Basic Information | |
---|---|
Family ID | F090797 |
Family Type | Metagenome |
Number of Sequences | 108 |
Average Sequence Length | 45 residues |
Representative Sequence | QVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD |
Number of Associated Samples | 85 |
Number of Associated Scaffolds | 108 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 1.85 % |
% of genes near scaffold ends (potentially truncated) | 97.22 % |
% of genes from short scaffolds (< 2000 bps) | 95.37 % |
Associated GOLD sequencing projects | 80 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Bacteria (90.741 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.704 % of family members) |
Environment Ontology (ENVO) | Unclassified (35.185 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (50.000 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70 |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 34.88% Coil/Unstructured: 65.12% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Bog Freshwater Sediment Soil Soil Vadose Zone Soil Tropical Forest Soil Surface Soil Peatlands Soil Grass Soil Soil Soil Hardwood Forest Soil Soil Tropical Peatland Tropical Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Agricultural Soil Corn Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Populus Rhizosphere |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
N55_00839240 | 2189573000 | Grass Soil | GSRSRSGRPVLRRGRGPSLASRRGIDAWRNVGDTSAQCLWVLRD |
Ga0066388_1014171862 | 3300005332 | Tropical Forest Soil | LVGVVNGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD* |
Ga0066388_1029902051 | 3300005332 | Tropical Forest Soil | SSGRPVLRRGETLLASRRGIDGWRNMGESDAQCLWVLRD* |
Ga0066388_1084561632 | 3300005332 | Tropical Forest Soil | LVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGESDAQCLWVLRD* |
Ga0070714_1006863101 | 3300005435 | Agricultural Soil | VQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD* |
Ga0070714_1012910461 | 3300005435 | Agricultural Soil | KGAELVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD* |
Ga0070713_1011626501 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | GAELVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD* |
Ga0070698_1015607261 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | LLGSGRPVLRRGETLLAGRRGIDAWRNVGESDAQCLWVLRD* |
Ga0070733_110504822 | 3300005541 | Surface Soil | QVLLSSGRPVLRRGETLLASRRGIDGWRNVGEGDAQCLWVLRD* |
Ga0068866_113789601 | 3300005718 | Miscanthus Rhizosphere | PFAHKGAELVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD |
Ga0066903_1015860082 | 3300005764 | Tropical Forest Soil | VLRRGETLLASRRGIDGWRNMGESDAQCLWVLRD* |
Ga0066903_1015862761 | 3300005764 | Tropical Forest Soil | SGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD* |
Ga0066903_1061955812 | 3300005764 | Tropical Forest Soil | GRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD* |
Ga0070716_1003498741 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | PVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD* |
Ga0070712_1001065881 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | QVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWILRD* |
Ga0075434_1014137861 | 3300006871 | Populus Rhizosphere | PVLRRGETLLASRRGIDAWRNVGDTGAQCLWVLRD* |
Ga0075418_112015301 | 3300009100 | Populus Rhizosphere | ILRRGETLLASRRGINGWRNMGESEAQCLWVLRD* |
Ga0116224_103307831 | 3300009683 | Peatlands Soil | LIQVLLSSGRPVLRRGETLLASRRGINGWRNVGEGDAQCLWVLRD* |
Ga0116216_107652131 | 3300009698 | Peatlands Soil | AELVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNVGEGDAQCLWVLRD* |
Ga0126384_103283991 | 3300010046 | Tropical Forest Soil | VLRRGETLLASRRGIDGWRNVGDTEAQCLWVLRD* |
Ga0126384_116903921 | 3300010046 | Tropical Forest Soil | APVGVVNRLVQGLAGCGRPVLRRGETLLASRRGVEGWRNVGETDAQCLWVLRD* |
Ga0126382_121327382 | 3300010047 | Tropical Forest Soil | LASGRPVLRRGETLLASRRGIDAWRNVGDTGAQCLWVLRD* |
Ga0126373_126460021 | 3300010048 | Tropical Forest Soil | IQVLLTSGRPILRRGETLLASLRGIDGWRNMGEGDAQCLWVLRD* |
Ga0126373_127164491 | 3300010048 | Tropical Forest Soil | QVLLSSGRPVLRRGETLLASRRGIDGWRNMGESDAQCLWVLRD* |
Ga0126376_105367122 | 3300010359 | Tropical Forest Soil | ELVGVVNGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD* |
Ga0126376_106303351 | 3300010359 | Tropical Forest Soil | SGRPVLRRGETLLASRRGIDAWRNVGDTSAQCIWVLRD* |
Ga0126376_111511171 | 3300010359 | Tropical Forest Soil | QVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD* |
Ga0126372_108522542 | 3300010360 | Tropical Forest Soil | SSGRPVLRRGETLLASRRGIDGWRNVGEGDAQCLWVLRD* |
Ga0126372_124996811 | 3300010360 | Tropical Forest Soil | GRPVLRRGETLLASRRGIDAWRNVGDTSAQCLWVLRD* |
Ga0126372_133183132 | 3300010360 | Tropical Forest Soil | GLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD* |
Ga0126377_135928662 | 3300010362 | Tropical Forest Soil | ASGRPVLRRGETLLASRRGIDAWRNVGDTSAQCIWVLRD* |
Ga0126379_109087452 | 3300010366 | Tropical Forest Soil | VQVLLSSGRPVLRRGETLLASRRGINGWRNMGEGDAQCLWVLRD* |
Ga0126379_133960432 | 3300010366 | Tropical Forest Soil | GLVQVQVGSGRPVLRRGETLLASRRAIDAWRNVGDTEAQCLWVLRD* |
Ga0126381_1021435712 | 3300010376 | Tropical Forest Soil | GAELVGVVNGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD* |
Ga0126381_1042817022 | 3300010376 | Tropical Forest Soil | LLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWILRD* |
Ga0136449_1013487733 | 3300010379 | Peatlands Soil | VPFAHKGAELVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNVGEGDAQCLWVLRD* |
Ga0137392_109980342 | 3300011269 | Vadose Zone Soil | IQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD* |
Ga0137404_104693331 | 3300012929 | Vadose Zone Soil | AELVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD* |
Ga0126369_129441311 | 3300012971 | Tropical Forest Soil | QVMLASGRPVLRRGETLLASRRGIDAWRNVGDTSAQCLWVLRD* |
Ga0163162_130982012 | 3300013306 | Switchgrass Rhizosphere | GVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD* |
Ga0181538_105207061 | 3300014162 | Bog | VVNGLVQVLLSSGRPVLRRGETLLASRRGIDAWRNVGDSSAQCLWVLRD* |
Ga0137411_10570581 | 3300015052 | Vadose Zone Soil | VVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD* |
Ga0182036_100766693 | 3300016270 | Soil | GLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWILRD |
Ga0182033_100426815 | 3300016319 | Soil | LVQVLLGSGRPVLRRGETLLATRRGIDGWRNVGESEAQCLWVLRD |
Ga0182033_101227681 | 3300016319 | Soil | SGLVKVLLSSGRPVLRRGGALLASRRGIDGWRNMGEGDAQCLWVLRD |
Ga0182040_115622301 | 3300016387 | Soil | GRPVLRRGETLLASRRGIDAWRNVGDTSAQCLWVLRD |
Ga0187814_101135002 | 3300017932 | Freshwater Sediment | VVIGSGRPVLRRGETLLATRRGIDGWRNAGDGDAQCIWVLRD |
Ga0187814_103204981 | 3300017932 | Freshwater Sediment | RPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD |
Ga0187783_102403802 | 3300017970 | Tropical Peatland | GLIQVLLSSGRPVLRRGETLLASRRGIDGWRNVGEIDAQCLWILRD |
Ga0210404_102109231 | 3300021088 | Soil | HKGAELVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD |
Ga0210386_105191211 | 3300021406 | Soil | AHKGAELVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD |
Ga0210384_102025074 | 3300021432 | Soil | LLSSGRPVRRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD |
Ga0210410_102080763 | 3300021479 | Soil | IQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD |
Ga0126371_102658304 | 3300021560 | Tropical Forest Soil | GLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD |
Ga0126371_105795872 | 3300021560 | Tropical Forest Soil | LLSSGRPVLRRGETLLASRRGIDGWRNMGESDAQCLWILRD |
Ga0126371_112811793 | 3300021560 | Tropical Forest Soil | GRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD |
Ga0247664_11094281 | 3300024232 | Soil | SGLIQVLLSSGRPILRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD |
Ga0207692_100822322 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | AVIGPPVLRRGETLLASRRGIDGWRNMGEGDAQCLWILRD |
Ga0207692_101025834 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | QVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD |
Ga0207692_109041281 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | VGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD |
Ga0207685_101455892 | 3300025905 | Corn, Switchgrass And Miscanthus Rhizosphere | RPVLRSGETLLASRRGIDGWRNMGEGDAQCLWILRD |
Ga0207684_100111747 | 3300025910 | Corn, Switchgrass And Miscanthus Rhizosphere | QVLVGSGRPVLRRGETLLASRRGIDAWRNVGDSDAQCLWVLRD |
Ga0207693_101398691 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | SGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD |
Ga0207663_109727941 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | SGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD |
Ga0207667_103621903 | 3300025949 | Corn Rhizosphere | VLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD |
Ga0209180_103330012 | 3300027846 | Vadose Zone Soil | GSGRPVLRRGETLLASRRGIDGWRNVGETEAQCLWVLRD |
Ga0209579_106749171 | 3300027869 | Surface Soil | KGTELVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNVGEGDAQCLWVLRD |
Ga0209275_107795411 | 3300027884 | Soil | GVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD |
Ga0307308_102008452 | 3300028884 | Soil | VQVVLGSGRPVLRRGETLLASRRGIDAWRNVGESDAQCLWVLRD |
Ga0310037_101995112 | 3300030494 | Peatlands Soil | LSSGRPVLRRGETLLASRRGINGWRNVGEGDAQCLWVLRD |
Ga0268241_101717332 | 3300030511 | Soil | GVELVAVVGGLVQVLLESGRPVLRRGETLLAERTAVLGWRNVGESEATLFWILRDD |
Ga0318571_101117782 | 3300031549 | Soil | VNGLVQVLLGSGRPVLRRGETLLASRRGIDGWRNVGDADAQCIWVLRD |
Ga0318571_103820651 | 3300031549 | Soil | SSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD |
Ga0318573_104479771 | 3300031564 | Soil | GRPVLRSGETLLASRRGIDGWRNMGEGDAQCLWILRD |
Ga0318542_105682992 | 3300031668 | Soil | QVLLSSGRPVLRSGETLLASRRGIDGWRNMGEGDAQCLWVLRD |
Ga0318561_100866461 | 3300031679 | Soil | TELVGVVNGLVQILLSSGRPVLRRGETLLASRRGIDGWRNVGDTDAQCIWVLRD |
Ga0318561_107642992 | 3300031679 | Soil | QVLLSSGRPVLRSGETLLASRRGIDGWRNMGDGDAQCLWVLRD |
Ga0318574_102451872 | 3300031680 | Soil | AHKGTELVGVVNGLVQVLLGSGRPVLRRGETLLASRRGIDGWRNVGDADAQCIWVLRD |
Ga0318572_109805591 | 3300031681 | Soil | GRPVLRRGETLLASRRGIDGWRNVGESDAQCLWVLRD |
Ga0318560_108257351 | 3300031682 | Soil | AELVGVVNGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD |
Ga0310686_1011213432 | 3300031708 | Soil | VLLSSGRPVLRRGETLLASRRGIDGWRNAGEGDAQCLWVLRD |
Ga0318493_105073921 | 3300031723 | Soil | PVLRRGETLLASRRGIDGWRNVGESDAQCLWVLRD |
Ga0318500_102795561 | 3300031724 | Soil | AHKGAELVGVVNGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD |
Ga0318501_105349901 | 3300031736 | Soil | LLSSGRPVLRSGETLLASRRGIDGWRNMGEGDAQCLWILRD |
Ga0306918_112503582 | 3300031744 | Soil | PVLRRGETLLASRRGIDAWRNVGDTSAQCLWVLRD |
Ga0318554_102553172 | 3300031765 | Soil | VEAPFAHKGAELVGVVNGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD |
Ga0318509_103353283 | 3300031768 | Soil | VLLSSGRPVLRSGETLLASRRGIDGWRNMGEGDAQCLWILRD |
Ga0318546_101950243 | 3300031771 | Soil | HKGTELVGVVNGLVQVLLGSGRPVLRRGETLLASRRGIDGWRNVGDADAQCIWVLRD |
Ga0318550_101056311 | 3300031797 | Soil | APFAHKGTELVGVVNGLVQVLLGSGRPVLRRGETLLASRRGIDGWRNVGDADAQCIWVLR |
Ga0318523_101109482 | 3300031798 | Soil | QVLLSSGRPVLRRGETHLASRRGIDGWRNMGEGDAQCLWVLRD |
Ga0318517_101022072 | 3300031835 | Soil | VVNGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD |
Ga0306925_103123961 | 3300031890 | Soil | PVLRSGETLLASRRGIDGWRNMGEGDAQCLWILRD |
Ga0318520_110710422 | 3300031897 | Soil | DGLYWGDNVQVVPGSGPPVLRRGETLLASPCGIDAWRIAGDTSAQCLRVLRD |
Ga0306923_104843871 | 3300031910 | Soil | PVLRSGETLLASRRGIDGWRNMGEGDAQCLWVLRD |
Ga0306921_121177582 | 3300031912 | Soil | VQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD |
Ga0310909_101603133 | 3300031947 | Soil | GLVQVIVGPGRPVLRRGETLLATRRGIDGWRNAGDSDAQCLWVLRD |
Ga0306926_112482522 | 3300031954 | Soil | EAPFAHKGAELVGVVNGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD |
Ga0306926_113696522 | 3300031954 | Soil | PVLRRGETLLASRRGIDGWRNVGDTDAQCIWVLRD |
Ga0318563_103263982 | 3300032009 | Soil | ILLSSGRPVLRRGERRAVSRRGIDGWRNVGDTDAQCIWVLRD |
Ga0318570_106017942 | 3300032054 | Soil | GVVNGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD |
Ga0318513_106882781 | 3300032065 | Soil | LVQVIVGPGRPVLRRGETLLATRRGIDGWRNAGDSDAQCLWVLRD |
Ga0318514_103138801 | 3300032066 | Soil | KGTELVGVVNGLVQVLLGSGRPVLRRGETLLASRRGIDGWRNVGDADAQCIWVLRD |
Ga0306924_102875503 | 3300032076 | Soil | ELVGVVNGLVQILLSSGRPVLRRGETLLASRRGIDGWRNVGDTDAQCIWVLRD |
Ga0318525_100316381 | 3300032089 | Soil | LVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD |
Ga0318525_103669971 | 3300032089 | Soil | RPVLRRGETLLASRRGIDGWRNVGDADAQCIWVLRD |
Ga0307470_106172971 | 3300032174 | Hardwood Forest Soil | RPVLRRGETLLASRRGIDGWRNMGDGDAQCLWVLRD |
Ga0306920_1022429351 | 3300032261 | Soil | VGPGRPVLRRGETLLATRRGIDGWRNAGDSDAQCLWVLRD |
Ga0335085_124522722 | 3300032770 | Soil | ASGRPVLRRGETLLASRRGIDGWRNVGDTSAQCLWVLRD |
⦗Top⦘ |