Metagenome / Metatranscriptome Family F090716

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F090716
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	63 residues
Representative Sequence	MGGPRCDFYDWVTHRTCEQAARWVTHQKSQDTGRLERYYCDRHRPPRAHPIGAPGAAQDPKAR
Number of Associated Samples	81
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	61.11 %
% of genes near scaffold ends (potentially truncated)	33.33 %
% of genes from short scaffolds (< 2000 bps)	62.96 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (25.000 % of family members)
Environment Ontology (ENVO)	Unclassified (56.481 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.889 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 14.29% β-sheet: 0.00% Coil/Unstructured: 85.71%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF14464	Prok-JAB	17.59
PF00487	FA_desaturase	10.19
PF01979	Amidohydro_1	5.56
PF04306	DUF456	3.70
PF13594	Obsolete Pfam Family	2.78
PF13672	PP2C_2	1.85
PF04029	2-ph_phosp	1.85
PF13414	TPR_11	0.93
PF06181	Urate_ox_N	0.93
PF13191	AAA_16	0.93
PF00873	ACR_tran	0.93
PF03561	Allantoicase	0.93
PF14559	TPR_19	0.93
PF13376	OmdA	0.93
PF00990	GGDEF	0.93
PF02738	MoCoBD_1	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	10.19
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	10.19
COG2045	Phosphosulfolactate phosphohydrolase or related enzyme	Coenzyme transport and metabolism [H]	3.70
COG2839	Uncharacterized conserved protein YqgC, DUF456 family	Function unknown [S]	3.70
COG3748	Uncharacterized membrane protein	Function unknown [S]	0.93
COG4266	Allantoicase	Nucleotide transport and metabolism [F]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	85.19 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.78 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	85.19 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.93 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	48.15 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.93 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	48.15 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.93 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	48.15 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.93 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	48.15 %
Polyangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae	0.93 %
Unclassified	root	N/A	0.00 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10008542	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	5551	Open in IMG/M
3300002557\|JGI25381J37097_1001100	All Organisms → cellular organisms → Bacteria	4213	Open in IMG/M
3300002557\|JGI25381J37097_1048566	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	700	Open in IMG/M
3300002558\|JGI25385J37094_10168569	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	586	Open in IMG/M
3300002558\|JGI25385J37094_10219212	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	507	Open in IMG/M
3300002560\|JGI25383J37093_10029713	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1830	Open in IMG/M
3300002562\|JGI25382J37095_10002125	All Organisms → cellular organisms → Bacteria	6333	Open in IMG/M
3300002908\|JGI25382J43887_10011943	All Organisms → cellular organisms → Bacteria	4446	Open in IMG/M
3300002908\|JGI25382J43887_10273934	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	761	Open in IMG/M
3300002908\|JGI25382J43887_10308198	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	688	Open in IMG/M
3300002909\|JGI25388J43891_1000756	All Organisms → cellular organisms → Bacteria	6480	Open in IMG/M
3300002909\|JGI25388J43891_1002919	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3532	Open in IMG/M
3300002911\|JGI25390J43892_10000800	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	6192	Open in IMG/M
3300002911\|JGI25390J43892_10038802	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1142	Open in IMG/M
3300002912\|JGI25386J43895_10004005	All Organisms → cellular organisms → Bacteria	3931	Open in IMG/M
3300002916\|JGI25389J43894_1043858	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	764	Open in IMG/M
3300005166\|Ga0066674_10010665	All Organisms → cellular organisms → Bacteria	3788	Open in IMG/M
3300005166\|Ga0066674_10531752	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	525	Open in IMG/M
3300005171\|Ga0066677_10106592	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1490	Open in IMG/M
3300005172\|Ga0066683_10207870	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1209	Open in IMG/M
3300005175\|Ga0066673_10040615	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2295	Open in IMG/M
3300005178\|Ga0066688_10724239	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	629	Open in IMG/M
3300005178\|Ga0066688_10828451	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	576	Open in IMG/M
3300005179\|Ga0066684_10051133	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2368	Open in IMG/M
3300005179\|Ga0066684_10051181	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2367	Open in IMG/M
3300005179\|Ga0066684_10897198	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	579	Open in IMG/M
3300005180\|Ga0066685_10319888	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1075	Open in IMG/M
3300005180\|Ga0066685_10376794	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	985	Open in IMG/M
3300005180\|Ga0066685_11166724	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	500	Open in IMG/M
3300005181\|Ga0066678_11005180	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	540	Open in IMG/M
3300005406\|Ga0070703_10065486	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1200	Open in IMG/M
3300005440\|Ga0070705_100095954	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1860	Open in IMG/M
3300005440\|Ga0070705_100286062	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1174	Open in IMG/M
3300005446\|Ga0066686_10636925	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	724	Open in IMG/M
3300005446\|Ga0066686_10824098	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	615	Open in IMG/M
3300005447\|Ga0066689_10140141	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1429	Open in IMG/M
3300005447\|Ga0066689_10795519	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	588	Open in IMG/M
3300005467\|Ga0070706_100583917	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1039	Open in IMG/M
3300005468\|Ga0070707_101116604	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	754	Open in IMG/M
3300005518\|Ga0070699_100675032	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	943	Open in IMG/M
3300005536\|Ga0070697_100007921	All Organisms → cellular organisms → Bacteria	8279	Open in IMG/M
3300005556\|Ga0066707_10632255	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	679	Open in IMG/M
3300005558\|Ga0066698_11015589	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	526	Open in IMG/M
3300005598\|Ga0066706_10704372	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	802	Open in IMG/M
3300006046\|Ga0066652_100363627	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1306	Open in IMG/M
3300006175\|Ga0070712_100268294	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1370	Open in IMG/M
3300006755\|Ga0079222_10405025	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	952	Open in IMG/M
3300006755\|Ga0079222_11322965	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	659	Open in IMG/M
3300006794\|Ga0066658_10034074	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2090	Open in IMG/M
3300006794\|Ga0066658_10928853	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	503	Open in IMG/M
3300006852\|Ga0075433_10016808	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae	6043	Open in IMG/M
3300006871\|Ga0075434_100024301	All Organisms → cellular organisms → Bacteria	5924	Open in IMG/M
3300006871\|Ga0075434_100184906	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2104	Open in IMG/M
3300006903\|Ga0075426_10032025	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3758	Open in IMG/M
3300006903\|Ga0075426_10370871	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1054	Open in IMG/M
3300006903\|Ga0075426_11564239	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	501	Open in IMG/M
3300007258\|Ga0099793_10109407	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1284	Open in IMG/M
3300009012\|Ga0066710_100557723	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1734	Open in IMG/M
3300009088\|Ga0099830_10396770	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1115	Open in IMG/M
3300009088\|Ga0099830_11756234	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	518	Open in IMG/M
3300009137\|Ga0066709_100485995	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1735	Open in IMG/M
3300010109\|Ga0127497_1089219	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	741	Open in IMG/M
3300010322\|Ga0134084_10156208	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	771	Open in IMG/M
3300010325\|Ga0134064_10070862	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1102	Open in IMG/M
3300010336\|Ga0134071_10318328	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	783	Open in IMG/M
3300012189\|Ga0137388_10611533	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1013	Open in IMG/M
3300012203\|Ga0137399_10129466	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1993	Open in IMG/M
3300012203\|Ga0137399_11409036	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	583	Open in IMG/M
3300012204\|Ga0137374_10012852	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	9740	Open in IMG/M
3300012362\|Ga0137361_10059349	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3192	Open in IMG/M
3300012373\|Ga0134042_1062680	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	531	Open in IMG/M
3300012376\|Ga0134032_1012394	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	833	Open in IMG/M
3300012379\|Ga0134058_1204587	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	996	Open in IMG/M
3300012396\|Ga0134057_1205516	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1076	Open in IMG/M
3300012410\|Ga0134060_1106554	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	652	Open in IMG/M
3300012582\|Ga0137358_10014408	All Organisms → cellular organisms → Bacteria → Proteobacteria	4989	Open in IMG/M
3300012683\|Ga0137398_10004050	All Organisms → cellular organisms → Bacteria	6639	Open in IMG/M
3300012918\|Ga0137396_10530635	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	872	Open in IMG/M
3300012922\|Ga0137394_10400248	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1171	Open in IMG/M
3300012922\|Ga0137394_10410156	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1155	Open in IMG/M
3300012929\|Ga0137404_10039808	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3537	Open in IMG/M
3300014150\|Ga0134081_10146333	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	774	Open in IMG/M
3300014154\|Ga0134075_10263559	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	747	Open in IMG/M
3300015242\|Ga0137412_10128669	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2050	Open in IMG/M
3300015356\|Ga0134073_10006508	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2497	Open in IMG/M
3300018071\|Ga0184618_10062108	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1387	Open in IMG/M
3300018433\|Ga0066667_10441562	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1061	Open in IMG/M
3300018433\|Ga0066667_12340180	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	501	Open in IMG/M
3300019866\|Ga0193756_1001486	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2373	Open in IMG/M
3300020170\|Ga0179594_10175124	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	799	Open in IMG/M
3300025885\|Ga0207653_10008493	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3200	Open in IMG/M
3300025885\|Ga0207653_10013094	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2595	Open in IMG/M
3300026277\|Ga0209350_1003371	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	5906	Open in IMG/M
3300026296\|Ga0209235_1009139	All Organisms → cellular organisms → Bacteria → Proteobacteria	5507	Open in IMG/M
3300026310\|Ga0209239_1002630	All Organisms → cellular organisms → Bacteria	10651	Open in IMG/M
3300026316\|Ga0209155_1008971	All Organisms → cellular organisms → Bacteria	4394	Open in IMG/M
3300026323\|Ga0209472_1008092	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	5474	Open in IMG/M
3300026326\|Ga0209801_1091439	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1324	Open in IMG/M
3300026326\|Ga0209801_1237871	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	702	Open in IMG/M
3300026343\|Ga0209159_1099549	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1268	Open in IMG/M
3300026530\|Ga0209807_1004519	All Organisms → cellular organisms → Bacteria	6844	Open in IMG/M
3300027383\|Ga0209213_1002044	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3299	Open in IMG/M
3300027388\|Ga0208995_1004182	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2365	Open in IMG/M
3300027862\|Ga0209701_10039703	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3043	Open in IMG/M
3300027875\|Ga0209283_10038313	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3015	Open in IMG/M
3300028536\|Ga0137415_10004866	All Organisms → cellular organisms → Bacteria	13282	Open in IMG/M
3300028536\|Ga0137415_10005937	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	12075	Open in IMG/M
3300031152\|Ga0307501_10012453	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1458	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.44%
Host-Associated	Host-Associated	5.56%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.52%
Plants	Host-Associated → Plants	5.56%
Aquatic	Environmental → Aquatic	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.52%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.56%
Sediment	Environmental → Aquatic → Sediment	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.70%
Loam	Environmental → Terrestrial → Soil → Loam	14.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	45.37%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.56%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.78%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	25.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	20.37%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	18.52%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	11.11%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.26%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.56%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm	Environmental	Open in IMG/M
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002909	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm	Environmental	Open in IMG/M
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental	Open in IMG/M
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300002916	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010109	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012373	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012376	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012379	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012396	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012410	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019866	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m1	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300027383	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027388	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_100085425	3300001661	Forest Soil	MDGPRCDFYDWVTRRACEATARWVTNQKSHDTGRLEQYYCDKHRPPRAHLIGASGAAQDPKAR*
JGI25381J37097_10011004	3300002557	Grasslands Soil	MGEPRCDFYDWVTRRTCDQAAQWVTHQKSQDTGRLERYYCDRHRPPRAHLIGAPGAAHDPKTQ*
JGI25381J37097_10485662	3300002557	Grasslands Soil	MGGPRCDFYDWVTHTTCEDTARWVTHQKSQDTGRLERYYCDRHRPPRARLIGAPGAAQDPKAR*
JGI25385J37094_101685692	3300002558	Grasslands Soil	MGGPRCDFYDWVTHRTCEEAARWVTHQKSQDTGRLERYYCDRHRPPRAHPIGAPGAAQDPKAR*
JGI25385J37094_102192121	3300002558	Grasslands Soil	MGGPRCDFYDWVTHRTCEQAARWVTHQKSQDTGRLERYYCDRHRPPRAHPIGAPRAAQDPKAR*
JGI25383J37093_100297133	3300002560	Grasslands Soil	MGGPRCDFYDWVTHTTCEDTARWVTHQKSQDTGRLERYYCDRHRPPRAHLIGAPGAAQDPKAR*
JGI25382J37095_100021254	3300002562	Grasslands Soil	MGEPRCDFYDWVTRRTCDQPAQWVTHQKSQDTGRLERYYCDRHRPPRAHXIGAPGAAHDPKTQ*
JGI25382J43887_100119433	3300002908	Grasslands Soil	MGEPRCDFYDWVTRRTCDQAAQWVTHQKSQDTGRLERYYCDRHRPPRAHPIGAPGAAHDPKTR*
JGI25382J43887_102739341	3300002908	Grasslands Soil	MGGPRCDFYDWVTHTTCEDTARWVTHQKSQDTGRLERYYCDRHRPPRAHLIAAPGAAQDPKAR*
JGI25382J43887_103081981	3300002908	Grasslands Soil	LSMGGPRCDFYDWVTHTTCEDTARWVTHQKSQDTGRLERYYCDRHRPPRAHLIGAPGAAQDPKAR*
JGI25388J43891_10007567	3300002909	Grasslands Soil	MGDPRCDFYDWATRKSCRRPARWVTHQRSQRTDRLERYYCDAHRPPRAHPITGPSAAPPPASDR*
JGI25388J43891_10029194	3300002909	Grasslands Soil	MGEXRCDFYDWVTRRTCDXAAQWVTHQKSQDTGRLERYYCDRHRPPRAHXIXAPGAAHDPKTQ*
JGI25390J43892_100008007	3300002911	Grasslands Soil	MGEPRCDFYDWVTRRTCDQAAQWVTHQKSQDTGRLERYYCDRHRPPRAHLIGAPGAAHDPKTR*
JGI25390J43892_100388023	3300002911	Grasslands Soil	MGGPRCDFYDWATRRTCEEAARWVTHQKSQDTGRLERYYCDRHRPPRAHPIGAPGAAQDPKAR*
JGI25386J43895_100040054	3300002912	Grasslands Soil	MGEPRCDFYDWVTRRTCDQPAQWVTHQKSQDTGRLERYYCDRHRPPRAHLIGAPGAAHDPKTQ*
JGI25389J43894_10438582	3300002916	Grasslands Soil	MGGPRCDFYDWVTHRACEAAARWVTNQKSQDTGRLERYYCDKHRPPRARLIGASGAAQDPKARR*
Ga0066674_100106657	3300005166	Soil	DGGSGALSMGAIRCDFFDWTTRTTCGRPARWVTHQQSQDTGHPQRYYCDRHRPPRARLIAGPRAQRDSKAP*
Ga0066674_105317522	3300005166	Soil	MGEPRCDFYDWVTRRTCDQAAHWVTHQKSQDTSRLERYYCDRHRPPRAHPIGAPGAAHDPKT
Ga0066677_101065923	3300005171	Soil	SAFRMGDPRCDFYDWATRKSCRRPARWVTHQRSQRTARLERYYCDAHRPPRAHPITGPSAAPPPASDR*
Ga0066683_102078702	3300005172	Soil	MGGPRCDFYDWVTHRTCEQAARWVTHQKSQDTGRLERYYCDRHRPPRAHPIDAPGAAQDPKAR*
Ga0066673_100406152	3300005175	Soil	MGETRCDFYDWVTRRTCDQAAQWVTHQKSQDTGRLERYYCDRHRPPRAHLIGAPGAAHDPKTQ*
Ga0066688_107242392	3300005178	Soil	MGETRCDFYDWVTRRTCDQAAQWVTHQKSQDTGRLERYYCDRHRPPRAHPIDAPGAAHDPKTQ*
Ga0066688_108284512	3300005178	Soil	FRMGDPRCDFYDWATRKSCRRPARWVTHQRSQRTARLERYYCDAHRPPRAHPITGPSAAPPPASDR*
Ga0066684_100511335	3300005179	Soil	YDWVTHRTCEEAARWVTHQKSQDTGRLERYYCDRHRPPRAHPIGTPGAAQDPKAR*
Ga0066684_100511813	3300005179	Soil	MGDPRCDFYDWATRKSCRRPARWVTHQQSQRTARLERYYCDAHRPPRAHPISGPSGAPPPGSHQ*
Ga0066684_108971981	3300005179	Soil	MGGPRCDFYDWVTRRACEATARWVTHQKSQDTGRLERYYCDRHRPPRARLIGAPGAAQDPKAR*
Ga0066685_103198882	3300005180	Soil	MGGPRCDFYDWVTRRTCEEAARWVTHQKSQDTGRLERYYCDRHRPPRAHPIGAPGATQDPKAR*
Ga0066685_103767942	3300005180	Soil	MGGPRCDFYDWVTHKTCEQAARWVTHQKSQDTGRLERYYCDRHRPPRAHPIGAPGAAQDPKAR*
Ga0066685_111667241	3300005180	Soil	HLRTPSMGGPRCDFYDWVTRRTCEQPARWVTHQKSQDTGRLERYYCDRHRPPRAHLIGAPGATQDPKAR*
Ga0066678_110051802	3300005181	Soil	MGEPRCDFYDWVTRRTCDQAAHWVTHQKSQDTSRLERYYCDRHRPPRAHPIGAPGAAHDPKTR*
Ga0070703_100654862	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MGGPRCDFYDWVTHTTCDQAARWVTHQKSQDTGRLERYYCDRHRPPRAHLIGTPGAAQDRKAR*
Ga0070705_1000959542	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MGEPRCDFYDWVTHTTCDQAARWVTHQKSQDTGRLERYYCDRHRPPRAHLIGAPGAAQNPKAR*
Ga0070705_1002860622	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MGEPRCDFYDWVTHRTCDQAAQWVTHQKSQDTGRLERYYCDRHRPPRARLIGAPGAAHDPKTR*
Ga0066686_106369252	3300005446	Soil	MGGPRCDFYDWVTRRTCEQAARWVTHQKSQDTGRLERYYCDRHRPPRAHPIGAPRAAQDPKAR*
Ga0066686_108240981	3300005446	Soil	MGEPRCDFYDWVTRRTCDRAAQWVTHQKSQDTSRLERYYCDRHRPPRAHPISAPGAAHDPKTR*
Ga0066689_101401413	3300005447	Soil	MGGPRCDFYDWVTHRTCEQAARWVTHQKSQDTGRLERYYCDRHRPPRAHPIGAPGAAQDPKAR*
Ga0066689_107955192	3300005447	Soil	MGGPRCDFYDWVTHRTCEEAARWVTHQKSQDTGRLERYYCDRHRPPRAHPIGTPGAAQDPKAR*
Ga0070706_1005839172	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MDDPRCDFYDWVSHSRCDHAARWVTHQKSQDTGRLERYYCDRHRPPRAHLIGAPGAAQDPKTMTN*
Ga0070707_1011166042	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MGGPRCDFYDWVTHTTCDQAARWVTHQKSQDTGRLERYYCDRHRPPRAHLIGTPGAA
Ga0070699_1006750321	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	PRCDFYDWVTRRTCDQAAQWVTHQKSQDTGRLERYYCDRHRPPRAHPIGAPGAAHDPKTR
Ga0070697_1000079212	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MDGPRCDFYDWVTRRACEAVAHWVTNQKSQDTGRLEQYYCDKHRPPRAHLIGAPGAAEDPKAR*
Ga0066707_106322552	3300005556	Soil	MGEPRCDFYDWVTRRTCDQAAQWVTHQKSQDTSRLERYYCDRHRPPRAHPIGASGAAHDPKTR*
Ga0066698_110155891	3300005558	Soil	CDFYDWVTHRTCEEAARWVTHQKSQDTGRLERYYCDRHRPPRAHPISAPGAAQDPKAR*
Ga0066706_107043721	3300005598	Soil	RCDFFDWTTRTTCGRPARWVTHQQSQDTGHPQRYYCDRHRPPRARLIAGPRAQRDSKAP*
Ga0066652_1003636272	3300006046	Soil	MGGPRCDFYDWATRRTCEEAARWVTHQKSQDTGRLERYYCDRHRPPRAHPIGAPGTAQDPKAR*
Ga0070712_1002682942	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MGGPRCDFYDWVTHTTCDQAARWVTHQKSQDTGRLERYYCDRHRPPRAHLIGTPGAAHDRKAR*
Ga0079222_104050253	3300006755	Agricultural Soil	CDFFDWTTRTTCERPARWITHQQSQDTGRPQRYYCDRHRPPRARLIAGLRAQRNSKAP*
Ga0079222_113229652	3300006755	Agricultural Soil	MDGPRCDFYDWVTRRACEAVARWVTNQKSQDTGRLEQYYCDKHRPPRAHLISAPGAAQDPKAR*
Ga0066658_100340741	3300006794	Soil	MGGPRCDFYDWVTHTTCEDTARWVTHQKSQDTGRLERYYCDRHRPPRARLIGAPGAAQDP
Ga0066658_109288532	3300006794	Soil	MGDPRCDFYDWATRKSCRRPARWVTHQRSQRTARVERYYCDAHRPPRAHPITGPSAAPPPNSDR*
Ga0075433_100168081	3300006852	Populus Rhizosphere	MGEPRCDFYDWVTRRTCDQAAQWVTHQKSQDTGRLERYYCDRHRPPRAHPIGAP
Ga0075434_1000243015	3300006871	Populus Rhizosphere	MGEPRCDFYDWVTHTTCEQAARWVTHQKSQDTGRLEVYYCDRHRPPRAHPIGAPGAAHDPKAR*
Ga0075434_1001849065	3300006871	Populus Rhizosphere	EPRCDFYDWVTRRTCDQAAQWVTHQKSQDTGRLERYYCDRHRPPRAHPIGAPGAAHDPKTR*
Ga0075426_100320253	3300006903	Populus Rhizosphere	MREPRCDFYDWVTRRTCDQAAQWVTHQKSQDTGRLERYYCDRHRPPRAHPIGAPGAAHDPKTR*
Ga0075426_103708712	3300006903	Populus Rhizosphere	MDHPRCDFYDWVSHSRCDHAARWVTHQKSQDTGRLERYYCDRHRPPRAHLIGAPGAAQDPKTMTD*
Ga0075426_115642391	3300006903	Populus Rhizosphere	AEFRMGDPRCDFYDWATRKSCRRPARWVTHQQSQRTVRPERYYCDAHRPPRAHPITGPTAAPPPASNR*
Ga0099793_101094071	3300007258	Vadose Zone Soil	MGEPHCDFYDWVTHTTCDQAARWVTHQKSQDTGRLERYYCDRHRPPRAHLIGTPGAAQD
Ga0066710_1005577234	3300009012	Grasslands Soil	FMGDPRCDFYDWVTRRSCDQTARWITNQQSQDTGRPGRYYCDRHRPPRARLIDAPQAEKDPKAP
Ga0099830_103967702	3300009088	Vadose Zone Soil	MEDPRCDFYDWVSHTRCDQAAGWVTHQKSQDAGRHERYYCHRHRPTRAHLIGAPGAAQNPKGRMTK*
Ga0099830_117562341	3300009088	Vadose Zone Soil	MGEPRCDFYDWVTRRICDQAAQWVTHQKSQDTGRLERYYCDRHRPPRAHPIGAPGAAHDPQTRGAMRET
Ga0066709_1004859953	3300009137	Grasslands Soil	VTWGIFMGDPRCDFYDWVTRRSCDQTARWITNQQSQDTGRPGRYYCDRHRPPRARLIDAPQAEKDPKAP*
Ga0127497_10892193	3300010109	Grasslands Soil	RCDFYDWVTRRTCDQAAQWVTRQKSQDTNRLERYYCDRHRPPRAHPIGAPGAAHDPKTR*
Ga0134084_101562081	3300010322	Grasslands Soil	MGETRCDFYDWVTRRTCDQPAQWVTHQKSQDTSRLERYYCDRQRPPRAHPIGAP
Ga0134064_100708624	3300010325	Grasslands Soil	PTPSMGGPRCDFYDWVTHKTCEQAARWVTHQKSQDTGRLERYYCDRHRPPRAHPIGAPGAAQDPKAR*
Ga0134071_103183283	3300010336	Grasslands Soil	PTPSMGGPRCDFYDWVTHRTCEEAARWVTHQKSQDTGRLERYYCDRHRPPRAHLIGAPGAAQDPKAR*
Ga0137388_106115333	3300012189	Vadose Zone Soil	MEDPRCDFYDWVSHTRCDQAAGWVTHQKSQDAGRHERYYCHRHRPPRAHLIGAPGAAQNPKGRMTE*
Ga0137399_101294663	3300012203	Vadose Zone Soil	MGGPRCDFYDWVTHTTCEDTARWVTHQKSHDTGRLESYYCDKHRPPRAHLIGAPGAAQDPKAR*
Ga0137399_114090362	3300012203	Vadose Zone Soil	MGEPRCDFYDWVTHTTCEQRAGWVTHQKSQDTGRLERYYCEKHRPPRARLIGTPGAAQDPKSR*
Ga0137374_100128523	3300012204	Vadose Zone Soil	MGGPRCDFYDWVTHKTCEEAARWVTHQKSQDTGRLERYYCDRHRPPRAHPIGAPGAAQDPKAR*
Ga0137361_100593492	3300012362	Vadose Zone Soil	MGGPRCDFYDWVTHTTCDQAARWVTHQKSQDTGRLEQYYCDRHRPPRAHLIGARGASQDRKAR*
Ga0134042_10626801	3300012373	Grasslands Soil	MGEPRCDFYDWVTRRTCDQAAHWVTHQKSQDTSRLERYYCDRHRPPRAHPIGAPGAAHDPKTR
Ga0134032_10123942	3300012376	Grasslands Soil	MGAIRCDFFDWTTRTTCGRPARWVTHQQSQDTGHPQRYYCDRHRPPRARLIAGPRAQRDSKA
Ga0134058_12045873	3300012379	Grasslands Soil	MGEPRCDFYDWVTRRTCDQAAQWVTHQKSQDTSRLERYYCDRHRPPRAHPIGAPGAAHDPKTRCGLGWT*
Ga0134057_12055164	3300012396	Grasslands Soil	RCDFYDWVTRRTCDQAAHWVTHQKSQDTSRLERYYCDRHRPPRAHPIGAPGAAHDPKTR*
Ga0134060_11065541	3300012410	Grasslands Soil	DFYDWVTRRTCDQAAHWVTHQKSQDTSRLERYYCDRHRPPRAHPIGAPGAAHDPKTR*
Ga0137358_100144085	3300012582	Vadose Zone Soil	MGGPRCDFYDWVTHTTCDQAARWVTHQKSQDTGRLEQYYCDRHRPPRAHLIGAPGAAQDPKAR*
Ga0137398_100040504	3300012683	Vadose Zone Soil	MGDPRCDFYDWATRKSCGRPARWVTHQRSQRTARLERYYCDAHRPPRAHPITGPSGASPPGSHQ*
Ga0137396_105306353	3300012918	Vadose Zone Soil	QRELRALSMGGPRCDFYDWVTHTTCDDTARWVTHQKSQDTGRLERYYCDRHRPPRAHLIAGPGAARDPKAR*
Ga0137394_104002483	3300012922	Vadose Zone Soil	MGGPRCDFYDWVTHTTCDDTARWVTHQKSQDTGRLERYYCDRHRPPRAHLIAGPGAARDPKAR*
Ga0137394_104101562	3300012922	Vadose Zone Soil	MGEPRCDFYDWVTHTTCEQRAGWVTHQKSQDTGRLERYYCDKHRPPRARLIGAPGAAQDPKAKMTE*
Ga0137404_100398083	3300012929	Vadose Zone Soil	MGEPRCDFYDWVTHTTCEQRAGWVTHQKSQDTGRLERYYCDKHRPPRARLIGAPGTAQDPKSR*
Ga0134081_101463331	3300014150	Grasslands Soil	PRCDFYDWVTRRTCDQAAQWVTHQKSQDTSRLERYYCDRHRPPRAHPIGASGAAHDPKIQ
Ga0134075_102635592	3300014154	Grasslands Soil	MGEPNCDFYDWVTHKTCQRPARWITHQQSQDTGRPQRYYCDRHRPPRAHLIAAPGGERSRKAP*
Ga0137412_101286693	3300015242	Vadose Zone Soil	MDDPRCDFYDWVTHTTCEDTARWVTHQKSHDTGRLESYYCDKHRPPRAHLIGAPGAAQDPKAR*
Ga0134073_100065082	3300015356	Grasslands Soil	MGETRCDFYDWVTRRTCDQAAQWVTHQKSQDTGRLERYYCDRHRPPRAHLIGAPGAAHDPKTR*
Ga0184618_100621082	3300018071	Groundwater Sediment	MGGPRCDFYDWVTHTTCEDTARWVTNQKSHDTGRLESYYCDRHRPPRAHLIGAPGAAQDPKGTMTE
Ga0066667_104415622	3300018433	Grasslands Soil	MGGPRCDFYDWVTHTTCEDTARWVTHQKSQDTGRLERYYCDRHRPPRARLIGAPGAAQDPKAR
Ga0066667_123401802	3300018433	Grasslands Soil	MGEPRCDFYDWVTRRTCDQAAHWVTHQKSQDTSRLERYYCDRHRPPRAHPIGA
Ga0193756_10014864	3300019866	Soil	MGGPRCDFYDWVTHTTCDQAARWVTHQKSQDTGRLEQYYCDRHRPPRAHLIGAPGAAQDPKGTMTE
Ga0179594_101751242	3300020170	Vadose Zone Soil	MGGPRCDFYDWVTHTTCEDTARWVTHQKSHDTGRLESYYCDKHRPPRAHLIGAPGAAQDPKAR
Ga0207653_100084934	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MGEPRCDFYDWVTRRTCDQAAQWVTHQKSQDTGRLERYYCDRHRPPRAHPIGAPGAAHDPKTR
Ga0207653_100130944	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MGGPRCDFYDWVTHTTCDQAARWVTHQKSQDTGRLERYYCDRHRPPRAHLIGTPGAAQDRTAR
Ga0209350_10033714	3300026277	Grasslands Soil	MGETRCDFYDWVTRRTCDQAAQWVTHQKSQDTGRLERYYCDRHRPPRAHPIDAPGAAHDPKTQ
Ga0209235_10091395	3300026296	Grasslands Soil	MGEPRCDFYDWVTRRTCDQPAQWVTHQKSQDTGRLERYYCDRHRPPRAHLIGAPGAAHDPKTQ
Ga0209239_100263016	3300026310	Grasslands Soil	MGEPRCDFYDWVTRRTCDQAAQWVTHQKSQDTGRLERYYCDRHRPPRAHLIGAPGAAHDPKTQ
Ga0209155_10089712	3300026316	Soil	MGETRCDFYDWVTRRTCDQAAQWVTHQKSQDTGRLERYYCDRHRPPRAHLIGAPGAAHDPKTQ
Ga0209472_10080924	3300026323	Soil	MGDPRCDFYDWATRKSCRRPARWVTHQQSQRTARLERYYCDAHRPPRAHPISGPSGAPPPGSHQ
Ga0209801_10914394	3300026326	Soil	FYDWVTRRTCDQAAQWVTHQKSQDTGRLERYYCDRHRPPRAHLIGAPGAAHDPKTQ
Ga0209801_12378711	3300026326	Soil	FYDWVTRRTCDQAAQWVTHQKSQDTGRLERYYCDRHRPPRAHPIGAPGAAHDPKTR
Ga0209159_10995493	3300026343	Soil	MGGPRCDFYDWVTHRTCEEAARWVTHQKSQDTGRLERYYCDRHRPPRAHPIGTPGAAQDPKAR
Ga0209807_10045198	3300026530	Soil	MGETRCDFYDWVTRRTCDQAAQWVTHQKSQDTGRLERYYCDRHRPPRAHPIGAPGAAHDPKTQ
Ga0209213_10020445	3300027383	Forest Soil	MDGPRCDFYDWVTRRACEATARWVTNQKSHDTGRLEQYYCDKHRPPRAHLIGASGAAQDPKAR
Ga0208995_10041823	3300027388	Forest Soil	MGGPRCDFYDWVTHTTCEDTARWVTHQKSQDTGRLESYYCDRHRPPRAHLIAAPGAAQDPKAR
Ga0209701_100397036	3300027862	Vadose Zone Soil	MGEPRCDFYDWVSHTRCDQAAGWVTHQKSQDAGRHERYYCHRHRPTRAHLIGAPGAAQNPKGRMTK
Ga0209283_100383134	3300027875	Vadose Zone Soil	MEDPRCDFYDWVSHTRCDQAAGWVTHQKSQDAGRHERYYCHRHRPPRAHLIGAPGAAQNPKGRMTK
Ga0137415_100048667	3300028536	Vadose Zone Soil	MGGPRCDFYDWVTHTTCDDTARWVTHQKSQDTGRLERYYCDRHRPPRAHLIAGPGAARDPKAR
Ga0137415_100059374	3300028536	Vadose Zone Soil	MGGPRCDFYDWVTRRACEATARWVTNQKSHDTGRLEQYYCDKHRPPRAHLIGAPGAAQDPKAR
Ga0307501_100124533	3300031152	Soil	MGGPRCDFYDWVTRTTCEDTARWVTHQKSQDTGRLERYYCDRHRPPRAHLIEAPGAAQDPKAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090716

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences