NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F090797

Metagenome Family F090797

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F090797
Family Type Metagenome
Number of Sequences 108
Average Sequence Length 45 residues
Representative Sequence QVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Number of Associated Samples 85
Number of Associated Scaffolds 108

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 1.85 %
% of genes near scaffold ends (potentially truncated) 97.22 %
% of genes from short scaffolds (< 2000 bps) 95.37 %
Associated GOLD sequencing projects 80
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (90.741 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(28.704 % of family members)
Environment Ontology (ENVO) Unclassified
(35.185 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(50.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70
1N55_00839240
2Ga0066388_1014171862
3Ga0066388_1029902051
4Ga0066388_1084561632
5Ga0070714_1006863101
6Ga0070714_1012910461
7Ga0070713_1011626501
8Ga0070698_1015607261
9Ga0070733_110504822
10Ga0068866_113789601
11Ga0066903_1015860082
12Ga0066903_1015862761
13Ga0066903_1061955812
14Ga0070716_1003498741
15Ga0070712_1001065881
16Ga0075434_1014137861
17Ga0075418_112015301
18Ga0116224_103307831
19Ga0116216_107652131
20Ga0126384_103283991
21Ga0126384_116903921
22Ga0126382_121327382
23Ga0126373_126460021
24Ga0126373_127164491
25Ga0126376_105367122
26Ga0126376_106303351
27Ga0126376_111511171
28Ga0126372_108522542
29Ga0126372_124996811
30Ga0126372_133183132
31Ga0126377_135928662
32Ga0126379_109087452
33Ga0126379_133960432
34Ga0126381_1021435712
35Ga0126381_1042817022
36Ga0136449_1013487733
37Ga0137392_109980342
38Ga0137404_104693331
39Ga0126369_129441311
40Ga0163162_130982012
41Ga0181538_105207061
42Ga0137411_10570581
43Ga0182036_100766693
44Ga0182033_100426815
45Ga0182033_101227681
46Ga0182040_115622301
47Ga0187814_101135002
48Ga0187814_103204981
49Ga0187783_102403802
50Ga0210404_102109231
51Ga0210386_105191211
52Ga0210384_102025074
53Ga0210410_102080763
54Ga0126371_102658304
55Ga0126371_105795872
56Ga0126371_112811793
57Ga0247664_11094281
58Ga0207692_100822322
59Ga0207692_101025834
60Ga0207692_109041281
61Ga0207685_101455892
62Ga0207684_100111747
63Ga0207693_101398691
64Ga0207663_109727941
65Ga0207667_103621903
66Ga0209180_103330012
67Ga0209579_106749171
68Ga0209275_107795411
69Ga0307308_102008452
70Ga0310037_101995112
71Ga0268241_101717332
72Ga0318571_101117782
73Ga0318571_103820651
74Ga0318573_104479771
75Ga0318542_105682992
76Ga0318561_100866461
77Ga0318561_107642992
78Ga0318574_102451872
79Ga0318572_109805591
80Ga0318560_108257351
81Ga0310686_1011213432
82Ga0318493_105073921
83Ga0318500_102795561
84Ga0318501_105349901
85Ga0306918_112503582
86Ga0318554_102553172
87Ga0318509_103353283
88Ga0318546_101950243
89Ga0318550_101056311
90Ga0318523_101109482
91Ga0318517_101022072
92Ga0306925_103123961
93Ga0318520_110710422
94Ga0306923_104843871
95Ga0306921_121177582
96Ga0310909_101603133
97Ga0306926_112482522
98Ga0306926_113696522
99Ga0318563_103263982
100Ga0318570_106017942
101Ga0318513_106882781
102Ga0318514_103138801
103Ga0306924_102875503
104Ga0318525_100316381
105Ga0318525_103669971
106Ga0307470_106172971
107Ga0306920_1022429351
108Ga0335085_124522722
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 34.88%    Coil/Unstructured: 65.12%
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Variant

510152025303540QVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRDSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
90.7%9.3%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Bog
Freshwater Sediment
Soil
Soil
Vadose Zone Soil
Tropical Forest Soil
Surface Soil
Peatlands Soil
Grass Soil
Soil
Soil
Hardwood Forest Soil
Soil
Tropical Peatland
Tropical Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Agricultural Soil
Corn Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Populus Rhizosphere
3.7%18.5%3.7%28.7%11.1%5.6%10.2%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
N55_008392402189573000Grass SoilGSRSRSGRPVLRRGRGPSLASRRGIDAWRNVGDTSAQCLWVLRD
Ga0066388_10141718623300005332Tropical Forest SoilLVGVVNGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0066388_10299020513300005332Tropical Forest SoilSSGRPVLRRGETLLASRRGIDGWRNMGESDAQCLWVLRD*
Ga0066388_10845616323300005332Tropical Forest SoilLVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGESDAQCLWVLRD*
Ga0070714_10068631013300005435Agricultural SoilVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0070714_10129104613300005435Agricultural SoilKGAELVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0070713_10116265013300005436Corn, Switchgrass And Miscanthus RhizosphereGAELVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0070698_10156072613300005471Corn, Switchgrass And Miscanthus RhizosphereLLGSGRPVLRRGETLLAGRRGIDAWRNVGESDAQCLWVLRD*
Ga0070733_1105048223300005541Surface SoilQVLLSSGRPVLRRGETLLASRRGIDGWRNVGEGDAQCLWVLRD*
Ga0068866_1137896013300005718Miscanthus RhizospherePFAHKGAELVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0066903_10158600823300005764Tropical Forest SoilVLRRGETLLASRRGIDGWRNMGESDAQCLWVLRD*
Ga0066903_10158627613300005764Tropical Forest SoilSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0066903_10619558123300005764Tropical Forest SoilGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0070716_10034987413300006173Corn, Switchgrass And Miscanthus RhizospherePVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0070712_10010658813300006175Corn, Switchgrass And Miscanthus RhizosphereQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWILRD*
Ga0075434_10141378613300006871Populus RhizospherePVLRRGETLLASRRGIDAWRNVGDTGAQCLWVLRD*
Ga0075418_1120153013300009100Populus RhizosphereILRRGETLLASRRGINGWRNMGESEAQCLWVLRD*
Ga0116224_1033078313300009683Peatlands SoilLIQVLLSSGRPVLRRGETLLASRRGINGWRNVGEGDAQCLWVLRD*
Ga0116216_1076521313300009698Peatlands SoilAELVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNVGEGDAQCLWVLRD*
Ga0126384_1032839913300010046Tropical Forest SoilVLRRGETLLASRRGIDGWRNVGDTEAQCLWVLRD*
Ga0126384_1169039213300010046Tropical Forest SoilAPVGVVNRLVQGLAGCGRPVLRRGETLLASRRGVEGWRNVGETDAQCLWVLRD*
Ga0126382_1213273823300010047Tropical Forest SoilLASGRPVLRRGETLLASRRGIDAWRNVGDTGAQCLWVLRD*
Ga0126373_1264600213300010048Tropical Forest SoilIQVLLTSGRPILRRGETLLASLRGIDGWRNMGEGDAQCLWVLRD*
Ga0126373_1271644913300010048Tropical Forest SoilQVLLSSGRPVLRRGETLLASRRGIDGWRNMGESDAQCLWVLRD*
Ga0126376_1053671223300010359Tropical Forest SoilELVGVVNGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0126376_1063033513300010359Tropical Forest SoilSGRPVLRRGETLLASRRGIDAWRNVGDTSAQCIWVLRD*
Ga0126376_1115111713300010359Tropical Forest SoilQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0126372_1085225423300010360Tropical Forest SoilSSGRPVLRRGETLLASRRGIDGWRNVGEGDAQCLWVLRD*
Ga0126372_1249968113300010360Tropical Forest SoilGRPVLRRGETLLASRRGIDAWRNVGDTSAQCLWVLRD*
Ga0126372_1331831323300010360Tropical Forest SoilGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0126377_1359286623300010362Tropical Forest SoilASGRPVLRRGETLLASRRGIDAWRNVGDTSAQCIWVLRD*
Ga0126379_1090874523300010366Tropical Forest SoilVQVLLSSGRPVLRRGETLLASRRGINGWRNMGEGDAQCLWVLRD*
Ga0126379_1339604323300010366Tropical Forest SoilGLVQVQVGSGRPVLRRGETLLASRRAIDAWRNVGDTEAQCLWVLRD*
Ga0126381_10214357123300010376Tropical Forest SoilGAELVGVVNGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0126381_10428170223300010376Tropical Forest SoilLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWILRD*
Ga0136449_10134877333300010379Peatlands SoilVPFAHKGAELVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNVGEGDAQCLWVLRD*
Ga0137392_1099803423300011269Vadose Zone SoilIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0137404_1046933313300012929Vadose Zone SoilAELVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0126369_1294413113300012971Tropical Forest SoilQVMLASGRPVLRRGETLLASRRGIDAWRNVGDTSAQCLWVLRD*
Ga0163162_1309820123300013306Switchgrass RhizosphereGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0181538_1052070613300014162BogVVNGLVQVLLSSGRPVLRRGETLLASRRGIDAWRNVGDSSAQCLWVLRD*
Ga0137411_105705813300015052Vadose Zone SoilVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0182036_1007666933300016270SoilGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWILRD
Ga0182033_1004268153300016319SoilLVQVLLGSGRPVLRRGETLLATRRGIDGWRNVGESEAQCLWVLRD
Ga0182033_1012276813300016319SoilSGLVKVLLSSGRPVLRRGGALLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0182040_1156223013300016387SoilGRPVLRRGETLLASRRGIDAWRNVGDTSAQCLWVLRD
Ga0187814_1011350023300017932Freshwater SedimentVVIGSGRPVLRRGETLLATRRGIDGWRNAGDGDAQCIWVLRD
Ga0187814_1032049813300017932Freshwater SedimentRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0187783_1024038023300017970Tropical PeatlandGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNVGEIDAQCLWILRD
Ga0210404_1021092313300021088SoilHKGAELVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0210386_1051912113300021406SoilAHKGAELVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0210384_1020250743300021432SoilLLSSGRPVRRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0210410_1020807633300021479SoilIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0126371_1026583043300021560Tropical Forest SoilGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0126371_1057958723300021560Tropical Forest SoilLLSSGRPVLRRGETLLASRRGIDGWRNMGESDAQCLWILRD
Ga0126371_1128117933300021560Tropical Forest SoilGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0247664_110942813300024232SoilSGLIQVLLSSGRPILRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0207692_1008223223300025898Corn, Switchgrass And Miscanthus RhizosphereAVIGPPVLRRGETLLASRRGIDGWRNMGEGDAQCLWILRD
Ga0207692_1010258343300025898Corn, Switchgrass And Miscanthus RhizosphereQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0207692_1090412813300025898Corn, Switchgrass And Miscanthus RhizosphereVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0207685_1014558923300025905Corn, Switchgrass And Miscanthus RhizosphereRPVLRSGETLLASRRGIDGWRNMGEGDAQCLWILRD
Ga0207684_1001117473300025910Corn, Switchgrass And Miscanthus RhizosphereQVLVGSGRPVLRRGETLLASRRGIDAWRNVGDSDAQCLWVLRD
Ga0207693_1013986913300025915Corn, Switchgrass And Miscanthus RhizosphereSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0207663_1097279413300025916Corn, Switchgrass And Miscanthus RhizosphereSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0207667_1036219033300025949Corn RhizosphereVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0209180_1033300123300027846Vadose Zone SoilGSGRPVLRRGETLLASRRGIDGWRNVGETEAQCLWVLRD
Ga0209579_1067491713300027869Surface SoilKGTELVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNVGEGDAQCLWVLRD
Ga0209275_1077954113300027884SoilGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0307308_1020084523300028884SoilVQVVLGSGRPVLRRGETLLASRRGIDAWRNVGESDAQCLWVLRD
Ga0310037_1019951123300030494Peatlands SoilLSSGRPVLRRGETLLASRRGINGWRNVGEGDAQCLWVLRD
Ga0268241_1017173323300030511SoilGVELVAVVGGLVQVLLESGRPVLRRGETLLAERTAVLGWRNVGESEATLFWILRDD
Ga0318571_1011177823300031549SoilVNGLVQVLLGSGRPVLRRGETLLASRRGIDGWRNVGDADAQCIWVLRD
Ga0318571_1038206513300031549SoilSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0318573_1044797713300031564SoilGRPVLRSGETLLASRRGIDGWRNMGEGDAQCLWILRD
Ga0318542_1056829923300031668SoilQVLLSSGRPVLRSGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0318561_1008664613300031679SoilTELVGVVNGLVQILLSSGRPVLRRGETLLASRRGIDGWRNVGDTDAQCIWVLRD
Ga0318561_1076429923300031679SoilQVLLSSGRPVLRSGETLLASRRGIDGWRNMGDGDAQCLWVLRD
Ga0318574_1024518723300031680SoilAHKGTELVGVVNGLVQVLLGSGRPVLRRGETLLASRRGIDGWRNVGDADAQCIWVLRD
Ga0318572_1098055913300031681SoilGRPVLRRGETLLASRRGIDGWRNVGESDAQCLWVLRD
Ga0318560_1082573513300031682SoilAELVGVVNGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0310686_10112134323300031708SoilVLLSSGRPVLRRGETLLASRRGIDGWRNAGEGDAQCLWVLRD
Ga0318493_1050739213300031723SoilPVLRRGETLLASRRGIDGWRNVGESDAQCLWVLRD
Ga0318500_1027955613300031724SoilAHKGAELVGVVNGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0318501_1053499013300031736SoilLLSSGRPVLRSGETLLASRRGIDGWRNMGEGDAQCLWILRD
Ga0306918_1125035823300031744SoilPVLRRGETLLASRRGIDAWRNVGDTSAQCLWVLRD
Ga0318554_1025531723300031765SoilVEAPFAHKGAELVGVVNGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0318509_1033532833300031768SoilVLLSSGRPVLRSGETLLASRRGIDGWRNMGEGDAQCLWILRD
Ga0318546_1019502433300031771SoilHKGTELVGVVNGLVQVLLGSGRPVLRRGETLLASRRGIDGWRNVGDADAQCIWVLRD
Ga0318550_1010563113300031797SoilAPFAHKGTELVGVVNGLVQVLLGSGRPVLRRGETLLASRRGIDGWRNVGDADAQCIWVLR
Ga0318523_1011094823300031798SoilQVLLSSGRPVLRRGETHLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0318517_1010220723300031835SoilVVNGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0306925_1031239613300031890SoilPVLRSGETLLASRRGIDGWRNMGEGDAQCLWILRD
Ga0318520_1107104223300031897SoilDGLYWGDNVQVVPGSGPPVLRRGETLLASPCGIDAWRIAGDTSAQCLRVLRD
Ga0306923_1048438713300031910SoilPVLRSGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0306921_1211775823300031912SoilVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0310909_1016031333300031947SoilGLVQVIVGPGRPVLRRGETLLATRRGIDGWRNAGDSDAQCLWVLRD
Ga0306926_1124825223300031954SoilEAPFAHKGAELVGVVNGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0306926_1136965223300031954SoilPVLRRGETLLASRRGIDGWRNVGDTDAQCIWVLRD
Ga0318563_1032639823300032009SoilILLSSGRPVLRRGERRAVSRRGIDGWRNVGDTDAQCIWVLRD
Ga0318570_1060179423300032054SoilGVVNGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0318513_1068827813300032065SoilLVQVIVGPGRPVLRRGETLLATRRGIDGWRNAGDSDAQCLWVLRD
Ga0318514_1031388013300032066SoilKGTELVGVVNGLVQVLLGSGRPVLRRGETLLASRRGIDGWRNVGDADAQCIWVLRD
Ga0306924_1028755033300032076SoilELVGVVNGLVQILLSSGRPVLRRGETLLASRRGIDGWRNVGDTDAQCIWVLRD
Ga0318525_1003163813300032089SoilLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0318525_1036699713300032089SoilRPVLRRGETLLASRRGIDGWRNVGDADAQCIWVLRD
Ga0307470_1061729713300032174Hardwood Forest SoilRPVLRRGETLLASRRGIDGWRNMGDGDAQCLWVLRD
Ga0306920_10224293513300032261SoilVGPGRPVLRRGETLLATRRGIDGWRNAGDSDAQCLWVLRD
Ga0335085_1245227223300032770SoilASGRPVLRRGETLLASRRGIDGWRNVGDTSAQCLWVLRD


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