Metagenome / Metatranscriptome Family F090707

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090707
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	73 residues
Representative Sequence	MTRLKPGFHDSNGEFVTADARVEYRFGARHGTVNAIFQDGEAEVIFDDNGDLDLVKWKHICKLACWVDKL
Number of Associated Samples	80
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	62.96 %
% of genes near scaffold ends (potentially truncated)	29.63 %
% of genes from short scaffolds (< 2000 bps)	92.59 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (52.778 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (30.556 % of family members)
Environment Ontology (ENVO)	Unclassified (33.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (68.519 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 3.06% β-sheet: 32.65% Coil/Unstructured: 64.29%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.67
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.67
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00072	Response_reg	13.89
PF02810	SEC-C	1.85
PF06627	DUF1153	1.85
PF06685	DUF1186	1.85
PF02617	ClpS	0.93
PF02586	SRAP	0.93
PF07589	PEP-CTERM	0.93
PF03176	MMPL	0.93
PF07769	PsiF_repeat	0.93
PF06684	AA_synth	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	0.93
COG2127	ATP-dependent Clp protease adapter protein ClpS	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.93
COG2409	Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily	General function prediction only [R]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
All Organisms	root	All Organisms	47.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
cellular organisms	root	All Organisms → cellular organisms	47.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	47.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	41.67 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	29.63 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1.85 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	22.22 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.78 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	1.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	21.30 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.78 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	1.85 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	21.30 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.78 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1.85 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	21.30 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.78 %
Gemmatimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	1.85 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	21.30 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.78 %
unclassified Gemmatimonas	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas	1.85 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	21.30 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.78 %
Gemmatimonas sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.	1.85 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459010\|GIO7OMY02IUOUQ	Not Available	500	Open in IMG/M
3300002245\|JGIcombinedJ26739_100077786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3073	Open in IMG/M
3300002245\|JGIcombinedJ26739_100724038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	874	Open in IMG/M
3300002914\|JGI25617J43924_10161412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	761	Open in IMG/M
3300003505\|JGIcombinedJ51221_10073188	All Organisms → cellular organisms → Bacteria → Proteobacteria	1339	Open in IMG/M
3300003505\|JGIcombinedJ51221_10075309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1320	Open in IMG/M
3300004080\|Ga0062385_10123038	Not Available	1297	Open in IMG/M
3300004092\|Ga0062389_102299826	Not Available	711	Open in IMG/M
3300004635\|Ga0062388_100385471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1211	Open in IMG/M
3300004635\|Ga0062388_101189776	Not Available	754	Open in IMG/M
3300005434\|Ga0070709_10047778	All Organisms → cellular organisms → Bacteria → Proteobacteria	2667	Open in IMG/M
3300005436\|Ga0070713_100446079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1215	Open in IMG/M
3300005569\|Ga0066705_10258763	Not Available	1104	Open in IMG/M
3300005602\|Ga0070762_10474641	Not Available	816	Open in IMG/M
3300005602\|Ga0070762_10588797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	738	Open in IMG/M
3300005610\|Ga0070763_10177349	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.	1126	Open in IMG/M
3300005764\|Ga0066903_101705448	Not Available	1200	Open in IMG/M
3300006175\|Ga0070712_100539808	All Organisms → cellular organisms → Bacteria → Proteobacteria	981	Open in IMG/M
3300006175\|Ga0070712_101100375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	690	Open in IMG/M
3300006176\|Ga0070765_102286683	Not Available	503	Open in IMG/M
3300006797\|Ga0066659_11102280	Not Available	663	Open in IMG/M
3300006800\|Ga0066660_10534561	Not Available	984	Open in IMG/M
3300009137\|Ga0066709_100487531	Not Available	1733	Open in IMG/M
3300009143\|Ga0099792_10055886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1940	Open in IMG/M
3300009143\|Ga0099792_10057852	Not Available	1913	Open in IMG/M
3300009143\|Ga0099792_10142781	All Organisms → cellular organisms → Bacteria → Proteobacteria	1311	Open in IMG/M
3300009792\|Ga0126374_10560391	Not Available	836	Open in IMG/M
3300010048\|Ga0126373_12872938	Not Available	537	Open in IMG/M
3300010358\|Ga0126370_11460158	Not Available	648	Open in IMG/M
3300010376\|Ga0126381_100134463	Not Available	3223	Open in IMG/M
3300010398\|Ga0126383_10253891	All Organisms → cellular organisms → Bacteria → Proteobacteria	1727	Open in IMG/M
3300011120\|Ga0150983_15986489	All Organisms → cellular organisms → Bacteria → Proteobacteria	674	Open in IMG/M
3300012200\|Ga0137382_10640465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	760	Open in IMG/M
3300012205\|Ga0137362_11494417	Not Available	562	Open in IMG/M
3300012208\|Ga0137376_10949286	Not Available	737	Open in IMG/M
3300012211\|Ga0137377_10837399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	852	Open in IMG/M
3300012361\|Ga0137360_10615631	Not Available	930	Open in IMG/M
3300012582\|Ga0137358_10055268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	2651	Open in IMG/M
3300012917\|Ga0137395_10713106	Not Available	726	Open in IMG/M
3300012923\|Ga0137359_10220981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1692	Open in IMG/M
3300012986\|Ga0164304_11274339	All Organisms → cellular organisms → Bacteria → Proteobacteria	597	Open in IMG/M
3300015241\|Ga0137418_10811673	Not Available	700	Open in IMG/M
3300018468\|Ga0066662_11481770	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	705	Open in IMG/M
3300020579\|Ga0210407_10665205	Not Available	809	Open in IMG/M
3300020579\|Ga0210407_11179251	Not Available	577	Open in IMG/M
3300020580\|Ga0210403_10077145	All Organisms → cellular organisms → Bacteria → Proteobacteria	2680	Open in IMG/M
3300020581\|Ga0210399_10095853	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.	2422	Open in IMG/M
3300020581\|Ga0210399_10380640	Not Available	1177	Open in IMG/M
3300020582\|Ga0210395_10644963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	794	Open in IMG/M
3300020582\|Ga0210395_10705901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	754	Open in IMG/M
3300020583\|Ga0210401_10025151	All Organisms → cellular organisms → Bacteria	5695	Open in IMG/M
3300020583\|Ga0210401_10389898	All Organisms → cellular organisms → Bacteria → Proteobacteria	1255	Open in IMG/M
3300020583\|Ga0210401_10445585	All Organisms → cellular organisms → Bacteria → Proteobacteria	1157	Open in IMG/M
3300020583\|Ga0210401_11035359	Not Available	680	Open in IMG/M
3300020583\|Ga0210401_11156340	Not Available	632	Open in IMG/M
3300021088\|Ga0210404_10684749	Not Available	584	Open in IMG/M
3300021170\|Ga0210400_10219529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1549	Open in IMG/M
3300021178\|Ga0210408_10211739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1542	Open in IMG/M
3300021178\|Ga0210408_10460936	Not Available	1011	Open in IMG/M
3300021178\|Ga0210408_10471934	Not Available	998	Open in IMG/M
3300021180\|Ga0210396_11647624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	523	Open in IMG/M
3300021402\|Ga0210385_11517645	Not Available	512	Open in IMG/M
3300021403\|Ga0210397_10614326	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300021403\|Ga0210397_11094928	Not Available	619	Open in IMG/M
3300021404\|Ga0210389_10525999	All Organisms → cellular organisms → Bacteria → Proteobacteria	930	Open in IMG/M
3300021406\|Ga0210386_10358911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1253	Open in IMG/M
3300021406\|Ga0210386_10587961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	962	Open in IMG/M
3300021420\|Ga0210394_10919720	Not Available	760	Open in IMG/M
3300021432\|Ga0210384_10421705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1202	Open in IMG/M
3300021432\|Ga0210384_11741767	Not Available	528	Open in IMG/M
3300021475\|Ga0210392_10584243	Not Available	828	Open in IMG/M
3300021559\|Ga0210409_10742434	Not Available	853	Open in IMG/M
3300021560\|Ga0126371_10839588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1064	Open in IMG/M
3300021560\|Ga0126371_12468762	Not Available	629	Open in IMG/M
3300022717\|Ga0242661_1162936	Not Available	507	Open in IMG/M
3300025906\|Ga0207699_10901323	Not Available	652	Open in IMG/M
3300025915\|Ga0207693_10205173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1550	Open in IMG/M
3300025916\|Ga0207663_11562193	Not Available	531	Open in IMG/M
3300025928\|Ga0207700_10237732	Not Available	1551	Open in IMG/M
3300026489\|Ga0257160_1070895	Not Available	616	Open in IMG/M
3300026551\|Ga0209648_10269577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	1246	Open in IMG/M
3300026551\|Ga0209648_10437034	Not Available	824	Open in IMG/M
3300026551\|Ga0209648_10438827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	821	Open in IMG/M
3300026998\|Ga0208369_1034281	Not Available	505	Open in IMG/M
3300026999\|Ga0207949_1012643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	766	Open in IMG/M
3300027173\|Ga0208097_1044050	Not Available	519	Open in IMG/M
3300027521\|Ga0209524_1021191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1343	Open in IMG/M
3300027537\|Ga0209419_1014432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1389	Open in IMG/M
3300027603\|Ga0209331_1073900	Not Available	849	Open in IMG/M
3300027605\|Ga0209329_1066325	Not Available	777	Open in IMG/M
3300027684\|Ga0209626_1026675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1399	Open in IMG/M
3300027903\|Ga0209488_10089999	Not Available	2292	Open in IMG/M
3300027903\|Ga0209488_10295496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1210	Open in IMG/M
3300028047\|Ga0209526_10564220	Not Available	734	Open in IMG/M
3300028047\|Ga0209526_10955711	Not Available	516	Open in IMG/M
3300029701\|Ga0222748_1075043	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300030991\|Ga0073994_11950912	Not Available	667	Open in IMG/M
3300031057\|Ga0170834_100776611	Not Available	513	Open in IMG/M
3300031231\|Ga0170824_100468954	Not Available	670	Open in IMG/M
3300031231\|Ga0170824_109384120	Not Available	596	Open in IMG/M
3300031231\|Ga0170824_122093820	All Organisms → cellular organisms → Bacteria → Proteobacteria	690	Open in IMG/M
3300031231\|Ga0170824_126469217	Not Available	504	Open in IMG/M
3300031446\|Ga0170820_12331795	Not Available	556	Open in IMG/M
3300031446\|Ga0170820_14691898	Not Available	666	Open in IMG/M
3300031753\|Ga0307477_10397146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	945	Open in IMG/M
3300031754\|Ga0307475_10841433	Not Available	727	Open in IMG/M
3300031962\|Ga0307479_10219595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1874	Open in IMG/M
3300032180\|Ga0307471_101106434	All Organisms → cellular organisms → Bacteria → Proteobacteria	958	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.30%
Aquatic	Environmental → Aquatic	3.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.30%
Freshwater	Environmental → Aquatic → Freshwater	3.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.37%
Loam	Environmental → Terrestrial → Soil → Loam	25.93%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.70%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	40.74%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.37%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.52%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.26%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.41%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.56%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	13.89%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.41%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	6.48%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.56%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.70%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.70%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026998	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF046 (SPAdes)	Environmental	Open in IMG/M
3300026999	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF044 (SPAdes)	Environmental	Open in IMG/M
3300027173	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF036 (SPAdes)	Environmental	Open in IMG/M
3300027521	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027537	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300029701	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_01992740	2170459010	Grass Soil	MNRVRSGFHDINRAFVTADARVEYRFGGRRGTVNASFQTSEAEVIFDDDADLWLVEWDHICKLPP
JGIcombinedJ26739_1000777863	3300002245	Forest Soil	MGGVQMTRLKPGFHDSNGEFVTADTRVKYRFGARHGTVNAVFQDGEAEVIFDDNGDLDLVKWKYLCKLACWVDKM*
JGIcombinedJ26739_1007240381	3300002245	Forest Soil	MTRLERGFYDGNGEFVTADERVECRLGGGRGTVNAIFQGGEAEVMFDDDADLSLVKWD
JGI25617J43924_101614121	3300002914	Grasslands Soil	MTRLKPGFHDSNGEFVTADTRVEYRFGARHGTVNAIFQDGQAEVIFDDNGDLDLVKWKHLCKLACWVDKM*
JGIcombinedJ51221_100731883	3300003505	Forest Soil	MLTAQRTIRRGGVQMTRLERGFYDGNGEFVTADERVECRLGGRGTVNAIFQGGEAEVMFDDDADLSLVKWDHIWKLPSWAQKT*
JGIcombinedJ51221_100753091	3300003505	Forest Soil	MTRLERGFYDGNGEFVTADERVECRFGGGRGTVNAIFQSGEAEVMFDDDADLSLVKWDQIWKLPSGAQKT*
Ga0062385_101230382	3300004080	Bog Forest Soil	MTRLERGFYDGNGEFVTADERVECRLGGGRGTVNAIFQGGEAEVMFDDDADLSLVKWDHIWKLPSWAQKT*
Ga0062389_1022998262	3300004092	Bog Forest Soil	MTKLKPGFYDSNGDFVTADTRVEYRFGARHGTVNAIFQDGEAEVVFDDNGDLDLVKWKHLCKLALWVDKK*
Ga0062388_1003854712	3300004635	Bog Forest Soil	MLTAQRTIRRGGVQMTRLERGFYDGNGEFVTADERVECRLGGGRGTVNAIFQGGEAEVMFDDDADLSLVKWDHIWKLPSWAQKT*
Ga0062388_1011897762	3300004635	Bog Forest Soil	MTRLKPGFHDSNGEFVTSDTRVEYCFGARHGTVNAVFYDGEAEVTFDDNGDIDLVDWKHICKLTFWGR*
Ga0070709_100477781	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MTRLKPGFHDSNGEFVTADTRVKYRFGVRHGTVNAIFQDGEAEVIFDDNGDLELVKWKYLCKLACWVDKM*
Ga0070713_1004460791	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTRLKPGFHDSNGEFVTADTRVKYRFGARHGTVNAVFQDGKAEVIFDDNGDLELVKWKYLCKLACWVDKM*
Ga0066705_102587632	3300005569	Soil	GVQMTRLEPGFYDSNGEFVTADTRVKYRFGARPGTVNAIFQDGEAEVIFDDNGDLDLVKWKHICKLAC*
Ga0070762_104746412	3300005602	Soil	MTRLERGFYDGNGEFVTADERVECRLGGRGTVNAIFQGGEAEVMFDDDADLSLVKWDHIWKLPSWAQKT*
Ga0070762_105887971	3300005602	Soil	MTRLKPGFHDSNGEFVTADARVEYRFGARHGTVNAVFQDDEAEVIFDDNGDLDLVKWKYLRKLACWV
Ga0070763_101773492	3300005610	Soil	MTRLKPGFHDSNGEFVTADTRVKYRFGARHGTVNAVFQDGEAEVIFDDNGDLDLVKWKYLCKLACWVDKM*
Ga0066903_1017054481	3300005764	Tropical Forest Soil	MNRAAAGFHDANGEFVTADTRVEHRFEGRQGTVNAIFQNGEAEVIFDDGDLDLVEWDHICKLSSWGEEI*
Ga0070712_1005398081	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTRLKPGFHDSNGEFVTAGTRVKYRFGVRHGTVNAIFQDGEAEVIFDDNGDLELVKWKYLCKLACWVDKM*
Ga0070712_1011003752	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTRLERGFYDGNGEFVTADERVECRLGGGRGTVNAIFQGGEAEVMFDDDADLSLVKWDHIWKLPSWA
Ga0070765_1022866831	3300006176	Soil	HAALGLTLSLNRTISMGGVQMTRLKPGFHDSNGEFVTADTRVKYRFGARHGTVNAVFQDGEAEVIFDDNGDLDLVKWKYLCKLACWVDKM*
Ga0066659_111022801	3300006797	Soil	MTRLKPGFHDSNGEFVTADTRVEYRFGARHGTVNAIFQDGQAEVIFDDNGDLDLVKWKHLCKLALWVDKM*
Ga0066660_105345611	3300006800	Soil	MNRVRSGFHDINREFVTADARVQYRFEGRCGTVNAIFQTGEAEVIFDDDADLWLVEWDHICKLPP*
Ga0066709_1004875312	3300009137	Grasslands Soil	MTRLKPGFRDSNGEFVTADARVEYRFGGRRETVNAIFQDGEAEVMFDDDADLYLVKWDYIWKLPSWAEKT*
Ga0099792_100558861	3300009143	Vadose Zone Soil	MTRLKPGFYDSNGEFVTADTRVEYRFGARHGTVNAIFQDGEAEVIFDDNGDLDLVKWKHICKLAC*
Ga0099792_100578521	3300009143	Vadose Zone Soil	MNRVRSVFHDINREFVTADARVEYRFGGRRGSVNAIFQTGEAEVIFDDDADLWLVEWDHICKLPP*
Ga0099792_101427813	3300009143	Vadose Zone Soil	ERGFYDGNGEFVTADERVEYRFGGRRGTVNAIFQGGEAEVMFDDDADLSLVKWDHIWKLPSWAQKT*
Ga0126374_105603912	3300009792	Tropical Forest Soil	MDRFKAGFHDCAGQFVTADSRVEYRFGGRRGTVNAIFQNGEAEVVFDDDADLYLVKWDHIRNLAS*
Ga0126373_128729381	3300010048	Tropical Forest Soil	MNRCTAGFHDANGEFVTADTRVEHRFEGRRGTVNAIFQNGEAEVLFDDGDLDLVKWDHI
Ga0126370_114601581	3300010358	Tropical Forest Soil	RVRGGFAMNRAAAGFHDANGEFVTADTRVEHRFEGRQGTVNAIFQDGEAEVIFDDGDLDLVEWDHICKLSSWGEEI*
Ga0126381_1001344634	3300010376	Tropical Forest Soil	MNRAAAGFHDANGEFVTADTRVEHRFEGRQGTVNAIFQDGEAEVIFDDGDLDLVEWDHICKLSSWGEEI*
Ga0126383_102538912	3300010398	Tropical Forest Soil	MDRFKAGFHDCGGQFVTADSRVEYRFGGRRGTVNAIFQNGEAEVVFDDDADLYLVKWDHIRNLAS*
Ga0150983_159864891	3300011120	Forest Soil	FVTADERVECRLGGRGTVNAIFQDGEAEVIFDDDAGLYLVKWDHICKLPSCAEKNMKGFR
Ga0137382_106404651	3300012200	Vadose Zone Soil	MTRLKPGFHDSNGEFVTADTRVKYRFGARHGTVNAIFQDGQAEVIFDDNGDLDLVKWKHLCKLA
Ga0137362_114944171	3300012205	Vadose Zone Soil	LSRTSSMGGVQMTRLKPGFRDSNGEFVTADARVEYRFGGRRETVNAIFQDGEAEVMFDDDADLYLVKWDYIWKLPSWAEKT*
Ga0137376_109492861	3300012208	Vadose Zone Soil	MGGVQMTRLKPGFHDSNGEFVTADTRVKYRFGARHGTVNAVFQDGEAEVIFDDNGDLHLVKRKYLCKLACWVDKM*
Ga0137377_108373991	3300012211	Vadose Zone Soil	DSNGEFVTADARVEYRFGGRRETVNAIFQDGEAEVMFDDDADLYLVKWDYIWKLPSWAEKT*
Ga0137360_106156311	3300012361	Vadose Zone Soil	MTKLKSGFYDSNGEFVTADTRVESRFGARHGTVNAIFQDGEAEVIFDDNGDLDLVKCKYIRKLTLGVDKL*
Ga0137358_100552684	3300012582	Vadose Zone Soil	MTRLKPGFHDSNGEFVTADTRVEYRFGARHGTVNAVFQDGEAEVIFDDNGDLDLVKWKHLCKLALWVDKM*
Ga0137395_107131062	3300012917	Vadose Zone Soil	MTRLKPGFYDSNGEFVTADTRVEYRFGARHGTVNAIFQDGEAEVIFDDNGDLDLVKWKYLCKLACWVDKT*
Ga0137359_102209812	3300012923	Vadose Zone Soil	MTRLKPGFYDSNGEFVTADTRVEYRFGARHGTVNAVFQDGEAEVIFDDNGDLDLVKWKHLCKLALWVDKM*
Ga0164304_112743391	3300012986	Soil	KAESVSRVFHDNGEFVTADARVEYRFGARHGTVNAIFHDGEAEVIFDDDADLYLVKWDHIWKLPSWAQKT*
Ga0137418_108116731	3300015241	Vadose Zone Soil	MTRLKPGFYDSNGEFVTADTRVEYRFGARHGTVNAIFQDGQAEVIFDDNGDLDLVKWKHIRKIDPW
Ga0066662_114817702	3300018468	Grasslands Soil	MTRLEPGFYDSNGEFVTADTRVKYRFGARPGTVNAIFQDGEAEVIFDDNGDLDLVKWKHICKLA
Ga0210407_106652051	3300020579	Soil	LSLNRTISMGGVQMTRLKPGFHDSNGEFVTADTRVKYRFGARRGTVNAIFQDGEAEVIFDDNGDLDLVKWKHLCKLALWGDNM
Ga0210407_111792511	3300020579	Soil	MTRLERGFYDGNGEFVTADERVECRLGGGRGTVNAIFQGGEAEVMFDDDADLSLVKWDHIWKLPSWAQKT
Ga0210403_100771453	3300020580	Soil	MTRLKPGFHDSNGEFVTADARVEYRFGARHETVNAIFQDGEAEVIFDDDAGLYMVKWDHICKLPSWAERT
Ga0210399_100958533	3300020581	Soil	VGHAALGLTLSLNHTISMGGVQMTRLKPGFHDSNGEFVTADTRVKYRFGARHGTVNAVFQDGEAEVIFDDNGDLDLVKWKYLCKLTC
Ga0210399_103806402	3300020581	Soil	MTRLERGFYDGNGEFVTADERVECRLGGRGTVNAIFQGGEAEVMFDDDADLSLVKWDHIWKLPSWAQKHEKLLPAIRPQ
Ga0210395_106449632	3300020582	Soil	MTRLERGFYDGNGEFVTADERVECRLGGRGTVNAIFQGGEAEVMFDDDADLSLVKWDHIWKLPSWAQ
Ga0210395_107059011	3300020582	Soil	VGHAALGLTLSLNRTISMGGVQMTRLKPGFHDSNGEFVTADTRVKYRFGARHGTVNAVFQDGEAEVIFDDNGDLDLVKWKYLCKLACWVDKM
Ga0210401_100251517	3300020583	Soil	MTRLKPGFHDSNGEFVTADARVEYRFGARHGTVNAIFQDGEAEVIFDDDAGLYMVKWDHICKLPSWAERT
Ga0210401_103898982	3300020583	Soil	MTRLQPGFHDNNGEFVIADARVEYRFGARHGTVNAIFQYGEAEVIFDDDAGLYLVKWDHICKLPSCAEKT
Ga0210401_104455852	3300020583	Soil	MLTAQRTIRRGGVQMTRLERGFYDGNGEFVTADERVECRLGGRGTVNAIFQGGEAEVMFDDDADLSLVKWDHIWKLPSWAQKT
Ga0210401_110353591	3300020583	Soil	MNRVRSGFHDINREFVTADARVEYRFGGRRGTVNASFQTGEAEVIFDDDADLWLVEWDHICKLPP
Ga0210401_111563401	3300020583	Soil	RYSCRGDTRGRSRLVGHAYSRTLSLNRTISMGGVQMTRLKPGFHDSNGEFVTADTRVKYRFGARRGTVNAIFQDGEAEVIFDDNGDLDLVKWKHLCKLALWGDKM
Ga0210404_106847491	3300021088	Soil	MTRLKPGFHDSNGEFVTADTRVKYRFGARHGTVNAVFQDGEAEVIFDDNGDLDLVKWKYLCKLTC
Ga0210400_102195292	3300021170	Soil	MTRLKPGFHDSNGEFVTADARVEYRFGARHGTVNAIFQDGEAEVIFDDNGDLDLVKWKHICKLACWVDKL
Ga0210408_102117393	3300021178	Soil	MTRLERGFYDGNGEFVTADERVECRLGGRGTVNAIFQGGEAEVMFDDDADLSLVKWDHIWKLPSWA
Ga0210408_104609362	3300021178	Soil	MTRLKPGFYDSNGEFVTADTRVEYRFGARHGTVNAIFQDGEAEVIFDDNGDLDLVKWKHICKLACWVDKL
Ga0210408_104719341	3300021178	Soil	LTLSLNRTISMGGVQMTRLKPGFHDSNGEFVTADTRVKYRFGARHGTVNAVFQDGKAEVIFDDNGDLELVKWKYLCKLACWVDKM
Ga0210396_116476241	3300021180	Soil	MTRLKPGFHDSNGEFVTADARVEYRFGARHGTVNAIFQDGEVEVTFDDNGDIDLVKWKHICKIGVDKL
Ga0210385_115176451	3300021402	Soil	MTRLERGFYDGNGEFVTADERVECRLGGRGTVNAIFQGGEAEVMFDDDADLSLVKWDHIWKLPSWAQKT
Ga0210397_106143262	3300021403	Soil	GLTLSLNRTISMGGVQMTRLKPGFHDSNGEFVTADTRVKYRFGARHGTVNAVFQDGEAEVIFDDNGDLDLVKWKYLCKLACWVDKM
Ga0210397_110949281	3300021403	Soil	MTRLKPGFHDSNGEFVTADTRVKYRFGARRGTVNAIFQDGEAEVIFDDNGDLDLVKWKHLCKLALWGDKM
Ga0210389_105259991	3300021404	Soil	VLLNWGSQMTRLQPGFHDNNGEFVIADARVEYRFGARHGTVNAIFQYGEAEVIFDDDAGLYLVKWDHICKLPSCAAKT
Ga0210386_103589112	3300021406	Soil	MTRLKPGFHDSNGEFVTADTRVKYRFGARHGTVNAVFQDGEAEVISDDNGDLDLVKWKYLCKLACWVDKM
Ga0210386_105879613	3300021406	Soil	RTISMGGVQMTRLKPGFHDSNGEFVTADTRVKYRFGARRGTVNAIFQDGEAEVIFDDNGDLDLVKWKHLCKLALWGDKM
Ga0210394_109197203	3300021420	Soil	GFHDSNGEFVTADTRVKYRFGARHGTVNAVFQDGEAEVIFDDNGDLDLVKWKYLCKLTC
Ga0210384_104217052	3300021432	Soil	MTRLERGFYDGNGEFVTADERVECRFGGGRGTVNAIFQSGEAEVMFDDDADLSLVKWDQIWKLPSGAQKT
Ga0210384_117417671	3300021432	Soil	MTRLERGFYDGNGEFVTADERVECRLGGRGTVNAIFQGGEAEVMFDDDADLSLVKWDHIWKLPSWAQKTWKTPA
Ga0210392_105842432	3300021475	Soil	HAYSRTLSLNRTISMGGVQMTRLKPGFHDSNGEFVTADTRVKYRFGARHGTVNAVFQDGEAEVIFDDNGDLDLVKWKYLCKLTC
Ga0210409_107424343	3300021559	Soil	VGHAALGLTLSLNRTISMGGVQMTRLKPGFHDSNGEFVTADTRVKYRFGARHGTVNAVFQDGEAEVIFDDNGDLDLVKWKYLCKLTC
Ga0126371_108395882	3300021560	Tropical Forest Soil	MNRAAAGFHDANGEFVTADTRVEHRFEGRQGTVNAIFQDGEAEVIFDDGDLDLVEWDHICKLSSWGEEI
Ga0126371_124687621	3300021560	Tropical Forest Soil	MDRFKAGFHDCEGQFVTADSRVEYRFGGRRGTVNAIFQNGEAEVVFDDDADLYLVKWDHIRNLAS
Ga0242661_11629361	3300022717	Soil	MTRLERGFYDGNGEFVTADERVECRLGGRGTVNAIFQGGEAEVMFDDDADLSLVKWDQIWKLPSGAQKT
Ga0207699_109013232	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MTRLKPGFHDSNGEFVTADTRVKYRFGVRHGTVNAIFQDGEAEVIFDDNGDLELVKWKYLCKLACWVDKM
Ga0207693_102051733	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VGHAALGLTLSLNRTISMGGVQMTRLKPGFHDSNGEFVTAGTRVKYRFGVRHGTVNAIFQDGEAEVIFDDNGDLELVKWKYLCKLACWVDKM
Ga0207663_115621931	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MTRLKPGFHDSNGEFVTAGTRVKYRFGVRHGTVNAIFQDGEAEVIFDDNGDLELVKWKYLCKLACWVDKM
Ga0207700_102377322	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MTRLTPGFHDSNGEFVTADARVEYRFGARHGTVNAIFQDGEAEVIFDDNGDLELVKWKYLCKLACWVDKM
Ga0257160_10708951	3300026489	Soil	MTRLKPGFYDSNGEFVTADTRVEYRFGARHGTVNAIFQDGEAEVIFDDNGDLDLVKWKHLCKLGLWVDKT
Ga0209648_102695771	3300026551	Grasslands Soil	MTKLKPGFYDSNGEFVTADTRVEYRFGARHGTVSAIFQDGEAEVIFDDNGDLDLVKCKYIRRLTLGVDKL
Ga0209648_104370342	3300026551	Grasslands Soil	MTRLKPGFHDSNGEFVTADTRVEYRFGARHGTVNAIFQDGQAEVIFDDNGDLDLVKWKHLCKLALWVDKM
Ga0209648_104388271	3300026551	Grasslands Soil	VGHAALGLTLNLNRTISMGGVQMTRLKPGFYDSNGEFVTADTRVEYRFGARHGTVNAIFQDGEAEVIFDDNGDLDLVKWKHICKLACWVDKL
Ga0208369_10342811	3300026998	Forest Soil	VGHAALGLTLSLNRTVSMGGVQMTRLKPGFHDSNGEFVTADTRVKYRFGARHGTVNAVFQDGEAEVIFDDNGDLDLVKWKYLRKLACWVDKM
Ga0207949_10126431	3300026999	Forest Soil	MTRLKPGFHDSNGEFVTADARVEYRFGARHGTVNAVFQDDEAEVIFDDNGDLDLVKWKYLCKL
Ga0208097_10440501	3300027173	Forest Soil	MTRLKPGFHDSNGEFVTADTRVKYRFGARHGTVNAIFQDGEAEVIFDDNGDLDLVKCKYIRKLTLGVYKL
Ga0209524_10211911	3300027521	Forest Soil	MTRLERGFYDGNGEFVTADERVECRLGGGRGTVNAIFQGGEAEVMFDDDADLSLVKWDHIWKLPSWAQQT
Ga0209419_10144323	3300027537	Forest Soil	VGHAALGLTLSLNRTISMGGVQMTRLKPGFHDSNGEFVTADTRVKYRFGARHGTVNAVFQDGEAEVIFDDNELEFARPLRARRLG
Ga0209331_10739002	3300027603	Forest Soil	MLTAQRTVRRGGVQMTRLERGFYDGNGEFVTADERVECRLGGRGTVNAIFQGGEAGVMFDDDADLSLVKWDHIWKLPSWAQKT
Ga0209329_10663251	3300027605	Forest Soil	VGHAALGLTLSLNRTISMGGVQMTRLKPGFHDSNGEFVTADTRVKYRFGARHGTVNAVFQDGEAEVIFDDNGDLDLVKCKYLCKLACWVDKM
Ga0209626_10266751	3300027684	Forest Soil	VGHAALGLTLSLNRTISMGGVQMTRLKPGFHDSNGEFVTADTRVKYRFGARHGTVNAVLQDGEAEVIFDDNGDLDLVKWKYLCKLACWVDKM
Ga0209488_100899993	3300027903	Vadose Zone Soil	MNRVRSGFHDINREFVTADARVEYRFGGRRGTVNAIFQTGEAEVIFDDDADLWLVEWDHICKLPP
Ga0209488_102954962	3300027903	Vadose Zone Soil	MTRLKPGFYDSNGEFVTADTRVEYRFGARHGTVNAIFQDGEAEVIFDDNGDLDLVKWKHICKLAC
Ga0209526_105642201	3300028047	Forest Soil	VGHAALGLTLSLNRTISMGGVQMTKLKPGFYDSNGEFVTADTRVEYRFGARHGTVNAIFQDGEAEVIFDDNGDLDLVKWKHICKLACWVDKL
Ga0209526_109557111	3300028047	Forest Soil	VGHAYSRTQALVVLLNGGSQMTRLKPGFHDSNGEFVTADARVEYRFGARHGTVNAIFQDGEAEVIFDDDAGLYLVKWDHICKLPSWAEKT
Ga0222748_10750431	3300029701	Soil	PGFHDSNGEFVTADARVEYRFGARHGTVNAIFQDEAEVIFDDDAGLYLVKWDDICKLPSWAEET
Ga0073994_119509121	3300030991	Soil	MTRLERGFYDGNGEFVTADERVECRFGGRRGTVNAIFQNGEAEVMFDDDADLSLVKWDHIWKLPSWAEKT
Ga0170834_1007766112	3300031057	Forest Soil	MTGLQPGFHDNNGEFVTADARVEYRFGARYGTMIAIFQDGEAEVIFDDDAGLYLVKWDHICKLPSWAEKT
Ga0170824_1004689542	3300031231	Forest Soil	VGHAALGLTLSLNHTISMGGVQMTRLKPGFHDSNGEFVTADTRVKYRFGARHGTVNAVFRDGEAEVIFDDNGDLDLVKWKYLCKLACWVDKM
Ga0170824_1093841201	3300031231	Forest Soil	MTGLQPGFHDNNGEFVTADARVEYRFGARYGTMIAIFQDGEAEVIFDDDAGLYLVKWDDICKLPSWAEKT
Ga0170824_1220938202	3300031231	Forest Soil	GMLTAQRTIRRGGVQMTRLERGFYDGNGEFVTADERVECRLGGGRGTVNAIFQGGEAEVMFDDDADLSLVKWDHIWKLPSWAQKT
Ga0170824_1264692171	3300031231	Forest Soil	MTRLKPGFHDSNGEFVTADARVEYRFGARRGTVNAIFQDGEAEVIFDDDADLCLVKWADICKLPSWAEKT
Ga0170820_123317951	3300031446	Forest Soil	MTRLERGFYDGNGEFVTADERVECRLGGGRGTVNAIFQGGEAEVMFDDDADLSLVKWDHIWKLPSWAQK
Ga0170820_146918981	3300031446	Forest Soil	MLTAGAKPCLSRTTQWGSQITRLKPGFHDSNGEYVTADARVEYRFGARHATVNAIFQDGEAEVIFDDDAGLYLVKWDHICKLPSWAEKT
Ga0307477_103971461	3300031753	Hardwood Forest Soil	MTRLKPGFHDSNGEFVTADTRVEYRFGARHGTVNAVFQDGEAEVIFDDNGDLDLVKWKYLRKLACWVDKM
Ga0307475_108414331	3300031754	Hardwood Forest Soil	MTRLKPGFHDSNGEFVTADTRVEYRFGARHGTVNAVFQDGEAEVIFDDNGDLDLVKWKYLCKLTC
Ga0307479_102195951	3300031962	Hardwood Forest Soil	MTRLKPGFHDSNGEFVTADARVEYRFGARHGTVNAVFQDGEAEVIFDDNGDLDLVKWKYLRKLACWVDKM
Ga0307471_1011064341	3300032180	Hardwood Forest Soil	GNGEFVTADERVECRLGGRGTVNAIFQGGEAEVMFDDDADLSLVKWDHIWKLPSWAQKT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090707

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences