 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F090679 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 108 |
| Average Sequence Length | 43 residues |
| Representative Sequence | VLAVAHVLGLLLATFALTYALPVGCSLLMGDGLWPKFLLAAALTA |
| Number of Associated Samples | 97 |
| Number of Associated Scaffolds | 108 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 82.41 % |
| % of genes near scaffold ends (potentially truncated) | 99.07 % |
| % of genes from short scaffolds (< 2000 bps) | 87.96 % |
| Associated GOLD sequencing projects | 95 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.53 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (75.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.630 % of family members) |
| Environment Ontology (ENVO) | Unclassified (25.000 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (53.704 % of family members) |
| ⦗Top⦘ |
| ⦗Top⦘ |
| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 53.42% β-sheet: 0.00% Coil/Unstructured: 46.58% | Feature Viewer |
|
|
|||||
| Powered by Feature Viewer | |||||
| Structure Viewer | |
|---|---|
|
| |
| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.53 |
| Powered by PDBe Molstar | |
| ⦗Top⦘ |
| Pfam ID | Name | % Frequency in 108 Family Scaffolds |
|---|---|---|
| PF02254 | TrkA_N | 61.11 |
| PF02080 | TrkA_C | 30.56 |
| PF13361 | UvrD_C | 4.63 |
| PF01594 | AI-2E_transport | 2.78 |
| PF02628 | COX15-CtaA | 0.93 |
| COG ID | Name | Functional Category | % Frequency in 108 Family Scaffolds |
|---|---|---|---|
| COG0628 | Predicted PurR-regulated permease PerM | General function prediction only [R] | 2.78 |
| COG1612 | Heme A synthase | Coenzyme transport and metabolism [H] | 0.93 |
| ⦗Top⦘ |
| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 75.00 % |
| All Organisms | root | All Organisms | 25.00 % |
| Visualization |
|---|
| Powered by ApexCharts |
| ⦗Top⦘ |
| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 29.63% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 6.48% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 6.48% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 5.56% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 4.63% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 4.63% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 3.70% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 3.70% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 3.70% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 2.78% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 2.78% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 2.78% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 1.85% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 1.85% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 1.85% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 1.85% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 1.85% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 1.85% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 0.93% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 0.93% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 0.93% |
| Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 0.93% |
| Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland | 0.93% |
| Prmafrost Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil | 0.93% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 0.93% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 0.93% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 0.93% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil | 0.93% |
| Plant Litter | Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter | 0.93% |
| Biofilm | Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm | 0.93% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 0.93% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300002245 | Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027) | Environmental | Open in IMG/M |
| 3300002915 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm | Environmental | Open in IMG/M |
| 3300005175 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 | Environmental | Open in IMG/M |
| 3300005439 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG | Environmental | Open in IMG/M |
| 3300005454 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 | Environmental | Open in IMG/M |
| 3300005569 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 | Environmental | Open in IMG/M |
| 3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
| 3300006046 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101 | Environmental | Open in IMG/M |
| 3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Environmental | Open in IMG/M |
| 3300006176 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 | Environmental | Open in IMG/M |
| 3300006797 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108 | Environmental | Open in IMG/M |
| 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Host-Associated | Open in IMG/M |
| 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Host-Associated | Open in IMG/M |
| 3300010303 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015 | Environmental | Open in IMG/M |
| 3300010320 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015 | Environmental | Open in IMG/M |
| 3300010361 | Tropical forest soil microbial communities from Panama - MetaG Plot_23 | Environmental | Open in IMG/M |
| 3300010362 | Tropical forest soil microbial communities from Panama - MetaG Plot_22 | Environmental | Open in IMG/M |
| 3300010376 | Tropical forest soil microbial communities from Panama - MetaG Plot_28 | Environmental | Open in IMG/M |
| 3300010396 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2 | Environmental | Open in IMG/M |
| 3300012210 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG | Environmental | Open in IMG/M |
| 3300012930 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012971 | Tropical forest soil microbial communities from Panama - MetaG Plot_1 | Environmental | Open in IMG/M |
| 3300012989 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG | Environmental | Open in IMG/M |
| 3300015054 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
| 3300016341 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 | Environmental | Open in IMG/M |
| 3300016445 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 | Environmental | Open in IMG/M |
| 3300017959 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG | Environmental | Open in IMG/M |
| 3300017973 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG | Environmental | Open in IMG/M |
| 3300017993 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3 | Environmental | Open in IMG/M |
| 3300017994 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2 | Environmental | Open in IMG/M |
| 3300018060 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG | Environmental | Open in IMG/M |
| 3300018089 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG | Environmental | Open in IMG/M |
| 3300021170 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M | Environmental | Open in IMG/M |
| 3300021171 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M | Environmental | Open in IMG/M |
| 3300021403 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O | Environmental | Open in IMG/M |
| 3300021420 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M | Environmental | Open in IMG/M |
| 3300021433 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O | Environmental | Open in IMG/M |
| 3300021474 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O | Environmental | Open in IMG/M |
| 3300021476 | Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2) | Environmental | Open in IMG/M |
| 3300021477 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O | Environmental | Open in IMG/M |
| 3300021479 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M | Environmental | Open in IMG/M |
| 3300022894 | Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L049-202B-5 | Environmental | Open in IMG/M |
| 3300025903 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025916 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300026281 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes) | Environmental | Open in IMG/M |
| 3300026295 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes) | Environmental | Open in IMG/M |
| 3300026298 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes) | Environmental | Open in IMG/M |
| 3300026305 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes) | Environmental | Open in IMG/M |
| 3300026308 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes) | Environmental | Open in IMG/M |
| 3300026376 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-B | Environmental | Open in IMG/M |
| 3300026548 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes) | Environmental | Open in IMG/M |
| 3300027502 | Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027610 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027667 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027826 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027829 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027867 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027879 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes) | Environmental | Open in IMG/M |
| 3300028775 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2 | Environmental | Open in IMG/M |
| 3300028792 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S | Environmental | Open in IMG/M |
| 3300031027 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_3 | Environmental | Open in IMG/M |
| 3300031047 | Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1B (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031057 | Oak Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031544 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26 | Environmental | Open in IMG/M |
| 3300031679 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23 | Environmental | Open in IMG/M |
| 3300031708 | FICUS49499 Metagenome Czech Republic combined assembly | Environmental | Open in IMG/M |
| 3300031715 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05 | Environmental | Open in IMG/M |
| 3300031720 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515 | Environmental | Open in IMG/M |
| 3300031740 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05 | Environmental | Open in IMG/M |
| 3300031744 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2) | Environmental | Open in IMG/M |
| 3300031751 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24 | Environmental | Open in IMG/M |
| 3300031753 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515 | Environmental | Open in IMG/M |
| 3300031765 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22 | Environmental | Open in IMG/M |
| 3300031771 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19 | Environmental | Open in IMG/M |
| 3300031777 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24 | Environmental | Open in IMG/M |
| 3300031778 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24 | Environmental | Open in IMG/M |
| 3300031781 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20 | Environmental | Open in IMG/M |
| 3300031782 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20 | Environmental | Open in IMG/M |
| 3300031793 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21 | Environmental | Open in IMG/M |
| 3300031819 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21 | Environmental | Open in IMG/M |
| 3300031835 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21 | Environmental | Open in IMG/M |
| 3300031890 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2) | Environmental | Open in IMG/M |
| 3300031910 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2) | Environmental | Open in IMG/M |
| 3300032001 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2) | Environmental | Open in IMG/M |
| 3300032042 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26 | Environmental | Open in IMG/M |
| 3300032067 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22 | Environmental | Open in IMG/M |
| 3300032091 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25 | Environmental | Open in IMG/M |
| 3300032160 | Sb_50d combined assembly (MetaSPAdes) | Environmental | Open in IMG/M |
| 3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
| 3300032805 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2 | Environmental | Open in IMG/M |
| 3300032829 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3 | Environmental | Open in IMG/M |
| 3300032955 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5 | Environmental | Open in IMG/M |
| 3300033134 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2 | Environmental | Open in IMG/M |
| 3300033290 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15 | Environmental | Open in IMG/M |
| 3300033808 | Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_20 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGIcombinedJ26739_1003635792 | 3300002245 | Forest Soil | VLAVAHFLGLLLATFALAYALPVACSLAMADGLWPTFLLAAALTAGCGIVLAGATLRF |
| JGIcombinedJ26739_1011918862 | 3300002245 | Forest Soil | VLAVAHVLGLLLAFFGATYLLPIGCSIFTGDGLALFFVVA |
| JGI25387J43893_10047091 | 3300002915 | Grasslands Soil | VLAVAHVLGLLLATFALTYALPVGCSLLMGDGLWPKFLLAAALTA |
| Ga0066673_100275023 | 3300005175 | Soil | VPAVAHVLGLLLATFALAYALPVGCSLLMGDGLWPKFLLA |
| Ga0070711_1013141351 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | VLAVAHVLGWLLASFALSYVLPIGCALLLGDGLWTRFLLAAAITAAV |
| Ga0066687_100175171 | 3300005454 | Soil | VLAVAHFLGLLLSSFALSYALPIGCSLLLADHLWPKFLLAAAITAGCGLALAIA |
| Ga0066705_103719642 | 3300005569 | Soil | VPAVAHVLGLLLATFALAYALPIGCSLLMGDGLWPKFLLAAALTA |
| Ga0066903_1073123561 | 3300005764 | Tropical Forest Soil | MLAVAHVLGSLLAAFALSCLAPLACSLIMADGLWRVFL |
| Ga0066652_1000695061 | 3300006046 | Soil | VPAVAHVLGLLLATFALAYALPVGCSLLMGDGLWPKFLLAAALTAGCGLVLA |
| Ga0070712_1020506661 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | VLAVAHVLGLLLASFALTYALPIGCALLLGDGLWTRFL |
| Ga0070765_1019701241 | 3300006176 | Soil | LLAVLHVLGLLLASFATSCLLPLACSLWYADGLWPHFLITA |
| Ga0066659_101932512 | 3300006797 | Soil | VLAVAHVLGLLLAAFGVTYILPIGCSVIMHDGLWP |
| Ga0105240_127070511 | 3300009093 | Corn Rhizosphere | VLAVAHVLGLLLATFGVTYVLPVGCSIIMEDGLWPQFL |
| Ga0105237_121627641 | 3300009545 | Corn Rhizosphere | MLAVAHVLGLLLAISGAAYALPIACSLIMGDGFAGIFLVA |
| Ga0134082_101710991 | 3300010303 | Grasslands Soil | VLAVAHVLGLLLATFALTYALPVGCSLLMGDGLWPKFL |
| Ga0134109_101343311 | 3300010320 | Grasslands Soil | VLAVAHVLGLLLATFALAYALPVGCSLLMGDGLWPKFL |
| Ga0126378_116608261 | 3300010361 | Tropical Forest Soil | VLSVAHVLGLLLATFALTYALPVACSLLLADGLWPRFLLAAAITAGCGV |
| Ga0126377_107603201 | 3300010362 | Tropical Forest Soil | VAAVAHALGLLLATFALTYLLPVGCSLLMGDGLWPQFVLAAALTAG |
| Ga0126381_1013607701 | 3300010376 | Tropical Forest Soil | VLAVAHVLGLLLVTFALVCLLPAGCSLLLADGLWTQFLLVAALSAACGGLLIA |
| Ga0134126_124656981 | 3300010396 | Terrestrial Soil | MLGVAHVLGLVLAIFGIAYALPTGCSIVMGDGLWPQFLLAAAINSG |
| Ga0137378_112733131 | 3300012210 | Vadose Zone Soil | VLAVAHVLGQLLAFFGATYLLPIGCSIFTGDGLALYFV |
| Ga0137407_105422491 | 3300012930 | Vadose Zone Soil | VLAVAHVLGLLLAFFGATYLLPIGCSIFTGDGLALFF |
| Ga0126369_115866342 | 3300012971 | Tropical Forest Soil | VLAVAHFLGLLLATFALTYLLPAGCSLLLGDPLWPKFLLAAAITAGA |
| Ga0164305_117795191 | 3300012989 | Soil | VLAVAHVLGLLLASFALTYALPIGCALLLRDGLTTRFLLAAAITA |
| Ga0137420_10346202 | 3300015054 | Vadose Zone Soil | VLAVAHFLGLLLATFALAYVLPIGCSLAMADGLWP |
| Ga0137420_11118361 | 3300015054 | Vadose Zone Soil | VLAVAHFLGLLLATFALAYVLPIGCSLAMADGLWPRPKFLLAAA |
| Ga0182035_107929442 | 3300016341 | Soil | VLAVAHVLGLLLAGFALTYPLPIGCSLLFGDGLAARFFLDAAIT |
| Ga0182038_114696162 | 3300016445 | Soil | VLAVAHVLGLLLAGFALTYALPIGCSLLFGDGLAARFL |
| Ga0182038_114792932 | 3300016445 | Soil | VLAVAHVLGLLLATFALTYLLPITCALLLGDPSWPRFLLAAAITASCGGLL |
| Ga0187779_110448741 | 3300017959 | Tropical Peatland | VLAVAHVLGLLLAAFALSCLPPVLCSLLLADGLAPRFL |
| Ga0187780_113162442 | 3300017973 | Tropical Peatland | VLAVAHVLGLLLAAFAFSCVPPVLCSLLLADGLAPRFLLAAAVTAGIGVAL |
| Ga0187823_100204251 | 3300017993 | Freshwater Sediment | VLAVAYLLGLLLATFALAYLLPVACSLLVGDNLWPQFLLSAAITAAAGALLA |
| Ga0187822_100268431 | 3300017994 | Freshwater Sediment | VLSVAYVLGLLLASFALTFALPVACSLAMGDGLWPKFLLAAACTAGA |
| Ga0187765_104663321 | 3300018060 | Tropical Peatland | MLAVAHFLGLLLASFALTYLLPVICSLAFGDGLAARFL |
| Ga0187774_101086122 | 3300018089 | Tropical Peatland | VLAVAYVLGLLLASFALSFALPIGCSLLMADGLWPKFLLAAAIA |
| Ga0210400_110023731 | 3300021170 | Soil | VLAVAHVLGLLLASFALTYALPIGCALLLGDGLWTRFLLAAA |
| Ga0210400_115648252 | 3300021170 | Soil | MLGVAHVLGLVLAIFGVAYVLPVGCSIIMGDGLWL |
| Ga0210405_101780941 | 3300021171 | Soil | VLAVAHVLGLLLATFALAYLLPLGCSLFYGDGLLAQFLAAA |
| Ga0210397_115234381 | 3300021403 | Soil | VLAVAHFLGLLLATFALAYALPVGCSLVMADGLWPKFLLTAA |
| Ga0210394_113703692 | 3300021420 | Soil | VLRVANVLGWLLATFGLACLLPVGCSLIMGDGQWPHLLLAAA |
| Ga0210391_115473622 | 3300021433 | Soil | VLAVAYALGLLLATFALSFALPIACSLLMEDGLWPKFLLAAALAAGCGLALAAATVRLK |
| Ga0210390_104062952 | 3300021474 | Soil | VLRVANVLGWLLATFALACLLPVGCSLIMGDGQWPR |
| Ga0210390_115285882 | 3300021474 | Soil | VLAVAHVLGLLLASFAASYLLPLLGSLWLGDGLALH |
| Ga0187846_104076591 | 3300021476 | Biofilm | VLTVAYVLGLLLASFALSFALPVLCSLVMGDGLWPKFLLAAACTAGAGLALAAATRRRRR |
| Ga0210398_109871072 | 3300021477 | Soil | VLAVAHVLGLLLATFALAYLLPVGCSLLFGDGLLVQF |
| Ga0210410_100852071 | 3300021479 | Soil | VLAVAHVLGLLLASFAASYLLPLLGSLWLGDGLALHFLM |
| Ga0247778_10251002 | 3300022894 | Plant Litter | VLAVAHVLGLLLAFFGATYALPLICSLVAGDGLALYLL |
| Ga0207680_108574491 | 3300025903 | Switchgrass Rhizosphere | VFAVAHVLGLLLASFAASYAAPLLCSLWLHDGLWEHFLL |
| Ga0207663_105474951 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | VLAVAHALGLLLATFALTYALPIGCSLLMGDGLWPQFLLAAALAA |
| Ga0207652_104037851 | 3300025921 | Corn Rhizosphere | VLGVAHVLGLLLAIFGVAYLLPVGCSIVTGDGLWPQFFIS |
| Ga0207664_103328851 | 3300025929 | Agricultural Soil | VLAVAHALGLLLATFALTYALPIGCSLLMGDGLWPQFLLAAALAAAGG |
| Ga0209863_101600062 | 3300026281 | Prmafrost Soil | VLAVAHVLGLLLASFAVTCLAPLACSLFMGDGLWRVFLLTAGAAG |
| Ga0209234_10864771 | 3300026295 | Grasslands Soil | VPAVAHVLGLLLATFALAYALPIGCSLLMGDGLWPKFLLAAALTAGCGLVL |
| Ga0209236_12153641 | 3300026298 | Grasslands Soil | VLAVAHVLGLLLATFALAYALPVGCSLIMADGLWGKFLLAAALTAGCGLQ |
| Ga0209688_10393352 | 3300026305 | Soil | VPAVAHVLGLLLATFALAYALPIGCSLLMGDGLWPKFLLA |
| Ga0209265_10009067 | 3300026308 | Soil | VLAVAHFLGLLLASFALSYALPIGCSLLLADHLWPKFLLAAAITAG |
| Ga0257167_10462671 | 3300026376 | Soil | VLAVAHFLGLLLATFALAYALPVGCSLVMADGLWPKFL |
| Ga0209161_105602561 | 3300026548 | Soil | VLAVAHVLGLLLGTFALAYALPVGCSLVMADGLWPKFLLAAALTA |
| Ga0209622_10111821 | 3300027502 | Forest Soil | VLAVAYALGLLLAAFALTFALPIACSLVMGDGLWPQFLLAAALLVLALAIA |
| Ga0209528_10842521 | 3300027610 | Forest Soil | VLAVAHFLGLLLATFALAYALPVGCSLAMADGLWPTFLLAAALTAGCGIVLAG |
| Ga0209009_10420722 | 3300027667 | Forest Soil | VLAVAHFLGLLLATFALAYALPIGCSLVMADGLWPKFLLSAALTAGCGIVLAGA |
| Ga0209060_104226481 | 3300027826 | Surface Soil | VLAVAHVLGLLLAFFGATYLVPIACSLLTGDGLTRYFLLAALVSSGT |
| Ga0209773_101123631 | 3300027829 | Bog Forest Soil | MLAVAHVLGLLLATFALAYALPVGCSLLLADGLAGRFLLAA |
| Ga0209167_108334511 | 3300027867 | Surface Soil | VLAVANVLGLLLASFSASCLLPLACSLWFGDGQWPCFVITAAIGAGC |
| Ga0209169_104543271 | 3300027879 | Soil | VFAVAHVLGLLLAAFAATCLAPLICSLLYGDGLALTFLLT |
| Ga0302231_100914962 | 3300028775 | Palsa | MLAVAHVLGLLLAAFAASCLAPLACSLLYRDGLALNFLLTA |
| Ga0307504_100004096 | 3300028792 | Soil | VLAVAHFLGLLLATFTLAYALPVGCSLVMADGLWPKFLLSAALTAGCGVVLAGAT |
| Ga0302308_101315123 | 3300031027 | Palsa | MLAVAHVLGLLLAAFAASCLAPLACSLLYRDGLALNFLL |
| Ga0073995_100355452 | 3300031047 | Soil | VLAVAHVLGLLLAFFGATYLLPIGCSIFTGDGLALFFAAGAACST |
| Ga0170834_1010296802 | 3300031057 | Forest Soil | MLGVAHVLGLLLAIFGVAYVLPVGCSIITGDGLWPQFL |
| Ga0318534_104942811 | 3300031544 | Soil | VLAVAHVLGLLLAGFALSYVLPIGCSLLFADHLWSHFLLAAACAAAV |
| Ga0318561_105815322 | 3300031679 | Soil | VLAVAHVLGLLLASFALSYALPVGCALLYGDGLATRFLLAAVIAAAS |
| Ga0310686_1014491341 | 3300031708 | Soil | MFGVAHVLGLLLAIFGVAYVLPVGCSIIVGDGLWPQF |
| Ga0307476_100141551 | 3300031715 | Hardwood Forest Soil | VVAVAHVLGLLLAFFGATYLLPIVCSILTSDGLALYFVVAAAS |
| Ga0307469_123461001 | 3300031720 | Hardwood Forest Soil | VLAVAHVLGLLLASFALTYALPIGCALLLRDGLTTRFLLAAAITAAV |
| Ga0307468_1006517882 | 3300031740 | Hardwood Forest Soil | VLAVAHFLGLLLATFALAYALPVGCSVVMADGLWPKFLLSAALTAGCGVVLAG |
| Ga0306918_101479181 | 3300031744 | Soil | VLAVAHVLGLLLASFALTYALPIGCALLLRDGLTTRFLL |
| Ga0318494_100613653 | 3300031751 | Soil | VLAVAHVLGWLLAGFALSYALPIGCSLLFADGLWSHFLL |
| Ga0318494_101604982 | 3300031751 | Soil | VLAVAHVLGLLLAGFALSYVLPIGCSLLFADGLWSHFLLAAAC |
| Ga0318494_107861061 | 3300031751 | Soil | VLAVAHVLGLLLASFALTYALPIGCALLLRDGLTTRFLLA |
| Ga0318494_108389261 | 3300031751 | Soil | VLAVAHVLGLLLASFALTYALPVGCALLYGDGLWTRFLLAAAITA |
| Ga0307477_101033171 | 3300031753 | Hardwood Forest Soil | VLAVAYVLGLLLAAFALSFALPIACSLLMEDGLWPKFLMAAALA |
| Ga0318554_100503033 | 3300031765 | Soil | VLAVAHVLGWLLAGFALSYALPIGCSLLFADGLWSHFL |
| Ga0318546_107552981 | 3300031771 | Soil | VLAVAHVLGLLLASFALTYALPIGCALLLRDGLTT |
| Ga0318543_105361761 | 3300031777 | Soil | VLAVAHVLGLVLAGFALTYALPFVCSLLFGDGLWSH |
| Ga0318498_100101601 | 3300031778 | Soil | VLAVAHVLGLVLAGSALSYALPIACSLLFADGLWPH |
| Ga0318547_101071641 | 3300031781 | Soil | VLAVAHVLGLLLASFALTYALPVGCALLYGDGLWTRFLLAAAITAA |
| Ga0318552_100012111 | 3300031782 | Soil | VLAVAHVLGLVLAGSALSYALPIACSLLFADGLWPHFLLAAACAAA |
| Ga0318548_100122603 | 3300031793 | Soil | VLAVAHVLGLVLAGSALSYALPIACSLLFADGLWPHFL |
| Ga0318568_100521881 | 3300031819 | Soil | VLAVAHVLGLLLASFALSYALPVGCALLYGDGLATRF |
| Ga0318517_104027662 | 3300031835 | Soil | VLAVAHVLGWLLASFALSYLLPIGCALLLSDGLWTRFLLAAAVTAA |
| Ga0306925_110194571 | 3300031890 | Soil | VLAVAHVLGLVLAGFALTYALPFVCSLLFGDGLWSHFLL |
| Ga0306923_107715231 | 3300031910 | Soil | VLAVAHVLGLLLAGFALSYALPIGCSLLFADGLWS |
| Ga0306922_109012432 | 3300032001 | Soil | VLAVAHVLGWLLASFALSYLLPIGCALLLSDGLWTRFLLAAAVTA |
| Ga0318545_101544191 | 3300032042 | Soil | VLAVAHVLGLVLAGSALSYALPIACSLLFADGLWPHFLLAAACAAAVG |
| Ga0318524_107005561 | 3300032067 | Soil | VLAVAHVLGLLLASFALTYALPVGCALLYGDGLWTRFLLAAAIT |
| Ga0318577_101982771 | 3300032091 | Soil | VLAVAHVLGLVLAGSALSYALPIACSLLFADGLWPHFLLAAACAAAVGMA |
| Ga0311301_108277022 | 3300032160 | Peatlands Soil | MLGVAHVLGLVLAIFGVAYVLPVGCSIIMGDGLWLQFIVAA |
| Ga0307471_1031365401 | 3300032180 | Hardwood Forest Soil | VLAVAHVLGLLLATFGLACLLPVGCSLLLADGLWPRFLLA |
| Ga0335078_108227611 | 3300032805 | Soil | VLAVAHVLGLLLAAFAFSCVPALLCSLLLADGLAPRFLLAAAVTAGIGVAL |
| Ga0335078_112313292 | 3300032805 | Soil | VLAVAYALGLLLAAFALTFALPIACSLVMGDGLWPKFLLAAALAALAGLALS |
| Ga0335070_113206581 | 3300032829 | Soil | VLAVAHVLGWLLASFALSYLLPIAGSLLAGDGLASRFLLAAAVSAAV |
| Ga0335076_104021221 | 3300032955 | Soil | LFAVAYALGLLLAAFALTFVLPIACSLLMGDGLALRFLLAAALAGGGGLVLAAATARLKRELRA |
| Ga0335076_105004241 | 3300032955 | Soil | VIAVARVLGLLLAFFGAAYLLPIVCSLLTGDGITIFFLVGA |
| Ga0335073_121544742 | 3300033134 | Soil | VFAVAYMLGLLLLAFALSFVLPIACSLLMGDGLALKFLLAAALTAG |
| Ga0318519_101367661 | 3300033290 | Soil | VLAVAHVLGLLLASFALTYALPIGCALLLRDGLTTRFL |
| Ga0318519_102105681 | 3300033290 | Soil | VLAVAHVLGLLLATFALAYLAPALCSLLLGDHLWVNFLIAGAIT |
| Ga0314867_090936_1_138 | 3300033808 | Peatland | VLAVAYALGLLLAAFALTFALPIACSLVMADGLWPKFLLAAALAAV |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |