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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F090774 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 108 |
| Average Sequence Length | 45 residues |
| Representative Sequence | VSPPAAAFARDVVAAAAPQGRERAKNLLWAAGKLADYAIGLGLE |
| Number of Associated Samples | 102 |
| Number of Associated Scaffolds | 108 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 94.44 % |
| % of genes near scaffold ends (potentially truncated) | 100.00 % |
| % of genes from short scaffolds (< 2000 bps) | 94.44 % |
| Associated GOLD sequencing projects | 99 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.70 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (80.556 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.074 % of family members) |
| Environment Ontology (ENVO) | Unclassified (29.630 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Unclassified (39.815 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 50.00% β-sheet: 0.00% Coil/Unstructured: 50.00% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.70 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 108 Family Scaffolds |
|---|---|---|
| PF00589 | Phage_integrase | 2.78 |
| PF05015 | HigB-like_toxin | 0.93 |
| PF02687 | FtsX | 0.93 |
| PF13191 | AAA_16 | 0.93 |
| PF08843 | AbiEii | 0.93 |
| PF07477 | Glyco_hydro_67C | 0.93 |
| PF02371 | Transposase_20 | 0.93 |
| PF00463 | ICL | 0.93 |
| COG ID | Name | Functional Category | % Frequency in 108 Family Scaffolds |
|---|---|---|---|
| COG2224 | Isocitrate lyase | Energy production and conversion [C] | 0.93 |
| COG2253 | Predicted nucleotidyltransferase component of viral defense system | Defense mechanisms [V] | 0.93 |
| COG3547 | Transposase | Mobilome: prophages, transposons [X] | 0.93 |
| COG3549 | Plasmid maintenance system killer protein | Defense mechanisms [V] | 0.93 |
| COG3661 | Alpha-glucuronidase | Carbohydrate transport and metabolism [G] | 0.93 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 80.56 % |
| All Organisms | root | All Organisms | 19.44 % |
| Visualization |
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| Powered by ApexCharts |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 24.07% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 9.26% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 8.33% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 7.41% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 6.48% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 5.56% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 3.70% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 2.78% |
| Bog | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog | 2.78% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 2.78% |
| Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil | 2.78% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 1.85% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 1.85% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 1.85% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 1.85% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil | 1.85% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 0.93% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 0.93% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 0.93% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 0.93% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 0.93% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 0.93% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 0.93% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 0.93% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 0.93% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 0.93% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 0.93% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere | 0.93% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.93% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.93% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 0.93% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 0.93% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300001356 | Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 | Environmental | Open in IMG/M |
| 3300004157 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2 | Environmental | Open in IMG/M |
| 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Environmental | Open in IMG/M |
| 3300005437 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG | Environmental | Open in IMG/M |
| 3300005456 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG | Host-Associated | Open in IMG/M |
| 3300005534 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 | Environmental | Open in IMG/M |
| 3300005574 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 | Environmental | Open in IMG/M |
| 3300005610 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 | Environmental | Open in IMG/M |
| 3300006046 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101 | Environmental | Open in IMG/M |
| 3300006173 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG | Environmental | Open in IMG/M |
| 3300006174 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014 | Environmental | Open in IMG/M |
| 3300010373 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4 | Environmental | Open in IMG/M |
| 3300012285 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG | Environmental | Open in IMG/M |
| 3300012357 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG | Environmental | Open in IMG/M |
| 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Host-Associated | Open in IMG/M |
| 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Host-Associated | Open in IMG/M |
| 3300014166 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015 | Environmental | Open in IMG/M |
| 3300014492 | Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG | Environmental | Open in IMG/M |
| 3300014499 | Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG | Environmental | Open in IMG/M |
| 3300014838 | Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300016319 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H | Environmental | Open in IMG/M |
| 3300016357 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 | Environmental | Open in IMG/M |
| 3300016371 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 | Environmental | Open in IMG/M |
| 3300016387 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 | Environmental | Open in IMG/M |
| 3300017821 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2 | Environmental | Open in IMG/M |
| 3300017926 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2 | Environmental | Open in IMG/M |
| 3300017928 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1 | Environmental | Open in IMG/M |
| 3300017932 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4 | Environmental | Open in IMG/M |
| 3300017942 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3 | Environmental | Open in IMG/M |
| 3300017943 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4 | Environmental | Open in IMG/M |
| 3300017947 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG | Environmental | Open in IMG/M |
| 3300017955 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2 | Environmental | Open in IMG/M |
| 3300017961 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG | Environmental | Open in IMG/M |
| 3300017972 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG | Environmental | Open in IMG/M |
| 3300017974 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG | Environmental | Open in IMG/M |
| 3300018007 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5 | Environmental | Open in IMG/M |
| 3300018018 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_150 | Environmental | Open in IMG/M |
| 3300018058 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG | Environmental | Open in IMG/M |
| 3300018085 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
| 3300020062 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1 | Environmental | Open in IMG/M |
| 3300020069 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300021171 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M | Environmental | Open in IMG/M |
| 3300021474 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O | Environmental | Open in IMG/M |
| 3300023250 | Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 10-14 | Environmental | Open in IMG/M |
| 3300024245 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK18 | Environmental | Open in IMG/M |
| 3300025907 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026497 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-B | Environmental | Open in IMG/M |
| 3300026927 | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 56 (SPAdes) | Environmental | Open in IMG/M |
| 3300027297 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes) | Environmental | Open in IMG/M |
| 3300027313 | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 45 (SPAdes) | Environmental | Open in IMG/M |
| 3300027662 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027874 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes) | Environmental | Open in IMG/M |
| 3300028780 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2 | Environmental | Open in IMG/M |
| 3300028828 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202 | Environmental | Open in IMG/M |
| 3300030007 | I_Palsa_E1 coassembly | Environmental | Open in IMG/M |
| 3300030013 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_3 | Environmental | Open in IMG/M |
| 3300030053 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2 | Environmental | Open in IMG/M |
| 3300030706 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2) | Environmental | Open in IMG/M |
| 3300030730 | Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031170 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S | Environmental | Open in IMG/M |
| 3300031233 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2 | Environmental | Open in IMG/M |
| 3300031236 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1 | Environmental | Open in IMG/M |
| 3300031525 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3 | Environmental | Open in IMG/M |
| 3300031543 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20 | Environmental | Open in IMG/M |
| 3300031549 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24 | Environmental | Open in IMG/M |
| 3300031640 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23 | Environmental | Open in IMG/M |
| 3300031668 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23 | Environmental | Open in IMG/M |
| 3300031715 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05 | Environmental | Open in IMG/M |
| 3300031744 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2) | Environmental | Open in IMG/M |
| 3300031748 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22 | Environmental | Open in IMG/M |
| 3300031765 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22 | Environmental | Open in IMG/M |
| 3300031770 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17 | Environmental | Open in IMG/M |
| 3300031771 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19 | Environmental | Open in IMG/M |
| 3300031797 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23 | Environmental | Open in IMG/M |
| 3300031798 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19 | Environmental | Open in IMG/M |
| 3300031819 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21 | Environmental | Open in IMG/M |
| 3300031831 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20 | Environmental | Open in IMG/M |
| 3300031833 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178 | Environmental | Open in IMG/M |
| 3300031859 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25 | Environmental | Open in IMG/M |
| 3300031860 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25 | Environmental | Open in IMG/M |
| 3300031879 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2) | Environmental | Open in IMG/M |
| 3300031896 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19 | Environmental | Open in IMG/M |
| 3300031996 | Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2 | Environmental | Open in IMG/M |
| 3300032008 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18 | Environmental | Open in IMG/M |
| 3300032009 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19 | Environmental | Open in IMG/M |
| 3300032035 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170 | Environmental | Open in IMG/M |
| 3300032067 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22 | Environmental | Open in IMG/M |
| 3300032090 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22 | Environmental | Open in IMG/M |
| 3300032261 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2) | Environmental | Open in IMG/M |
| 3300032805 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2 | Environmental | Open in IMG/M |
| 3300032896 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4 | Environmental | Open in IMG/M |
| 3300032954 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2 | Environmental | Open in IMG/M |
| 3300032955 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5 | Environmental | Open in IMG/M |
| 3300033134 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2 | Environmental | Open in IMG/M |
| 3300033158 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1 | Environmental | Open in IMG/M |
| 3300033289 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108 | Environmental | Open in IMG/M |
| 3300033475 | Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC | Environmental | Open in IMG/M |
| 3300033818 | Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-3-M | Environmental | Open in IMG/M |
| 3300034065 | Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 1-5 | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGI12269J14319_101039694 | 3300001356 | Peatlands Soil | VTAEAAAFARDVISQVAPGGRERAKNLLWAAGKLADYGLGLGLEPVPEV |
| Ga0062590_1026554091 | 3300004157 | Soil | VSAEAAAFARDVITTMRPGGQERAKNLLWAAGKLADYAIGLGL |
| Ga0070714_1001133221 | 3300005435 | Agricultural Soil | VSPLAAAFARHVITEAGPAGRERAKNLLWAAGKLADYGIGLGL |
| Ga0070710_106671651 | 3300005437 | Corn, Switchgrass And Miscanthus Rhizosphere | VSPLAAAFARHVITEAGPAGRERAKNLLWAAGKLADYGIGL |
| Ga0070678_1010407222 | 3300005456 | Miscanthus Rhizosphere | VSAEAAAFARDVITTVRPGGQERAKNLLWAAGKLADYAIGLGLEAVPEVVLHP |
| Ga0070735_104401751 | 3300005534 | Surface Soil | VSPQAAAFARDVITEAGPAGRERAKNLLWAAGKLADY |
| Ga0066694_104138642 | 3300005574 | Soil | VSPRAASFAREVIARTGPEGRERAKNLLWAAGKLADYA |
| Ga0070763_108477572 | 3300005610 | Soil | VSAPAAAFARDAVARAGPGRAERAKCLLWAAGRLADWAIPLGMDAVPGALLHP |
| Ga0066652_1010562842 | 3300006046 | Soil | VSPRAAAFARDVISRVAPGGRERAKNMLWAAGKLADYAIGLGLDPVPEVVLH |
| Ga0070716_1011514702 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | VPPPAAAFARDVVAAAGPGGQERAKNLLWAAAKLADYAIGLGLDPVPEVLLHPSV |
| Ga0075014_1008429082 | 3300006174 | Watersheds | VSPQAAAFARQVVPAAAPGGRERAKNLLWAAGKLADYAAWLGLDLVPGV |
| Ga0134128_103348421 | 3300010373 | Terrestrial Soil | VSPRAAAFARHVVPLAAPGGRERAKNLLWAAGKLAGWAVGLG |
| Ga0137370_105426042 | 3300012285 | Vadose Zone Soil | VSPRAAGFARAVVARAGPGGRERAKNLLWAAGRLADYGIGLG |
| Ga0137384_100052111 | 3300012357 | Vadose Zone Soil | ARAVVTGAAPGGQERAKSLLWAAGKLADYATGLGLEPVPGCSCIRR* |
| Ga0157370_114226121 | 3300013104 | Corn Rhizosphere | VSPRAAAFARGVVTAVAPAGRERAKNLLWAAGKLAD |
| Ga0163162_125887152 | 3300013306 | Switchgrass Rhizosphere | VSPPAAAFARDVITAAGPQGRERAKNLLWAAAKLAEWALPLG |
| Ga0134079_104121751 | 3300014166 | Grasslands Soil | VSPPAAAFARDVITAAGPRGQERAKNLLWAAGKLADYAASLGLDLVPGVVLHPSVA |
| Ga0182013_103145142 | 3300014492 | Bog | VSPQAAVFARAVITETAPAGQERAKNLLWAAGKLADYGIGLGLD |
| Ga0182012_105028221 | 3300014499 | Bog | VSPQAAVFARAVITETAPAGQERAKNLLWAAGKLADYGIGLGLDAVPEVLLHPSV |
| Ga0182030_109359711 | 3300014838 | Bog | VSPQAAVFARAVITETAPAGQERAKNLLWAAGKLADYGIGLGLDAVPEVLL |
| Ga0182033_105815691 | 3300016319 | Soil | VSPPAAAFARDVTGQVAPGGRERAKNLLWAAGKLADFGLGLGLEPVPE |
| Ga0182033_105985702 | 3300016319 | Soil | VPPRAAAFARDVIGQVAPGGRERAKNLLWAAGKLADYVI |
| Ga0182032_104501183 | 3300016357 | Soil | VSPQAAAFARDVIAAARPGGQERAKNLLWAAGKLADFGL |
| Ga0182034_111556802 | 3300016371 | Soil | VSPQAAAFARQVVPLAGPGGRERAKCLLWAAGKAADYAVS |
| Ga0182040_105294753 | 3300016387 | Soil | VSPPAAAFARDVIAAVQPGGQERAKNLLWAAGKLA |
| Ga0187812_11044142 | 3300017821 | Freshwater Sediment | VSPRAAAFARDVIAAVAPEGRERAKNLLWAAGKLADYAASLG |
| Ga0187807_11052561 | 3300017926 | Freshwater Sediment | VSPRAAVFARDVVAGTAPAGRDRAKNLLWAAGKLADYGLGLGLEPVPE |
| Ga0187806_11824981 | 3300017928 | Freshwater Sediment | VSPAAAVFARDVIGQVAPGGRERAKNLLWAAGKLADYAIGLGLETVPEV |
| Ga0187806_12253012 | 3300017928 | Freshwater Sediment | VSPQAAAFARDVVARIAPAGRDRAKNLLWAAGKLADYGLGLGL |
| Ga0187814_104011631 | 3300017932 | Freshwater Sediment | VSPAAAAFARDVVARTAPAGRDRAKNLLWAAGKLADYGLGLGLEPVPEV |
| Ga0187808_104850192 | 3300017942 | Freshwater Sediment | VSPAAAVFARDVIGQVAPGGRERAKNLLWAAGKLADYAIGLGL |
| Ga0187819_102417031 | 3300017943 | Freshwater Sediment | VSPRAAAFARQVVPGAAPESRERAKNLLWAAGKLADYAAGLGLELVPEVVLHP |
| Ga0187785_104751781 | 3300017947 | Tropical Peatland | VSPPAAAFARDVITAARPRGQERAKNLLWAAGKLADYAI |
| Ga0187817_106863672 | 3300017955 | Freshwater Sediment | VSPAAAVFARDVIGQVAPGGRGRAKNLLWAAGKLADYAIGLGL |
| Ga0187778_111530162 | 3300017961 | Tropical Peatland | VSPQAAAFARDVIMAVRPGGQERAKNLLWAAGKLADYAASLGLDLVPAVVLH |
| Ga0187781_106652892 | 3300017972 | Tropical Peatland | VSPQAAAFAREVITAVAPGGRERAKNLLWAAAKLAD |
| Ga0187777_104617743 | 3300017974 | Tropical Peatland | VSPPAAAFARAVVPAAGPGGRERAKNLLWAAARLADYAIPLGLDPVPEVLLHP |
| Ga0187805_101888982 | 3300018007 | Freshwater Sediment | VFARDVIRQAAPEGQERAKNLLWAAGKLADYAIGLGLEPVPEVVLH |
| Ga0187886_11611033 | 3300018018 | Peatland | VSPAAAAFARDVITETRPEGRERAKNLLWAAGKLA |
| Ga0187766_107560392 | 3300018058 | Tropical Peatland | VSPQAAAFARAVITETGPGGQERAKNLLWAAGRLADYGIGL |
| Ga0187772_104958462 | 3300018085 | Tropical Peatland | VSPQAAAFARDVITAVRPEGKERAKNLLWAAGKLAGYAIGLGLEPVPEVVL |
| Ga0193724_10952981 | 3300020062 | Soil | VSPPAAAFARDVITAAGPAGQERAKNLLWAAGKLADYAASLDIG |
| Ga0197907_103357531 | 3300020069 | Corn, Switchgrass And Miscanthus Rhizosphere | VSPQAAAFARGVIAKTAPQGRERAKNLLWAAGKLADYAASLGLDLGPEV |
| Ga0210405_110499032 | 3300021171 | Soil | VSPQAAAFARDVITAAAPGGRERAKNLLWAAARLADYAVPLGLDPAPE |
| Ga0210390_110430202 | 3300021474 | Soil | VSPQAAEFARQVVPAVSPGGQERAKNLLWAAGRLADYAASLGLELEPGVV |
| Ga0224544_10265582 | 3300023250 | Soil | VSPQAAAFARQVVPAARPGGRERAKNLLWAAARLAGYAIPLGL |
| Ga0247677_10750461 | 3300024245 | Soil | VSPQAAAFARDVISKTGPQGRERAKNLLWAAAKLADY |
| Ga0207645_101769283 | 3300025907 | Miscanthus Rhizosphere | VSPPAAAFARDVITAAGPGGQERAKNLLWAAGKLADY |
| Ga0207695_114183102 | 3300025913 | Corn Rhizosphere | VSPPAAAFARDVITAAGPQGRERAKNLLWAAGKLADYAASL |
| Ga0207664_102133233 | 3300025929 | Agricultural Soil | VSPQAAAFARDVITRTGPEGRERAKNLLWAAGKLADYAIGLGLEAAPEVLLHPST |
| Ga0207690_112709712 | 3300025932 | Corn Rhizosphere | VSPPAAAFARDVITAAGPGGQERAKNLLWAAGKLADYAASLGLD |
| Ga0257164_10382651 | 3300026497 | Soil | VSAEAAAFARDVITAAGPGGRERAKNLLWAAGKLADYAASLGLDL |
| Ga0207744_10235301 | 3300026927 | Tropical Forest Soil | VSPQAAAFARDVIVKTAPQGRERAKNLLWAAGKLADYAMPLGLETVPEVLLHPS |
| Ga0208241_10445882 | 3300027297 | Forest Soil | VSPRAASFAREVIARTGPEGRERAKNLLWAAGKLADYALGLGMEPVPEAVLHPS |
| Ga0207780_10832762 | 3300027313 | Tropical Forest Soil | VSPQAAAFARDVIAQAAPEGRERAKNLLWAAGKLADYAIGLGLEPVPG |
| Ga0208565_10858022 | 3300027662 | Peatlands Soil | VTAEAAAFARDVISQVAPGGRERAKNLLWAAGKLADYGLGQG |
| Ga0209465_103343512 | 3300027874 | Tropical Forest Soil | VSPRAAAFARDVVAAVAPGGQERAKSLLWAAGRLAGYPAPL |
| Ga0302225_105805692 | 3300028780 | Palsa | VSPQAAAFARDVIAKTEPEGRERAKNLLWAAGKLADYALGLGLDAAPEAVLHP |
| Ga0307312_108286882 | 3300028828 | Soil | VPPPAAAFARDVIGQVAPGGRERAKNLLRAAGKLADYGIGLG |
| Ga0311338_103627113 | 3300030007 | Palsa | VSPEAAAFARQAVAAVMPGGRERAKNLLWAAGKLADWAFLLGPDAAPEVLLHP |
| Ga0311338_109158112 | 3300030007 | Palsa | VSAPAAAFARDAVTRAAPGKAERAKCLLRAAGRLADWAVPLGMDAVPGALLHPSTVE |
| Ga0302178_103756951 | 3300030013 | Palsa | VSPQAAAFAREVIGGVAPDGRERAKNLLWAAGKLADWAIGLGLDAVPEV |
| Ga0302177_100561071 | 3300030053 | Palsa | VSPRAAAFARDVITRTGPQGRERAKNLLQSAGKLADYAIGLGLEPVPD |
| Ga0310039_103241062 | 3300030706 | Peatlands Soil | AAAFARDVIGQAAPEGRERAKNLLWAAGRLAGYAASLGLDLVPEVVFHPS |
| Ga0307482_12753432 | 3300030730 | Hardwood Forest Soil | VSPQAAASARDVIGRVAPEGRERAKNLLWAAGKLADYAIGLGLDLVPEAVLHPST |
| Ga0307498_102438602 | 3300031170 | Soil | VSPRAAAFARDVISRVAPGGRERAKSLLWAAAKLADWALPLGLEAVPEVLLHPSA |
| Ga0302307_104601502 | 3300031233 | Palsa | VSPRAAAFARDVITRTGPQGRERAKNLLQSAGKLADYAIGL |
| Ga0302324_1022070871 | 3300031236 | Palsa | VSAPAAAFARDAVARAGPGRAERAKCLLWAAGRLA |
| Ga0302326_103349394 | 3300031525 | Palsa | VSPPAAAFARDVVARAAPAGRDRAKNLLWAAGKLADYGLGLGLEPVPEV |
| Ga0318516_101879123 | 3300031543 | Soil | VSAEAAAFARDVITAAGPGGQERAKNLLWAAGKLADYAASLGLDLV |
| Ga0318571_103526642 | 3300031549 | Soil | VSPGAAAFARDVVAQAGPAGRERAKNLLWAAGRLADWALPLGLE |
| Ga0318555_107232361 | 3300031640 | Soil | VPAEAAAFARQVVPLAAPAGRERAKNLLWAAGRLADW |
| Ga0318542_105715351 | 3300031668 | Soil | VSAEAAAFARDVITRTGPEGRERAKNLLWAAGKLADYALGLGLEAVPEVVLH |
| Ga0307476_107534362 | 3300031715 | Hardwood Forest Soil | VPPQAAAFARRVVPGAAPAGRERAKNLLWAAGKLAGYGLGL |
| Ga0306918_107659861 | 3300031744 | Soil | VSPEAAAFARDVIAQAGLDGRERAKNLLWAAGKLADY |
| Ga0318492_104507661 | 3300031748 | Soil | VPAEAAAFARQVVPLAAPAGRERAKNLLWAAGRLADWA |
| Ga0318554_103346023 | 3300031765 | Soil | VSPSAAAFARAAVARCGDLDRERAKNLLWAAGKLADHGI |
| Ga0318521_103841132 | 3300031770 | Soil | VPPPAAAFARDVIATVAPGGQERAKNLLRAAAKLAD |
| Ga0318546_106367151 | 3300031771 | Soil | VPAQAAAFARQVVPLAAPGGRERAKNLLWAAGKLAGWAAGLGLDPVPEV |
| Ga0318550_101360381 | 3300031797 | Soil | VSAEAAAFARDVITAAGPGGQERAKNLLWAAGKLADYAA |
| Ga0318523_101043641 | 3300031798 | Soil | VSPPAAAFARDVVAAAAPQGRERAKNLLWAAGKLADYAIGLGLE |
| Ga0318568_106182652 | 3300031819 | Soil | VPPRAAAFARDVIAAVAPDGQERAKNLLWAAGKLADWAIGLGLEPAPEVLLHPSV |
| Ga0318564_101267791 | 3300031831 | Soil | VSAEAAAFARDVITAAGPGGQERAKNLLWAAGKLADYAASL |
| Ga0310917_101225191 | 3300031833 | Soil | VSPQAAVFAREVITRTGPAGRERAKNLLWAAGKLADYAIPLGLEAVPEVLLHPS |
| Ga0318527_102422831 | 3300031859 | Soil | VSPPAAAFARDVITAAGPQGQERAKNLLRAAGKLADYAGSPGLDLV |
| Ga0318495_103919121 | 3300031860 | Soil | VSPEAAAFARDVIAQAGPDGRERAKNLLWAAGKLADYAASLGVDLVPE |
| Ga0306919_105631451 | 3300031879 | Soil | VSPLAAVFARDVTGQVAPGGRERAKNLLWAAGKLA |
| Ga0318551_104110031 | 3300031896 | Soil | VSPEAAAFARDAIGRVAPEGRERAKNLLWAAGKLADYGIGLG |
| Ga0308176_113968431 | 3300031996 | Soil | VSPQGAAFARGVVAVAAPGGRERAKNLLWAAGKLADWAAGL |
| Ga0318562_105158232 | 3300032008 | Soil | VSPRAAAFAREVIAVTAPEGKERAKSLLQAAGKLA |
| Ga0318563_103045062 | 3300032009 | Soil | VSPPAAAFARDVIGQVAPGGRERAKNLLWAAGKLADFGLGLGLE |
| Ga0310911_105910601 | 3300032035 | Soil | VPAEAAAFARQVVPLAAPGGRERAKNLLWAAARLADYAISLGLEPVPD |
| Ga0318524_103614702 | 3300032067 | Soil | VSPEAAAFARDAIGRVAPEGRERAKNLLWAAGKLADYGIGLGLD |
| Ga0318518_104660272 | 3300032090 | Soil | VSAEAAAFARDVITQARPEGRERAKNLLWAAGKLADYAASLGLDLVPE |
| Ga0306920_1020057461 | 3300032261 | Soil | VSPEAAAFARDVIARAGPERRERAKNLLWAAGKLADYAMPLGLE |
| Ga0306920_1026040792 | 3300032261 | Soil | VSAEAAAFARDVITAVAPQGQERAKNLLWAAGKLADYAIG |
| Ga0306920_1035180371 | 3300032261 | Soil | VSPRAAAFAREVIGTVAPPGRERAKNLLWAAGKLADYGIGLG |
| Ga0335078_126554682 | 3300032805 | Soil | VPPPAAAFARDVIATVAPGGRERAKNLLWAAAKLADYAIGLGLDPVPEVLLHPS |
| Ga0335075_108271052 | 3300032896 | Soil | VSAPAAAFARDVVARTEPGGRERAKNLLWAAGKLADYAAGLGLDLVPETV |
| Ga0335075_108784432 | 3300032896 | Soil | VPPQAAAFARDVIGQVAPQGRERAKNLLWAAGKLADYAASLGLDLVPEVVLHP |
| Ga0335083_106082023 | 3300032954 | Soil | VSPEAAAFARKVVPAAVPAGRERAKNLLWAAGKLADYAL |
| Ga0335076_101008171 | 3300032955 | Soil | VSPPAAAFARDVITVTGPAGRDRAKNLLWAAGKLADYGL |
| Ga0335073_111630912 | 3300033134 | Soil | VPPQAAAFARDVIGQVAPEGRERAKNLLWAAGKLA |
| Ga0335077_119261722 | 3300033158 | Soil | VSAKAAVFARDVIAQTGPGSRERAKNLLWAAGKLADYAASLGLELTPGVV |
| Ga0310914_112374331 | 3300033289 | Soil | VSPQAAAFARDVIAAARPGGQERAKNLLWAAGKLADFG |
| Ga0310811_109989822 | 3300033475 | Soil | VSPRAAAFARQVVPLAAPGGQERAKNLLWAAGKLADY |
| Ga0334804_077058_2_157 | 3300033818 | Soil | VSPQAAVFARAVITETAPAGQERAKNLLWAAGKLADYGIGLGLDAVPEVLLH |
| Ga0334827_013332_3421_3567 | 3300034065 | Soil | VSPQAAVFARAVITETAPAGQERAKNLLWAAGKLADYGIGLGLDAVPEV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |