Metagenome Family F090787

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090787
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	68 residues
Representative Sequence	MYSLIWQSVMWRPGKLRFLIGVKNPLPIRPTATARKHGPLRGPADRQIRDFSRATPSFRHASGDTFSS
Number of Associated Samples	96
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	60.75 %
% of genes near scaffold ends (potentially truncated)	37.96 %
% of genes from short scaffolds (< 2000 bps)	75.93 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.17

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.889 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (26.852 % of family members)
Environment Ontology (ENVO)	Unclassified (25.926 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.75% β-sheet: 0.00% Coil/Unstructured: 81.25%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.17
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.17
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00665	rve	29.63
PF01695	IstB_IS21	9.26
PF02371	Transposase_20	1.85
PF01548	DEDD_Tnp_IS110	1.85
PF13148	DUF3987	0.93
PF13419	HAD_2	0.93
PF07690	MFS_1	0.93
PF02738	MoCoBD_1	0.93
PF13361	UvrD_C	0.93
PF00528	BPD_transp_1	0.93
PF06685	DUF1186	0.93
PF04115	Ureidogly_lyase	0.93
PF16983	MFS_MOT1	0.93
PF00211	Guanylate_cyc	0.93
PF03237	Terminase_6N	0.93
PF13518	HTH_28	0.93
PF13570	PQQ_3	0.93
PF00078	RVT_1	0.93
PF13847	Methyltransf_31	0.93
PF04392	ABC_sub_bind	0.93
PF14294	DUF4372	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	29.63
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	29.63
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	29.63
COG4584	Transposase	Mobilome: prophages, transposons [X]	29.63
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	9.26
COG3547	Transposase	Mobilome: prophages, transposons [X]	3.70
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.93
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.93
COG3194	Ureidoglycolate hydrolase (allantoin degradation)	Nucleotide transport and metabolism [F]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.89 %
Unclassified	root	N/A	11.11 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.89 %
Unclassified	root	N/A	11.11 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.89 %
Unclassified	root	N/A	11.11 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	50.00 %
Unclassified	root	N/A	11.11 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.85 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	39.81 %
Unclassified	root	N/A	11.11 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.93 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	19.44 %
Unclassified	root	N/A	11.11 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	5.56 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.93 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.11 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.70 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	2.78 %
unclassified Dehalococcoidia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia	0.93 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.93 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.11 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.70 %
Gluconacetobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Gluconacetobacter	2.78 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.93 %
Nitratireductor	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Nitratireductor	0.93 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.11 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.70 %
Gluconacetobacter diazotrophicus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Gluconacetobacter → Gluconacetobacter diazotrophicus	2.78 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.93 %
Nitratireductor	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Nitratireductor	0.93 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100200001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1889	Open in IMG/M
3300005167\|Ga0066672_10259011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1121	Open in IMG/M
3300005175\|Ga0066673_10355822	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300005177\|Ga0066690_10087653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1980	Open in IMG/M
3300005332\|Ga0066388_100413360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1993	Open in IMG/M
3300005437\|Ga0070710_10074870	All Organisms → cellular organisms → Bacteria	1960	Open in IMG/M
3300005445\|Ga0070708_102245265	All Organisms → cellular organisms → Bacteria → Proteobacteria	504	Open in IMG/M
3300005451\|Ga0066681_10231362	Not Available	1116	Open in IMG/M
3300005518\|Ga0070699_101076114	Not Available	738	Open in IMG/M
3300005554\|Ga0066661_10198024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Nitratireductor	1243	Open in IMG/M
3300005561\|Ga0066699_10196827	All Organisms → cellular organisms → Bacteria	1402	Open in IMG/M
3300005569\|Ga0066705_10312248	All Organisms → cellular organisms → Bacteria	996	Open in IMG/M
3300005575\|Ga0066702_10026548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2907	Open in IMG/M
3300005578\|Ga0068854_100993428	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300005591\|Ga0070761_10046483	All Organisms → cellular organisms → Bacteria → Proteobacteria	2441	Open in IMG/M
3300005921\|Ga0070766_10925511	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300006031\|Ga0066651_10112392	All Organisms → cellular organisms → Bacteria	1386	Open in IMG/M
3300006031\|Ga0066651_10171035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1145	Open in IMG/M
3300006173\|Ga0070716_100672481	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300006176\|Ga0070765_100117266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2329	Open in IMG/M
3300006176\|Ga0070765_100288445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1514	Open in IMG/M
3300006796\|Ga0066665_10360626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1189	Open in IMG/M
3300006797\|Ga0066659_11412453	Not Available	581	Open in IMG/M
3300006804\|Ga0079221_11051013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	617	Open in IMG/M
3300006854\|Ga0075425_100215387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2209	Open in IMG/M
3300006904\|Ga0075424_100253732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1870	Open in IMG/M
3300007255\|Ga0099791_10089535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1409	Open in IMG/M
3300007258\|Ga0099793_10382964	All Organisms → cellular organisms → Bacteria → Proteobacteria	690	Open in IMG/M
3300007788\|Ga0099795_10008935	All Organisms → cellular organisms → Bacteria → Proteobacteria	2886	Open in IMG/M
3300009137\|Ga0066709_100648785	All Organisms → cellular organisms → Bacteria	1511	Open in IMG/M
3300009137\|Ga0066709_102481493	All Organisms → cellular organisms → Bacteria → Proteobacteria	700	Open in IMG/M
3300010343\|Ga0074044_10508640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	787	Open in IMG/M
3300010343\|Ga0074044_10998169	Not Available	548	Open in IMG/M
3300010376\|Ga0126381_100187157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2756	Open in IMG/M
3300010376\|Ga0126381_100576935	All Organisms → cellular organisms → Bacteria	1597	Open in IMG/M
3300011269\|Ga0137392_10720251	Not Available	826	Open in IMG/M
3300011270\|Ga0137391_10535264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	988	Open in IMG/M
3300012199\|Ga0137383_11347086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	507	Open in IMG/M
3300012202\|Ga0137363_10071186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2558	Open in IMG/M
3300012202\|Ga0137363_11162946	Not Available	656	Open in IMG/M
3300012205\|Ga0137362_10317690	All Organisms → cellular organisms → Bacteria	1348	Open in IMG/M
3300012207\|Ga0137381_10720186	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
3300012208\|Ga0137376_11714611	All Organisms → cellular organisms → Bacteria → Proteobacteria	519	Open in IMG/M
3300012211\|Ga0137377_11393229	All Organisms → cellular organisms → Bacteria → Proteobacteria	630	Open in IMG/M
3300012212\|Ga0150985_118115411	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300012351\|Ga0137386_10359588	All Organisms → cellular organisms → Bacteria	1048	Open in IMG/M
3300012359\|Ga0137385_11456414	Not Available	548	Open in IMG/M
3300012361\|Ga0137360_10818063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	802	Open in IMG/M
3300012361\|Ga0137360_11048601	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300012582\|Ga0137358_10029529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3589	Open in IMG/M
3300012582\|Ga0137358_10601105	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300012685\|Ga0137397_10871251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Gluconacetobacter → Gluconacetobacter diazotrophicus	668	Open in IMG/M
3300012917\|Ga0137395_11034132	Not Available	586	Open in IMG/M
3300012922\|Ga0137394_11106943	Not Available	656	Open in IMG/M
3300012929\|Ga0137404_10406777	All Organisms → cellular organisms → Bacteria	1201	Open in IMG/M
3300012930\|Ga0137407_12196776	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300012957\|Ga0164303_10354155	All Organisms → cellular organisms → Bacteria → Proteobacteria	888	Open in IMG/M
3300012971\|Ga0126369_10076282	All Organisms → cellular organisms → Bacteria	2958	Open in IMG/M
3300012987\|Ga0164307_10456263	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M
3300014657\|Ga0181522_10251664	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
3300015264\|Ga0137403_10689952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	882	Open in IMG/M
3300016371\|Ga0182034_10386637	All Organisms → cellular organisms → Bacteria	1145	Open in IMG/M
3300018433\|Ga0066667_11156093	All Organisms → cellular organisms → Bacteria → Proteobacteria	671	Open in IMG/M
3300018468\|Ga0066662_11608642	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300019789\|Ga0137408_1093290	All Organisms → cellular organisms → Bacteria	1776	Open in IMG/M
3300020140\|Ga0179590_1018759	All Organisms → cellular organisms → Bacteria	1603	Open in IMG/M
3300020579\|Ga0210407_10039520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3509	Open in IMG/M
3300020580\|Ga0210403_10109671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2241	Open in IMG/M
3300025915\|Ga0207693_10043598	All Organisms → cellular organisms → Bacteria → Proteobacteria	3528	Open in IMG/M
3300025981\|Ga0207640_10849317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Gluconacetobacter → Gluconacetobacter diazotrophicus	794	Open in IMG/M
3300026078\|Ga0207702_10744498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	967	Open in IMG/M
3300026498\|Ga0257156_1051211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	849	Open in IMG/M
3300026527\|Ga0209059_1180722	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300026551\|Ga0209648_10013666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7089	Open in IMG/M
3300026551\|Ga0209648_10041828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3959	Open in IMG/M
3300026552\|Ga0209577_10083683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2618	Open in IMG/M
3300026555\|Ga0179593_1118715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3036	Open in IMG/M
3300026555\|Ga0179593_1222781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2719	Open in IMG/M
3300026899\|Ga0209326_1000252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4285	Open in IMG/M
3300027049\|Ga0207806_1022165	Not Available	737	Open in IMG/M
3300027172\|Ga0208098_1001289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1720	Open in IMG/M
3300027603\|Ga0209331_1021805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1659	Open in IMG/M
3300027610\|Ga0209528_1039508	All Organisms → cellular organisms → Bacteria	1045	Open in IMG/M
3300027643\|Ga0209076_1015679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2008	Open in IMG/M
3300027663\|Ga0208990_1110074	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300027738\|Ga0208989_10028711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1923	Open in IMG/M
3300027855\|Ga0209693_10010553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4330	Open in IMG/M
3300027889\|Ga0209380_10070238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1999	Open in IMG/M
3300028047\|Ga0209526_10003958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	10093	Open in IMG/M
3300031546\|Ga0318538_10087826	All Organisms → cellular organisms → Bacteria	1588	Open in IMG/M
3300031561\|Ga0318528_10382770	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300031572\|Ga0318515_10054129	All Organisms → cellular organisms → Bacteria	2026	Open in IMG/M
3300031573\|Ga0310915_10067467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2350	Open in IMG/M
3300031640\|Ga0318555_10296650	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300031679\|Ga0318561_10073883	All Organisms → cellular organisms → Bacteria	1752	Open in IMG/M
3300031713\|Ga0318496_10244322	All Organisms → cellular organisms → Bacteria	989	Open in IMG/M
3300031719\|Ga0306917_10127170	All Organisms → cellular organisms → Bacteria	1865	Open in IMG/M
3300031744\|Ga0306918_10759643	All Organisms → cellular organisms → Bacteria → Proteobacteria	758	Open in IMG/M
3300031768\|Ga0318509_10049804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2130	Open in IMG/M
3300031820\|Ga0307473_11033268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Gluconacetobacter → Gluconacetobacter diazotrophicus	602	Open in IMG/M
3300031890\|Ga0306925_10319635	All Organisms → cellular organisms → Bacteria	1668	Open in IMG/M
3300031893\|Ga0318536_10189437	All Organisms → cellular organisms → Bacteria	1047	Open in IMG/M
3300031910\|Ga0306923_10112510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3081	Open in IMG/M
3300031910\|Ga0306923_10861272	Not Available	996	Open in IMG/M
3300031946\|Ga0310910_10223032	All Organisms → cellular organisms → Bacteria	1467	Open in IMG/M
3300031981\|Ga0318531_10278156	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300032205\|Ga0307472_102572834	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.44%
Host-Associated	Host-Associated	5.56%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.52%
Plants	Host-Associated → Plants	5.56%
Aquatic	Environmental → Aquatic	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.52%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.85%
Freshwater	Environmental → Aquatic → Freshwater	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.30%
Loam	Environmental → Terrestrial → Soil → Loam	20.37%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.78%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.85%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.37%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	18.52%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	14.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.78%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	26.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	12.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.41%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.56%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.56%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.63%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.85%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020140	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026899	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027049	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 72 (SPAdes)	Environmental	Open in IMG/M
3300027172	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF038 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1002000012	3300002245	Forest Soil	MYSLVWQSVMWRPGKLRFLIGVKNPLPIRPAATARKHGPLRGRAGRQIRDFSRATPSFRHEPGGTFSP*
Ga0066672_102590112	3300005167	Soil	MYSLIWQSVMWRPGKLWFLIGVKNPLPIRPAATASQRAPLRRCAGRQIRDFSRATPFFHHASGDTFSS*
Ga0066673_103558221	3300005175	Soil	MYSLVWQSVMWRPGKLRFLIGVKNPLPIRPAVTARKHGPLRGRAGRQIRDFSRATPSFRRASGDSFSS*
Ga0066690_100876531	3300005177	Soil	MWRPGKLRFLIGVKNPLPIRPAVTARKHGPLRGRAGRQIRDFSRATPSFRHASGDISHPDRRPFLI
Ga0066388_1004133602	3300005332	Tropical Forest Soil	MYSLIWQSVMWRPGKLRFLNGVKNSLPIRPTATARQRAPLRRARRRQIRSSSQATPFRHEPGGILILIDATPSS*
Ga0070710_100748701	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MYSLVWQSVMWRPGKLRFLIGVKNPLPIPPAATASQRAPLRSRAVRRIRHVSRATPAFRHEPGDTFSP*
Ga0070708_1022452651	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MYSLVWQSVMWRPGKLRFLIGVKNPLPIRPAATARKHGPLRGRAGRQIRDFRRTTPSFCRESDDTF
Ga0066681_102313621	3300005451	Soil	VMWRPGKLRFLIGVKTRFYPAGRDRQKHGPLRGRAGRQIRDFSRATPSFRHASGDT
Ga0070699_1010761141	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	QSVMWRPGKLRFLIGVKNPLPIRPTAIARKHGPLRGRAGRQIRDFSRATPAFRHAPGDTFSS*
Ga0066661_101980241	3300005554	Soil	SVMWRPGKLRFLIGVKNPLPIRPTATARKHGPLRGPADRQIRDFSRATPSFRHASGDTFSS*
Ga0066699_101968272	3300005561	Soil	MYSLIWQSVMWRPGKLRFLIGVKNPLPIRPTVTARKHGPLQGRADRQIRDSSRATPAFRHASGDTL
Ga0066705_103122482	3300005569	Soil	MYSLIWQSVMWRPGKLRFLIGVKNPLPIRPTVTARKHGPLQGRADRQIRDSSRATPAFRHASGDTLSHPD*
Ga0066702_100265485	3300005575	Soil	MYSLIWQSVMWRPGKLWFLIGVKNPLPIRPAATASQRAPLRRCAVRQIRDFSRATPFFHHASGDTFSS*
Ga0068854_1009934282	3300005578	Corn Rhizosphere	MYSLIWQSVTWRPGKLRFLIGVKNLLPIRPTAIARKHGPLRSLRRSSDSDFSRATPTFGRASDDSFSP*
Ga0070761_100464833	3300005591	Soil	MNSLIWQSVMWRPGKGRFLIGVKNPLPIRPAATASQRAPFQGRAVRRIRNVSRATPSCRHASGDSFSS*
Ga0070766_109255111	3300005921	Soil	MWQPGKRRFLIGVKNLLPIRPAATASQRAPLRGRAVHRIRNVTRATPSCRHASGDILIQIDAR
Ga0066651_101123922	3300006031	Soil	MYSLIWQSVMWRPGKLRFLIGVKNPLPIRPTATARKHEPLRGPADRQIRDFGRATPSFHHASGDTFSS*
Ga0066651_101710352	3300006031	Soil	MYSLVWQSVMWRPGKLRFLIGVKNPLPIRPAATARKHGPLRGRAGRQIRDFSRATPSFRRASGDSFSS*
Ga0070716_1006724812	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MYSLVWQSVMWRPGKLRFLIGVKNPLPIPPAATASQRAPLRRRAGRRIRHVSRATPAFRHEPGDTFSP*
Ga0070765_1001172663	3300006176	Soil	MYSLVWQSVMWRPGKLWFLIGVKNPLPIRPAATARKQGPLRGRAGRQIRDFSRATPSFRRASGDTFSS*
Ga0070765_1002884452	3300006176	Soil	MYSLVWQSVMWRPGKLRFLIGVKNPLPIRPAATARQRAPLRGRAVRQIRNFRRATPSFRHEPGDTFSS*
Ga0066665_103606261	3300006796	Soil	VLKALDDAGIVDNTFVMYSLVWQSVMWRPGKLWFLIGVKNPLPIRPAATARKHGPLRGRTGRQIRDFSRATPSLRHEPGDTFSP*
Ga0066659_114124531	3300006797	Soil	TLGVSAWRKLMYSLIWQSVMWRPGKLRFLIGVKNPLPIRPTVTARKHGPLQGRADRQIRDSSRATPFFRHASGDTLSHPD*
Ga0079221_110510132	3300006804	Agricultural Soil	MYSLIWQSVMWRPGKLRFLIGVKNPLPIRPTVTARKHGPLQGRADRQIRDSSRATPSFRHASGDTLSHPE*
Ga0075425_1002153873	3300006854	Populus Rhizosphere	MYSLVWQSVMWRPGKLRFLIGVKNPLPIRPAATARQRAPLRGRAVRQIRDFSRATPSFRHEPGDTFSS*
Ga0075424_1002537322	3300006904	Populus Rhizosphere	MYSLVWQSVMWRPGKLRFLIGVKNPLPIRPAATARQRAPLRGRAVRQIRDFSRATPSFRHEPGDTFSSCLSRSRLA*
Ga0099791_100895351	3300007255	Vadose Zone Soil	MYSLVWQSVMWRPGKLRFLIGVKNPLPIRLAATARKHSPLRGRAGRQIRDFRRATPSFRRESG
Ga0099793_103829642	3300007258	Vadose Zone Soil	MYSLVWQSVMWRPGKLRFLIGVKNPLPIRPAATARKHGPLRGRAGRQIRDFRRATPSFRRESGDTFSS*
Ga0099795_100089353	3300007788	Vadose Zone Soil	MYSLIWQSVMWRPGKLRFLIGVKNPLPIRPTVTARKHGPLQGRADRQIRDSSRATPSFRHASGDTLSHPD*
Ga0066709_1006487851	3300009137	Grasslands Soil	MYSLVWESVMWRPGKLRFLIDVKNPLPIRPTATARQRAPLRGRAVRQIRDFSRAPPSFRHEPGDTFSS*
Ga0066709_1024814931	3300009137	Grasslands Soil	MYILIGQSVMWRPGKMRFLIGVKNPLPIRPTAIARKHGPSRGHADRQIRDFSRATPSFRHASGDTFSS*
Ga0074044_105086401	3300010343	Bog Forest Soil	MYSLIWQSVMWRPGKLRFLIGVKNLLPIRPAATARQRAPSRRARRRRIRDFSRATPSFRHEPDGILILIDALPSS*
Ga0074044_109981691	3300010343	Bog Forest Soil	KLMYSLIWQSVMWRPGKLRFLIGVKNPLPIRPTVTARKHGPLQGRADRQIRDSSRATPSFRHASGDTLSHPD*
Ga0126381_1001871571	3300010376	Tropical Forest Soil	MYSLIWQSVMWRPDKMRFLIAMKNPLPIRTAATARQRAPSRRADRCRIRKPSHEPGSILILIDALLSS*
Ga0126381_1005769351	3300010376	Tropical Forest Soil	MYSLIWQSVMWQPGKLRFLNGVKNSLPIRPTATARQRAPLRRARRRQIRSSSQATPFRHEPGGILILIDATPSS*
Ga0137392_107202511	3300011269	Vadose Zone Soil	VWQSVMWRPGKLWFLIGVKNPLPIRPAATAGKQRPLRGRAVRQIRDFSRATPSFRHEPGDTFSP*
Ga0137391_105352642	3300011270	Vadose Zone Soil	MYSLIWQSVMWRPGKLRFLIGVKNPLPIRPAATAGKQRPLRGRAVRQIRDFSRATPSFRHEPGDTFSP*
Ga0137383_113470862	3300012199	Vadose Zone Soil	WRPGKLWFLIDVKNPLPIRPAATASQRAPLRRCAGRQIRDFSRATPSFHHASGDTFSS*
Ga0137363_100711863	3300012202	Vadose Zone Soil	MYSLVWQSVMWRPGKLRFLIGVKNPLPIRPAGTTRKHGPLRGRAGRQIRDFSRATPSFRRASGDSFSS*
Ga0137363_111629461	3300012202	Vadose Zone Soil	RKLMYSLVWQSVMWRPGKLRFLIGVKNPLPIRPAATARKHGPLRGRAGRQIRDFRRATPSFRRESGDTFSS*
Ga0137362_103176902	3300012205	Vadose Zone Soil	MYSLVWQSVMWRPGKLRFLIGVKNPLPIRPAATARKLRPLRGRADRQIRDFSRATPSFRHEPGDTFSP*
Ga0137381_107201861	3300012207	Vadose Zone Soil	MYSLIWQSVMWRPGKLWFLIDVKNPLPIRPAATASQRAPLRRCAGRQIRDFSRATPSFHHASGDTFSS*
Ga0137376_117146111	3300012208	Vadose Zone Soil	VGVSAWRKLMYDLIWQSVMWRPGKLQFLIGMKNPLPIRSTVTARQHGPLRGRAVHRIRNVSRATPSFRHASGDNHSS*
Ga0137377_113932291	3300012211	Vadose Zone Soil	MYSLIWQSVMWRPGKLQFLIGMKNPLPIRSTVTARQHGPLRGRAVHRIRNVSRATPSFRHASGDNHSS*
Ga0150985_1181154112	3300012212	Avena Fatua Rhizosphere	MYSLVWQSVMWRPGKLRFLIGVKNPLPIRPAATARKHRPLRGRTGRQIRDFRRATPSFRREPGDTFSS*
Ga0137386_103595882	3300012351	Vadose Zone Soil	MYSLVWQSVMWRPGKLRFLIGVKNPLPIRPAATASQRAPLRGRAGRRIRNVSRATPSFRHEPGDTFSS*
Ga0137385_114564141	3300012359	Vadose Zone Soil	KLRFLIGVKNPLPIRPAATARKHGPLRGRAGRQIRDFSRATPSFHHASGDTFSS*
Ga0137360_108180632	3300012361	Vadose Zone Soil	WRKLMYSLVWQSVMWRPGKLRFLIGVKNPLPIRPAATARKHGPLRGRAGRQIRDFRRATPSFRRESGDTFSS*
Ga0137360_110486012	3300012361	Vadose Zone Soil	VGVSAWRKLMYSLIWQSVMWRPGKLRFLIGVKNPLPIRPTVTARKHGPLQGRADRQIRDSSRATPSFRHASGDTLSHPD*
Ga0137358_100295292	3300012582	Vadose Zone Soil	MYNLIWQSVMWRPGKLRFLIGVKNPLPIRPAATARKHDPLRGRAGRQIRDFRRATPSFRRASGDTFSS*
Ga0137358_106011052	3300012582	Vadose Zone Soil	MYSLIWQSVIWRPGKLRFLIGVKNPLPIRPTVTARKHGPLQGRADRQIRDSSRATPSFRHASGDTLSHPD*
Ga0137397_108712511	3300012685	Vadose Zone Soil	MYSLVWQSVMWRPGKLWFLIGVKNPLPIRPAATARKHGPLRGRAGRQIRDFRRATPSFRRESGDTFSS*
Ga0137395_110341321	3300012917	Vadose Zone Soil	SLIWQSVMWRPGKLWFLIGVKNPLPIRPAGTARKHGPLRGRAGRQIRDFSRATPSFRRASGDTFSS*
Ga0137394_111069431	3300012922	Vadose Zone Soil	ETLAVSVWRKLIYSLIWQSVMWRPGKLWFLIGVKNPLPIRPTATASQRAPLRRCAVRQIRDFSRATPSFHPASGDTFSS*
Ga0137404_104067772	3300012929	Vadose Zone Soil	MYSLVWESVMWRPGKLRFLIDVKNPLPIRPTATARQRAPLRGRAVRQIRDFSRAPPSFRHEPGDTFSP*
Ga0137407_121967761	3300012930	Vadose Zone Soil	MYSLIWQSVMWRPGKLRFLIGVKNPLPIRPAATASQRAPLQGRAARRIRNVSRAAPSFRHEPGDT
Ga0164303_103541552	3300012957	Soil	MYSLVWQSVMWRPGKLRFLIGVKNPLPIRPAATARKHRPLRGRAGRQIRDFRRATPSFRRESGDTFSS*
Ga0126369_100762822	3300012971	Tropical Forest Soil	MYSLIWQSVMWRPGKLRFLSGVKNPLPIRPIATARHRAPLRRARRRQFRSSSQATPFRHEPGGILILIDATPSS*
Ga0164307_104562632	3300012987	Soil	MYSLVWQSVMWRPGKLRFLIGVKNPLPIRPAATARKHGPLRGRAGRQIRDFRRATPSFRRASGDSFSS*
Ga0181522_102516641	3300014657	Bog	MYSLIWQSVMWRPGKMRFLIGVKNRLHIQPAAIARSPPVPGGRCRWIRDFSRAAPSLRRKPSDAFSS*
Ga0137403_106899521	3300015264	Vadose Zone Soil	SVMWRPGKLRFLIGVKNPLPIRPAATARKHSPLRGRAGRQIRDFRRATPSFRRESGDTFSS*
Ga0182034_103866372	3300016371	Soil	MYSLIWQSVMWRPGKLRFLNGVKNSLPIRPTATARQRAPLRRARRRQIRSSSQATPFRHEPGGIVILIDATPSS
Ga0066667_111560932	3300018433	Grasslands Soil	MYSLIWQSVMWRPGKLRFLIGVKNPLPIRPTATARKHGPLRGPADRQIRDFSRATPSFRHASGDTFSS
Ga0066662_116086421	3300018468	Grasslands Soil	MYSLVWQSVMWRPGKLRFLIGVKNPLPIRPAVTARKHGPLRGRAGRQIRDFSRATPSFRRASGDSFSS
Ga0137408_10932901	3300019789	Vadose Zone Soil	MYSLVWESVMWRPGKLRFLIDVKNPLPIRPTATARQRAPLRGRAVRQIRDFSRAPPSFRHEPGDTFSP
Ga0179590_10187592	3300020140	Vadose Zone Soil	MYSLIWQSVMWRPGKLRFLIGVKNPLPIRPTVTARKHGPLQGRADRQIRDSSRATPSFRHASGDTLSHPD
Ga0210407_100395206	3300020579	Soil	AWRKLMYSLVWQSVMWRPGKLRFLIGVKNPLPIRPAATARQRAPLRGRAVRRIRDFSRATPSFRHEPGDTFSS
Ga0210403_101096711	3300020580	Soil	MYSLVWQSVMWRPGKLRFLIGVKNPLPIRPAATARKHGPLRGRAGRQIRDFSRATPSFRHEPGGTFSP
Ga0207693_100435981	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MYSLVWQSVMWRPGKLRFLIGVKNPLPIRPAATARKHGPLRGRAGRQIRDFRRATPSFRRASGDSFSS
Ga0207640_108493171	3300025981	Corn Rhizosphere	MYSLVWQSVMWRPGKLRFLIGVKNPLPIRPAATARKHRPLRGRAGRQIRDFRRATPSFRRESGDTFSS
Ga0207702_107444982	3300026078	Corn Rhizosphere	MYSLIWQSVMWRPGKGQFLIGVKNLLPIRPTAIARKHGPLRSLRRSSDSDFSRATPTFGRASDDSFSP
Ga0257156_10512112	3300026498	Soil	MYSLVWQSVMWRPGKLRFLIGVKNPLPIRPAATARKHDPLRGRAGRQIRDFSRATPSFRRASGDTFSS
Ga0209059_11807222	3300026527	Soil	MYSLIWQSVMWRPGKLRFLIGVKNPLPIRPTATARKHGPLRGPADRQIRDFSRATPSFRHASGDT
Ga0209648_100136666	3300026551	Grasslands Soil	MYSLIWQSVMWRPGKLWFLIGVKNPLPIRPAATASQRAPLRRCAGRQIRDFSRATPSFHHASGDTFSS
Ga0209648_100418286	3300026551	Grasslands Soil	MYNLVWQSVMWRPGKLWFLIGVKNPLPIRPAATASQRAPLRGRAVRRIRHVSRATPSFRHEPGDTFSS
Ga0209577_100836832	3300026552	Soil	MYSLIWQSVMWRPGKLWFLIGVKNPLPIRPAATASQRAPLRRCAVRQIRDFSRATPFFHHASGDTFSS
Ga0209577_101114431	3300026552	Soil	MWRPGKLRFLIGMKNPLPIRPTATARKYGPLRGRAGRQIRDFSRATPSFRGH
Ga0179593_11187151	3300026555	Vadose Zone Soil	MWRPGKLRFLIGVKNPLPIRPTVTARKHGPLQGRADRQIRDSSRATPSFRHASGDTLSHP
Ga0179593_12227815	3300026555	Vadose Zone Soil	MYNLIWQSVMWRPGKLRFLIGVKNPLPIRPAATARKHDPLRGRAGRQIRDFRRATPSFRRASGDTFSS
Ga0209326_10002522	3300026899	Forest Soil	MYSLIWQSVMWRPGKLRFLIGVKNPLPIRPTVTARKHGPLQGRADRQIRDSSRATPSFRHASGDTLSHPE
Ga0207806_10221651	3300027049	Tropical Forest Soil	MYSLIWQSVMWRPGKLRFLSGVKNSLPIRPIATARQRAPLRRARRRRIRASSRATPSFRHEPGGILILIDAVLSS
Ga0208098_10012891	3300027172	Forest Soil	MYSLVWQSVMWRPGKLWFLIGVKNPLPIRPAATARKQGPLRGRAGRQIRDFSRATPSFRHAS
Ga0209331_10218053	3300027603	Forest Soil	MYSLVWQSVMWRPGKLRFLIGVKNPLPIRPAATARKHGPLRGRAGRQIRDFSRATPSFHHEPGDIFSS
Ga0209528_10395081	3300027610	Forest Soil	SLVWQSVMWRPGKLRFLIGVKNPLPIRPAATARKHGPLRGRAGRQIRNSGRATPSLRHASGYTLSS
Ga0209076_10156793	3300027643	Vadose Zone Soil	MYSLVWQSVMWRPGKLRFLIGVKNPLPIRPAATARKHGPLRGPAGRQIRNSGRATPSLR
Ga0208990_11100741	3300027663	Forest Soil	MYSLVWQSVMWRPGKLRFLIGVKNPLPIRPAATARKHGPLRGRAGRQIRDFSRATPSFRH
Ga0208989_100287111	3300027738	Forest Soil	MYSLIWQSVMWRPGKLRFLIGVKNPLPIRPTVTARKHGPLQGRADRQIRDSSRATPSFRHAS
Ga0209693_100105534	3300027855	Soil	MYSLVWQSVMWRPGKLWFLIGVKNPLPIRPAATARKQGPLRGRAGRQIRDFSRATPSFRRASGDTFSS
Ga0209380_100702383	3300027889	Soil	MYSLVWQSVMWRPGKLWFLIGVKNPLPIRPAATARKQGPLRGRAGRQIRDFSRATPSFRRASG
Ga0209526_100039589	3300028047	Forest Soil	MYSLVWQSVMWRPGKLRFLIGVKNPLPIRPAATARKHGPLRGRAGRQIRDFRRATPSFRRASGDTFSS
Ga0318538_100878262	3300031546	Soil	MYSLIWQSVMWRPGKLRFLNGVKNSLPIRPTATARQRAPLRRARRRQIRSSSQATPFRHEPAGILILIDATPSS
Ga0318528_103827701	3300031561	Soil	MYSLIWQSVMWRPGKMRFLIGMKNPLPIRPAATARQHRPLRGRAGRQIRDFSRATPSF
Ga0318515_100541294	3300031572	Soil	MYSLIWQSVMWRPGKLRFLNGVKNSLPIRPTATARQRAPLRRARRRQIRSSSQATPFRHEPAGILI
Ga0310915_100674671	3300031573	Soil	MYSLIWQSVMWRPGKLRFLVGVKNPLPIRPTAIARKHGPLRSHAGRQIRDFSRSTPSFRHASGDTFSS
Ga0318555_102966502	3300031640	Soil	MYSLIWQSVMWRPGKLRFLNGVKNSLPIRPTATARQRAPLRRARRRQIRSSSQATPFRHEPGGILILIDATPSS
Ga0318561_100738833	3300031679	Soil	MYSLIWQSVMWRPGKLRFLNGVKNSLPIRPTATARQRAPLRRARRRQIRSSSQATPFRHEPGGILILIDAT
Ga0318496_102443221	3300031713	Soil	MYSLIWQSVMWRPGKLRFLNGVKNSLPIRPTATARQRAPLRRARRRQIRSSSQATPFRHEPAGILILI
Ga0306917_101271703	3300031719	Soil	MYSLIWQSVMWRPGKLRFLVGVKNPLPIRPTAIARKHGPLRSRAGRQIRDFSRSTPSFRHASGDTFSS
Ga0306918_107596433	3300031744	Soil	KLRFLIGVKNPLPIRPTATARKHGPLRGPADRQIRDFSRATPSFRHASGDIFSS
Ga0318509_100498043	3300031768	Soil	MYSLIWQSVMWRPGKLRFLNGVKNSLPIRPTATARQRAPLRRARRRQIRSSSQATPFRHEPGG
Ga0307473_110332682	3300031820	Hardwood Forest Soil	MYSLVWQSVMWRPGKLRFLIGVKNPLPIRPAATASQRAPLWRCAVRQIRDFSRATPSFHPASGDTFSS
Ga0306925_103196352	3300031890	Soil	MYSLIWQSVMWRPGKLRFLNGVKNSLPIRPTATARQRAPLRRARRRQIRSSSQATPFRHEPAGILILIVATPSS
Ga0318536_101894371	3300031893	Soil	MYSLIWQSVMWRPGKLRFLNGVKNSLPIRPTATARQRAPLRRARRRQIRSSSQATPF
Ga0306923_101125105	3300031910	Soil	MYSLIWQSVMWRPGKLRFLNGVKNSLPIRPTATARQRAPLRRARRRQIRSSSQATPFRHEPAGILILIDATPS
Ga0306923_108612721	3300031910	Soil	VTWRPGKLRFLIGVKNPLPIRPTATARKHGPLRGPADRQIRDFSRATPSFRHASGDIFSS
Ga0310910_102230321	3300031946	Soil	MYSLIWQSVMWRPGKLRFLNGVKNSLPIRPTATARQRAPLRRARRRQIRSSSQATPFRHEPAGILILID
Ga0318531_102781562	3300031981	Soil	MYSLIWQSVTWRPGKLRFLIGVKNPLPIRPTATARKHGPLRGPADRQIRDFSRATPSFRHASGDIFSS
Ga0307472_1025728341	3300032205	Hardwood Forest Soil	MYSLIWQSVMWRPGKLRFLIGVKNPLPIRPAATASQRAPLRGRTVRQIRNVSRATPSFGHKPADTFSF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F090787

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences