Metagenome / Metatranscriptome Family F090810

Basic Information
Family ID	F090810
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	62 residues
Representative Sequence	MFPLTPPKQLTFLISVVLAIAAVVVRYLVYTGVQMPPAFPTGGFLLLLVAYLVLVAGNLFEGA
Number of Associated Samples	97
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	71.03 %
% of genes near scaffold ends (potentially truncated)	30.56 %
% of genes from short scaffolds (< 2000 bps)	84.26 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Most Common Taxonomy
Group	Bacteria (50.926 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.593 % of family members)
Environment Ontology (ENVO)	Unclassified (32.407 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.519 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 49.45% β-sheet: 0.00% Coil/Unstructured: 50.55%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF04828	GFA	6.48
PF02353	CMAS	1.85
PF08543	Phos_pyr_kin	0.93
PF01613	Flavin_Reduct	0.93
PF02310	B12-binding	0.93
PF00691	OmpA	0.93
PF04389	Peptidase_M28	0.93
PF00574	CLP_protease	0.93
PF03176	MMPL	0.93
PF12695	Abhydrolase_5	0.93
PF04055	Radical_SAM	0.93
PF12089	DUF3566	0.93
PF11964	SpoIIAA-like	0.93
PF01391	Collagen	0.93
PF04471	Mrr_cat	0.93
PF01258	zf-dskA_traR	0.93
PF06877	RraB	0.93
PF02771	Acyl-CoA_dh_N	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG3791	Uncharacterized conserved protein	Function unknown [S]	6.48
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	1.85
COG0740	ATP-dependent protease ClpP, protease subunit	Posttranslational modification, protein turnover, chaperones [O]	1.85
COG2230	Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases	Lipid transport and metabolism [I]	1.85
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	1.85
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	1.85
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.93
COG3076	Regulator of RNase E activity RraB	Translation, ribosomal structure and biogenesis [J]	0.93
COG2870	ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase	Cell wall/membrane/envelope biogenesis [M]	0.93
COG2409	Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily	General function prediction only [R]	0.93
COG2240	Pyridoxal/pyridoxine/pyridoxamine kinase	Coenzyme transport and metabolism [H]	0.93
COG0351	Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	Coenzyme transport and metabolism [H]	0.93
COG1853	FMN reductase RutF, DIM6/NTAB family	Energy production and conversion [C]	0.93
COG1734	RNA polymerase-binding transcription factor DksA	Transcription [K]	0.93
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	0.93
COG1030	Membrane-bound serine protease NfeD, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG0524	Sugar or nucleoside kinase, ribokinase family	Carbohydrate transport and metabolism [G]	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.85 %
Unclassified	root	N/A	48.15 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.93 %
Unclassified	root	N/A	48.15 %
Viruses	superkingdom	All Organisms → Viruses	0.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.93 %
Unclassified	root	N/A	48.15 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.15 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	41.67 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.15 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	35.19 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.15 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	27.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.15 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	16.67 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	3.70 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	3.70 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.15 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	13.89 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	3.70 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3.70 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.15 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	3.70 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3.70 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.93 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	0.93 %
Afipia broomeae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia broomeae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16569730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2539	Open in IMG/M
2088090014\|GPIPI_16628781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3523	Open in IMG/M
2088090015\|GPICI_9227896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	11235	Open in IMG/M
2170459016\|G1P06HT02HDJ3S	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
2170459017\|G14TP7Y02FJKJ5	Not Available	590	Open in IMG/M
2228664022\|INPgaii200_c0983785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	964	Open in IMG/M
3300000550\|F24TB_10010620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8094	Open in IMG/M
3300000550\|F24TB_11011457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1418	Open in IMG/M
3300000789\|JGI1027J11758_12688742	Not Available	718	Open in IMG/M
3300000890\|JGI11643J12802_12136498	Not Available	626	Open in IMG/M
3300000955\|JGI1027J12803_101427652	Not Available	876	Open in IMG/M
3300000956\|JGI10216J12902_100086392	Not Available	739	Open in IMG/M
3300001989\|JGI24739J22299_10219190	Not Available	557	Open in IMG/M
3300004114\|Ga0062593_100044621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2697	Open in IMG/M
3300004114\|Ga0062593_102729512	Not Available	563	Open in IMG/M
3300004157\|Ga0062590_102368959	Not Available	560	Open in IMG/M
3300004463\|Ga0063356_100713033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1382	Open in IMG/M
3300004463\|Ga0063356_104653002	Not Available	590	Open in IMG/M
3300005045\|Ga0071328_107065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5743	Open in IMG/M
3300005045\|Ga0071328_173663	All Organisms → cellular organisms → Bacteria → Proteobacteria	2302	Open in IMG/M
3300005290\|Ga0065712_10611589	Not Available	582	Open in IMG/M
3300005328\|Ga0070676_10393346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	963	Open in IMG/M
3300005329\|Ga0070683_100894593	Not Available	851	Open in IMG/M
3300005332\|Ga0066388_105841009	Not Available	622	Open in IMG/M
3300005336\|Ga0070680_100576007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	966	Open in IMG/M
3300005339\|Ga0070660_100058305	All Organisms → cellular organisms → Bacteria → Proteobacteria	2993	Open in IMG/M
3300005343\|Ga0070687_100402915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	898	Open in IMG/M
3300005435\|Ga0070714_101156370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	755	Open in IMG/M
3300005440\|Ga0070705_100004323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6921	Open in IMG/M
3300005563\|Ga0068855_100734936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1054	Open in IMG/M
3300005718\|Ga0068866_10213684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1159	Open in IMG/M
3300005764\|Ga0066903_104430858	Not Available	750	Open in IMG/M
3300005834\|Ga0068851_10626384	Not Available	657	Open in IMG/M
3300006058\|Ga0075432_10476208	Not Available	552	Open in IMG/M
3300006173\|Ga0070716_100054691	Not Available	2281	Open in IMG/M
3300006635\|Ga0075526_1003619	Not Available	1078	Open in IMG/M
3300006792\|Ga0075530_1070010	Not Available	1188	Open in IMG/M
3300006852\|Ga0075433_10560021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1004	Open in IMG/M
3300006854\|Ga0075425_101162756	Not Available	877	Open in IMG/M
3300006871\|Ga0075434_100593442	All Organisms → Viruses → Predicted Viral	1127	Open in IMG/M
3300009053\|Ga0105095_10475765	Not Available	692	Open in IMG/M
3300009053\|Ga0105095_10567744	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300009087\|Ga0105107_10967963	Not Available	593	Open in IMG/M
3300009094\|Ga0111539_11750387	Not Available	721	Open in IMG/M
3300009101\|Ga0105247_10308017	Not Available	1101	Open in IMG/M
3300009147\|Ga0114129_11857106	Not Available	731	Open in IMG/M
3300009157\|Ga0105092_10831342	Not Available	542	Open in IMG/M
3300009162\|Ga0075423_12825150	Not Available	532	Open in IMG/M
3300009488\|Ga0114925_10200977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1321	Open in IMG/M
3300009545\|Ga0105237_10476053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1255	Open in IMG/M
3300009551\|Ga0105238_11870746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	633	Open in IMG/M
3300010371\|Ga0134125_13137980	Not Available	500	Open in IMG/M
3300010397\|Ga0134124_11829756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	642	Open in IMG/M
3300011119\|Ga0105246_10527297	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300012527\|Ga0136633_1164806	Not Available	848	Open in IMG/M
3300012882\|Ga0157304_1034006	Not Available	717	Open in IMG/M
3300012884\|Ga0157300_1015757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	952	Open in IMG/M
3300012895\|Ga0157309_10345353	Not Available	516	Open in IMG/M
3300012897\|Ga0157285_10185360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	644	Open in IMG/M
3300012901\|Ga0157288_10010668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1522	Open in IMG/M
3300012908\|Ga0157286_10213889	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300012911\|Ga0157301_10364890	Not Available	548	Open in IMG/M
3300012915\|Ga0157302_10081342	Not Available	984	Open in IMG/M
3300012957\|Ga0164303_10034027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2123	Open in IMG/M
3300012960\|Ga0164301_11225916	Not Available	604	Open in IMG/M
3300012964\|Ga0153916_10969845	Not Available	931	Open in IMG/M
3300012984\|Ga0164309_10372102	All Organisms → cellular organisms → Bacteria	1056	Open in IMG/M
3300013100\|Ga0157373_10259009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1231	Open in IMG/M
3300013104\|Ga0157370_10272647	Not Available	1563	Open in IMG/M
3300016294\|Ga0182041_10327525	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1279	Open in IMG/M
3300016341\|Ga0182035_10524568	Not Available	1014	Open in IMG/M
3300016341\|Ga0182035_11278374	Not Available	657	Open in IMG/M
3300016371\|Ga0182034_11443581	Not Available	602	Open in IMG/M
3300018422\|Ga0190265_10004121	All Organisms → cellular organisms → Bacteria → Proteobacteria	10040	Open in IMG/M
3300018422\|Ga0190265_10353434	All Organisms → cellular organisms → Bacteria	1556	Open in IMG/M
3300018429\|Ga0190272_10208647	All Organisms → cellular organisms → Bacteria → Proteobacteria	1421	Open in IMG/M
3300018432\|Ga0190275_11592566	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	731	Open in IMG/M
3300018466\|Ga0190268_12375065	Not Available	502	Open in IMG/M
3300019361\|Ga0173482_10583317	Not Available	558	Open in IMG/M
3300020078\|Ga0206352_11309433	Not Available	1198	Open in IMG/M
3300020080\|Ga0206350_11353981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	802	Open in IMG/M
3300020080\|Ga0206350_11379726	Not Available	680	Open in IMG/M
3300020082\|Ga0206353_10255843	Not Available	1260	Open in IMG/M
3300022889\|Ga0247785_1052552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	518	Open in IMG/M
3300024265\|Ga0209976_10706568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia broomeae	527	Open in IMG/M
3300025160\|Ga0209109_10290179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	784	Open in IMG/M
3300025313\|Ga0209431_10145803	Not Available	1872	Open in IMG/M
3300025325\|Ga0209341_10709208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	774	Open in IMG/M
3300025327\|Ga0209751_10657397	Not Available	836	Open in IMG/M
3300025899\|Ga0207642_10281135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	957	Open in IMG/M
3300025918\|Ga0207662_10775945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	675	Open in IMG/M
3300025932\|Ga0207690_10054591	Not Available	2687	Open in IMG/M
3300025940\|Ga0207691_10046950	All Organisms → cellular organisms → Bacteria → Proteobacteria	3966	Open in IMG/M
3300026116\|Ga0207674_10471112	All Organisms → cellular organisms → Bacteria	1214	Open in IMG/M
3300027561\|Ga0209887_1101365	Not Available	581	Open in IMG/M
3300027765\|Ga0209073_10373391	All Organisms → cellular organisms → Bacteria → Proteobacteria	580	Open in IMG/M
3300030006\|Ga0299907_11104813	Not Available	575	Open in IMG/M
3300031228\|Ga0299914_11062934	Not Available	657	Open in IMG/M
3300031229\|Ga0299913_10508266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1191	Open in IMG/M
3300031949\|Ga0214473_10090376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3577	Open in IMG/M
3300031949\|Ga0214473_12194881	Not Available	532	Open in IMG/M
3300032076\|Ga0306924_11911649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	615	Open in IMG/M
3300032180\|Ga0307471_100546175	Not Available	1313	Open in IMG/M
3300032205\|Ga0307472_101745990	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300032261\|Ga0306920_100396292	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2053	Open in IMG/M
3300033407\|Ga0214472_10914369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	782	Open in IMG/M
3300033412\|Ga0310810_10440337	All Organisms → cellular organisms → Bacteria → Proteobacteria	1325	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	74.07%
Host-Associated	Host-Associated	24.07%
Engineered	Engineered	1.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	66.67%
Plants	Host-Associated → Plants	24.07%
Aquatic	Environmental → Aquatic	7.41%
Solid Waste	Engineered → Solid Waste	1.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.74%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.33%
Freshwater	Environmental → Aquatic → Freshwater	5.56%
Marine	Environmental → Aquatic → Marine	1.85%
Grass	Engineered → Solid Waste → Grass	1.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.85%
Loam	Environmental → Terrestrial → Soil → Loam	13.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.04%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.41%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.70%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.70%
Oceanic	Environmental → Aquatic → Marine → Oceanic	1.85%
Composting	Engineered → Solid Waste → Grass → Composting	1.85%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.93%
Ice	Environmental → Aquatic → Freshwater → Ice	0.93%
Sand	Environmental → Terrestrial → Soil → Sand	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.07%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.04%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.41%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.41%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.41%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.48%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.63%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	4.63%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.70%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.70%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	3.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.70%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	1.85%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.85%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	17.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.41%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	4.63%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	3.70%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	3.70%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	3.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.78%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	1.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.85%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.85%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.85%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.85%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.85%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.85%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	1.85%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.93%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2170459016	Litter degradation ZMR2	Engineered	Open in IMG/M
2170459017	Litter degradation ZMR4	Engineered	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001989	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005045	Permafrost microbial communities from Fox Tunnel, Fairbanks, Alaska, USA	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006635	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-three	Environmental	Open in IMG/M
3300006792	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL1-D	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009488	Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaG	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012527	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ83 (22.06)	Environmental	Open in IMG/M
3300012882	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2	Environmental	Open in IMG/M
3300012884	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2	Environmental	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022889	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S096-311B-4	Environmental	Open in IMG/M
3300024265	Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00157 metaG (SPAdes)	Environmental	Open in IMG/M
3300025160	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2	Environmental	Open in IMG/M
3300025313	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)	Environmental	Open in IMG/M
3300025325	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2 (SPAdes)	Environmental	Open in IMG/M
3300025327	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1 (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027561	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033407	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_03268620	2088090014	Soil	MFPLTPPKQLTFFISVALAIAAVVVRFLVYTGVQMPSAFPTGGFLLLLVAYLVLVAGNLFEGA
GPIPI_00295540	2088090014	Soil	MFPLTPPKQLTFLISVVLAVAAVVVRYLVYTTGVQLPPLFPAGGFLLLLIAYLVLVAGNLFEGA
GPICI_01753890	2088090015	Soil	MFPLTPPKQLTFLISVVLAVAAVVVRYLVYTGVQLPPLFPAGGFLLLLIAYLVLVAGNLFEGA
2ZMR_03722100	2170459016	Switchgrass, Maize And Mischanthus Litter	FPLTPPKQLTFLISVALAIAPL*VRYVVYTGVQMPPAFPTEGFLLLLVAYLVLVFGNLIEGA
4ZMR_03476280	2170459017	Switchgrass, Maize And Mischanthus Litter	MFPLTPPKQLTLLISVALAIAAVVVRYLVYTGVQMPPAFPTGGFLLLLVAYLVLVVGN
INPgaii200_09837852	2228664022	Soil	TFFISVALAIAAVVVRFLVYTGVQMPSAFPTGGFLLLLVAYLVLVAGNLFEGA
F24TB_100106203	3300000550	Soil	MFPLTPPKQLTFLISVVLAVAAVVVRYLVYTGVQLPPLFPAGGFLLLLIAYLVLVAGNLFEGA*
F24TB_110114572	3300000550	Soil	MFPLTPPKQLTFLISVXVAIAAVIVRYLVYTGVQMPPAFPTGGFLLLLVAYLVLVAGNLFEGA*
JGI1027J11758_126887422	3300000789	Soil	MLQLTPPKQVTFLISVVLALAAIVVRYLVYTGVQMPPLFPAGGFLLLLVAYLVLVAGNLFEGA*
JGI11643J12802_121364981	3300000890	Soil	LISVVLAIAAVVLRYLVYTGVQLPPLFPAGGFLLLLIAYLVLVAGNVLEGA*
JGI1027J12803_1014276522	3300000955	Soil	MFPLTPPKQLTFLISVVLAIAAVVLRYLVYTGVQLPPLFPAGGFLLLLIAYLVLVAGNVVEGA*
JGI10216J12902_1000863922	3300000956	Soil	MFPLTPPKQLTFLISVVLAIAAVVLRYLVYTGVQLPPLFPAGGFLLLLIAYLVLVAGNVLEGA*
JGI24739J22299_102191902	3300001989	Corn Rhizosphere	MFPLTPPKQLTXLISVALAIAAVVVRYLVYTGVXMPPAFPTGGFLLLLVAYLVLVVGNLIEGA*
Ga0062593_1000446212	3300004114	Soil	MFPLTPPKQLTFLISVVLAIAAVVVRYLVYTGVQMPPAFPTGGFLLLLVAYLVLVAGNLFEGA*
Ga0062593_1027295121	3300004114	Soil	MFPLTPPKQMTFLISVVLAVAAIVLRYLAYKGVELPSIFPAKGFLLLLIAYLVLVAGNLVEGA*
Ga0062590_1023689591	3300004157	Soil	MFPLTPPKQLTFLISVVLAVAAVVVRYLVYTGVQLPPLFPAGGFLLLLIAYLVLV
Ga0063356_1007130332	3300004463	Arabidopsis Thaliana Rhizosphere	MFPLTPPKQLTFFISVALAIAAVVVRFLVYTGVQMPSAFPTGGFLLLLVAYLVLVAGNLFEGA*
Ga0063356_1046530022	3300004463	Arabidopsis Thaliana Rhizosphere	MMLPLTPPKQVTFLISVVLALAAIVVRYLVYTGVQMPPLFPAGGFLLLLVAYLVLVAGNLFEGA*
Ga0071328_1070652	3300005045	Permafrost	MFPLTPPKQLTFLISAVLAVAAVVVRYLVYTGVEMPAFPTGGFLLLLLGYLVLLAGNLFEGA*
Ga0071328_1736633	3300005045	Permafrost	MFPLTPPKQLTFLIPVVLAVAAVVVRYLVYTGVEMPAFPTGGFLLLLLGYLVLLAGNLFEGA*
Ga0065712_106115892	3300005290	Miscanthus Rhizosphere	MFPLTPPKQLTFLISVALAIAAVVVRYLVYTGVQMPPAFPTGGFLLLLVAYLVLVVGNLIEGA*
Ga0070676_103933462	3300005328	Miscanthus Rhizosphere	MFPLTPPKQLTLLISVALAIAAVVVRYLVYAGVQMPPAFPTGGFLLLLVAYLVLVVGNLIEGA*
Ga0070683_1008945931	3300005329	Corn Rhizosphere	MFPLTPPKQLTFLISVALAIAAVVVRYLVYTGVHMPPAFPTGGFLLLLVAYLVLVVGNLIEGA*
Ga0066388_1058410091	3300005332	Tropical Forest Soil	MFPLTPPKQMTFLISVLLAIAAVVVRYLAYKGVVLPPVFLAKGFLLLLVAYLVLAAGNMVEGA*
Ga0070680_1005760072	3300005336	Corn Rhizosphere	MFPLTPPKQLTFLISVALAIAAVVVRYLVYTGVQMPPAFPTGGFLLLLVAYLVLVVGNLMEGA*
Ga0070660_1000583054	3300005339	Corn Rhizosphere	MFPLTPPKQLTLLISVALAIAAVVVRYLVYTGVQMPPAFPTGGFLLLLVAYLVLVVGNLIEGA*
Ga0070687_1004029152	3300005343	Switchgrass Rhizosphere	QLTFLISVALAIAAVVVRYLVYTGVQMPPAFPTGGFLLLLVAYLVLVVGNLIEGA*
Ga0070714_1011563701	3300005435	Agricultural Soil	PKQLTFLISVALAIAAVVVRYLVYTGVHMPPAFPTGGFLLLLVAYLVLVVGNLIEGA*
Ga0070705_1000043239	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MFPLTPPKQLTFLISVALAIAAVVVRYLVYTGVQMPPAFPTGGFLLLLVAYLVLVFGNLIEGA*
Ga0068855_1007349361	3300005563	Corn Rhizosphere	LTLLISVALAIAAVVVRYLVYTGVQMPPAFPTGGFLLLLVAYLVLVVGNLIEGA*
Ga0068866_102136842	3300005718	Miscanthus Rhizosphere	MFPLTPPKQLTFLISVALAIAAVVVRYVVYTGVQMPPAFPTGGFLLLLVAYLVLVVGNLIEGA*
Ga0066903_1044308582	3300005764	Tropical Forest Soil	MSALTPPKQLTFSSSVALAVAAVIVRFIADFPTAGFLLLLVAYLVLVAGIVLKGV*
Ga0068851_106263841	3300005834	Corn Rhizosphere	LQEAFPLTPPKQLTFLISVALAIAAVVVRYLVYAGVQMPPAFPTGGFLLLLVAYLVLVVGNLIEGA*
Ga0075432_104762081	3300006058	Populus Rhizosphere	TFLISVVLAIAAVVLRYLVYTGVQLPPLFPARGFLLLLIAYLVLVAGNVLEGA*
Ga0070716_1000546911	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MFPLTPPKQLTFLISVALAIAAVVVRYLVYTGVQMPPAFPTGGFLLLLVAYLVLVVGNL
Ga0075526_10036191	3300006635	Arctic Peat Soil	MFPLTPPKQLTFLISVVLAIAAVAVRYLVYSGVQMPPLLPTGGFLLLLVAYLVLAVGNLFEGV*
Ga0075530_10700103	3300006792	Arctic Peat Soil	MLRLTPPKQMTFLISVVLAVIAVVARLMIYMDVEMPITFPTGGFLILLFGYLVLLAGNVLDDV*
Ga0075433_105600212	3300006852	Populus Rhizosphere	LQEAFPLTPPKQLTFLISVALAIAAVVVRYVVYTGVQMPPAFPTGGFLLLLVAYLVLVFGNLIEGA*
Ga0075425_1011627562	3300006854	Populus Rhizosphere	MFPLTPPKQLTFLISVVLAIAAVVLRYLVYTGVQLPPLFPAGGFLLLLIAYLVLVAGNVFEGA*
Ga0075434_1005934421	3300006871	Populus Rhizosphere	STLPTYGLCRRQIMFPLTPPKQMTFLISVVLAVAAIVLRYLAYKGVELPSIFPAKGFLLLLIAYLVLVAGNLVEGA*
Ga0105095_104757651	3300009053	Freshwater Sediment	MTFLISVVLAVSAVVARLLIYMDVEMPITFPTGGFLILLFGYLVLLAGNVLDNV*
Ga0105095_105677441	3300009053	Freshwater Sediment	MFPLTPPKQLTFPISVVLAVAAVVVRYLVYTGVEMPAFPTGGFLLLLLGYLVLLAGNLFEGA*
Ga0105107_109679631	3300009087	Freshwater Sediment	MTFLISVVLAVIAVVARLLIYMDVEMPITFPTGGFLILLFGYLVLLAGNVLDDV*
Ga0111539_117503871	3300009094	Populus Rhizosphere	MFPLTPPKQMTFLISVVLAVAAIVLRYLAYKGVELPSIFPAKGFLLLLIAYLVLVAGNLV
Ga0105247_103080171	3300009101	Switchgrass Rhizosphere	PDTPKQLTFLILVVLAIAAVVVRYLVYTGVQLPPLFPARGFLLLLIAYLVLVAGNVLEGA
Ga0114129_118571062	3300009147	Populus Rhizosphere	LEGVKSHVSPDTPKQLTFLISVVLAIAAVVLRYLVYTGVQLPPLFPARGFLLLLIAYLVLVAGNVLEGA*
Ga0105092_108313421	3300009157	Freshwater Sediment	PCPLTSFCRGIKIMFPLTPPKQLTFPISVVLAVAAVVVRYLVYTGVEMPAFPTGGFLHLLLGYLVLLAGNLFEGA*
Ga0075423_128251501	3300009162	Populus Rhizosphere	TPKQLTFLISVVLAIAAVVLRYLVYTGVQLPPLFPPRGFLLLLIAYLVLVAGNVLEGA*
Ga0114925_102009772	3300009488	Deep Subsurface	MLPLSPPTQLIFLISVVLAIVAVVARYLAYTGVQMPFFPTGGFLLLLIAYLVLVAGNLFKGM*
Ga0105237_104760532	3300009545	Corn Rhizosphere	MFPLTPPKQLTFLISVALAIAAVVVRYLVYAGVQMPPAFPTGGFLLLLVAYLVLVVGNLIEGA*
Ga0105238_118707462	3300009551	Corn Rhizosphere	LTPPKQLTFLISVALAIAAVVVRYLVYTGVQMPPAFPTGGFLLLLVAYLVLVVGNLIEGA
Ga0134125_131379801	3300010371	Terrestrial Soil	MFPLTPPKQMTFLISVVLAVAAPYLAYKGVELPSIFPAKGFLLLLIAYLVLVAGNLVEGA
Ga0134124_118297561	3300010397	Terrestrial Soil	TPPKQLTFLISVVLALAGVVVRYLVYTGVQLPPLFPAGGFLLLLIAYLLLVAGNLFEGA*
Ga0105246_105272972	3300011119	Miscanthus Rhizosphere	MFPLTPPKQLTFLISMALAIAAVVVRYLVYTGVQMPPAFPTGGFLLLLVAYLVLVVGNLIEGA*
Ga0136633_11648061	3300012527	Polar Desert Sand	MFPLTPPKQMTFLISVVLALAAIVVRYLVYTGVQMPPFLPTGGFLLLLVAYLVLVVGNVVEGA*
Ga0157304_10340061	3300012882	Soil	MFPLTPPKQLTLLISVALAIAAVVVRYLVYTGVQMPPAFPTGGFLLLLVAYLVLVAGNLFEGA*
Ga0157300_10157571	3300012884	Soil	QPPKQLTFLISVALAIAAVVVRYLVYTGVQMPPAFPTGGFLLLLVAYLVLVVGNLIEGA*
Ga0157309_103453531	3300012895	Soil	MFPLTPPKQLTLLISVALAIAAVVVRYVVYTGVQMPPAFPTGGFLLLLVAYLVLVFGNLIEGA*
Ga0157285_101853602	3300012897	Soil	MFRLTPPKQLTFLISVALAIAAVVVRYVVYTGVQMPPAFPTGGFLLLLVAYLVLVFGNLIEGA*
Ga0157288_100106683	3300012901	Soil	MFPLTPPKQLTLLISVALAIAAVVVRYLVYTGVQMPPAFPTGGFLLLLVAYLVLVFGNLIEGA*
Ga0157286_102138892	3300012908	Soil	LPTHGLLQGEKIMFPLTPPKQLTFLISVALAIAAVVVRYVVYTGVQMPPAFPTGGFLLLLVAYLVLVFGNLIEGA*
Ga0157301_103648902	3300012911	Soil	MLPLTPPKQLTFLTSVVLAIAAVVVRYLVYTGVQMPPAFPTGGFLLLLVAYLVLVAGNLFEGA*
Ga0157302_100813423	3300012915	Soil	MFPLTPPKQLTLLISVALAIAAVVVRYLVYTGVQMPPAFPTGGFLLLLVAYLVLVFG
Ga0164303_100340274	3300012957	Soil	MFPLTPPKQLTFLISVALAIAAVVVRYLVYTGVQLPPAFPTGGFLLLLVAYLVLVVGNLIEGA*
Ga0164301_112259162	3300012960	Soil	MFPLTPPKQLTFLISVAVAIAAIIVRYLVYTGVHMPPAFPTGGFLLLLVAYLVLVVGNLIEGA*
Ga0153916_109698452	3300012964	Freshwater Wetlands	MQITPPKQMTLFISAALVVVAGVVRFLAYKGTQMPFFHAEGFLLLQVGYLVLLAGNLFEGA*
Ga0164309_103721021	3300012984	Soil	FPLTPPKQLTFLISVALAIAAVVVRYLVYTGVHMPPAFPTGGFLLLLVAYLVLVVGNLIEGA*
Ga0157373_102590091	3300013100	Corn Rhizosphere	RLLTGTFAGGKSMFPLTPPKQLTFLISVALAIAAVVVRYLVYTGVQMPPAFPTGGFLLLLVAYLVLVVGNLIEGA*
Ga0157370_102726475	3300013104	Corn Rhizosphere	MFPLTPPKQLTFLISVALAIAAVVVRYLVYTGVQMPPAFPTGGFLLLLVAYLVLVVGNLI
Ga0182041_103275251	3300016294	Soil	MPALTPPKQLTFSSSVVLAAAAVMVRFLAYTGHMPSVFPTGGFLLLLVAYLVLVAGILFNDV
Ga0182035_105245683	3300016341	Soil	MPALTPPKQLTFSSSVALAVAAVIVRFIADFPTAGFLLLLVAYLVLVAGIVLKGV
Ga0182035_112783741	3300016341	Soil	QLTFSSSVVLAAAAVMVRFLAYTGHMPSVFPTGGFLLLLVAYLVLVAGILFKDV
Ga0182034_114435811	3300016371	Soil	MPALTPPKQLTFSSSVVLAAAAVMVRFLAYTGHMPSVFPTGGFLLLLVAYLVLVAGILFKDV
Ga0190265_100041212	3300018422	Soil	MFPLTPPKQLTFLISVVLAIAAVAVRYLVYSGVQMPPLLPTGGFLLLLVAYLVLAVGNLFEGV
Ga0190265_103534343	3300018422	Soil	MFPLTPPKQLTFLISVALALAAVVIRYLVYTGVEMPPAFPTGGFLLLLVAYLVLVAGNLFEGA
Ga0190272_102086471	3300018429	Soil	MFPLTPPKQLTFLISAVLAVAAVVVRYLVYTGVEMPAFPTGGFLLLLLGYLVLLAGNLFEGA
Ga0190275_115925662	3300018432	Soil	MLPLTPPKQITFLVSILLAIAAVVIRYLVYTGVQMPPLLATGGFLLLLVAYLVLVVGNVFEGA
Ga0190268_123750651	3300018466	Soil	MLLTPPKQMTFFISVALAVIAVLARVLIYMDVEMPITFPTGGFLILLVGYLVLLAGNVFEGA
Ga0173482_105833171	3300019361	Soil	IKSTLPTYGLCRRQIMFPLTPPKQMTFLISVVLAVVAIVLRYLAYKGVPSIFPAKGFLLLLIAYLVLVAGNLVEGA
Ga0206352_113094331	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	MFPLTPPKQLTFLISVALAIAAVVVRYLVYTGVHMPPAFPTGGFLLLLVAYLVLVVGNLIEGA
Ga0206350_113539812	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	MFPLTPPKQLTFLISVALAIAAVVVRYLVYAGVQMPPAFPTGGFLLLLVAYLVLVVGNLIEGA
Ga0206350_113797261	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	PDTPKQLTFLISVVLAIAAVVVRYLVYTGVQLPPLFPARGFLLLLIAYLVLVAGNVLEGA
Ga0206353_102558431	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MFPLTPPKQLTFLISVALAIAAVVVRYLVYTGVQMPPAFPTGGFLLLLVAYLVLVVGNLIEGA
Ga0247785_10525521	3300022889	Soil	QLTFLISVALAIAAVVVRYVVYTGVQMPPAFPTGGFLLLLVAYLVLVVGNLIEGA
Ga0209976_107065681	3300024265	Deep Subsurface	MLPLSPPTQLIFLISVVLAIVAVVARYLAYTGVQMPFFPTGGFLLLLIAYLVLVAGNLFKGM
Ga0209109_102901791	3300025160	Soil	MFPLTPPKQVTFIISVVLAIAAVVIRYLVYTGVQMPPFFPTGGFLMLLIAYLVLAAGNLFRDA
Ga0209431_101458034	3300025313	Soil	MPFRLTPPTQLTFIISVALAILAVVARVLVYMDIEMPVFPTGGFLLLLIGYLVLLAGNLLEGM
Ga0209341_107092082	3300025325	Soil	VAETTAGAKITLPIRGSCKGFDTMQLTPPKQMTFFISVALAVIAVVVRFMAYQGMQMPFFPTGGFLILLVGYLVLLAGNLFEGA
Ga0209751_101224592	3300025327	Soil	MPFRLTPPTQLTFIISVALAILAVVARVLVYMDIEMPVFPTGGVLLLLIGYLVLLAGNLLEGM
Ga0209751_106573971	3300025327	Soil	MPLTPPKQVTLLISVALAVIAVVVRSLVYMNVETPITFPTGGFLLLLIGYLVLLAGNLFEQV
Ga0207642_102811352	3300025899	Miscanthus Rhizosphere	MFPLTPPKQLTFLISVALAIAAVVVRYVVYTGVQMPPAFPTGGFLLLLVAYLVLVFGNLIEGA
Ga0207662_107759452	3300025918	Switchgrass Rhizosphere	MFPLTPPKQLTLLISVALAIAAVVVRYLVYTGVQMPPAFPTGGFLLLLVAYLVLVVGNLIEGA
Ga0207690_100545917	3300025932	Corn Rhizosphere	MFPLTPPKQLTFLISVALAIAAVVVRYLVYTGVQMPPAFPTGGFLLLLVAYLVL
Ga0207691_100469504	3300025940	Miscanthus Rhizosphere	MCTFPLTPPKQLTLLISVALAIAAVVVRYLVYTGVQMPPAFPTGGFLLLLVAYLVLVVGNLIEGA
Ga0207674_104711121	3300026116	Corn Rhizosphere	MFPLTPPKQLTFLISVALAIAAVVVRYLVYTGVHMPPAFPTGGFLLLLVAYLVLVV
Ga0209887_11013652	3300027561	Groundwater Sand	MFPLTPPKQLTFLISVVLAIAAVVIRYLVYTGVQMPPAFPTGGFLLLLVAYLVLVAGNLFEGA
Ga0209073_103733912	3300027765	Agricultural Soil	MFPLTPPKQMTFLISVVLAVAAIVLRYLAYKGVELPSIFPAKGFLLLLIAYLVLVAGNLVEGA
Ga0299907_111048132	3300030006	Soil	MLRLTPPKQMTFLISVVLAVIAVVARLLIYMDVEMPITFPTGGFLILLFGYLVLLAGNVLDNV
Ga0299914_110629342	3300031228	Soil	MLRLTPPKQMTFLISVVLAVIAVVARSLIYVDVEMPITFPTGGFLLLLFGYLVLLAGNVLDNV
Ga0299913_105082662	3300031229	Soil	MFTLTPPKQLTFLISVALALAAVVIRYLIYTGVEMPPAFPTGGFLLLLIAYLVLVAGNLFEGA
Ga0214473_100903764	3300031949	Soil	VAETTAGAKIALPIRGSCKGFDTMQLTPPKQMTFFISVALAVIAVVVRFMAYQGMQMPFFPTGGFLILLVGYLVLLAGNLFEGA
Ga0214473_121948811	3300031949	Soil	MRLTPPGQMTFFISVALAVIAVVIRLLVYQGVQMPIFPTGGFLILLIGYLVLLAGNLFEG
Ga0306924_119116491	3300032076	Soil	QGGQMMAALTPPKQVTLSISVVLAVAAVMVRVLAYTGVQVPAVFPAKGFLLLLLAYLVLVAGILFKDV
Ga0307471_1005461751	3300032180	Hardwood Forest Soil	MQITPPKQMTLLISAALVVVAVVVRFLAYKGTQMPFFPAEGFLLLLVGYLVLLAGNLFEG
Ga0307472_1017459901	3300032205	Hardwood Forest Soil	GGKSMFPLTPPKQLTLLISVALAIAAVVVRYLVYTGVQMPPAFPTGGFLLLLVAYLVLVVGDLIEGA
Ga0306920_1003962922	3300032261	Soil	MPALTPPKQLTFSSSVVLAAAAIMVRFLAYTGHMPSVFPTGGFLLLLVAYLVLVAGILFKDV
Ga0214472_109143691	3300033407	Soil	PIRGSCKGFDTMQLTPPKQMTFFISVALAVIAVVVRFMAYQGMQMPFFPTGGFLILLVGYLVLLAGNLFEGA
Ga0310810_104403371	3300033412	Soil	MFPLTPPKQLTFLISVVLAVAAVVVRYLVYTGVQLPPLFPAGGFLLLLIAYLVLVAGNVLEGA

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090810

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign