → cellular organisms → Bacteria → Proteobacteria	1122	Open in IMG/M
3300010048\|Ga0126373_12586697	Not Available	566	Open in IMG/M
3300010049\|Ga0123356_11399909	Not Available	860	Open in IMG/M
3300010341\|Ga0074045_10427068	Not Available	857	Open in IMG/M
3300010361\|Ga0126378_10800643	All Organisms → cellular organisms → Bacteria → Proteobacteria	1052	Open in IMG/M
3300010366\|Ga0126379_12868779	All Organisms → cellular organisms → Bacteria → Proteobacteria	577	Open in IMG/M
3300010373\|Ga0134128_12806230	Not Available	537	Open in IMG/M
3300010376\|Ga0126381_100967753	All Organisms → cellular organisms → Bacteria → Proteobacteria	1227	Open in IMG/M
3300010376\|Ga0126381_104114314	Not Available	565	Open in IMG/M
3300010379\|Ga0136449_103695701	Not Available	578	Open in IMG/M
3300010398\|Ga0126383_10740544	All Organisms → cellular organisms → Bacteria → Proteobacteria	1063	Open in IMG/M
3300010398\|Ga0126383_11031573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	911	Open in IMG/M
3300010398\|Ga0126383_11697264	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300010399\|Ga0134127_10360488	All Organisms → cellular organisms → Bacteria → Proteobacteria	1424	Open in IMG/M
3300010400\|Ga0134122_10739131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	930	Open in IMG/M
3300012088\|Ga0153944_1105943	Not Available	537	Open in IMG/M
3300012958\|Ga0164299_10357936	All Organisms → cellular organisms → Bacteria → Proteobacteria	921	Open in IMG/M
3300012989\|Ga0164305_10832486	Not Available	769	Open in IMG/M
3300013297\|Ga0157378_10674648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1051	Open in IMG/M
3300013308\|Ga0157375_11361740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	835	Open in IMG/M
3300014164\|Ga0181532_10031064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3703	Open in IMG/M
3300015371\|Ga0132258_12358286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1334	Open in IMG/M
3300016270\|Ga0182036_11654189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → unclassified Methylocapsa → Methylocapsa sp. S129	540	Open in IMG/M
3300016294\|Ga0182041_11457257	Not Available	629	Open in IMG/M
3300016294\|Ga0182041_11471516	Not Available	626	Open in IMG/M
3300016387\|Ga0182040_10236672	All Organisms → cellular organisms → Bacteria → Proteobacteria	1364	Open in IMG/M
3300016422\|Ga0182039_11552058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	604	Open in IMG/M
3300017821\|Ga0187812_1116743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	867	Open in IMG/M
3300017929\|Ga0187849_1159214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. FHR47	905	Open in IMG/M
3300017946\|Ga0187879_10278914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	929	Open in IMG/M
3300017946\|Ga0187879_10454137	Not Available	710	Open in IMG/M
3300017948\|Ga0187847_10727170	Not Available	559	Open in IMG/M
3300017970\|Ga0187783_10203635	All Organisms → cellular organisms → Bacteria	1453	Open in IMG/M
3300017970\|Ga0187783_10296815	Not Available	1179	Open in IMG/M
3300017970\|Ga0187783_10521940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	860	Open in IMG/M
3300017974\|Ga0187777_10681096	Not Available	728	Open in IMG/M
3300017993\|Ga0187823_10096383	Not Available	879	Open in IMG/M
3300018014\|Ga0187860_1183400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	870	Open in IMG/M
3300018020\|Ga0187861_10419772	Not Available	559	Open in IMG/M
3300018040\|Ga0187862_10260133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. FHR47	1111	Open in IMG/M
3300018040\|Ga0187862_10660521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. FHR47	614	Open in IMG/M
3300018058\|Ga0187766_10296578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium sediminis	1046	Open in IMG/M
3300018062\|Ga0187784_11472403	Not Available	539	Open in IMG/M
3300018088\|Ga0187771_10072461	All Organisms → cellular organisms → Bacteria → Proteobacteria	2726	Open in IMG/M
3300019361\|Ga0173482_10455284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	609	Open in IMG/M
3300020579\|Ga0210407_11006984	Not Available	635	Open in IMG/M
3300020579\|Ga0210407_11157727	Not Available	584	Open in IMG/M
3300020583\|Ga0210401_11156794	Not Available	632	Open in IMG/M
3300021088\|Ga0210404_10272017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	926	Open in IMG/M
3300021178\|Ga0210408_10933126	Not Available	674	Open in IMG/M
3300021402\|Ga0210385_10758515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	744	Open in IMG/M
3300021405\|Ga0210387_10317044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1374	Open in IMG/M
3300021407\|Ga0210383_10339345	Not Available	1294	Open in IMG/M
3300021474\|Ga0210390_10144166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2005	Open in IMG/M
3300021474\|Ga0210390_10777578	Not Available	794	Open in IMG/M
3300021478\|Ga0210402_11163473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	699	Open in IMG/M
3300021479\|Ga0210410_10945386	Not Available	750	Open in IMG/M
3300021479\|Ga0210410_11114263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	680	Open in IMG/M
3300025925\|Ga0207650_11748397	Not Available	527	Open in IMG/M
3300025929\|Ga0207664_11008287	Not Available	746	Open in IMG/M
3300027570\|Ga0208043_1162222	Not Available	578	Open in IMG/M
3300027575\|Ga0209525_1046393	Not Available	1062	Open in IMG/M
3300027795\|Ga0209139_10028592	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1982	Open in IMG/M
3300027908\|Ga0209006_10114154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2389	Open in IMG/M
3300028747\|Ga0302219_10163152	All Organisms → cellular organisms → Bacteria → Proteobacteria	855	Open in IMG/M
3300030509\|Ga0302183_10236726	Not Available	710	Open in IMG/M
3300030618\|Ga0311354_10832164	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300031573\|Ga0310915_10517083	Not Available	848	Open in IMG/M
3300031708\|Ga0310686_102254962	Not Available	630	Open in IMG/M
3300031708\|Ga0310686_111427232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	9415	Open in IMG/M
3300031719\|Ga0306917_11374957	Not Available	545	Open in IMG/M
3300031770\|Ga0318521_11041978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	502	Open in IMG/M
3300031781\|Ga0318547_10542707	Not Available	719	Open in IMG/M
3300031890\|Ga0306925_10701592	All Organisms → cellular organisms → Bacteria → Proteobacteria	1059	Open in IMG/M
3300031910\|Ga0306923_10897871	Not Available	971	Open in IMG/M
3300031942\|Ga0310916_11288997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → unclassified Methylocapsa → Methylocapsa sp. S129	602	Open in IMG/M
3300032076\|Ga0306924_10967065	Not Available	937	Open in IMG/M
3300032076\|Ga0306924_11881961	Not Available	621	Open in IMG/M
3300032160\|Ga0311301_10679731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula	1454	Open in IMG/M
3300032160\|Ga0311301_11897218	All Organisms → cellular organisms → Bacteria → Proteobacteria	702	Open in IMG/M
3300032895\|Ga0335074_10211307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	2346	Open in IMG/M
3300033134\|Ga0335073_11708546	Not Available	594	Open in IMG/M
3300033561\|Ga0371490_1113230	Not Available	705	Open in IMG/M
3300034163\|Ga0370515_0370933	Not Available	604	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.74%
Host-Associated	Host-Associated	9.26%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.93%
Aquatic	Environmental → Aquatic	14.81%
Plants	Host-Associated → Plants	6.48%
Arthropoda	Host-Associated → Arthropoda	1.85%
Fungi	Host-Associated → Fungi	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.22%
Freshwater	Environmental → Aquatic → Freshwater	12.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.63%
Peat	Environmental → Terrestrial → Peat	3.70%
Sediment	Environmental → Aquatic → Sediment	1.85%
Digestive System	Host-Associated → Arthropoda → Digestive System	1.85%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.85%
Mycelium	Host-Associated → Fungi → Mycelium	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.70%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	12.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	10.19%
Loam	Environmental → Terrestrial → Soil → Loam	8.33%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.78%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.85%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	1.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.93%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.70%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.00%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.19%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	9.26%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.56%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.78%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.85%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.85%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.93%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.74%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	12.04%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.26%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	7.41%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.63%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.78%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.78%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.85%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.85%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.85%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	1.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.85%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.93%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.93%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.93%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009637	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40	Environmental	Open in IMG/M
3300009646	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300009826	Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010049	Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3	Host-Associated	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012088	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ028 MetaG	Host-Associated	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300018014	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40	Environmental	Open in IMG/M
3300018020	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300027570	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)	Environmental	Open in IMG/M
3300027575	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033561	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB28FN SIP fraction	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0070676_113305821	3300005328	Miscanthus Rhizosphere	GRFKIGQDSPERPVNLIVGAGYQFAVTTDPVVKNNWVATLRVTF*
Ga0066388_1070339081	3300005332	Tropical Forest Soil	LGRFKLANDTPTRPVNLIIGAGYQVAVTPNPVTQNNFVGTIRVTF*
Ga0070701_107325181	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	LTPGIIFGRFKIGQDSPERPVNLIVGAGYQFAVTTDPVVKNNWVATLRVTF*
Ga0070693_1008575141	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	QVLLTPGIIFGRFKIGQDSPERPVNLIVGAGYQFAVTTDPVVKNNWVATLRVTF*
Ga0066903_1011198441	3300005764	Tropical Forest Soil	EGLSQVLLTPGIIFGRFKIGMDTPTRPINLIFGAGYQFSVTSNPVTANNWVATARITF*
Ga0066903_1085699912	3300005764	Tropical Forest Soil	RFKIGQDSPERPVNLIVGAGYQFAVTSDPVVKNNWVATIRVTF*
Ga0068858_1006955962	3300005842	Switchgrass Rhizosphere	FGRFKIGQDTPERAVNLIVGAGYQFAVTTDPVVKNNWVATIRVTF*
Ga0075024_1007789412	3300006047	Watersheds	IIFGRFKIGQDSPTRPVNLIIGAGYQFAVTGDPVVKNNWVATMRITF*
Ga0075018_106894072	3300006172	Watersheds	LILGRFQIANDTPTRPVNLIIGAGYQVAVTPNPVTQNNFVGTIRVTF*
Ga0070765_1011647472	3300006176	Soil	DSPTRPINLIVGAGYQVAVTPNPVVQNNFVGTIRITF*
Ga0105248_102158413	3300009177	Switchgrass Rhizosphere	FGRFKIGQDSPERPVNLIVGAGYQFAVTTDPVVKNNWVATLRVTF*
Ga0116214_13833781	3300009520	Peatlands Soil	TPGIIFGRFKIGMDSPTRPINLIVGAGYQFAVTPNPVIQNNFVGTVRVTF*
Ga0116222_10137581	3300009521	Peatlands Soil	SPTRPINLIVGAGYQFAVTPNPVIQNNFVGTVRVTF*
Ga0116218_11725572	3300009522	Peatlands Soil	YPNGEHQGLSQVLLTPGIIFGRFKIGQDSPTRPVNLIFGVGYQVAVTPNPVVQNNVVATLRVTF*
Ga0116221_13730253	3300009523	Peatlands Soil	TRPINLIFGAGYQIAVTPNPVTSNNWVATARITF*
Ga0116118_11952092	3300009637	Peatland	LSQVLLTPGIIFGRFKIGMDSPTRPINLIIGAGYQFAVTPNPITQNNVVATVRVTF*
Ga0116132_10546011	3300009646	Peatland	IGMDSPTRPVNLIFGVGYQFAVTPTPVVQNNVVATVRVTF*
Ga0116215_13003371	3300009672	Peatlands Soil	PTRPINLIFGAGYQVAVTPNPVTQNNVVATMRITF*
Ga0116215_13829041	3300009672	Peatlands Soil	RFRLGMDTPTRPINLIVGAGYQVAVTPNPVTQNNVVATVRVTF*
Ga0116216_103422081	3300009698	Peatlands Soil	SPTRPINLIFGAGYQIAVTPNPVVNNNWVATARITF*
Ga0116216_107732871	3300009698	Peatlands Soil	TPGIIFGRFPIGMDSPTRPIHLIFGAGYQIAVTGDPVVKNNWVATLRITF*
Ga0116219_106388851	3300009824	Peatlands Soil	IFGRFKIGMDSPTRPINLIFGAGYQVAVTPNPVTQNNVVATMRITF*
Ga0123355_110394283	3300009826	Termite Gut	FKIGQSTPNRPINLIFGAGYQVAVTSNPVTKNNFVATVRVTF*
Ga0126384_124765031	3300010046	Tropical Forest Soil	MLTPGVIFGRFQIGNVTATRPANLIFGAGYQIAVTPNPVVHDNVV
Ga0126373_106361631	3300010048	Tropical Forest Soil	QVLLTPGIIFGRFKIGMDTPTRPINLIFGAGYQFSVTSNPVTANNWVATARITF*
Ga0126373_125866971	3300010048	Tropical Forest Soil	VLLTPGIIFGRFKIGMDTPTRPINLIFGAGYQFSVTSNPVTANNWVATTRITF*
Ga0123356_113999091	3300010049	Termite Gut	GRFKIGQSTPNRPINLIFGAGYQVAVTSNPVTKNNFVATVRVTF*
Ga0074045_104270682	3300010341	Bog Forest Soil	LLTPGIIFGRFKIGQDTPTRQINLIFGAGYQVAVTSNPVIKNNFVATVRI
Ga0126378_108006433	3300010361	Tropical Forest Soil	TPGIIFGRFKIGMDTPTRPMNLIFGAGYQFSVTSNPVIANNWIATARITF*
Ga0126379_128687792	3300010366	Tropical Forest Soil	FKIGMDTPTRPINLIFGAGYQFSVTSNPVTANNWVATARITF*
Ga0134128_128062302	3300010373	Terrestrial Soil	PGIIFGRFKIGQDSPTRPMNLIFGVGYQVAVTPNPVIQNNLVASVRITF*
Ga0126381_1009677534	3300010376	Tropical Forest Soil	QVLLTPGIIFGRFKIGMVTPTRPMNLIFGAGYQFSVTSNPVIANNWVATTRITF*
Ga0126381_1041143141	3300010376	Tropical Forest Soil	RFKIGMDTPTRPINLIFGAGYQFSVTSNPVNDNNWIATTRITF*
Ga0136449_1036957011	3300010379	Peatlands Soil	YPNGEHQGLSQVLLTPGIIFGRFKIGQDSPTRPVNLIFGVGYQVAVTPNPVVQNNVVATVRITF*
Ga0126383_107405442	3300010398	Tropical Forest Soil	MLTPGLILGRFKLANDTPTRPVNLIIGAGYQVAVTPNPVTQNNFVGTIRVTF*
Ga0126383_110315733	3300010398	Tropical Forest Soil	FKIGMDTPTRPINLIFGAGYQFSVTSNPVIANNWVATTRITF*
Ga0126383_116972641	3300010398	Tropical Forest Soil	IGMDTPTRPINLIFGAGYQFSVASNPVTANNWVATTRITF*
Ga0134127_103604881	3300010399	Terrestrial Soil	GIHTGLSQVLLTPGIIFGRFKIGQDSPERPVNLIVGAGYQFAVTTDPVVKNNWVATLRVTF*
Ga0134122_107391312	3300010400	Terrestrial Soil	GLDTPTRPVNLIVGAGYQIAVTSDPVVKNNWVATIRVTF*
Ga0153944_11059431	3300012088	Attine Ant Fungus Gardens	TPGIIFGRFKIGMDSPTRPVNLIVGAGYQFAVTDNPVVKNNVVVTVRVTF*
Ga0164299_103579362	3300012958	Soil	KLPNHTPTRPVNRIIGAGYQVAVTPNPVTQNNFVGTIRVTF*
Ga0164305_108324862	3300012989	Soil	PGVIFGRFQIGNVTATRPANLVFGAGYQIAVTPNPVTHDNVVATLRITF*
Ga0157378_106746481	3300013297	Miscanthus Rhizosphere	NGIHTGLNQVLLTPGIIFGRFKIGQDNSERPVNLIVGAGYQFAVTTDPVVKNNWVATIRVTF*
Ga0157375_113617402	3300013308	Miscanthus Rhizosphere	PNGIHTGLNQVLLTPRIIFGRFKIGQDSPERPVNLIVGAGYQFAVTTDPVVKNNWVATIRVTF*
Ga0181532_100310645	3300014164	Bog	LLTPGIIFGRFKIGMDSPTRPINLIIGAGYQFAVTPTPVVQNNVVATVRITF*
Ga0132258_123582861	3300015371	Arabidopsis Rhizosphere	GLNQVLLTPGIIFGRFKIGQDTPTRAVNLIVGAGYQIAVTSDPVVKNNWVATIRVTF*
Ga0182036_116541892	3300016270	Soil	PTRPINLIFGAGYQFAVTGDPVVKNNWVATMRITF
Ga0182041_114572571	3300016294	Soil	VLLRPGIIFGRFKIGMDTPTRPINLIFGAGYQFSVTSNPVIANNWIATTRITF
Ga0182041_114715162	3300016294	Soil	CENRRANDTPTRPVNLIIGAGYQVAVTPNPVTQNNFVGTIRVTF
Ga0182040_102366721	3300016387	Soil	ANDTPTRPVNLIIGAGYQVAVTPNPVTQNNFVGTIRVTF
Ga0182039_115520581	3300016422	Soil	LTPGLILGRFQIGNDTPTRPINLIIGAGYQVAVTANPVTQNNFVGSVRITF
Ga0187812_11167431	3300017821	Freshwater Sediment	MDSPTRPINLIFGAGYQIAVTPNPVISNNWVATVRITF
Ga0187849_11592141	3300017929	Peatland	FKIGMDSPTRPINLIFGAGYQIAVTPNPVTSNNWVATARITF
Ga0187879_102789141	3300017946	Peatland	NGEHQGLSQVLLTPGIIFGRFKIGMDSPTRPINLIFGAGYQIAVTPNPVTQNNWVATARITF
Ga0187879_104541372	3300017946	Peatland	HVGLSQVLLTPGIIFGRFKIGMDSPTRPINLIFGAGYQVAVTPNPVTQNNVVATMRITF
Ga0187847_107271701	3300017948	Peatland	QLLITPGLILGRFKIGMDSPTRPINLIVGAGYQIAVTPNPVVQNNIVATVRVTF
Ga0187783_102036353	3300017970	Tropical Peatland	HVGLTQVLLTPGLILGRFPIGYDTATRPINLIIGAGYQIAVTPNPVTQNNFVGTFRITF
Ga0187783_102968153	3300017970	Tropical Peatland	ILGRFPIGYDTATRPINLIIGAGYQIAVTPNPVTQNNFVGTFRITF
Ga0187783_105219402	3300017970	Tropical Peatland	LLTPGIIFGRFKIGQSGLTRPINLIFGAGYQAAVTSNPVVKNNFVATLRITF
Ga0187777_106810961	3300017974	Tropical Peatland	GLILGRFQIGNDTATRPINLIIGAGYQIAVTANPVTQNNFVGTLRITF
Ga0187823_100963831	3300017993	Freshwater Sediment	QAMPTPGLILGRFQIAKDTPTRPVNLIIGAGYQVAVTPNPVTQNNFVGTVRVTF
Ga0187860_11834001	3300018014	Peatland	WPNGEHVGLSQVLLTPGIIFGRFKIGMDSPTRPINLIFGAGYQVAVTPNPVTQNNVVATMRITF
Ga0187861_104197721	3300018020	Peatland	IIFGRFKIGMDSPTRPINLIFGAGYQIAVTPNPVTSNNWVATARITF
Ga0187862_102601333	3300018040	Peatland	EHQGLSQVLLTPGIIFGRFKIGMDSPTRPINLIFGAGYQIAVTPNPVVNNNWVATARITF
Ga0187862_106605213	3300018040	Peatland	LTPGIIFGRFKIGMDSPTRPINLIFGAGYQIAVTPNPVTQNNWVATARITF
Ga0187766_102965782	3300018058	Tropical Peatland	TPGIIFGRFKIGQDTPTRPINLIFGAGYQFAVTDNPVIANNWVATVRITF
Ga0187784_114724031	3300018062	Tropical Peatland	LPRDFSPTGPVDLIIGAGYQFAVMSTPVVLNNFVGTIRVRF
Ga0187771_100724611	3300018088	Tropical Peatland	LPRHFSPTRPVDLIIGAGYQFAVMATPVVENNFVGTIRMTF
Ga0173482_104552841	3300019361	Soil	DTPTRPVNLIVGAGYQIAVTSDPVVKNNWVATIRVTF
Ga0210407_110069842	3300020579	Soil	IIFGRFKIGQDSPTRPINLIIGAGYQFAVTSDPVVKNNWVATVRVTF
Ga0210407_111577271	3300020579	Soil	ATRPANLVFGAGYQIAVTPNPVTHDNVVATLRITF
Ga0210401_111567941	3300020583	Soil	IFGRFQIGNVTATRPAHLIFGAGYQVAVTPNPVTHDNVVATFRITF
Ga0210404_102720172	3300021088	Soil	TPGIIFGRFKIGQDSPTRPINLIIGAGYQFAVTSDPVVKNNWVATLRVTF
Ga0210408_109331262	3300021178	Soil	QVLLTPGIIFGRFKIGQDSPTRPVNLIIGAGYQFAVTSDPVVKNNWVATLRITF
Ga0210385_107585152	3300021402	Soil	VLLTPGIIFGRFKIGMDSPTRPINLIFGAGYQFAVTSNPVTANNWVATMRITF
Ga0210387_103170443	3300021405	Soil	SQVLLTPGIIFGRFKIGQDSPTRPINLIIGAGYQFAVTSDPVVKNNWVATLRVTF
Ga0210383_103393451	3300021407	Soil	HQGLSQVLLTPGLILGRFQIGNDTPTRPINLIIGAGYQVAVTPNPVTSNNFVGTMRITF
Ga0210390_101441663	3300021474	Soil	VLLTPGIIFGRFKIGQDSPTRPINLIIGAGYQFAVTSDPVVKNNWVATLRVTF
Ga0210390_107775782	3300021474	Soil	PGVIFGRFQIGNVTATRPANLVFGAGYQIAVTPNPVTHDNVVATLRITF
Ga0210402_111634732	3300021478	Soil	LLTPGLILGRFQIGNDTPTRPINLIIGAGYQMAVTPNPVTQNNFVGTVRVTF
Ga0210410_109453861	3300021479	Soil	LGRFRIGMDSPTRPINLIVGAGYQVAVTPNPVVQNNFVGTIRITF
Ga0210410_111142632	3300021479	Soil	LLTPGIILGRFKIGRDTATRPINLIIGAGYQVAVTSNPVTKNNFVATMRITF
Ga0207650_117483972	3300025925	Switchgrass Rhizosphere	VLLTPGIIFGRFKIGQDSPERPVNLIVGAGYQFAVTTDPVVKNNWVATIRVTF
Ga0207664_110082871	3300025929	Agricultural Soil	GVLLTPGLILGRFKLANDTPTRPVNLIIGAGYQVAVTPNPVTQNNFVGTIRVTF
Ga0208043_11622221	3300027570	Peatlands Soil	PNGIHQGLSQVLLTPGIIFGRFKIGMDSPTRPINLIVGAGYQFAVTPNPVIQNNFVGTVRVTF
Ga0209525_10463931	3300027575	Forest Soil	FKMGQDTATRPINLIIGAGYQMAVTANPITKNNFVATMRVTF
Ga0209139_100285922	3300027795	Bog Forest Soil	FGRFKIGQDTPTRPINLIFGAGYQVAVTSNPVIKNNFVATVRITF
Ga0209006_101141543	3300027908	Forest Soil	ILGRFKIGQDTATRPINLIIGAGYQMAVTANPVTKNNFVATMRVTF
Ga0302219_101631521	3300028747	Palsa	PNGEHVGLSQVLLTPGIIFGRFKIGMDSPTRPMNLIFGVGYQVAVTPNPVTQNNVVATMRITF
Ga0302183_102367261	3300030509	Palsa	QGLSQVLLTPGIIFGRFKIGQDTPTRPINLIFGVGYQVAVTPNPVVQNNFVATVRVTF
Ga0311354_108321643	3300030618	Palsa	QVLLTPGIIFGRFKIGQGTPTRPINLIFGVGYQVAVTPNPVVQNNFVGTVRITF
Ga0310915_105170831	3300031573	Soil	CWLEPSHVTPGLILGRFKLANDTPTRPVNLIIGAGYQVAVTPNPVTQNNFVGTIRVTF
Ga0310686_1022549622	3300031708	Soil	GLNQVLLTPGIIFGRFKIGQDTATRPINLIFGAGYQMAVTANPVVKNNFVATMRITF
Ga0310686_1114272326	3300031708	Soil	LNQVLLTPGVILGRFRIGMDSPTRPINLIVGAGYQVAVTPNPVVQNNFVGTIRITF
Ga0306917_113749571	3300031719	Soil	LLTPGLILGRFQIGNDTPTRPINLIIGAGYQMAVTQNPVTQNNFVGTVRVTF
Ga0318521_110419781	3300031770	Soil	YEYWPNGQHQHLSQVLLTPGIIFGRFKIGMDTPTRPINLIFGAGYQFSVTSNPVTANNWVATTRITF
Ga0318547_105427071	3300031781	Soil	WDTTPGRRLCENRRANDATRPVNLIIGAGYQVAVTPNPVTQNNFVGTIRVTF
Ga0306925_107015922	3300031890	Soil	NRRSNDTPTRPVNLIIGAGYQVAVTPNPVTQNNFVGTIRVTF
Ga0306923_108978712	3300031910	Soil	LLLRPGIIFGRFKIGMDTPTRPINLIFGAGYQFSVTSNPVIANNWIATTRITF
Ga0310916_112889972	3300031942	Soil	IHQDVSQVLLTPGIIFGRFKIGQDSPTRPVNLIFGAGYQFAVTGDPVVKNNWVASMRITF
Ga0306924_109670651	3300032076	Soil	RFQIGNDSPTRPINLIVGAGYQIAVTPNPVTQNNFVGTIRVTF
Ga0306924_118819611	3300032076	Soil	TPGIIFGRFKIGMDTPTRPINLIFGAGYQFSVTSNPVIANNWIATTRITF
Ga0311301_106797311	3300032160	Peatlands Soil	GRFKIGMDSPTRPINLIFGAGYQIAVTPNPVTSNNWVATARITF
Ga0311301_118972182	3300032160	Peatlands Soil	LAPRQNLIFGVGYQMAATPNPVIQNNVVVTARLTF
Ga0335074_102113073	3300032895	Soil	LSQLLLTPGLILGRFKIGQDTATRPINLIIGAGYQMAVTANPVTKNNFVATARITF
Ga0335073_117085461	3300033134	Soil	VLLTPGLILGRFQIGNDTPTRPINLIIGAGYQMAVTANPVTQNNFVGTLRVTF
Ga0371490_11132301	3300033561	Peat Soil	LILGRFKIGMDSPTRPINLIVGAGYQIAVTPNPVVQNNIVATVRVTF
Ga0370515_0370933_452_604	3300034163	Untreated Peat Soil	TPGIIFGRFKIGMDSPTRPINLIVGAGYQIAVTPNPVVQNNVVATMRITF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F090818

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences