Basic Information | |
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Family ID | F090752 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 108 |
Average Sequence Length | 42 residues |
Representative Sequence | VWDGMDGPIVERENVALDSQFAVHRYLRLAEKTAVGFHWDW |
Number of Associated Samples | 101 |
Number of Associated Scaffolds | 108 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 3.70 % |
% of genes near scaffold ends (potentially truncated) | 97.22 % |
% of genes from short scaffolds (< 2000 bps) | 90.74 % |
Associated GOLD sequencing projects | 98 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (51.852 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (27.778 % of family members) |
Environment Ontology (ENVO) | Unclassified (27.778 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (50.000 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 39.02% β-sheet: 0.00% Coil/Unstructured: 60.98% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Peatland Bog Forest Soil Bog Iron-Sulfur Acid Spring Watersheds Groundwater Sediment Soil Soil Vadose Zone Soil Tropical Forest Soil Grasslands Soil Surface Soil Peatlands Soil Agricultural Soil Soil Grasslands Soil Soil Soil Hardwood Forest Soil Soil Tropical Peatland Tropical Forest Soil Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Palsa Arabidopsis Rhizosphere Ectomycorrhiza Populus Rhizosphere Corn Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Boreal Forest Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI26340J50214_100065943 | 3300003368 | Bog Forest Soil | AVWDGMDGPIVERESVTLDSQFAVHRYLRLAEKTTAGFHWDW* |
JGIcombinedJ51221_103219802 | 3300003505 | Forest Soil | DGMDGPIVEREPVGLDSQFAVHRYLRLAEQTAVGFHWDW* |
Ga0066688_107832162 | 3300005178 | Soil | VEWAVWDGLDGPIVERERVALDYQFAVHRYLRLAEKTAVGFHWDW* |
Ga0066388_1044533482 | 3300005332 | Tropical Forest Soil | WAVWDGMDGPIVERENVVLDSQFAVHRYLRLAEKTVIGFHWDW* |
Ga0070668_1002816711 | 3300005347 | Switchgrass Rhizosphere | KLPGNVVWAVWDGMDGPIIERESVALDSQFAVHRYLRLAETTVVGFHWDW* |
Ga0070707_1006892832 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | GNVVWAVWDGMDGPIIERESVALDSQFAVHRYLRLAEQTVVGFHWDW* |
Ga0070741_108079312 | 3300005529 | Surface Soil | DGMEGPIVDAQPVTLDSQHAVHRYLRLAERTVAGFHWEW* |
Ga0070684_1001534253 | 3300005535 | Corn Rhizosphere | WAVWDGMDGPIIERESVALDSQFAVHRYLRLAETTVVGFHWDW* |
Ga0066697_107601562 | 3300005540 | Soil | PGKLPGNVVWAIWDGMDGPIIERESVALDSQFAVHRYLRLAEKTVVGFHWDW* |
Ga0066670_107537492 | 3300005560 | Soil | FHPGKLPGNVVWAIWDGMDGPIIERESVALDSQFAVHRYLRLAEKTVVGFHWDW* |
Ga0066693_102173991 | 3300005566 | Soil | WDGMDGPIIERESVALDSQFAVHRYLRLAEKTVVGFHWDW* |
Ga0066696_103111312 | 3300006032 | Soil | VWAIWDGMDGPIIERESVALDSQFAVHRYLRLAEKTVVGFHWDW* |
Ga0075029_1008973241 | 3300006052 | Watersheds | VVWAVWDGMDGPIVERERVALDSQFAVHRYLRLAEKTTVGFHWDW* |
Ga0075030_1007314201 | 3300006162 | Watersheds | VWDGMDGPIVERESVALDSQFAAHRYLRLAEKTTVGFHWDW* |
Ga0075014_1001605032 | 3300006174 | Watersheds | WAVWDGMDGPIIERENVALDSQFAVHRYLRLAEKTVVGFHWDW* |
Ga0070712_1003358892 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | DGMDGPIIERENVALDSQFAVHRYLRLAETTVVGFHWDW* |
Ga0070765_1023188881 | 3300006176 | Soil | AVWDGMDGPIVERQPVVLDSQFAVHRYLRLAEKTVAGFHWDW* |
Ga0079222_110031502 | 3300006755 | Agricultural Soil | WAVWDGMDGPIIERENVALDSQFAVHRYLRLAETTVVGFHWDW* |
Ga0079220_101561591 | 3300006806 | Agricultural Soil | GPIAESERVTLDSQFAVHRYLRLAEKTTVGFHWDW* |
Ga0073928_105060362 | 3300006893 | Iron-Sulfur Acid Spring | WAVWDGLDGPIVNREDVTLDSQFAVHRYLRLAEKTAVGFHWDW* |
Ga0075424_1019702951 | 3300006904 | Populus Rhizosphere | KLPGNVVWAVWDGMDGPIIERESVVLDSQFAVHRYLRLAETTVVGFHWDW* |
Ga0079219_120242051 | 3300006954 | Agricultural Soil | PIAESEHVTLDSQFAVHRYLRLAEQTTVGFHWDW* |
Ga0066710_1006039203 | 3300009012 | Grasslands Soil | WDGMDGPIIERENVALDSQFAVHRYLRLAETTVVGFHWDW |
Ga0105237_104456062 | 3300009545 | Corn Rhizosphere | GMDGPIIERESVALDSQFAVHRYLRLAETTVVGFHWDW* |
Ga0116216_106327041 | 3300009698 | Peatlands Soil | LPAKVEWAVWDGMDGPIVERESVTLDSQFAVHRYLRLAEKTTVGFHWDW* |
Ga0126374_111536381 | 3300009792 | Tropical Forest Soil | PASCRAPSWAVWDGMDGPIIERESVALDSQFAVHRYLRLAENTAVGFHWDW* |
Ga0116219_101408372 | 3300009824 | Peatlands Soil | DKLPSNVEWAVWDGLEGAIVERESVALDTQFAVHRYLRLAEKTAVGFHWDW* |
Ga0134082_102375541 | 3300010303 | Grasslands Soil | PIIERESVALDSQFAVHRYLRLAEKTVVGFHWDW* |
Ga0126376_129168552 | 3300010359 | Tropical Forest Soil | VWDGMDGPIIERENVALDSQFAVHRYLRLAEKTAVGFHWDW* |
Ga0126361_100762821 | 3300010876 | Boreal Forest Soil | MDGPIVKRESVTLDSQFAVHRYLRLAEKTTVGFHWDWSH* |
Ga0126350_103167682 | 3300010880 | Boreal Forest Soil | PVNVVWAVWDGLDGPIVNREDVTLDSQFAVHRYLRLAEKTAVGFHWDW* |
Ga0137365_102853631 | 3300012201 | Vadose Zone Soil | FHPGKLPGNVVWAIWDGMDGPIIERESVALDSQFAVHRYLRLAEKTAVGFHWDW* |
Ga0137380_106484823 | 3300012206 | Vadose Zone Soil | DGMDGPIAEREHVTLDSQFAVHRYLRLAEKTAVGFHWDW* |
Ga0157329_10012961 | 3300012491 | Arabidopsis Rhizosphere | NVVWAVWDGMDGPIIERESVALDSQFAVHRYLRLAETTVVGFHWDW* |
Ga0157342_10034971 | 3300012507 | Arabidopsis Rhizosphere | MDGPIIERESVALDSQFAVHRYLRLAETTVVGFHWDW* |
Ga0137398_106406821 | 3300012683 | Vadose Zone Soil | GIDGPIAESERVTLDSQFAVHRYLRLAEQTTVGFHWDW* |
Ga0164306_101700731 | 3300012988 | Soil | KLPGSVVWAVWDGMDSPINEREHVALDSQFAVHRYLRLAETTVVGFHWDW* |
Ga0164306_117412202 | 3300012988 | Soil | WDGMDGPIIERESVALDSQFAVHRYLRLAETTVVGFHWDW* |
Ga0157372_119235981 | 3300013307 | Corn Rhizosphere | GPIIERESVALDSQFAVHRYLRLAETTVVGFHWDW* |
Ga0134081_104019671 | 3300014150 | Grasslands Soil | PIIERESVVLDSQFAVHRYLRLAETTVVGFHWDW* |
Ga0134078_101890251 | 3300014157 | Grasslands Soil | LPDSVVWAVWDGMDGPIIDREQVALDSQFAVHRYLRLAETTVVGFHWDW* |
Ga0181526_110883772 | 3300014200 | Bog | MDGPIVERESVTLDSQFAVHRYLRLAEKTTVGFHWDW* |
Ga0182000_100628591 | 3300014487 | Soil | PIIERESVALDSQFAVHRYLRLAETTVVGFHWDW* |
Ga0182041_109487282 | 3300016294 | Soil | VWAIWDGMDGPIVERERVTLDSQFAVHRYLRLAEKTAVGFHWDW |
Ga0182041_119618981 | 3300016294 | Soil | NVEWAVWDGLDGPIVEREPVVLDSQFAVHRYLRLAEKTAVGFHWDW |
Ga0182033_111965632 | 3300016319 | Soil | VAVWDGMDGPIIERESVTLDTQFAVHRYLRLAEKTAVGFHWDW |
Ga0182039_113382722 | 3300016422 | Soil | LPRNVVWAVWDGMDGPIVERERVTLDSQFAVHRYLRLAEKTAVGFHWDW |
Ga0182038_101019621 | 3300016445 | Soil | GPIVEREPVALDSQFAVHRYLRLAERTAVGFHWDW |
Ga0187781_108917231 | 3300017972 | Tropical Peatland | NVVWAVWDGMDGPIVEQEKVSLDSQFAVHRYLRLAEKTAVGFHWDW |
Ga0187777_100953323 | 3300017974 | Tropical Peatland | PSDVVWAVWDGMDGPIVEREHVSLDRQFAVHRYLRLAEKTTVGFHWDW |
Ga0187883_106489033 | 3300018037 | Peatland | DGMDGPIAESEQVTLDRQFAVHRYLRLAEQTTVGFHWNW |
Ga0187887_103764432 | 3300018043 | Peatland | DGPIVEREPVELDSQFAVHRYLRLAEKTTVGFHWDW |
Ga0187774_102730752 | 3300018089 | Tropical Peatland | VWDGMDGPIVERENVALDSQFAVHRYLRLAERTVVGFHWDW |
Ga0210395_113718422 | 3300020582 | Soil | WAVWDGMQGDVADDQEVVLDSQHSVHKYLRLAERTVVGYHWEW |
Ga0210400_110534802 | 3300021170 | Soil | VWDGLEGPIVEREPVALDTQFAVHRYLRLAEQTAVGFHWDW |
Ga0210393_106601981 | 3300021401 | Soil | GMEGPIVERESVALDSQFAVHRYLRLAEKTTVGFHWDW |
Ga0210389_102930962 | 3300021404 | Soil | LPAQVVWAVWDGLDGPIVDREDVTLDSQFAVHRYLRLAEKTAVGFHWDW |
Ga0210384_107315741 | 3300021432 | Soil | WDGMDGPIIERESVALDSQFAVHRYLRLAEQTVVGFHWDW |
Ga0210398_100329694 | 3300021477 | Soil | LPAKVVWAVWDGLDGPIVDREDVTLDSQFAVHRYLRLAEKTAVGFHWDW |
Ga0222622_106233572 | 3300022756 | Groundwater Sediment | NVVWAVWDGMDGPIIERESVVLDSQFAVHRYLRLAETTVVGFHWDW |
Ga0247692_10135181 | 3300024279 | Soil | DGMDGPIIERESVALDSQFAVHRYLRLAETTVVGFHWDW |
Ga0207681_101237601 | 3300025923 | Switchgrass Rhizosphere | GNVVWAVWDGMDGPIIERESVALDSQFAVHRYLRLAETTVVGFHWDW |
Ga0209152_103774212 | 3300026325 | Soil | DGPIIERESVALDSQFAVHRYLRLAEKTVVGFHWDW |
Ga0208098_10002383 | 3300027172 | Forest Soil | GLDGPIVEREPVALDSQFAVHRYLRLAEQTAVGFHWDW |
Ga0207777_10423282 | 3300027330 | Tropical Forest Soil | DGLDGPIVQREPVVLDSQFAVHRYLRLAEKTTAGFHWDW |
Ga0209115_11295892 | 3300027567 | Forest Soil | GPIVEREPVALDSQFAVHRYLRLAEQTAVGFHWDW |
Ga0209517_106143241 | 3300027854 | Peatlands Soil | VWAVWDGMDGPIVERESVALDSQFAVHRYLRLAEKTTVGFHWDW |
Ga0209590_103696051 | 3300027882 | Vadose Zone Soil | VWDGMDGPIVERERVALDSQFAVHRYLRLAEKTAVGFHWDW |
Ga0302223_103124391 | 3300028781 | Palsa | DGLDGPIVEREHVALDSQFAVHRYLRLAEKTAAGFHWDW |
Ga0307306_100808311 | 3300028782 | Soil | VWDGMDGPIVERESVALDSQFAVHRYLRLAETTVVGFHWDW |
Ga0307312_111787111 | 3300028828 | Soil | PGNGVWAVWDGMDGPIIERESVALDSQFAVHRYLRLAETTVVGFHWDW |
Ga0308309_114170282 | 3300028906 | Soil | GPIVEREHVALDSQFAVHRYLRLAEKTAAGFHWDW |
Ga0311340_110562921 | 3300029943 | Palsa | SIVWAVWDGLDGPIVEREPAILDSQFAVHRYLRLAEQTAVGFHWDW |
Ga0302176_101885161 | 3300030057 | Palsa | LPGNVVWAVWDGMDGPIVEREPVVLDSQFAVHRYLRLAEKTVAGFHWDW |
Ga0311357_110320091 | 3300030524 | Palsa | VVWAVWDGMDGPIVEREPVVLDSQFAVHRYLRLAEKTVAGFHWDW |
Ga0302317_104190012 | 3300030677 | Palsa | WDGMDGPIVEREPVVLDSQFAVHRYLRLAEKTAVGSHWDW |
Ga0265462_111659453 | 3300030738 | Soil | DVVWAVWDGMDGPIVDRESVGLDSQFAVHRYLRLAEKTAVGFHWDW |
Ga0302325_103856963 | 3300031234 | Palsa | DGLDGPIVEREPAVLDSQFAVHRYLRLAEQTAVGFHWDW |
Ga0318541_103433061 | 3300031545 | Soil | DGPIVERENVALDSQFAVHRYLRLAEKTVVGFHWDW |
Ga0307508_108482842 | 3300031616 | Ectomycorrhiza | WAVWDGIDGPIAESERVTLDSQFAVHRYLRLAEQTTVGFHWDW |
Ga0318542_103078182 | 3300031668 | Soil | WDGMDGPIVERENVALDSQFAVHRYLRLAEKTAVGFHWDW |
Ga0318572_105944122 | 3300031681 | Soil | VWDGLDGPIVEREPVVLDSQFAVHRYLRLAEKTAVGFHWDW |
Ga0310686_1180179651 | 3300031708 | Soil | EWAVWDGLDGPIVEREPVALDSQFAVHRYLRLAEHTAAGFHWDW |
Ga0318493_106413502 | 3300031723 | Soil | PSSVVWAVWDGMDGPIVERENVALDSQFAVHRYLRLAEKTVVGFHWDW |
Ga0318548_103429191 | 3300031793 | Soil | KLPGSVVWAVWDGMDGPIIERENVSLDSQFAVHRYLRLAEKTAVGFHWDW |
Ga0318548_104528251 | 3300031793 | Soil | VVWAVWDGMDGPIVEREPVTLDSQFAVHRYLRLAEKTAVGFHWDW |
Ga0318565_101993721 | 3300031799 | Soil | LPGSVVWAVWDGMDGPIVERENVALDSQFAVHRYLRLAEKTVVGFHWDW |
Ga0318568_105704122 | 3300031819 | Soil | VWDGLDGPIVQREPVALDSQFAVHRYLRLAEKTAVGFHWDW |
Ga0307473_111247741 | 3300031820 | Hardwood Forest Soil | AVWDGMDGPIVEREDVALDSQFAVHRYLRLAETTVVGFHWDW |
Ga0318564_104442591 | 3300031831 | Soil | VPGNVEWAIWDGLDGPIVERERVDLDSQFAVHRYLRLAEKTAVGFHWDW |
Ga0310917_102913451 | 3300031833 | Soil | KLPGSVVWAVWDGMDGPIVERENVALDSQFAVHRYLRLAEKTVVGFHWDW |
Ga0310917_107286621 | 3300031833 | Soil | LDGPIVEREPVALDSQFAVHRYLRLAEKTAVGFHWDW |
Ga0318527_104734362 | 3300031859 | Soil | LDGPIVEREPVVLDSQFAVHRYLRLAEKTAVGFHWDW |
Ga0306919_103600571 | 3300031879 | Soil | EGSIVEREPVALDSQFAVHRYLRLAEKTAVGFHWDW |
Ga0306926_113859441 | 3300031954 | Soil | MDGPIVERENVALDSQFAVHRYLRLAEKTVVGFHWDW |
Ga0318562_106911881 | 3300032008 | Soil | VWDGLDGPIVQREPVVLDSQFAVHRYLRLAEQTAVGFHWDW |
Ga0318562_107048231 | 3300032008 | Soil | GSVVWAVWDGMDGPIVERENVALDSQFAVHRYLRLAEKTVVGFHWDW |
Ga0310911_102693932 | 3300032035 | Soil | LPSNVVWAVWDGMDGPIIERENVSLDSQFAVHRYLRLAEKTAVGFHWDW |
Ga0318559_102361251 | 3300032039 | Soil | WAVWDGLDGPIVQREPVALDSQFAVHRYLRLAEKTAVGFHWDW |
Ga0318556_104915122 | 3300032043 | Soil | GMDGPIVEREPVTLDSQFAVHRYLRLAEKTAVGFHWDW |
Ga0318505_100142053 | 3300032060 | Soil | VWDGLDGPIVEREPVALDSQFAVHRYLRLAERTAVGFHWDW |
Ga0318505_101616022 | 3300032060 | Soil | DGMDGPIVERENVALDSQFAVHRYLRLAEKTVVGFHWDW |
Ga0318514_104965782 | 3300032066 | Soil | VDWAVWDGLDGPIVEREPVVLDSQFAVHRYLRLAEKTAVGFHWDW |
Ga0318514_105279732 | 3300032066 | Soil | VWDGMDGPIVERENVALDSQFAVHRYLRLAEKTAVGFHWDW |
Ga0318524_105645182 | 3300032067 | Soil | GMDGPIIERESVMLDSQFAVHRYLRLAEKTAVGFHWDW |
Ga0306924_105091862 | 3300032076 | Soil | EWAVWDGLDGPIVERETVALDSQFAVHRYLRLAEKTAVGFHWDW |
Ga0335081_100594216 | 3300032892 | Soil | MDGPIVEREPVTLDSQFAVHRYLRLAEKTAVGFHWDW |
Ga0335077_102058311 | 3300033158 | Soil | WAVWDGMDGPIVERENVALDSQFAVHRYLRLAEKTVVGFHWDW |
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