NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F090748

Metagenome / Metatranscriptome Family F090748

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F090748
Family Type Metagenome / Metatranscriptome
Number of Sequences 108
Average Sequence Length 48 residues
Representative Sequence SSIMERYRDALGARKMVPQELARLGVGTSTKAGAGSKKNP
Number of Associated Samples 98
Number of Associated Scaffolds 108

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.93 %
% of genes near scaffold ends (potentially truncated) 97.22 %
% of genes from short scaffolds (< 2000 bps) 88.89 %
Associated GOLD sequencing projects 93
AlphaFold2 3D model prediction Yes
3D model pTM-score0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (73.148 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland
(14.815 % of family members)
Environment Ontology (ENVO) Unclassified
(46.296 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(39.815 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 29.41%    β-sheet: 0.00%    Coil/Unstructured: 70.59%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 108 Family Scaffolds
PF07992Pyr_redox_2 80.56
PF08713DNA_alkylation 8.33
PF00248Aldo_ket_red 0.93
PF03169OPT 0.93
PF07690MFS_1 0.93
PF02594DUF167 0.93
PF00890FAD_binding_2 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 108 Family Scaffolds
COG49123-methyladenine DNA glycosylase AlkDReplication, recombination and repair [L] 8.33
COG1297Predicted oligopeptide transporter, OPT familyGeneral function prediction only [R] 0.93
COG1872Uncharacterized conserved protein YggU, UPF0235/DUF167 familyFunction unknown [S] 0.93


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A73.15 %
All OrganismsrootAll Organisms26.85 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001154|JGI12636J13339_1010208Not Available1451Open in IMG/M
3300001170|JGI12704J13340_1003041All Organisms → cellular organisms → Bacteria1819Open in IMG/M
3300004152|Ga0062386_101647857Not Available535Open in IMG/M
3300005559|Ga0066700_10715344Not Available685Open in IMG/M
3300005591|Ga0070761_10074604All Organisms → cellular organisms → Bacteria → Acidobacteria1927Open in IMG/M
3300005995|Ga0066790_10051140All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1787Open in IMG/M
3300006050|Ga0075028_101070455Not Available505Open in IMG/M
3300006052|Ga0075029_100160150All Organisms → cellular organisms → Bacteria1388Open in IMG/M
3300006059|Ga0075017_101011093Not Available648Open in IMG/M
3300006102|Ga0075015_100069051All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1716Open in IMG/M
3300006174|Ga0075014_100422489Not Available731Open in IMG/M
3300006893|Ga0073928_10998378Not Available570Open in IMG/M
3300009089|Ga0099828_11814804Not Available535Open in IMG/M
3300009519|Ga0116108_1230510Not Available541Open in IMG/M
3300009523|Ga0116221_1515974All Organisms → cellular organisms → Eukaryota524Open in IMG/M
3300009525|Ga0116220_10293297Not Available715Open in IMG/M
3300009635|Ga0116117_1167021Not Available572Open in IMG/M
3300009637|Ga0116118_1150961Not Available750Open in IMG/M
3300009638|Ga0116113_1135341Not Available610Open in IMG/M
3300009643|Ga0116110_1212067Not Available626Open in IMG/M
3300009643|Ga0116110_1261547Not Available553Open in IMG/M
3300009644|Ga0116121_1138741Not Available767Open in IMG/M
3300009700|Ga0116217_10282256All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR121071Open in IMG/M
3300009764|Ga0116134_1252752Not Available608Open in IMG/M
3300009824|Ga0116219_10178093Not Available1223Open in IMG/M
3300010159|Ga0099796_10477549Not Available557Open in IMG/M
3300010339|Ga0074046_10638472Not Available628Open in IMG/M
3300010339|Ga0074046_10936939Not Available501Open in IMG/M
3300010379|Ga0136449_102513406Not Available738Open in IMG/M
3300010379|Ga0136449_103574743Not Available590Open in IMG/M
3300012096|Ga0137389_10212525All Organisms → cellular organisms → Bacteria → Acidobacteria1615Open in IMG/M
3300012202|Ga0137363_10549978Not Available972Open in IMG/M
3300012205|Ga0137362_10252441Not Available1524Open in IMG/M
3300012582|Ga0137358_11034300Not Available529Open in IMG/M
3300012923|Ga0137359_11723032Not Available514Open in IMG/M
3300014156|Ga0181518_10431100Not Available633Open in IMG/M
3300014159|Ga0181530_10245367Not Available962Open in IMG/M
3300014159|Ga0181530_10440754Not Available657Open in IMG/M
3300014162|Ga0181538_10699617Not Available525Open in IMG/M
3300014199|Ga0181535_10500174Not Available703Open in IMG/M
3300014491|Ga0182014_10112163All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis1614Open in IMG/M
3300014502|Ga0182021_12867896Not Available578Open in IMG/M
3300014638|Ga0181536_10234568Not Available889Open in IMG/M
3300014638|Ga0181536_10316744Not Available720Open in IMG/M
3300014657|Ga0181522_10506399All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae728Open in IMG/M
3300015053|Ga0137405_1320868All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2066Open in IMG/M
3300017823|Ga0187818_10026787All Organisms → cellular organisms → Bacteria → Acidobacteria2467Open in IMG/M
3300017935|Ga0187848_10316883Not Available649Open in IMG/M
3300017938|Ga0187854_10117702All Organisms → cellular organisms → Eukaryota1231Open in IMG/M
3300017938|Ga0187854_10279065Not Available718Open in IMG/M
3300017938|Ga0187854_10486197Not Available513Open in IMG/M
3300017941|Ga0187850_10081736Not Available1595Open in IMG/M
3300017995|Ga0187816_10026441All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis2322Open in IMG/M
3300018013|Ga0187873_1286254Not Available606Open in IMG/M
3300018022|Ga0187864_10404678Not Available587Open in IMG/M
3300018024|Ga0187881_10213743Not Available817Open in IMG/M
3300018025|Ga0187885_10182331All Organisms → cellular organisms → Eukaryota980Open in IMG/M
3300018026|Ga0187857_10263448Not Available792Open in IMG/M
3300018033|Ga0187867_10042379All Organisms → cellular organisms → Bacteria → Acidobacteria2771Open in IMG/M
3300018035|Ga0187875_10042457All Organisms → cellular organisms → Bacteria → Acidobacteria2678Open in IMG/M
3300018046|Ga0187851_10042414All Organisms → cellular organisms → Bacteria3017Open in IMG/M
3300018047|Ga0187859_10006944All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis6657Open in IMG/M
3300018047|Ga0187859_10332733Not Available826Open in IMG/M
3300018086|Ga0187769_11005230Not Available631Open in IMG/M
3300019242|Ga0181502_1425156Not Available550Open in IMG/M
3300019788|Ga0182028_1449208Not Available1718Open in IMG/M
3300020004|Ga0193755_1053925All Organisms → cellular organisms → Bacteria1311Open in IMG/M
3300020199|Ga0179592_10098947Not Available1340Open in IMG/M
3300020199|Ga0179592_10242397Not Available811Open in IMG/M
3300021478|Ga0210402_11223565Not Available678Open in IMG/M
3300021478|Ga0210402_11581860Not Available582Open in IMG/M
3300022521|Ga0224541_1019536Not Available728Open in IMG/M
3300022530|Ga0242658_1104525Not Available683Open in IMG/M
3300022873|Ga0224550_1028540Not Available792Open in IMG/M
3300023250|Ga0224544_1018034Not Available970Open in IMG/M
3300025404|Ga0208936_1043142Not Available608Open in IMG/M
3300025414|Ga0208935_1044408Not Available592Open in IMG/M
3300025442|Ga0208034_1009154All Organisms → cellular organisms → Bacteria → Acidobacteria3485Open in IMG/M
3300025500|Ga0208686_1133864Not Available507Open in IMG/M
3300026294|Ga0209839_10069059Not Available1244Open in IMG/M
3300026354|Ga0257180_1000196All Organisms → cellular organisms → Bacteria → Acidobacteria3184Open in IMG/M
3300026360|Ga0257173_1064661Not Available534Open in IMG/M
3300027394|Ga0209904_1001219All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis2199Open in IMG/M
3300027590|Ga0209116_1113025Not Available596Open in IMG/M
3300027625|Ga0208044_1201483Not Available531Open in IMG/M
3300027641|Ga0208827_1175347Not Available582Open in IMG/M
3300027692|Ga0209530_1222235Not Available517Open in IMG/M
3300027696|Ga0208696_1288516Not Available504Open in IMG/M
3300027812|Ga0209656_10135355Not Available1252Open in IMG/M
3300027829|Ga0209773_10431313Not Available545Open in IMG/M
3300027853|Ga0209274_10052846All Organisms → cellular organisms → Bacteria → Acidobacteria1931Open in IMG/M
3300027902|Ga0209048_10392140Not Available954Open in IMG/M
3300027911|Ga0209698_10997418Not Available624Open in IMG/M
3300029882|Ga0311368_10920720Not Available584Open in IMG/M
3300029943|Ga0311340_10229654All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis1834Open in IMG/M
3300029984|Ga0311332_11511604Not Available544Open in IMG/M
3300030053|Ga0302177_10195901Not Available1116Open in IMG/M
3300030058|Ga0302179_10121987Not Available1150Open in IMG/M
3300030618|Ga0311354_11673674Not Available557Open in IMG/M
3300030659|Ga0316363_10285724Not Available663Open in IMG/M
3300031028|Ga0302180_10083399All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1856Open in IMG/M
3300031234|Ga0302325_10224124All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis3186Open in IMG/M
3300031754|Ga0307475_10727219Not Available790Open in IMG/M
3300032160|Ga0311301_10257022All Organisms → cellular organisms → Bacteria → Acidobacteria2869Open in IMG/M
3300032828|Ga0335080_10853790Not Available937Open in IMG/M
3300032829|Ga0335070_11546781Not Available604Open in IMG/M
3300033405|Ga0326727_10767914All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae752Open in IMG/M
3300033822|Ga0334828_165953Not Available502Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland14.81%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland11.11%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil10.19%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil9.26%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog7.41%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa6.48%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds5.56%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil4.63%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil3.70%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil3.70%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil2.78%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.85%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.85%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil1.85%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen1.85%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil1.85%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil1.85%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment0.93%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.93%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.93%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.93%
Thawing PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost0.93%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog0.93%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen0.93%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.93%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001154Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1EnvironmentalOpen in IMG/M
3300001170Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005995Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050EnvironmentalOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006102Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013EnvironmentalOpen in IMG/M
3300006174Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014EnvironmentalOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009519Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150EnvironmentalOpen in IMG/M
3300009523Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaGEnvironmentalOpen in IMG/M
3300009525Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaGEnvironmentalOpen in IMG/M
3300009635Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10EnvironmentalOpen in IMG/M
3300009637Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40EnvironmentalOpen in IMG/M
3300009638Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10EnvironmentalOpen in IMG/M
3300009643Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40EnvironmentalOpen in IMG/M
3300009644Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10EnvironmentalOpen in IMG/M
3300009700Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaGEnvironmentalOpen in IMG/M
3300009764Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40EnvironmentalOpen in IMG/M
3300009824Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaGEnvironmentalOpen in IMG/M
3300010159Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3EnvironmentalOpen in IMG/M
3300010339Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300014156Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaGEnvironmentalOpen in IMG/M
3300014159Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaGEnvironmentalOpen in IMG/M
3300014162Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaGEnvironmentalOpen in IMG/M
3300014199Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaGEnvironmentalOpen in IMG/M
3300014491Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaGEnvironmentalOpen in IMG/M
3300014502Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014638Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaGEnvironmentalOpen in IMG/M
3300014657Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaGEnvironmentalOpen in IMG/M
3300015053Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300017823Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3EnvironmentalOpen in IMG/M
3300017935Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40EnvironmentalOpen in IMG/M
3300017938Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150EnvironmentalOpen in IMG/M
3300017941Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150EnvironmentalOpen in IMG/M
3300017995Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1EnvironmentalOpen in IMG/M
3300018013Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100EnvironmentalOpen in IMG/M
3300018022Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40EnvironmentalOpen in IMG/M
3300018024Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100EnvironmentalOpen in IMG/M
3300018025Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100EnvironmentalOpen in IMG/M
3300018026Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100EnvironmentalOpen in IMG/M
3300018033Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10EnvironmentalOpen in IMG/M
3300018035Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10EnvironmentalOpen in IMG/M
3300018046Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10EnvironmentalOpen in IMG/M
3300018047Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10EnvironmentalOpen in IMG/M
3300018086Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MGEnvironmentalOpen in IMG/M
3300019242Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019788Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300020004Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2EnvironmentalOpen in IMG/M
3300020199Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300022521Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 20-24EnvironmentalOpen in IMG/M
3300022530Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022873Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 10-14EnvironmentalOpen in IMG/M
3300023250Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 10-14EnvironmentalOpen in IMG/M
3300025404Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10 (SPAdes)EnvironmentalOpen in IMG/M
3300025414Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10 (SPAdes)EnvironmentalOpen in IMG/M
3300025442Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100 (SPAdes)EnvironmentalOpen in IMG/M
3300025500Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40 (SPAdes)EnvironmentalOpen in IMG/M
3300026294Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)EnvironmentalOpen in IMG/M
3300026354Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-BEnvironmentalOpen in IMG/M
3300026360Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-BEnvironmentalOpen in IMG/M
3300027394Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 712P3DEnvironmentalOpen in IMG/M
3300027590Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027625Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027641Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027692Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027696Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027812Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027829Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027853Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)EnvironmentalOpen in IMG/M
3300027902Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)EnvironmentalOpen in IMG/M
3300027911Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300029882III_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300029943I_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300029984I_Fen_E1 coassemblyEnvironmentalOpen in IMG/M
3300030053Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2EnvironmentalOpen in IMG/M
3300030058Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1EnvironmentalOpen in IMG/M
3300030618II_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030659Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)EnvironmentalOpen in IMG/M
3300031028Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2EnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300032829Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3EnvironmentalOpen in IMG/M
3300033405Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MYEnvironmentalOpen in IMG/M
3300033822Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 5-9EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12636J13339_101020813300001154Forest SoilSIMERYRDALGARKMIPQELARLGVGTSIKHAASTKKSP*
JGI12704J13340_100304113300001170Forest SoilASSIMERYRDALGARKMVPQELARLGVGTSAKTSTGATTKAAGSNKKSP*
Ga0062386_10164785713300004152Bog Forest SoilEPIFHAASEIMEGYRDALGARKMVPEELARLKPPLKHGTPAKAGAGGKKNP*
Ga0066700_1071534413300005559SoilPIFHAASSIMERYRDALGARKMIPQELARLGVGIATKQAAGTKKSP*
Ga0070761_1007460413300005591SoilSIMERYRDALGARKMVPQELARLGVGTSAKTSTGTTTKAAGSNKKSP*
Ga0066790_1005114013300005995SoilYEPIFHAASSIMEHYRDALGARKTVPQELAHMGVGNASKPGAATKKHP*
Ga0075028_10107045523300006050WatershedsLLIGHYRDALGVRRMVPQELARLGPATAVKKNTGAKKNP*
Ga0075029_10016015013300006052WatershedsIFHAASSLMERYRDALGARKMVPQELARLGVGASTKASAGKKSP*
Ga0075017_10101109323300006059WatershedsYEPVFRAASSIMEHYRDALGARKMVPQELARLGVGSSAKAAVGNKKSP*
Ga0075015_10006905113300006102WatershedsPIFRAASSIMERYRDALGARKMVPQELARLGVGTSAKSGAASKKDP*
Ga0075014_10042248913300006174WatershedsSIMERYREALGARKLVTQELARLGVGTTPKAGAGAAKKP*
Ga0073928_1099837813300006893Iron-Sulfur Acid SpringAASSIMERYRDALGARKMIPQELARLGVGTSTRTPTKVGGRSKKSR*
Ga0099828_1181480413300009089Vadose Zone SoilRFGKASVVLARCGGEEGGAATDQSKYEPIFTAASSIMERYRGAIGARKMVPGELARLGVGIPSVSSNKAAAGVKKQR*
Ga0116108_123051013300009519PeatlandRYRDALGARKMVPEELARLGVGTSVRTTTKAGAGSKKNP*
Ga0116221_151597413300009523Peatlands SoilSIMERYRDALGARKMVPQELAHLRAGSSAKAAGGSKKNNE*
Ga0116220_1029329723300009525Peatlands SoilARCGGAEGNPTTDQSAYEPIFHAASSIMERYRDALGARKMVPQELAHLGVKTSTSTTTKAAGSKKNP*
Ga0116117_116702123300009635PeatlandAYESIFRSASAILNRYRDALGVRKTVPQELARLGVGTPPKAVRDRKKKP*
Ga0116118_115096123300009637PeatlandVYEPIFHAASSIMEHYRDALGARKMVPQELARLGAGTSTKAGAGRKKNP*
Ga0116113_113534123300009638PeatlandAYEPIFHAASSIMERYRDALGARKMVPEELARLGVATPPKASSGKKKSP*
Ga0116110_121206723300009643PeatlandSSIMERYRDALGARKLVPEELARLGVRSSTKAGVGNKKNP*
Ga0116110_126154713300009643PeatlandYRDALGARKLVPEELARLGVGTSVRTTTKAGASSKKNP*
Ga0116121_113874113300009644PeatlandAASSIMERYRDALGARKMVPQELAHLGVGASTKSGAGSKKNP*
Ga0116217_1028225623300009700Peatlands SoilAYEPIFRAASSIMERYRAALGARKMVPQELARLGVGTSTGTTAKSGGGSKKNP*
Ga0116134_125275213300009764PeatlandHAASSIMERYRDALGARKLVPEELARLGVRSSTKAGVGNKKNP*
Ga0116219_1017809323300009824Peatlands SoilDALGARKLVPEELARLGVGTSVRTTTKAGAGSKKNP*
Ga0099796_1047754923300010159Vadose Zone SoilASSIMSRYRDELGVRRMVPQELARLGWGAKSRPVAAKKSP*
Ga0074046_1063847213300010339Bog Forest SoilASSIMERYRDALSARKMVPEELTRLGVKNGAGSPAKAGTKKNP*
Ga0074046_1093693923300010339Bog Forest SoilTDQSMFELIFRAASSIMERYRDALGARKMVPQELARLGVRSAAKTTTTKAEAGHKKKP*
Ga0136449_10251340613300010379Peatlands SoilRYRDALGARKLVPEELARLGVRSSTKAGVGNKKNP*
Ga0136449_10357474313300010379Peatlands SoilEPIFHAASSIMERYRDALGARKLVPEELARLGVGTSVRTTTKAGAGSKKNP*
Ga0137389_1021252513300012096Vadose Zone SoilPATDQSAYEPIFHAASSIMERYRAALGARKMVPQELARLGVGSSTKASAGSKKNP*
Ga0137363_1054997813300012202Vadose Zone SoilSSFMERYRDVLGARKMIPQELARLGVGTATKQAAGVKKSP*
Ga0137362_1025244133300012205Vadose Zone SoilKLERFGKASVALARCSGGEGGPATDQSAYEPIFHAASSIMEGYRDALGARKMIPQELARLGVGTSTRTPTKVGAGSKKSP*
Ga0137358_1103430023300012582Vadose Zone SoilHAASSIMERYRDVLGARKMIPQELARLGVGTVAKQAASTKKSP*
Ga0137359_1172303213300012923Vadose Zone SoilKASVALARCSGGEGGPATDQSAYEPIFHAASSIMERYRDVLGARKMIPQELARLGVGTATKQAAGVKKSP*
Ga0181518_1043110013300014156BogMERYRDALGARKMVPQELAHLGVGASTKSGAGSKKNP*
Ga0181530_1024536713300014159BogRAASSIMERYRDALGARKMVPQELARLGAGTSAKSGTASKKTP*
Ga0181530_1044075423300014159BogLYRDALGARKLVPEELARLGVGTSVRTTTKAGASSKKNP*
Ga0181538_1069961713300014162BogPIFRAASSIMERYRDVLGARKMVPEELARLGVGSATKTATKSGAGSKKNP*
Ga0181535_1050017423300014199BogAASAIMERYRDALGVRKTVPQELARLGVKTSTKTPAKAAGSKKDP*
Ga0182014_1011216313300014491BogTGEEGSPATDQTAYEPIFHAASSIMERYRDALGARKMVPEELAHLGARASTKADAVGKKNP*
Ga0182021_1286789613300014502FenRAASSIMERYRDALGARKMVPQELAQLGVGTSSRTTPKAGAGGKKNP*
Ga0181536_1023456813300014638BogQTAYEPIFHAASSIMERYRDALGARKMVPQELARLGVGTSTRTTTKSGAGGKKNQ*
Ga0181536_1031674413300014638BogERYRDALGARKLVPEELARLGVGTSVRKSVGTATKAGAGSKKNP*
Ga0181522_1050639933300014657BogRDALGARKMVPQELARLGVGTSARTPAKAGAGSKKKP*
Ga0137405_132086833300015053Vadose Zone SoilMSRYRDGLGVRRMVPQELARLGWGTTAKAGAGKKSQ*
Ga0187818_1002678713300017823Freshwater SedimentIFHAASSIMSHYRDVLGARRTVPQELMRLGAVGASKPAGSAKKVP
Ga0187848_1031688313300017935PeatlandAYEPIFHAASSIMERYRDALGARKLVPEELARLGVGTSVRKSVGTATKAGAGSKKNP
Ga0187854_1011770213300017938PeatlandATDQSAYEPIFHAASSIMERYRDALGARKLVPEELARLGVRSSTKAGVGNKKNP
Ga0187854_1027906513300017938PeatlandYRDALGARKLVPEELARLGVGTSVRTTTKAGASSKKNP
Ga0187854_1048619713300017938PeatlandQSAYEPIFHAASSIMERYRDALGARKLVPEELARLGVGTSVRTTTKAGAGSKKNP
Ga0187850_1008173623300017941PeatlandVKLERFGKSSVVLTRCAGAEGNPATDQSVYEPIFHAASSIMEHYRDALGARKMVPQELARLGAGTSTKAGAGRKKNP
Ga0187816_1002644113300017995Freshwater SedimentPIFRAASSSRERYRDALGARKIVPQELARLGVGTSAKSNSVSKKNP
Ga0187873_128625413300018013PeatlandTMERYRDALGARKLVPEELARLGVGTSVRTTTKAGAGSKKNP
Ga0187864_1040467823300018022PeatlandGAEGTPVTDQSAYEAIFQSASSIMERYRDALGARKMVPQELTRLGVRTSGKTTTTKAAGSKKNP
Ga0187881_1021374313300018024PeatlandEPIFHAASSIMERYRDALGARKMVPQELARLGVGTSTKAGAGRKKNP
Ga0187885_1018233113300018025PeatlandDALGARKLVPEELARLGVGTSVRTTTKAGAGSKKNP
Ga0187857_1026344823300018026PeatlandSSIMERYRDALGARKMVPEELARLGVATPPKASSGKKKSP
Ga0187867_1004237913300018033PeatlandEGSPAADQTAYEPIFHAASSIMELYRDAVGARKLVPEELARLGLGTSVRKSVGTATKAGAESKKNP
Ga0187875_1004245713300018035PeatlandHAASSIMERYRDALGARKLVPEELARLGVGTSVRKSVGTATKAGAGSKKNP
Ga0187851_1004241453300018046PeatlandGEEGSPTTDQSAYEPIFHAASSILERYRDALGARKTVPQELARLGPTSAVKTTTKASAAGTKDK
Ga0187859_1000694413300018047PeatlandASAILDRYRDALGVRRTVPQELTRLGVGTSTKAGAESKKKP
Ga0187859_1033273323300018047PeatlandSSIMERYRDALGARKMVPEELARLGVRSSAADSTKGAAGGKKNR
Ga0187769_1100523023300018086Tropical PeatlandDPIFGAASQILNRYRDALGVRKMVPQELARLGVGTSAKAGTPKKSP
Ga0181502_142515613300019242PeatlandSIFRSASAILNRYRDALGVRKTVPQELARLGVGTPPKAVRDRKKKP
Ga0182028_144920823300019788FenMERYRDALGARKTVPQELEHLGVKTSSGATTKAGAGSKKNR
Ga0193755_105392513300020004SoilSSIMSRYRDGLNVRRMVPQELARLGWGGSAKAGASTKKSP
Ga0179592_1009894713300020199Vadose Zone SoilSATTDQSKYEPIFTAASSIMERYRGAIGARKMVPSELARLGVGIPSVSSNKAAAGVKKQP
Ga0179592_1024239713300020199Vadose Zone SoilAYGPIFKAASSIMSRYRDELGVRRMVPQELARLGWGAKSRPVAAKKSP
Ga0210402_1122356513300021478SoilEPIFHAASSIMERYRDALGARKMVPQELTRMGVGVPKRAAAEGKKTK
Ga0210402_1158186013300021478SoilEPIFIAASSIMERYRDALGARKMIPQELARMGVGTAAKQAASTKKSP
Ga0224541_101953613300022521SoilYRDALGARKMVPEELARMGVGRPTGTMAKPGSKKNP
Ga0242658_110452513300022530SoilLHAASSIMERYREALVARKLVPQELARLGVGSKPGPSTKAGGKANDKKQP
Ga0224550_102854013300022873SoilAASSIMERYRDALGARKMVPEELARMGVGRPTGTAAKPGSKKNP
Ga0224544_101803423300023250SoilRDALGARKMVPEELARMGVGRPTGTTAKPGSRKNP
Ga0208936_104314213300025404PeatlandAYEPIFHAASSIMERYRDALGARKMVPEELARLGVATPPKASSGKKKSP
Ga0208935_104440823300025414PeatlandRDASSIMERYRDALGARKMVPEELARLGVRTSAGDSTKGAAGGKKNR
Ga0208034_100915413300025442PeatlandEPIFHAASSIMERYRDALGARKMVPQELARLGVGTSTKAGAGSKKNK
Ga0208686_113386413300025500PeatlandFRAASSIMERYRDALGARKMVPQELARLGAGTSAKSGTASKKTP
Ga0209839_1006905923300026294SoilSGEDGSPVTDQSAYEPIFHAASSIMEHYRDALGARKTVPQELAHMGVGNASKPGAATKKH
Ga0257180_100019613300026354SoilHAASSIMERYRDALGARKMIPQELARLGVGTSTRTPTKAGAGSKKNP
Ga0257173_106466123300026360SoilLARCAGGEGNPATDQSAYEPIFHAASSIMERYRAALGARKMVPQELTRLGVGSSTKASAGSKKNP
Ga0209904_100121913300027394Thawing PermafrostIMERYRDALGARKMVPQELAHLRAGSSAKAAGGSKKNNK
Ga0209116_111302523300027590Forest SoilRYRDALGARKMVPQELARLGVGTSAKTSTGATTKAAGSNKKSP
Ga0208044_120148313300027625Peatlands SoilSSIMERYRDALGARKMVPQELARLGVGTSTKAGAGSKKNP
Ga0208827_117534723300027641Peatlands SoilIFHAASSIMERYRDALGARKMVPQELAHLGVKTSTTTTTKAAGSKKNP
Ga0209530_122223513300027692Forest SoilARCSGDEGTPVTDQSAYEPIFKTASSIMERYRDALNARKMVPEELARLGVKTAANAKTGSVSKKNP
Ga0208696_128851613300027696Peatlands SoilASSIMERYRDALGTRKLVPEELARLGVGTSVRTTTKAGAGSKKNP
Ga0209656_1013535513300027812Bog Forest SoilSSIMERYRDALGARKMVPQELAHLGVGSMTKAVGGSKKQQ
Ga0209773_1043131313300027829Bog Forest SoilPVTDQSAYEPIFKTASSIMERYRDALNARKMVPEELARLGVKTAANAKTGSVSKKNP
Ga0209274_1005284633300027853SoilSIMERYRDALGARKMVPQELARLGVGTSAKTSTGTTTKAAGSNKKSP
Ga0209048_1039214023300027902Freshwater Lake SedimentMYEPIFHAASSIMARYRDALGASKLIPQELARLGVGTSIRTTTKAGAGSKKAP
Ga0209698_1099741823300027911WatershedsAILSHYRDALGVRRMIPQELARLGVKTSAKAGATKKNP
Ga0311368_1092072013300029882PalsaRYRDALGARKMVPQELAHLGVASTRASADGDAKSKR
Ga0311340_1022965413300029943PalsaERYRDALGARKMVPEELARMGVGRPTGTAAKPGSKKNP
Ga0311332_1151160423300029984FenVEGNPATDQTAYEPIFHAASSIMERYRDALGARKTVPQELEHLGVKTSSGATTKAGAGSKKNR
Ga0302177_1019590113300030053PalsaGPATDQSAYEPILQSASSIMQRYRDALGARKMVPQELAHLGVASTRASADGDAKSKR
Ga0302179_1012198713300030058PalsaYEPIFQSASSIMQRYRDALGARKMVPQELAHLGVASTRASADGDAKSKR
Ga0311354_1167367423300030618PalsaTASSIMERYRDALNARKMVPEELARLGVKTATKTGSASKKNP
Ga0316363_1028572413300030659Peatlands SoilAASEVLNRYRDALGVRRMVPQELVRLGVGTSTKAGGTKKTP
Ga0302180_1008339933300031028PalsaEGTPATDQSAYEPIFKTASSIMERYRDALNARKMVPEELARLGVKTATKTGSASKKNP
Ga0302325_1022412413300031234PalsaSIMERYRDALGARKMVPEELARMGVGRPTGTMAKPGSKKNP
Ga0307475_1072721913300031754Hardwood Forest SoilEPIFHAASSIMERYRDALGARKMIPQELARLGMGTATKQAAGTKKSP
Ga0311301_1025702243300032160Peatlands SoilEPIFHAASSIMERYREALGARKMVPQELARLGVRTSTRTTKPGSGSKKNP
Ga0335080_1085379023300032828SoilPIFREATAVLNRYRDALGVRKMVPQELERMGAGPAKKGTSTAKPKP
Ga0335070_1154678113300032829SoilSALMSRYRDSLGVRRLVPQELARLGWGRSAKTNPASGKKTP
Ga0326727_1076791413300033405Peat SoilEGTPATDQSAYEPIFHAASSIMERYRDSLGARKLVPQELARLGVGTSVRPATKSGAGSKKKP
Ga0334828_165953_3_1673300033822SoilTAYEPIFHAAASIMERYRDALGARKMVPQELARMGVGTSARAPAKAGAGSKKNP


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