NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F090744

Metagenome / Metatranscriptome Family F090744

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F090744
Family Type Metagenome / Metatranscriptome
Number of Sequences 108
Average Sequence Length 58 residues
Representative Sequence YCIEHLGGYLVLSAGKNVYRLDRADLVHGFEGQRVVITGVLDPKLNQIHVLKIDLDDKP
Number of Associated Samples 98
Number of Associated Scaffolds 108

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 5.71 %
% of genes near scaffold ends (potentially truncated) 31.48 %
% of genes from short scaffolds (< 2000 bps) 30.56 %
Associated GOLD sequencing projects 92
AlphaFold2 3D model prediction Yes
3D model pTM-score0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (75.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(15.741 % of family members)
Environment Ontology (ENVO) Unclassified
(25.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(61.111 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 4.60%    β-sheet: 37.93%    Coil/Unstructured: 57.47%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.58
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 108 Family Scaffolds
PF01726LexA_DNA_bind 15.74
PF13231PMT_2 12.04
PF00535Glycos_transf_2 0.93
PF13305TetR_C_33 0.93
PF07167PhaC_N 0.93
PF00496SBP_bac_5 0.93
PF00116COX2 0.93
PF13349DUF4097 0.93
PF01425Amidase 0.93
PF13407Peripla_BP_4 0.93
PF00085Thioredoxin 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 108 Family Scaffolds
COG0154Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidaseTranslation, ribosomal structure and biogenesis [J] 0.93
COG1622Heme/copper-type cytochrome/quinol oxidase, subunit 2Energy production and conversion [C] 0.93
COG3243Poly-beta-hydroxybutyrate synthaseLipid transport and metabolism [I] 0.93
COG4263Nitrous oxide reductaseInorganic ion transport and metabolism [P] 0.93


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A75.00 %
All OrganismsrootAll Organisms25.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001166|JGI12694J13545_1016941All Organisms → cellular organisms → Bacteria707Open in IMG/M
3300004152|Ga0062386_101320907All Organisms → cellular organisms → Bacteria600Open in IMG/M
3300005187|Ga0066675_10192560All Organisms → cellular organisms → Bacteria1428Open in IMG/M
3300005434|Ga0070709_10411631Not Available1011Open in IMG/M
3300005436|Ga0070713_100479213All Organisms → cellular organisms → Bacteria1172Open in IMG/M
3300005437|Ga0070710_10050786All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2326Open in IMG/M
3300005447|Ga0066689_10992468All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia517Open in IMG/M
3300006174|Ga0075014_100499900All Organisms → cellular organisms → Bacteria680Open in IMG/M
3300006175|Ga0070712_100840291All Organisms → cellular organisms → Bacteria789Open in IMG/M
3300010048|Ga0126373_12139538All Organisms → cellular organisms → Bacteria621Open in IMG/M
3300014489|Ga0182018_10478222All Organisms → cellular organisms → Bacteria660Open in IMG/M
3300017927|Ga0187824_10360917All Organisms → cellular organisms → Bacteria525Open in IMG/M
3300017930|Ga0187825_10075827Not Available1150Open in IMG/M
3300017943|Ga0187819_10276962All Organisms → cellular organisms → Bacteria978Open in IMG/M
3300020582|Ga0210395_11445763All Organisms → cellular organisms → Bacteria501Open in IMG/M
3300020583|Ga0210401_10973016All Organisms → cellular organisms → Bacteria707Open in IMG/M
3300021168|Ga0210406_11007323All Organisms → cellular organisms → Bacteria619Open in IMG/M
3300021401|Ga0210393_10474657All Organisms → cellular organisms → Bacteria1021Open in IMG/M
3300021478|Ga0210402_11482321All Organisms → cellular organisms → Bacteria606Open in IMG/M
3300021559|Ga0210409_10044260All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis4210Open in IMG/M
3300021560|Ga0126371_10860600All Organisms → cellular organisms → Bacteria1051Open in IMG/M
3300026078|Ga0207702_11498478Not Available668Open in IMG/M
3300026984|Ga0208732_1030658Not Available504Open in IMG/M
3300027172|Ga0208098_1009226Not Available888Open in IMG/M
3300027882|Ga0209590_10794996All Organisms → cellular organisms → Bacteria601Open in IMG/M
3300028023|Ga0265357_1025986All Organisms → cellular organisms → Bacteria657Open in IMG/M
3300028906|Ga0308309_10166557All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis1787Open in IMG/M
3300029636|Ga0222749_10360195Not Available763Open in IMG/M
3300031090|Ga0265760_10321856All Organisms → cellular organisms → Bacteria550Open in IMG/M
3300031474|Ga0170818_111649169All Organisms → cellular organisms → Bacteria1153Open in IMG/M
3300031718|Ga0307474_10497603Not Available955Open in IMG/M
3300031718|Ga0307474_10836192All Organisms → cellular organisms → Bacteria728Open in IMG/M
3300031754|Ga0307475_11343264Not Available552Open in IMG/M
3300032805|Ga0335078_10405706All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1787Open in IMG/M
3300033475|Ga0310811_10925509All Organisms → cellular organisms → Bacteria781Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil15.74%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil7.41%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil6.48%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil5.56%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment5.56%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil5.56%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere5.56%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil4.63%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.70%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil3.70%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil3.70%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds2.78%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.78%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.78%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil2.78%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring1.85%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.85%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.85%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.85%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland0.93%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.93%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil0.93%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.93%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil0.93%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil0.93%
PalsaEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa0.93%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.93%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.93%
Plant RootsHost-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots0.93%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.93%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.93%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere0.93%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil0.93%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001166Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2EnvironmentalOpen in IMG/M
3300001356Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300004091Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005437Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaGEnvironmentalOpen in IMG/M
3300005447Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138EnvironmentalOpen in IMG/M
3300005533Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1EnvironmentalOpen in IMG/M
3300005537Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1EnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005542Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1EnvironmentalOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300006086Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013EnvironmentalOpen in IMG/M
3300006102Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013EnvironmentalOpen in IMG/M
3300006174Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014EnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006794Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107EnvironmentalOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300007982Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009523Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaGEnvironmentalOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010880Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300014489Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaGEnvironmentalOpen in IMG/M
3300014655Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaGEnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017927Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4EnvironmentalOpen in IMG/M
3300017930Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300017995Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1EnvironmentalOpen in IMG/M
3300018034Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10EnvironmentalOpen in IMG/M
3300018088Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MGEnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021377Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7Host-AssociatedOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021445Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaGEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022732Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU1Host-AssociatedOpen in IMG/M
3300022733Soil microbial communities from Bohemian Forest, Czech Republic ? CSU3EnvironmentalOpen in IMG/M
3300025509Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026281Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)EnvironmentalOpen in IMG/M
3300026320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)EnvironmentalOpen in IMG/M
3300026984Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF048 (SPAdes)EnvironmentalOpen in IMG/M
3300027064Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF003 (SPAdes)EnvironmentalOpen in IMG/M
3300027172Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF038 (SPAdes)EnvironmentalOpen in IMG/M
3300027590Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027706Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)EnvironmentalOpen in IMG/M
3300027795Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027826Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027829Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027889Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)EnvironmentalOpen in IMG/M
3300028023Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5Host-AssociatedOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031090Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031821Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300033158Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1EnvironmentalOpen in IMG/M
3300033475Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YCEnvironmentalOpen in IMG/M
3300034124Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12694J13545_101694123300001166Forest SoilGTANTCSVYCIAHLGGYVVLSVGTDVYRLDRSDLVHGFEGQRVVISGVLDKKINQIHVQRIDLDEKH*
JGI12269J14319_1009813023300001356Peatlands SoilEHLGGYLVLSAGNDVYRLDRSDLVHGFEGQKVVITGTLDSKLKQIHVLKIELDEKQ*
JGIcombinedJ26739_10185131413300002245Forest SoilVLSVGNEVYRLDRADLVHGYEGRRVAVTGTLDNKLKQIHVVKIDLENKPLENKP*
JGIcombinedJ51221_1028230823300003505Forest SoilYCIEHLGGSLVLSAGKEVYRLDRPDLVHGFEGQKVKITGTLDPKVNQIHVMKIELEGQ*
Ga0062387_10128424313300004091Bog Forest SoilLGGYLVLSSTKDVFRIDRPDLVHGFEGQKVKLTGTLDPKLKQIHVLKIELESNK*
Ga0062389_10413250923300004092Bog Forest SoilYCIAHLGGYLVLSTDKDVFRLDRADLVHGFEGQKVKVTGSFEAKVKLIHVQKIELDHRQ*
Ga0062386_10132090723300004152Bog Forest SoilSNTCAVYCIEHLGGYLVLSAGKDVYRLDRPDLVHGFEGKRVKIIGTLDTKLKQIHVLTIDLEKNR*
Ga0062386_10153696513300004152Bog Forest SoilVYCIEHLGGYLVLSAGKDVYRLDRADLVHGFEGRRVKITGTLDPKLKQIHVLTIGLEKDR
Ga0066675_1019256023300005187SoilTSNTCSVYCIEHLGGYLVLSTAKDVFRLDRSDLVHGFEGRRVVIDGVLDPKLKQIHVLKIDLENKP*
Ga0070709_1041163123300005434Corn, Switchgrass And Miscanthus RhizosphereGTSNTCSVYCISRLGGTLVLSAGKNVYRLDRPDLVHGFEGQKVKITGTLDSKVNQIHVMKIELEDEQ*
Ga0070714_10188475023300005435Agricultural SoilHLGGYLVLSTAKDVFRLDRSDLVHGFEGRRVVIDGVLDPKLKQIHVLKIDLENKP*
Ga0070713_10047921313300005436Corn, Switchgrass And Miscanthus RhizosphereNTCAVYCIEHLGGYLVLSAGKDVFRLDRSDLVHGFEGRRVVLTGILDEKLKQIHVQKIDLEEKP*
Ga0070710_1005078643300005437Corn, Switchgrass And Miscanthus RhizosphereMGGTSNSCSVYCIEHLGGTLVLSASKDVYRLDRPDLVHGFEGQKVKVTGTLDSKLNQVHVIKIELENQ*
Ga0070710_1105491013300005437Corn, Switchgrass And Miscanthus RhizosphereGGYLVLSTAKDVFRLDRSDLVHGFEGRRVVINGVLDPKLKQIHVLKIDLENKP*
Ga0066689_1099246823300005447SoilSMGGTSNTCAVYCIEHLGGSLVLSAGKEVYRLDRPDLVHGFEGQRVKITGTLDSKVNLVHVMKIELEGQQ*
Ga0070734_1040886023300005533Surface SoilIDHLGGTLVLSAGKEVYRLDRPDLVHGFEGQKVKITGALDTKVNQIHVIKIELDGQE*
Ga0070730_1086878813300005537Surface SoilEHMGGYLVLSAGKDVYRLDRADLVHGFEGQKVRVTGVLDAKTNQIHVLKIELDPPK*
Ga0070731_1023575433300005538Surface SoilIEHLGGTLVLSAGKDVYRLDRPDLVHGFEGQKVKITGTLDTKLNQIHVVKIELESQE*
Ga0070732_1035366123300005542Surface SoilYCIEHLGGYLVLSAGKDVFRLDRSDLVHGFEGRRVVLTGVLDEKLKQIHVLKIDLDQKP*
Ga0070732_1093805313300005542Surface SoilYCIEHMGGYLVLSAGKDVYRLDRSDLVHGFEGRRVVLTGVLDTKLNQIHVLKIDLEEEKQ
Ga0070764_1052331413300005712SoilIQHLGGYLVLSAGKDGKDVYRLDRADLVHGFEGQRVKITGVLDPKANQIHVLRIEMEKPQ
Ga0075019_1092449413300006086WatershedsGYLVLSVGNNVYRLDRSDLVHGFEGRSVVITGVLDPKLKQIHVLKIDLEQKP*
Ga0075015_10063896123300006102WatershedsVLSSGKNVFRLDRADLVHGFEGQKVRLTGVLDPKLKEIHVLKIELEHNK*
Ga0075014_10049990023300006174WatershedsTCTVYCIEHLGGYLVLSVGNDVYRLDRSDLVHGFEGRKVIITGILDAKLKQIHVLKIDLEQ*
Ga0070712_10084029123300006175Corn, Switchgrass And Miscanthus RhizosphereSVYCIEHLGGYLVLSAGNNVYRLDRSDLVHGFEGRRVVITGILDAKLNQIHVQKIELEQKQ*
Ga0066658_1015474013300006794SoilCIEHLGGSLVLSAGKEVYRLDRPDLVHGFEGQRVKITGTLDSKVNLVHVMKIELEGQQ*
Ga0073928_1122588623300006893Iron-Sulfur Acid SpringYCIEHLGGYVVLSVGNDVYRLDRADLVHGYEGQRVVITGSLDEKLKQIHVVKIDLDH*
Ga0102924_133154313300007982Iron-Sulfur Acid SpringEHMGGYLVLSSGKDVYRLDRSDLVHGFEGRRVVLTGVLDTKLNQIHVLKIDLEEEKQ*
Ga0066709_10137670323300009137Grasslands SoilLGGYLVLSAGKNVYRLDRSDLVHGFEGRRVVVTGVLDSKLNQIHVLRIDLEEKP*
Ga0116221_150359623300009523Peatlands SoilGFLVLASGKDGKDVYRLDRPDLVHGFEGQKVVITGTLDGKTNMIHVVKIDLDERQ*
Ga0105237_1154015423300009545Corn RhizosphereEHFGGYLVLSTAKDVFRLDRSDLVHGFEGRRVVIDGVLDLKLKQIHVLKIDLESKP*
Ga0126373_1213953813300010048Tropical Forest SoilNTCSVYCIEHLGGYLVLSSGNNVYRLDRTDLVHGFEGRRVIVTGVLDGKINQIHVVKIELEEK*
Ga0136449_10301842513300010379Peatlands SoilTVYCVEHMGGFLVLASGKDGKDVYRLDRADLVHGFEGQKVVITGTLDSKTNMIHVLKIDLDERP*
Ga0126383_1241749513300010398Tropical Forest SoilYCIERLGGYLVLSSGKNVYRLDRADLVHGFEGQRVVINGVLDTKLNQIHVIKIDLEEKP*
Ga0126350_1163547223300010880Boreal Forest SoilCIAHLGGYLVLSFGNDVYRLDRADLVHGFEGERVVVTGTLDPKLKQLHVVRIALDNKR*
Ga0150983_1294996323300011120Forest SoilMYCIEHLGGYLVLSSGKDVFRLDRADLVHGFEGQRVKLTGVLDAKAKQIHVLKIELESLK
Ga0182018_1047822223300014489PalsaLVLVSGKDVFRLDRADLVHGYERQKVKLTGILDAKAKQIHIVKVELE*
Ga0181516_1015211813300014655BogGYLVLVSGKGGKDVFRLDRADLIHGFEGQKVKVTGVLDAKANQIHVLKIELENRN*
Ga0182034_1173132913300016371SoilCIEHLGGYLVLSAGKNVYRLDRADLIHGFEGHKVVISGVLDPKLNQIHVLKIELEQQP
Ga0182038_1064764223300016445SoilYCIEHLGGYLVLSAGKDVYRLDRTDMVHGFEGRRVVISGVLDPKLKQIHVIKIDLEEEKQ
Ga0187824_1036091713300017927Freshwater SedimentNTCSVYCIEHLGGYLVLSTAKDVFRLDRSDLVHGFEGRRVVIDGVLDPKLKQIHVLKIDLENKP
Ga0187825_1007582723300017930Freshwater SedimentGGTSNSCSVYCIEHLGGVLVLSAGKDVYRLDRPDLVHGFEGQKVKIVGTLDTKVNQIHVVKIELDGQ
Ga0187819_1027696223300017943Freshwater SedimentNTCSVYCIEHLGGYLVLSFGNNVYRLDRSDLVHGFEGRRVIITGVLDTKINQIHVVKIDLDEK
Ga0187817_1101475523300017955Freshwater SedimentLVLSVGKDGKDVYRLDRADLVHGFEGHRVILNGTLDPKLKQIHVLKIELDEK
Ga0187782_1007524343300017975Tropical PeatlandAVYCIEHLGGYLVLSAGKNVYRLDRADLVHGFEGHKVIITGVLDRKTNQIHVLKIDLDQR
Ga0187816_1015566813300017995Freshwater SedimentLVLSAGKDVYRLDRSDLVHGFEGHRVIINGVLDAKLKQIHVLKIELDEKQ
Ga0187816_1029896023300017995Freshwater SedimentGYLVLSAGNDVYRLDRADLVHGFEGRRVVITGVLDPKLKQIHVLKIDLEEKP
Ga0187863_1001830613300018034PeatlandYCIEHLGGYLVLSAGKNVYRLDRADLVHGFEGQRVAITGVLDTKLNQIHVLKIDLDDKP
Ga0187771_1004572823300018088Tropical PeatlandVYCIEHMGDYLVLSSGKDVYRLDRPDMVHGYEAHKVKITGVLDPKAKQIHVLKTDLEENQ
Ga0210403_1101817713300020580SoilCIEHMGGYLVLSSGNDVFRLDRADLVHGFEGQKVKLSGVLDPKLKQIHVLKIELVDSK
Ga0210395_1144576313300020582SoilTSNTCAVYCIEHLGGYLVLSSGKNVYRLDRADMVHGFEGRRVVINGVLDTKLNQIHVVKIDLDEGQ
Ga0210401_1075582713300020583SoilDYCIEHLGGTLVLAAGKDVYRLDRPDLVHGFEGQKVKITGTLDSKTNQVHVMKIELDN
Ga0210401_1097301623300020583SoilSNTCAVYCVEHLGGYLVLSAGNDVYRLDRADLVHGFEGRRVKITGTLDAKLKQIHVLKIDLENQP
Ga0210406_1100732323300021168SoilTSNTCSVYCVEHLGGYLVLSVGNDVYRLDRVDLVHGFEGRRVAITGTLDAKIKQIHVVKIELDEKP
Ga0213874_1042587623300021377Plant RootsTYCIEHLGGSLVLSAGKEVYRLDRPDLVHGFEGQKVKITGTLDSKVNQVHVIKIELEGQQ
Ga0210393_1011414333300021401SoilYLVLSSGKDGKDVFRLDRPDLVHGFEGQKVRLTGVLDNKLKQIHVLKIELESTR
Ga0210393_1047465723300021401SoilSNTCAVYCIENLGGYLILSAGKEAFRLDRSDLVHGFEGRRVKITGTLDPKLNQIHVLTIDLEQKQQ
Ga0210397_1136304623300021403SoilGYLVLSVGNDVYRLDRSDLVHGFEGQRVAITGILDPKLKTIHVQKIDLEQAP
Ga0210387_1011211013300021405SoilMYCIEHLGGYLVLVSGKDGKDVFRLDRPDLVHGFEGQKVKLTGTLDPKLKQIHVLKIELESTK
Ga0210386_1035917113300021406SoilVYCIEHMGGYLVLSSGNAVYRLDRPDLVHGFEGQKVRLTGVLDEKLKQIHVLKIDLGSAK
Ga0182009_1009142623300021445SoilIEHLGGYLVLSTAKDVFRLDRSDLVHGFEGRRVVIDGVLDPKLKQIHVLKIDLENKP
Ga0210390_1139392213300021474SoilCIEHLGGYLVLSVGNDVYRLDRSDLVHGFEGRKVMVTGVLDAKLKQIHVLKIDLEP
Ga0210402_1148232113300021478SoilSNTCSVYCIEHLGGYLVLSAGKNVYRLDRADLVHGFEGRRVVISGTLDPKLNQIHVLKIDLEEKP
Ga0210410_1117505313300021479SoilLVLSSGNDVLRLDRADLVHGFEGQKVKLTGILDAKAKQIHVLKIELESQK
Ga0210409_1004426053300021559SoilNTCAVYCIEHLGGYLVLSAGKNVYRLDRSDLVHGFEGRRVVVTGVLETKMNQIHVLKIDLEEKP
Ga0126371_1086060013300021560Tropical Forest SoilGTSSTCAMYCIEHLGGYLVLSAGKEVYRLDRSDLVHGFDGQKVVINGILDAKLNQIHVLKIDLDEK
Ga0224569_10384913300022732RhizosphereVLSSGNDVFRLDRADLVHGYEGQKVKLTGILDAKAKQIHVLKIELEDQK
Ga0224562_100584323300022733SoilYLVLSSGNDVFRLDRADLVHGYEGQKVKLTGILDAKAKQIHVLKIELEDQK
Ga0208848_100242413300025509Arctic Peat SoilYCIEHLGGYLVLSAGNDVYRLDRSDLVHGFEGRRVVINGTLDTKLKQIHVLKIDLEQRP
Ga0207665_1078267623300025939Corn, Switchgrass And Miscanthus RhizosphereLSTAKDVFRLDRSDLVHGFEGRRVVINGVLDPKLKQIHVLKIDLENKP
Ga0207702_1149847813300026078Corn RhizosphereTCSVYCIEHLGGYLVLSARNEVYRLDRSDLVHGFEGQRVIITGLLDAKTNKIRVLKIDLEMKR
Ga0209863_1001229443300026281Prmafrost SoilIEHLGGYLVLSVGNDVYRLDRADLVHGFEGQKVKVTGVLDTKLSLIHVQKVELEAEKP
Ga0209131_137462223300026320Grasslands SoilVLSSGNDVFRLDRADLVHGFEGQKVKLTGVLDVKAKQIHVLKIELEPAK
Ga0209152_1025851123300026325SoilYCIEHLGGSLVLSAGKEVYRLDRPDLVHGFEGQRVKITGTLDSKVNLVHVMKIELEGQQ
Ga0208732_103065823300026984Forest SoilSTCSMYCIEHLGGYLVLSSGKDVFRLDRADLVHGFEGQKVKLTGVLDAKAKQIHVLKIELESLK
Ga0208724_101200123300027064Forest SoilSSGKDGQDVFRLDRADLVHGFEGRKVKLTGILDSKVKQIHVLKIELESNK
Ga0208098_100922623300027172Forest SoilTCAVYCIEHLGGSLVLSAGKEVYRLDRPDLVHGFEGQKVKITGTLDPKVNQIHVMKIELEGQ
Ga0209116_105871013300027590Forest SoilYCIEHLGGYLVLSAGKNVYRLDRADLVHGFEGQRVVITGVLDPKLNQIHVLKIDLDDKP
Ga0209581_123140723300027706Surface SoilLVLSSGKEVYRLDRADLVHGFEGQRVVINGTLDTKLNQIHVLKIDLDDKK
Ga0209139_1012755023300027795Bog Forest SoilLVLSSGPDGTDVFRLDRPDLVHGFEGQKVKLTGVLDGKIKQIHVLKIELANSK
Ga0209060_1047013123300027826Surface SoilIDHLGGTLVLSAGKEVYRLDRPDLVHGFEGQKVKITGALDTKVNQIHVIKIELDGQE
Ga0209773_1019647723300027829Bog Forest SoilHLGGYLVLSSPNDVYRLDRADLVHGFEGQKVKVTGKVDPTTDVIHVQSIEEAKA
Ga0209590_1079499613300027882Vadose Zone SoilTSNTCSTYCIEHLGGYLVLSIGNDVYRLDRSDLVHGFEGRRVVITGVLDAKLKQIHVVKIDLDEKP
Ga0209380_1001981563300027889SoilTYCIEHLGGTLVLSAGKDVYKLDRPDLVHGFEGQKVKIVGTLDVKTNQIHVMKIELENQ
Ga0265357_102598623300028023RhizosphereCTMYCIEHLGGYLVLSSGNDVFRLDRSDLVHGFEGQKVKLTGTLNAKVKQIHVLKVELEDTK
Ga0308309_1016655733300028906SoilSNTCSTYCIEHLGGTLVLSAGKDVYKLDRPDLVHGFEGQKVKIVGTLDVKTNQIHVMKIELENQ
Ga0222749_1036019513300029636SoilNTCSTYCIEHLGGTLVLSAGKEVYRLDRPDLVHGFEGQKVKITGTLDTKVSQIHVIKIELESPE
Ga0265760_1032185623300031090SoilGTANTCSVYCIAHLGGYLVLSVGQDVYRLDRSDLVHGFEGQRVVISGVLDKKVNQIHVQKIDLDEKP
Ga0170824_10150815513300031231Forest SoilLGGYLVLSAGNDVYRLDRADLVHGFEGQKVKVTGVLDPKLNLIHVQKIELEVEKP
Ga0170824_10429535623300031231Forest SoilLVLSSGKDVFHLDRPDLVHGFEGEKVRVTGVLDAKAGHLHVLKIELEEE
Ga0170818_11164916913300031474Forest SoilGTANTCSVYCIDHLGGYLVLSAGDNVYRLDRSDLVHGFEGQKVKVTGILDTKANQIHVQKIELDEKP
Ga0170818_11520656913300031474Forest SoilSVYCIERLGGYLVLSAGNDVYRLDRSDMVHGFEGRRVVITGVLDPKLKQIHVLKIDLDEK
Ga0310686_10539280013300031708SoilHLGGYLVLSSGNDVYRLDRADLVHGFEGRRVKISGTLDPKLKQIHVLKIDLENQP
Ga0307476_1072124213300031715Hardwood Forest SoilLGGTLVLAAGKEVYRLDRPDLVHGFEGQKVKITGTLDSKTNQVHVMKIELDN
Ga0307474_1049760313300031718Hardwood Forest SoilTCSTYCIEHLGGTLVLSAGKDVYKLDRPDLVHGFEGQKVKIVGTLDVKTNQIHVMKIELENQ
Ga0307474_1083619213300031718Hardwood Forest SoilSVYCIEHLGGYLVLSAGKNVYRLDRSDLVHGFEGQRVVITGVLDPKLNQIHVLKIDLDDK
Ga0306918_1008765013300031744SoilGGTLVLSAGKDVYRLDRPDLVHGFEGQKVKIVGTLDSKANQIHVIKIELDGQ
Ga0307475_1134326423300031754Hardwood Forest SoilSNTCAVYCIEHLGGSLVLSAGKEVYRLDRPDLVHGFEGQRVKITGTLDSKVNLVHVMKIELEGQQ
Ga0318567_1042160013300031821SoilGTLVLSAGKDVYRLDRPDLVHGFEGQKVKIVGTLDSKANQIHVIKIELDGQ
Ga0307478_1108792113300031823Hardwood Forest SoilGGYLVLSSGKDVYRLDRADLVHGFEGQRVKITGVLDPKIKQIHVLKVEMEKPQ
Ga0310910_1082621323300031946SoilIEHLGGYLVLSAGKDVYRLDRTDMVHGFEGRRVVISGVLDPKLKQIHVIKIDLEEEKQ
Ga0311301_1147335613300032160Peatlands SoilLGGYLVLSAGNDVYRLDRSDLVHGFEGQKVVITGTLDSKLKQIHVLKIELDEKQ
Ga0311301_1173571913300032160Peatlands SoilHMGGFLVLASGKDGKDVYRLDRADLVHGFEGQKVVITGTLDSKTNMIHVLKIDLDERP
Ga0307470_1062392113300032174Hardwood Forest SoilSMYCIEHLGGYLVLSIGNDVYRLDRSDLVHGFEGRRVIITGVLDPKLKQIHVVKIDLEEK
Ga0335078_1040570613300032805SoilMGGTSNTCSVYCIEHLGGYLVLSAGKNVYRLDRPDLVHGFEGHHVLITGVLDTKLNEIHVLKID
Ga0335077_1154709623300033158SoilRLGGYLVLSSGNEVYRLDRSDLVHGFEGQKVVINGVLDTKLNEIHVLKIELDDKK
Ga0310811_1092550913300033475SoilSNTCSVYCIEHLGGYLVLSTAKDVFRLDRSDLVHGFEGRRVVIDGVLDPKLKQIHVLKIDLENKP
Ga0370483_0267948_381_5513300034124Untreated Peat SoilMYLGGYLVLAAGANVFRLDRPDLVHGFEGQKVKVTGVLDTKIKQIHVLKIELQNSR


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