Metagenome / Metatranscriptome Family F090739

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090739
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	68 residues
Representative Sequence	MHDADVIPPSVAGSLAEIERSVQRFRSCYSLGTDPERLLTDEIITMRVELIRLWSEINSDKKQRLRR
Number of Associated Samples	82
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	6.48 %
% of genes near scaffold ends (potentially truncated)	37.04 %
% of genes from short scaffolds (< 2000 bps)	79.63 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.66

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (53.704 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil (15.741 % of family members)
Environment Ontology (ENVO)	Unclassified (41.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (68.519 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.68% β-sheet: 0.00% Coil/Unstructured: 46.32%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.66
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.66
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF13676	TIR_2	16.67
PF01408	GFO_IDH_MocA	7.41
PF08734	GYD	2.78
PF07992	Pyr_redox_2	0.93
PF01381	HTH_3	0.93
PF09899	DUF2126	0.93
PF13231	PMT_2	0.93
PF03706	LPG_synthase_TM	0.93
PF02673	BacA	0.93
PF06439	3keto-disac_hyd	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	2.78
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	0.93
COG1968	Undecaprenyl pyrophosphate phosphatase	Lipid transport and metabolism [I]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.70 %
All Organisms	root	All Organisms	46.30 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.70 %
cellular organisms	root	All Organisms → cellular organisms	46.30 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.70 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	46.30 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.70 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	20.37 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.70 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	3.70 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.70 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	20.37 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	3.70 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.70 %
Candidatus Dadabacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria	3.70 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.78 %
Methylacidiphilae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.70 %
Candidatus Dadabacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria	3.70 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	2.78 %
Methylacidiphilales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae → Methylacidiphilales	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.70 %
Candidatus Dadabacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria	3.70 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2.78 %
Methylacidiphilaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae → Methylacidiphilales → Methylacidiphilaceae	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.70 %
Candidatus Dadabacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria	3.70 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.78 %
Candidatus Methylacidithermus	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae → Methylacidiphilales → Methylacidiphilaceae → Candidatus Methylacidithermus	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.70 %
Candidatus Dadabacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria	3.70 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	2.78 %
Candidatus Methylacidithermus pantelleriae	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae → Methylacidiphilales → Methylacidiphilaceae → Candidatus Methylacidithermus → Candidatus Methylacidithermus pantelleriae	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.70 %
Candidatus Dadabacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria	3.70 %
Streptomyces sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp.	2.78 %
Candidatus Methylacidithermus pantelleriae	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae → Methylacidiphilales → Methylacidiphilaceae → Candidatus Methylacidithermus → Candidatus Methylacidithermus pantelleriae	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459002\|FZY7DQ102HFS8B	Not Available	514	Open in IMG/M
2170459007\|GJ61VE201EF4R5	Not Available	509	Open in IMG/M
3300002245\|JGIcombinedJ26739_100804059	Not Available	821	Open in IMG/M
3300002245\|JGIcombinedJ26739_101080633	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	689	Open in IMG/M
3300002245\|JGIcombinedJ26739_101082843	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	688	Open in IMG/M
3300002245\|JGIcombinedJ26739_101088993	Not Available	686	Open in IMG/M
3300003218\|JGI26339J46600_10054523	Not Available	1061	Open in IMG/M
3300003219\|JGI26341J46601_10009167	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria	3246	Open in IMG/M
3300003219\|JGI26341J46601_10010800	All Organisms → cellular organisms → Bacteria	2992	Open in IMG/M
3300003219\|JGI26341J46601_10132977	Not Available	704	Open in IMG/M
3300003368\|JGI26340J50214_10048427	Not Available	1186	Open in IMG/M
3300004091\|Ga0062387_100489721	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	855	Open in IMG/M
3300004091\|Ga0062387_100782759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp.	709	Open in IMG/M
3300004092\|Ga0062389_101121150	Not Available	972	Open in IMG/M
3300004092\|Ga0062389_102316707	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	709	Open in IMG/M
3300004092\|Ga0062389_102890731	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	642	Open in IMG/M
3300004092\|Ga0062389_103628912	Not Available	579	Open in IMG/M
3300005332\|Ga0066388_106119606	Not Available	608	Open in IMG/M
3300005434\|Ga0070709_11638678	Not Available	524	Open in IMG/M
3300005435\|Ga0070714_101644592	Not Available	627	Open in IMG/M
3300005437\|Ga0070710_11496360	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	507	Open in IMG/M
3300005467\|Ga0070706_101931247	Not Available	535	Open in IMG/M
3300005471\|Ga0070698_101854483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp.	556	Open in IMG/M
3300005602\|Ga0070762_10395783	Not Available	889	Open in IMG/M
3300005712\|Ga0070764_10451295	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300005921\|Ga0070766_10438532	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp.	861	Open in IMG/M
3300006174\|Ga0075014_100718291	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300006893\|Ga0073928_11150987	Not Available	524	Open in IMG/M
3300010048\|Ga0126373_10599446	Not Available	1154	Open in IMG/M
3300010339\|Ga0074046_10086721	Not Available	2029	Open in IMG/M
3300010339\|Ga0074046_10095523	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria	1922	Open in IMG/M
3300010339\|Ga0074046_10098615	All Organisms → cellular organisms → Bacteria	1888	Open in IMG/M
3300010341\|Ga0074045_10169066	Not Available	1477	Open in IMG/M
3300010343\|Ga0074044_10018034	All Organisms → cellular organisms → Bacteria	5158	Open in IMG/M
3300010361\|Ga0126378_11061223	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	912	Open in IMG/M
3300010366\|Ga0126379_10695792	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1110	Open in IMG/M
3300010379\|Ga0136449_100118346	All Organisms → cellular organisms → Bacteria	5341	Open in IMG/M
3300010379\|Ga0136449_101250482	Not Available	1163	Open in IMG/M
3300010379\|Ga0136449_103081232	Not Available	648	Open in IMG/M
3300010857\|Ga0126354_1116319	Not Available	560	Open in IMG/M
3300010860\|Ga0126351_1112112	Not Available	637	Open in IMG/M
3300010865\|Ga0126346_1204138	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	506	Open in IMG/M
3300012685\|Ga0137397_11323988	Not Available	511	Open in IMG/M
3300012961\|Ga0164302_10499675	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae → Methylacidiphilales → Methylacidiphilaceae → Candidatus Methylacidithermus → Candidatus Methylacidithermus pantelleriae	858	Open in IMG/M
3300014162\|Ga0181538_10681814	Not Available	533	Open in IMG/M
3300014199\|Ga0181535_10082110	All Organisms → cellular organisms → Bacteria	2110	Open in IMG/M
3300016422\|Ga0182039_11122150	Not Available	709	Open in IMG/M
3300017975\|Ga0187782_10632300	Not Available	823	Open in IMG/M
3300018034\|Ga0187863_10139421	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1354	Open in IMG/M
3300020579\|Ga0210407_10714423	Not Available	776	Open in IMG/M
3300020582\|Ga0210395_10027212	All Organisms → cellular organisms → Bacteria	4196	Open in IMG/M
3300020582\|Ga0210395_11239233	Not Available	547	Open in IMG/M
3300021046\|Ga0215015_10263938	Not Available	2990	Open in IMG/M
3300021170\|Ga0210400_10575332	All Organisms → cellular organisms → Bacteria	929	Open in IMG/M
3300021178\|Ga0210408_10147954	All Organisms → cellular organisms → Bacteria	1859	Open in IMG/M
3300021180\|Ga0210396_10315988	Not Available	1381	Open in IMG/M
3300021181\|Ga0210388_10649253	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	921	Open in IMG/M
3300021358\|Ga0213873_10006317	Not Available	2325	Open in IMG/M
3300021358\|Ga0213873_10135496	Not Available	732	Open in IMG/M
3300021358\|Ga0213873_10300444	Not Available	518	Open in IMG/M
3300021361\|Ga0213872_10001838	All Organisms → cellular organisms → Bacteria	13150	Open in IMG/M
3300021361\|Ga0213872_10025948	All Organisms → cellular organisms → Bacteria	2692	Open in IMG/M
3300021361\|Ga0213872_10137832	Not Available	1072	Open in IMG/M
3300021372\|Ga0213877_10074298	Not Available	1007	Open in IMG/M
3300021372\|Ga0213877_10236174	Not Available	603	Open in IMG/M
3300021374\|Ga0213881_10288309	Not Available	732	Open in IMG/M
3300021377\|Ga0213874_10186513	Not Available	740	Open in IMG/M
3300021401\|Ga0210393_10061669	Not Available	2954	Open in IMG/M
3300021401\|Ga0210393_10356500	Not Available	1191	Open in IMG/M
3300021403\|Ga0210397_10604511	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	838	Open in IMG/M
3300021405\|Ga0210387_10200323	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1732	Open in IMG/M
3300021420\|Ga0210394_10787764	Not Available	831	Open in IMG/M
3300021439\|Ga0213879_10132494	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	715	Open in IMG/M
3300021441\|Ga0213871_10005516	Not Available	2615	Open in IMG/M
3300021444\|Ga0213878_10086148	Not Available	1263	Open in IMG/M
3300021444\|Ga0213878_10142575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	991	Open in IMG/M
3300021475\|Ga0210392_10041713	Not Available	2773	Open in IMG/M
3300021479\|Ga0210410_10131231	All Organisms → cellular organisms → Bacteria	2227	Open in IMG/M
3300021479\|Ga0210410_10538440	Not Available	1041	Open in IMG/M
3300021479\|Ga0210410_11302637	Not Available	619	Open in IMG/M
3300021560\|Ga0126371_12356663	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	643	Open in IMG/M
3300022557\|Ga0212123_10131920	All Organisms → cellular organisms → Bacteria	1963	Open in IMG/M
3300022557\|Ga0212123_10196993	Not Available	1498	Open in IMG/M
3300025320\|Ga0209171_10111503	Not Available	1656	Open in IMG/M
3300025898\|Ga0207692_11065532	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	535	Open in IMG/M
3300025906\|Ga0207699_11372572	Not Available	523	Open in IMG/M
3300025915\|Ga0207693_11000252	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	638	Open in IMG/M
3300025939\|Ga0207665_11035515	Not Available	653	Open in IMG/M
3300026551\|Ga0209648_10813524	Not Available	511	Open in IMG/M
3300026920\|Ga0208575_1016485	Not Available	675	Open in IMG/M
3300027014\|Ga0207815_1039192	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	573	Open in IMG/M
3300027109\|Ga0208603_1058763	Not Available	580	Open in IMG/M
3300027502\|Ga0209622_1083373	Not Available	585	Open in IMG/M
3300027651\|Ga0209217_1197437	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	542	Open in IMG/M
3300027680\|Ga0207826_1003246	Not Available	4495	Open in IMG/M
3300027698\|Ga0209446_1015357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1886	Open in IMG/M
3300027783\|Ga0209448_10075581	Not Available	1131	Open in IMG/M
3300027812\|Ga0209656_10003050	All Organisms → cellular organisms → Bacteria	10851	Open in IMG/M
3300027812\|Ga0209656_10030555	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria	3197	Open in IMG/M
3300027812\|Ga0209656_10198036	Not Available	975	Open in IMG/M
3300027824\|Ga0209040_10035383	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria	3119	Open in IMG/M
3300027879\|Ga0209169_10330834	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300027889\|Ga0209380_10316956	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	916	Open in IMG/M
3300027908\|Ga0209006_10052682	All Organisms → cellular organisms → Bacteria	3652	Open in IMG/M
3300028798\|Ga0302222_10179432	Not Available	831	Open in IMG/M
3300030007\|Ga0311338_11129829	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	749	Open in IMG/M
3300030399\|Ga0311353_10031338	All Organisms → cellular organisms → Bacteria	5630	Open in IMG/M
3300031525\|Ga0302326_10243828	All Organisms → cellular organisms → Bacteria	2939	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.59%
Host-Associated	Host-Associated	7.41%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	69.44%
Aquatic	Environmental → Aquatic	23.15%
Plants	Host-Associated → Plants	7.41%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	64.81%
Freshwater	Environmental → Aquatic → Freshwater	18.52%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.48%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.70%
Peat	Environmental → Terrestrial → Peat	3.70%
Sediment	Environmental → Aquatic → Sediment	0.93%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.93%
Roots	Host-Associated → Plants → Roots	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.19%
Loam	Environmental → Terrestrial → Soil → Loam	24.07%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	18.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.48%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.56%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	3.70%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	18.52%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.48%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.56%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	3.70%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.70%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.78%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	15.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.41%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.41%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	6.48%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.56%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	4.63%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	4.63%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	3.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.70%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.70%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.78%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	2.78%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.85%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.85%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.93%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.93%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.93%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459002	Grass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cm	Environmental	Open in IMG/M
2170459007	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010857	Boreal forest soil eukaryotic communities from Alaska, USA - W1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010860	Boreal forest soil eukaryotic communities from Alaska, USA - C5-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010865	Boreal forest soil eukaryotic communities from Alaska, USA - C3-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021358	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3	Host-Associated	Open in IMG/M
3300021361	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2	Host-Associated	Open in IMG/M
3300021372	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01	Environmental	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300021441	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1	Host-Associated	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025320	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026920	Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN397 (SPAdes)	Environmental	Open in IMG/M
3300027014	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 4 (SPAdes)	Environmental	Open in IMG/M
3300027109	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes)	Environmental	Open in IMG/M
3300027502	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028798	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E1_09557060	2170459002	Grass Soil	MHDSDVIPPSVAGSLAEIERSVQRFRSSYSLGTDPERLLTDEIITMRVELIRLWSEISSGKKVHADG
L02_06701130	2170459007	Grass Soil	MDDADVIPPAVAGSLAEIERSVQRFRSCYYLGADPERLLTDEIITMRVELIRLWSEINPDSKRHVRR
JGIcombinedJ26739_1008040591	3300002245	Forest Soil	HMNDLDVIPPSVAGSLAEIERSVQRFRSWYSLGADPERLLTDEIITMRFELIRLWSEISSEKKLRAGR*
JGIcombinedJ26739_1010806331	3300002245	Forest Soil	MNDSDVIPPSVAGCLAEIERSVQRFRSCYSLGTDPERSLTDEIITMRFELIRLWSEISSDKKTQAR*
JGIcombinedJ26739_1010828431	3300002245	Forest Soil	MNDSDVIPPSVAGSLAEIERSVQRFRSCYSLGTDPQRSLTDEIITMRFELIRLWSEISSEKKVRTDL*
JGIcombinedJ26739_1010889932	3300002245	Forest Soil	MSNTNTIPLSVANSLEEIERSLQRFRGCYRLGTDPQQLLTEEIITMRVELLRLWSEVKAEKKGTD*
JGI26339J46600_100545232	3300003218	Bog Forest Soil	MHDADVIPPSVAGSLAEIERSVQRFRSCYSLGTDPXRVLTDEIITMRVELIRLWSEINSDKKQRLRR*
JGI26341J46601_100091672	3300003219	Bog Forest Soil	MHDADVIPPSVAGSLAEIERSVQRFRXCYSLGTDPERLLTDEIITMRVELIRLWSEINSDKKQRLRR*
JGI26341J46601_100108002	3300003219	Bog Forest Soil	MHDADVIPPSVAGSLAEIERSVQRFRSCYSLGTDPERVLTDEIITMRVELIRLWSEINSDKKQRLRR*
JGI26341J46601_101329772	3300003219	Bog Forest Soil	MHDSHLIPPSVAECLTEIERSVQRFRSSYSLGTDPERLLTDEIITMRVELIRLWSEISSGKHLHVRR*
JGI26340J50214_100484271	3300003368	Bog Forest Soil	ICSNEHMHDADVIPPSVAGSLAEIERSVQRFRSCYSLGTDPERVLTDEIITMRVELIRLWSEINSDKKQRLRR*
Ga0062387_1004897212	3300004091	Bog Forest Soil	MNDSDIIPPSVAGCLSEIERSVQRLRSSYSLGTDPERLLTDEIITMRVELIRLWSEISSAKRMHTDA*
Ga0062387_1007827591	3300004091	Bog Forest Soil	MHDADVIPPSVAGSLAEIERSVQRFRSCYSLGTDPERLLTDEIITMRVELIRLWSQINSDKKQRLCR*
Ga0062389_1011211501	3300004092	Bog Forest Soil	MNDSHLIPPSVAECLAEIERSVQRFRSSYSLGMDPERLLTDEIITIRVELIRLWSEICSNRKIR*
Ga0062389_1023167072	3300004092	Bog Forest Soil	SVAGCLAEIERSVQRFRSSYSLGTDPERLLTDEIITMRVELIRLWSEISSGRKMHADG*
Ga0062389_1028907311	3300004092	Bog Forest Soil	ICSYEHMNDSHVIPQSVAGCLAEIERSVQRFRSSYSLGTDPERLLTDEIITMRFELIRLWSEISSGKRMHADR*
Ga0062389_1036289121	3300004092	Bog Forest Soil	PDVIPPSVAGSLAEIERAVQRFRSCYSLGTNPERSLTDEIITMRFELIRLWSEINSEKKVQARG*
Ga0066388_1061196061	3300005332	Tropical Forest Soil	MNNADVIPPAVAGSLAEIERSVQRFRSSYSLGTDPERLLTDEIITMRVELIRLWSQINSDRDSRMHH*
Ga0070709_116386781	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MNDSDVIPPSVAGCLAEIERSVQRFRSSYNLGTDPERLLTDEIITMRVELIRLWSEISSGKKMHADG*
Ga0070714_1016445921	3300005435	Agricultural Soil	MNDSDVIPPSVAGCLAEIERSVQRFRSCYSLGTDPERSLTDEIITMRFELIRLWSEISSDKKTQAHR*
Ga0070710_114963602	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	PSVAGCLAEIERSVERFRSSYSLGTDPERLLTDEIITMRVELIRLWSEISSGKRMHADG*
Ga0070706_1019312471	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MSSEITIPASVAHSLEEIERSLKRFRSCYGFGTDPQQLLAQEIITMRVELLRLWSEVSAE
Ga0070698_1018544831	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MHDADVIPPSVAGSLAEIERSVQRFRSCYSLGTDPERLLTDEIITMRVELIRLWSQINSDKKQQLRR*
Ga0070762_103957831	3300005602	Soil	MHDADVIPPSVAGSLAEIERSVQRFRSSYSLGADPERLLTDEIITMRVELIRLWSEINSDKNERLRRRS*
Ga0070764_104512952	3300005712	Soil	MNDSDVIPPSVAGCLAEIERSVQRLRSSYSLGTDPERLLTDEIITMRVELIRLWSEISSAKKMNTDA*
Ga0070766_104385321	3300005921	Soil	MQDADVIPPSVAGSLAEIERSVQRFRSCYSLGTDPERLLTDEIITMRVELIRLWSQINSDKKQQLRR*
Ga0075014_1007182912	3300006174	Watersheds	MHDADVIPPSVAGSLAEIERSVQRFRSCYSLGTDPERVLTGEIITMRVELIRLWSEINSDKKQRLRR*
Ga0073928_111509871	3300006893	Iron-Sulfur Acid Spring	PSVAGSLAEIERSVQRFRSCYSLGTDPERLLTDEIITMRVELIRLWSQINSDKKEQLRR*
Ga0126373_105994461	3300010048	Tropical Forest Soil	VALNKIDVADCRVICSNEHMNNADVIPPAVAGCLAEIERSVQRFRSSYSLGTDPERLLTDEIITMRVELIRLWSEINSDRNSGMRH*
Ga0074046_100867211	3300010339	Bog Forest Soil	MYDADVIPPSVAGSLAEIERSVQRFRSCYSLGTDPERLLTDEIITMRVELIRLWSEINSDKKQRLRR*
Ga0074046_100955231	3300010339	Bog Forest Soil	DADVIPPSVAGSLAEIERSVQRFRSCYSLGTDPERVLTDEIITMRVELIRLWSEINSDKKQRLRR*
Ga0074046_100986152	3300010339	Bog Forest Soil	MHDPHLIPPSVAECLTEIERSVQRFRSSYSLGTDPERLLTDEIITMRVELIRLWSEISSGKHLQVRR*
Ga0074045_101690662	3300010341	Bog Forest Soil	MHDADVIPPSVAGSLAEIERSVQRFRSCYSLGTDPERLLTDEIITMRVELIRLWSEINSDKKQRLRR*
Ga0074044_100180341	3300010343	Bog Forest Soil	ICSYEHMHDADVIPPSVAGSLAEIERSVQRFRSCYSLGTDPERLLTDEIITMRVELIRLWSEINSDKKQRLRR*
Ga0126378_110612232	3300010361	Tropical Forest Soil	VALNNFGVADCRVICSNEHMNNADVIPPAVAGSLAEIERSVQRFRSSYSLGTDPERLLTDEIITMRVELIRLWSEINSDRNSGMRH*
Ga0126379_106957922	3300010366	Tropical Forest Soil	MNNADVIPPAVAGSLAEIERSVQRFRSSYSLGTDPERLLTDEIITMRVELIRLWSEINSDRNSGMRH*
Ga0136449_1001183468	3300010379	Peatlands Soil	MNSMNDSGVIPSSVAGSLAEIERSVQRFRSCYSLGTDPNRLLTDEIITMRFELIRLWSEINSEKKVPRGG*
Ga0136449_1012504821	3300010379	Peatlands Soil	MHDADVIPLSVAGSLAEIERSVQRFRSCYSLGTDPERLLTDEIITMRVELIRLWSEINSDKKQRLRR*
Ga0136449_1030812321	3300010379	Peatlands Soil	ADVIPPSVAGSLAEIERSVQRFRSCYSLGTDPERLLTDEIITMRVELIRLWSEINSDKKQRLRR*
Ga0126354_11163192	3300010857	Boreal Forest Soil	ESNVIPQSVAGCLAEIERSVQRFRSCYDLGADPKRMQADEIITMRVELIRLWSEISSEQKGSAAG*
Ga0126351_11121122	3300010860	Boreal Forest Soil	NVIPQSVAGCLAEIERSVQRFRSCYDLGADPKRMQTDEIITMRVELIRLWSEISSEQKGSAAG*
Ga0126346_12041381	3300010865	Boreal Forest Soil	MHESNVIPQSVAGCLAEIERSVQRFRSCYDLGADPKRMQTDEIITMRVELIRLWS
Ga0137397_113239881	3300012685	Vadose Zone Soil	SDVIPPSVAGSLAEIERSVQRFRSCYSLGADPERLLTDEIITMRVELIRLWSEIRSEKKYR*
Ga0164302_104996752	3300012961	Soil	MNDADVIPPSVAGSLAEIERSVQRFRSCYSLGADPERLLTDEIITMRVELIRLWSEISSDRNKQLRR*
Ga0181538_106818141	3300014162	Bog	MHDADVIPSSVAGSLAEIERSVQRFRSCYSLGTDPERVLTDEIITMRVELIRLWSEINSDKKQRLRR*
Ga0181535_100821102	3300014199	Bog	MHDPQLIPPSVAECLAEIERSVQRFRSSYSLGMDPERLLTDEIITMRVELIRLWSEISRDTGAHVRR*
Ga0182039_111221501	3300016422	Soil	RCVICSSEHMNSADIIPPAVAGSLAEIERSVQRFRSSYSLGADPERLLTDEIITMRVELIRLWSEINSDKNSRIRR
Ga0187782_106323001	3300017975	Tropical Peatland	PPSVAECLAEIERSVQRFRSSYNSGVDPERLLTDEIITMRVELIRLWSEICSRNKLEQRGQLNQRTP
Ga0187863_101394212	3300018034	Peatland	MHDPHLIPPSVAECLAEIERSVQRFRSSYSIGMDPERLLTDEIITMRVELIRLWSEISPDRSAHVRR
Ga0210407_107144232	3300020579	Soil	MHDADVIPPSVAGSLAEIERSVQRFRSSYSLGADPERLLTDEIITMRVELIRLWSEINSDKNERLRRRS
Ga0210395_100272125	3300020582	Soil	MNDSDVIPPSVAGSLAEIERSVQRFRSCYSLGADPERLLTDEIITMRVELIRLWSEISAEKKYR
Ga0210395_112392331	3300020582	Soil	MNDSDVIPPSVAGCLAEIERSVQRFRSSYSLGTDPERLLTDEIITMRVELIRLWSEISSGKRMHADG
Ga0215015_102639382	3300021046	Soil	MHDADAIPSSIAGSLAEIERSVQRFRSCYSLGADPERLLTDEIITMRVELIRLWSEINSDKKERLRRRS
Ga0210400_105753321	3300021170	Soil	MNDSDVIPPSVAGSLAEIERSVQRFRSCYSLGADPERLLTDEIITMRVELIRLWSEISAEMK
Ga0210408_101479542	3300021178	Soil	MNDADVIPPSVAGSLAEIERSVQRFRSCYSLGTDPERLLTDEIITMRVELIRLWSQINSDKKQQLRR
Ga0210396_103159882	3300021180	Soil	CSYEHMNDSDVIPPSVAGCLAEIERSVQRLRSSYSLGTDPERLLTDEIITMRVELIRLWSEISSAKKMNTDA
Ga0210388_106492532	3300021181	Soil	MNDPDVIPPSVAGCLAEIERSVQRFRSSYSLGTDPERLLTDEIITMRVELIRLWSEISSGKRMHADG
Ga0213873_100063171	3300021358	Rhizosphere	MNNADVIPPAVAGSLAEIERSVQRFRSSYSLGADPERLLTDEIITMRVELIRLWSEINADKNSRMRH
Ga0213873_101354961	3300021358	Rhizosphere	MNNADIIPPAVAGSLAEIERSIQRFRSSYSLGTDPERLLTDEIITMRVELIRLWSEISDKNSRIGR
Ga0213873_103004442	3300021358	Rhizosphere	HACNICSNEHMKDAEVIPPAVAGALAEIERSVQRFRSSYNLGTDPQRLLIDEIITMRVELIRLWSEINSDQNSRIQR
Ga0213872_1000183811	3300021361	Rhizosphere	MNNADVIPPAVAGSLAEIERSVQRFRSSYSLGTDPERLLTDEIITMRVELIRLWSEINSDKNSRMRH
Ga0213872_100259481	3300021361	Rhizosphere	MKDAEVIPPAVAGALAEIERSVQRFRSSYNLGTDPQRLLIDEIITMRVELIRLWSEINPDQNSRIHR
Ga0213872_101378322	3300021361	Rhizosphere	MNNADIIPPAVAGSLAEIERSVQRFRSSYSLGTDPERLLTDEIITMRVELIRLWSEINSDKNSRIRR
Ga0213877_100742982	3300021372	Bulk Soil	MNNADIIPPAVAGSLAEIERSVQRFRSSYSLGTDPERLLTDEIITMRVELIRLWSEINSDKNSPIRR
Ga0213877_102361741	3300021372	Bulk Soil	MEDADVIPPAVAGSLAEIERSVQRFRSSYTLGTDPERLLTDEIITMRVELIRLWSEINSDKNSRIHR
Ga0213881_102883091	3300021374	Exposed Rock	VCIGALICSYEHMNNSDIIPPSIAGSLAEIERSVQRFRSWYSLGADPERLLTDEIITMRFELIRLWSEISSEKKPRTDR
Ga0213874_101865131	3300021377	Plant Roots	MDNSDIIPPSIAGSLAEIERSVQRFRSWYSLGADPERLLTDEIITMRFELIRLWSEISSEKKLRIDR
Ga0210393_100616691	3300021401	Soil	MNDSDVIPPSVAGSLAEIERSVQRFRSCYSLGADPERLLTDEIITMRVELIRLWSEIRSEKKYR
Ga0210393_103565003	3300021401	Soil	MNDSDIIPPSVAGCLAEIERSVQRLRSSYSLGTDPERLLTDEIITMRVELIRLWSEISSAKKMNTDA
Ga0210397_106045113	3300021403	Soil	MNDSDVIPPSVAGCLAEIERSVQRFRSSYSLGTDPERLLTDEIITMRVELIRLWSEIGSGKRMHADR
Ga0210387_102003233	3300021405	Soil	MNDSDVIPPSVAGCLAEIERSVQRLRSSYSLGTDPERLLTDEIITMRVELIRLWSEISSVKKMHADG
Ga0210394_107877641	3300021420	Soil	KKCSYEHMNDSDVIPPSVAGCLAEIERSVQRFRSCYSLGTDPERSLTDEIITMRFELIRLWSEISSDKKTQAR
Ga0213879_101324941	3300021439	Bulk Soil	LQNADDFCVAHTCNICSNEHMKDAEVIPPAVAGALAEIERSVQRFRSSYNLGTDPQRLLIDEIITMRVELIRLWSEINSDQNSRIQR
Ga0213871_100055162	3300021441	Rhizosphere	MNIMDDSNLIPPSIASSLAEIERSVQRFRSWYSLGADPQRLLTDEIITMRFELIRLWSQIYSEKKL
Ga0213878_100861481	3300021444	Bulk Soil	HMNSADVIPPVVAGSLAEIERSVQRFRSSYSLGTDPERLLTDEIITMRVELIRLWSEINSDKNSRIRR
Ga0213878_101425752	3300021444	Bulk Soil	MHDDQLIPPSVAECLAEIERSIQRFRSSYNAGLDPERLLTDEIITMRVELIRLWSEINSHKNPQLHSSDG
Ga0210392_100417134	3300021475	Soil	MNDSDVIPPSVAGSLAEIERSVQRFRSCYSLGADPERLLTDEIITMRVELIRLWSEISSEKKYR
Ga0210410_101312314	3300021479	Soil	MNDSDVIPPSVAGCLAEIERSVQRLRSSYSLGTDPERLLTDEIITMRVELIRLWSEISSAKKMNTDA
Ga0210410_105384401	3300021479	Soil	VTPPLQYSGLLFHLAIEPKKCSYEHMNDSDVIPPSVAGCLAEIERSVQRFRSCYSLGTDPERSLTDEIITMRFELIRLWSEISSDKKTQAR
Ga0210410_113026371	3300021479	Soil	AFRPWICSSEHMNDSDVIPPSVAGSLAEIERSVQRFRSCYSLGADPERLLTDEIITMRVELIRLWSEISSEKKYR
Ga0126371_123566631	3300021560	Tropical Forest Soil	VALNNFGVADCRVICSNEHMNNADVIPPAVAGSLAEIERSVQRFRSSYSLGTDPERLLTDEIITMRVELIRLWSEINSDRNSGMRH
Ga0212123_101319202	3300022557	Iron-Sulfur Acid Spring	MNDADVIPPSVAGSLAEIERSVQRFRSCYSLGTDPERLLTDEIITMRVELIRLWSQINSDKKEQLRR
Ga0212123_101969931	3300022557	Iron-Sulfur Acid Spring	PPSVAGSLAEIERSVQRFRSCYSLGTDPERLLTDEIITMRVELIRLWSQINSDKKQRLCR
Ga0209171_101115031	3300025320	Iron-Sulfur Acid Spring	MHDADVIPPSVAGSLAEIERSVQRFRSCYSLGTDPERLLTDEIITMRVELIRLWSQINSDKKQRLCR
Ga0207692_110655323	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	PSVAGCLAEIERSVERFRSSYSLGTDPERLLTDEIITMRVELIRLWSEISSGKRMHADG
Ga0207699_113725722	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MHDSDVIPPTVVNSLAEIERSVQRFRSCYSLGTDPERSLTDEIITMRFELIRLWS
Ga0207693_110002521	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MNDSDVIPPSIAGSLAEIERSVQRFRSCYSLGADPERSLTDEIITMRFELIRLWSEISSEKKSAGPPVKLNRF
Ga0207665_110355151	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MNDADVIPPSVAGSLAEIERSVQRFRSCYSLGADPERLLTDEIITMRVELIRLWSEISSDRNKQLRR
Ga0209648_108135242	3300026551	Grasslands Soil	VIPPSVAGSLAEIERSVQRFRSSYSLGADPERLLTDEIITMRVELIRLWSEINSDKNERLRRRS
Ga0208575_10164852	3300026920	Soil	MSNTNTIPLSVANSLEEIERSLQRFRGCYGLGTDPQQLLAEEIITMRVELLRLWSEVSGREKGTE
Ga0207815_10391923	3300027014	Tropical Forest Soil	MHDADVIPPSVAGSLAEIERSVQRFRSCYSLGADPERLLTDEIITMRVELIRLWSEINSDKKER
Ga0208603_10587631	3300027109	Forest Soil	MHDADVIPPSVAGSLAEIERSVQRFRSCYSLGTDPERLLTDEIITMRVELIRLWSQINSDKKQQLRR
Ga0209622_10833731	3300027502	Forest Soil	MDNADVIPPAVAGSLAEIERSVQRFRSSYSLGTDPERLLTDEIITMRVELIRLWSEINSDKNSRMRR
Ga0209217_11974371	3300027651	Forest Soil	MNDLDVIPPSVAGSLAEIERSVQRFRSWYSLGADPERLLTDEIITMRFELIRLWSEISSEKKLRAGR
Ga0207826_10032463	3300027680	Tropical Forest Soil	MHDADVIPPSVAGSLAEIERSVQRFRSCYSLGADPERLLTDEIITMRVELIRLWSEINSDKKERLRRPS
Ga0209446_10153572	3300027698	Bog Forest Soil	MYDADVIPPSVAGSLAEIERSVQRFRSCYSLGTDPERVLTDEIITMRVELIRLWSEINSDKKQRLRR
Ga0209448_100755812	3300027783	Bog Forest Soil	MHDADVIPPSVAGSLAEIERSVQRFRSCYSLGTDPERVLTDEIITMRVELIRLWSEINSDKKQRLRR
Ga0209656_100030504	3300027812	Bog Forest Soil	MHDSHLIPPSVAECLTEIERSVQRFRSSYSLGTDPERLLTDEIITMRVELIRLWSEISSGKHLHVRR
Ga0209656_100305552	3300027812	Bog Forest Soil	MYDADVIPPSVAGSLAEIERSVQRFRSCYSLGTDPERLLTDEIITMRVELIRLWSEINSDKKQRLRR
Ga0209656_101980361	3300027812	Bog Forest Soil	HMHDPHLIPPSVAECLTEIERSVQRFRSSYSLGADPERLLTDEIITMRVELIRLWSEISSGKHLQVRR
Ga0209040_100353833	3300027824	Bog Forest Soil	MHDADVIPPSVAGSLAEIERSVQRFRSCYSLGTDPERLLTDEIITMRVELIRLWSEINSDKKQRLRR
Ga0209169_103308342	3300027879	Soil	ICSYEHMNDSDVIPPSVAGCLAEIERSVQRLRSSYSLGTDPERLLTDEIITMRVELIRLWSEISSAKKMNTDA
Ga0209380_103169561	3300027889	Soil	MQDADVIPPSVAGSLAEIERSVQRFRSCYSLGTDPERLLTDEIITMRVELIRLWSQINSDKKQQLRR
Ga0209006_100526823	3300027908	Forest Soil	MNDSDVIPPSVAGCLAEIERSVQRFRSCYNLGANPERLLTDEIITMRVELIRLWSEIGSEKKL
Ga0302222_101794322	3300028798	Palsa	SPELLLQFQVAFLCHKCSYEHMYDSDVIPPSVAGSLAEIERSVQRFRSCYSLGADPERLLTDEIITMRFELIRLWSEISSERKVQARR
Ga0311338_111298291	3300030007	Palsa	MHDPDVIPPSVAGSLAEIERSVQRFRSCYSLGTDPERSLTDEIITMRFELIRLWSEISSEKKAR
Ga0311353_100313386	3300030399	Palsa	MYDSDVIPPSVAGSLAEIERSVQRFRSCYSLGADPERLLTDEIITMRFELIRLWSEISSERKVQARR
Ga0302326_102438282	3300031525	Palsa	MHHPDVIPPSVAGSLAEIERSVQRFRSCYSLGTDPERSLTDEIITMRFELIRLWSEISSEKKAQPRG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090739

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences