Metagenome / Metatranscriptome Family F090659

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090659
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	80 residues
Representative Sequence	EEMDDLSQRAVKLVIEYCLEVLEEVEETIRGKASLARLEAALNAQYAEKYENKVFQYRWALRHPVVKEAITRAMGNRFPSR
Number of Associated Samples	52
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	10.19 %
% of genes near scaffold ends (potentially truncated)	82.41 %
% of genes from short scaffolds (< 2000 bps)	88.89 %
Associated GOLD sequencing projects	46
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.78

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (65.741 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.630 % of family members)
Environment Ontology (ENVO)	Unclassified (48.148 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (85.185 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.13% β-sheet: 0.00% Coil/Unstructured: 45.87%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.78
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.78
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.104.1.0: automated matches	d2hi4a_	2hi4	0.62023
a.104.1.1: Cytochrome P450	d3czha1	3czh	0.60954
f.22.1.1: ABC transporter involved in vitamin B12 uptake, BtuC	d2qi9a_	2qi9	0.60666
e.75.1.1: Flu NP-like	d4dyna_	4dyn	0.58798
a.104.1.0: automated matches	d6l8ia_	6l8i	0.58783

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF13560	HTH_31	2.78
PF06250	YhcG_C	2.78
PF00571	CBS	1.85
PF00141	peroxidase	0.93
PF01610	DDE_Tnp_ISL3	0.93
PF07040	DUF1326	0.93
PF01471	PG_binding_1	0.93
PF01051	Rep_3	0.93
PF13533	Biotin_lipoyl_2	0.93
PF02735	Ku	0.93
PF00920	ILVD_EDD	0.93
PF13304	AAA_21	0.93
PF14552	Tautomerase_2	0.93
PF00149	Metallophos	0.93
PF13561	adh_short_C2	0.93
PF00873	ACR_tran	0.93
PF04471	Mrr_cat	0.93
PF05685	Uma2	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG4804	Predicted nuclease of restriction endonuclease-like (RecB) superfamily, DUF1016 family	General function prediction only [R]	2.78
COG0129	Dihydroxyacid dehydratase/phosphogluconate dehydratase	Carbohydrate transport and metabolism [G]	1.85
COG0376	Catalase (peroxidase I)	Inorganic ion transport and metabolism [P]	0.93
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.93
COG3464	Transposase	Mobilome: prophages, transposons [X]	0.93
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	0.93
COG5527	Protein involved in initiation of plasmid replication	Mobilome: prophages, transposons [X]	0.93
COG5588	Uncharacterized conserved protein, DUF1326 domain	Function unknown [S]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.74 %
All Organisms	root	All Organisms	34.26 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.74 %
cellular organisms	root	All Organisms → cellular organisms	34.26 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.74 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	34.26 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.74 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	10.19 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.41 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.74 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	9.26 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.63 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	1.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.74 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	4.63 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.78 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	1.85 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.85 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	0.93 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.74 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	4.63 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.85 %
Cytophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia	1.85 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	1.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.85 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.93 %
Opitutales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales	0.93 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.74 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	2.78 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	1.85 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.85 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	1.85 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.85 %
Massilia group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group	0.93 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.93 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.74 %
Brevifollis	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Brevifollis	2.78 %
unclassified Verrucomicrobia subdivision 3	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3	1.85 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	1.85 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.85 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.85 %
Azospirillum thiophilum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum thiophilum	0.93 %
Opitutus	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus	0.93 %
Massilia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.74 %
Brevifollis gellanilyticus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Brevifollis → Brevifollis gellanilyticus	2.78 %
Verrucomicrobia subdivision 3 bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	1.85 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	1.85 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.85 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.85 %
Massilia rubra	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → Massilia rubra	0.93 %
unclassified Opitutus	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → unclassified Opitutus	0.93 %
Azospirillum thiophilum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum thiophilum	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.74 %
Brevifollis gellanilyticus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Brevifollis → Brevifollis gellanilyticus	2.78 %
Verrucomicrobia subdivision 3 bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	1.85 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	1.85 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.85 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.85 %
Opitutus sp. GAS368	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → unclassified Opitutus → Opitutus sp. GAS368	0.93 %
Massilia rubra	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → Massilia rubra	0.93 %
Azospirillum thiophilum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum thiophilum	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459006\|GBPF9FW01A43WF	Not Available	531	Open in IMG/M
2170459009\|GA8DASG01B0LLU	Not Available	509	Open in IMG/M
3300002245\|JGIcombinedJ26739_101159675	Not Available	661	Open in IMG/M
3300002914\|JGI25617J43924_10345953	Not Available	516	Open in IMG/M
3300003219\|JGI26341J46601_10151705	Not Available	647	Open in IMG/M
3300003368\|JGI26340J50214_10049223	Not Available	1173	Open in IMG/M
3300003368\|JGI26340J50214_10068544	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	946	Open in IMG/M
3300003368\|JGI26340J50214_10109581	Not Available	704	Open in IMG/M
3300003368\|JGI26340J50214_10149925	Not Available	584	Open in IMG/M
3300003368\|JGI26340J50214_10181217	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300003505\|JGIcombinedJ51221_10323819	Not Available	627	Open in IMG/M
3300004152\|Ga0062386_100041743	Not Available	3439	Open in IMG/M
3300004152\|Ga0062386_100102295	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Brevifollis → Brevifollis gellanilyticus	2202	Open in IMG/M
3300004152\|Ga0062386_100206184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → Massilia rubra	1548	Open in IMG/M
3300004152\|Ga0062386_100669186	Not Available	851	Open in IMG/M
3300004152\|Ga0062386_101252350	Not Available	617	Open in IMG/M
3300004152\|Ga0062386_101369345	Not Available	589	Open in IMG/M
3300004635\|Ga0062388_102164548	Not Available	578	Open in IMG/M
3300005610\|Ga0070763_10605548	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	635	Open in IMG/M
3300006176\|Ga0070765_100369049	All Organisms → cellular organisms → Bacteria	1336	Open in IMG/M
3300006176\|Ga0070765_101137109	Not Available	738	Open in IMG/M
3300006893\|Ga0073928_10046500	All Organisms → cellular organisms → Bacteria → Proteobacteria	3956	Open in IMG/M
3300006893\|Ga0073928_10090681	Not Available	2591	Open in IMG/M
3300006893\|Ga0073928_10195927	Not Available	1586	Open in IMG/M
3300006893\|Ga0073928_10228919	Not Available	1435	Open in IMG/M
3300006893\|Ga0073928_10450555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	931	Open in IMG/M
3300006893\|Ga0073928_10622558	Not Available	760	Open in IMG/M
3300006893\|Ga0073928_10799593	Not Available	652	Open in IMG/M
3300009520\|Ga0116214_1366275	Not Available	559	Open in IMG/M
3300010048\|Ga0126373_13078215	Not Available	520	Open in IMG/M
3300010339\|Ga0074046_10424346	Not Available	801	Open in IMG/M
3300010339\|Ga0074046_10783724	Not Available	558	Open in IMG/M
3300010341\|Ga0074045_10230008	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	1232	Open in IMG/M
3300010341\|Ga0074045_10688809	Not Available	649	Open in IMG/M
3300010343\|Ga0074044_10504135	Not Available	791	Open in IMG/M
3300010379\|Ga0136449_100692713	All Organisms → cellular organisms → Bacteria	1711	Open in IMG/M
3300010379\|Ga0136449_100702096	All Organisms → cellular organisms → Bacteria → Acidobacteria	1696	Open in IMG/M
3300010379\|Ga0136449_102803730	Not Available	688	Open in IMG/M
3300010379\|Ga0136449_103956294	Not Available	554	Open in IMG/M
3300010379\|Ga0136449_104551324	Not Available	509	Open in IMG/M
3300010876\|Ga0126361_10790599	Not Available	561	Open in IMG/M
3300012202\|Ga0137363_11798599	Not Available	505	Open in IMG/M
3300012205\|Ga0137362_10994920	Not Available	714	Open in IMG/M
3300020579\|Ga0210407_10058224	All Organisms → cellular organisms → Bacteria	2891	Open in IMG/M
3300020579\|Ga0210407_10138171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum thiophilum	1873	Open in IMG/M
3300020579\|Ga0210407_10937635	Not Available	662	Open in IMG/M
3300020580\|Ga0210403_10238308	Not Available	1493	Open in IMG/M
3300020580\|Ga0210403_10579155	Not Available	908	Open in IMG/M
3300020580\|Ga0210403_10699327	Not Available	812	Open in IMG/M
3300020581\|Ga0210399_10019757	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → unclassified Opitutus → Opitutus sp. GAS368	5332	Open in IMG/M
3300020581\|Ga0210399_10936220	Not Available	701	Open in IMG/M
3300020583\|Ga0210401_11277114	Not Available	592	Open in IMG/M
3300020583\|Ga0210401_11619698	Not Available	505	Open in IMG/M
3300021046\|Ga0215015_10939809	Not Available	1381	Open in IMG/M
3300021088\|Ga0210404_10102911	Not Available	1443	Open in IMG/M
3300021088\|Ga0210404_10404076	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300021088\|Ga0210404_10790785	Not Available	542	Open in IMG/M
3300021168\|Ga0210406_11059390	Not Available	600	Open in IMG/M
3300021168\|Ga0210406_11063937	Not Available	598	Open in IMG/M
3300021170\|Ga0210400_10437438	Not Available	1079	Open in IMG/M
3300021171\|Ga0210405_10013545	All Organisms → cellular organisms → Bacteria	6781	Open in IMG/M
3300021171\|Ga0210405_10197150	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1596	Open in IMG/M
3300021171\|Ga0210405_11015611	Not Available	624	Open in IMG/M
3300021178\|Ga0210408_10018563	All Organisms → cellular organisms → Bacteria	5577	Open in IMG/M
3300021178\|Ga0210408_10943444	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	670	Open in IMG/M
3300021178\|Ga0210408_11175154	Not Available	587	Open in IMG/M
3300021178\|Ga0210408_11220958	Not Available	573	Open in IMG/M
3300021377\|Ga0213874_10192127	Not Available	731	Open in IMG/M
3300021405\|Ga0210387_10324210	All Organisms → cellular organisms → Bacteria	1358	Open in IMG/M
3300021405\|Ga0210387_11115088	Not Available	688	Open in IMG/M
3300021406\|Ga0210386_10924911	Not Available	746	Open in IMG/M
3300021432\|Ga0210384_10915535	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	777	Open in IMG/M
3300021478\|Ga0210402_10407037	Not Available	1263	Open in IMG/M
3300021478\|Ga0210402_10578797	Not Available	1041	Open in IMG/M
3300021479\|Ga0210410_10239387	All Organisms → cellular organisms → Bacteria	1627	Open in IMG/M
3300021559\|Ga0210409_10079640	Not Available	3037	Open in IMG/M
3300021559\|Ga0210409_10530456	Not Available	1042	Open in IMG/M
3300022557\|Ga0212123_10015719	All Organisms → cellular organisms → Bacteria	9367	Open in IMG/M
3300022557\|Ga0212123_10376346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	961	Open in IMG/M
3300022557\|Ga0212123_10639957	Not Available	664	Open in IMG/M
3300026551\|Ga0209648_10796152	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300027645\|Ga0209117_1086862	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300027698\|Ga0209446_1189941	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300027812\|Ga0209656_10016111	All Organisms → cellular organisms → Bacteria → Proteobacteria	4636	Open in IMG/M
3300027812\|Ga0209656_10042818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2608	Open in IMG/M
3300027812\|Ga0209656_10083712	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	1710	Open in IMG/M
3300027812\|Ga0209656_10115564	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Brevifollis → Brevifollis gellanilyticus	1389	Open in IMG/M
3300027812\|Ga0209656_10185255	Not Available	1018	Open in IMG/M
3300027812\|Ga0209656_10210220	Not Available	938	Open in IMG/M
3300027812\|Ga0209656_10410090	Not Available	606	Open in IMG/M
3300027812\|Ga0209656_10519675	Not Available	518	Open in IMG/M
3300027812\|Ga0209656_10528257	Not Available	513	Open in IMG/M
3300027824\|Ga0209040_10075556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1962	Open in IMG/M
3300027824\|Ga0209040_10105595	Not Available	1587	Open in IMG/M
3300027824\|Ga0209040_10129666	Not Available	1387	Open in IMG/M
3300027824\|Ga0209040_10327126	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Brevifollis → Brevifollis gellanilyticus	736	Open in IMG/M
3300027824\|Ga0209040_10514356	Not Available	528	Open in IMG/M
3300028047\|Ga0209526_10433871	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
3300028746\|Ga0302233_10252178	Not Available	669	Open in IMG/M
3300028759\|Ga0302224_10263469	Not Available	689	Open in IMG/M
3300028776\|Ga0302303_10308166	Not Available	533	Open in IMG/M
3300028906\|Ga0308309_10927716	Not Available	755	Open in IMG/M
3300028906\|Ga0308309_11257597	Not Available	637	Open in IMG/M
3300031754\|Ga0307475_10607253	Not Available	876	Open in IMG/M
3300031754\|Ga0307475_11469404	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	524	Open in IMG/M
3300031962\|Ga0307479_11212995	Not Available	718	Open in IMG/M
3300032160\|Ga0311301_10467710	All Organisms → cellular organisms → Bacteria → PVC group	1889	Open in IMG/M
3300032160\|Ga0311301_12150045	All Organisms → cellular organisms → Bacteria → Acidobacteria	643	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.07%
Host-Associated	Host-Associated	0.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.89%
Aquatic	Environmental → Aquatic	35.19%
Plants	Host-Associated → Plants	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.11%
Freshwater	Environmental → Aquatic → Freshwater	25.93%
Thermal Springs	Environmental → Aquatic → Thermal Springs	9.26%
Peat	Environmental → Terrestrial → Peat	2.78%
Roots	Host-Associated → Plants → Roots	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.15%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	25.93%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	9.26%
Loam	Environmental → Terrestrial → Soil → Loam	8.33%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.63%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.78%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	32.41%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	25.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.04%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	9.26%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.33%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.63%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.70%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.78%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.63%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	25.93%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	9.26%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	7.41%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	4.63%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.63%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.70%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.78%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.78%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.85%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.93%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.93%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459006	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 0-10cm	Environmental	Open in IMG/M
2170459009	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028746	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028776	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_1	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
L01_03706640	2170459006	Grass Soil	MDDLSQDATKLVINYCLEILEGVEETIQGKATLARLETTLDDQYAEKCENKVYQYRWALRHPVVKETITKALTNRFPSR
F47_07005720	2170459009	Grass Soil	KLVIEYCLGILEEVERNIRRKASLSRLEAALNAQYAEQYENQVYQYRWALRHPVVKEAITRALRNRFPSR
JGIcombinedJ26739_1011596752	3300002245	Forest Soil	MDDLSVKATKIVIEYCLEILEEAEAKIHGKPSLARLEAALNQQYAEQYENRAYQYQWAMRHPVVKEAITRALDNRFPRRS*
JGI25617J43924_103459531	3300002914	Grasslands Soil	SQKAVKLVIEYCLGILDESAKKIRGKVSLARLEDALNAQYDEQYDNKVYQYHWALRHPVVKHAITKALSNRFPGR*
JGI26341J46601_101517051	3300003219	Bog Forest Soil	KEPWLGGLRKLSWQTFFRVCTQEMDDLSQKAIKLVIEYCLEVLEEVEETIRGKASLARLEAALDAQYAEKYENKVFQYRWALRHPVVKEAITRATGNRFPSR*
JGI26340J50214_100492232	3300003368	Bog Forest Soil	FRVCTQEMDDLSEKAVKHVIEYCLEILEEVEAKIPRKTSLARLEAALDLRYAEQYENKAFQYRWALRHPVVNEAITRALDNRFPERG*
JGI26340J50214_100685441	3300003368	Bog Forest Soil	MDDLSEKAVKHVIEYCLEILEEVEAKIPRKTSLARLEAALDLQYAEQYENKVFQYQWAMRHPVVNEAVTRGLPNRFPHRTVK*
JGI26340J50214_101095811	3300003368	Bog Forest Soil	ACTQEIDDLSQRPIKLVIEYCLEVLEEVEETMRGRASLARLEAALNVQYAEQFENKVFQYRWALSHPVVKEAITRAMGNRFPSR*
JGI26340J50214_101499251	3300003368	Bog Forest Soil	EPWLNGLHKLNWQTFFRVCTQEMDDISERALRLVIDYCLEILDEVEAKLPSKSSRARLEAALDLQYAEQYENKVFQYRWALRHPVINEAITRALNNRFPSR*
JGI26340J50214_101812171	3300003368	Bog Forest Soil	YCLEILDEVEGKIQGKASLPRLEAALDVQYAEKYENKVFQYRWALRHPVVKEAIPRAMGNRYPSR*
JGIcombinedJ51221_103238191	3300003505	Forest Soil	MISQKAVKLVIEYCLEVLEEVEKTIRGKASLARLEAALDLQYAEKYENKVSQYRWALRHPVVNEAITRAMGNRFPSR*
Ga0062386_1000417434	3300004152	Bog Forest Soil	LSWQTFFRVCTEEMDDLSQEATKLVINYCLEILEDVEEKIRGKASLARFEATLNTQYAEQCENNVYQYRWALRHPVVREAITRTLGNGFPSR*
Ga0062386_1001022954	3300004152	Bog Forest Soil	EVEKTIRGKASLARLEAALNVQYAEKYENKAYQYRWALRHPVVKAAITKALANRFPAR*
Ga0062386_1002061841	3300004152	Bog Forest Soil	RVCTQEMDDLSQKAIKLVIEYCLEILEEVEEKIRGKASLARLEAALDVQYAEQYENKCFQYKWAMRHPVVNEAITRAMGNRFSSR*
Ga0062386_1006691861	3300004152	Bog Forest Soil	TQEMDDLSQRAVKLVIEYCLEVLEEVEKIIRGKATRARLEAALDLQYAEQFENKVCQYYWALRHPVVKAAITKALANRFRAR*
Ga0062386_1012523502	3300004152	Bog Forest Soil	LEVLEEVEKTIRGKAALARLEAALDVQYTEKYESRVFQYRWALRHPVVNDAITRAMGNRFPSC*
Ga0062386_1013693451	3300004152	Bog Forest Soil	TEEMDDLSQEATKLVINYCLEILEDVEEKVRGKTSLARLEATLSAQYAEQCENKVYQYRWALRHPVVKEAITKALGNRFPFR*
Ga0062388_1021645481	3300004635	Bog Forest Soil	RALKLVIEYCLEVLQEVEEKIPGKASLARFEAALNVRYADRNENKVYQYRWALRHPVVNESITRAMGNRSPSR*
Ga0070763_106055482	3300005610	Soil	LEILEEAESKIHGKPSLARLEAALNQQYAEQYENKAYQYQWAMRHPVVKEAITRALD
Ga0070765_1003690494	3300006176	Soil	LSWQTFFQVCTEEMDDLSQRAIKLVIEYCLEILEEAESKIQGKPSLARLETALYRDYAEAYENTAYQYQWALRHPIVKEAVNRALKNRFPAR*
Ga0070765_1011371091	3300006176	Soil	EYCLEVLEEVEKIIRGKATLARIEAALDLQYAELFENKVFQYRWALRHPVVEEAITRALGNRFPPR*
Ga0073928_100465002	3300006893	Iron-Sulfur Acid Spring	MDDLSQRATKFVTEYCLEILEEVESKIPDKGSLARLQAALNHQYAEQYENKVFQYQWAMRHPLVNEAVTRGLRNRFPSR*
Ga0073928_100906814	3300006893	Iron-Sulfur Acid Spring	MDDLSQKAIKLVIDYCLGILDESAKKIRGKVSLARLEDALNAQYDEQYDNKLYQYRWALRHPVVKDAITKALANRFPAR*
Ga0073928_101959272	3300006893	Iron-Sulfur Acid Spring	CLEILDEVEAKLPSKSSRARLEAALDLQYAEQYENKVFQYRWALRHPAINEAITRALNNRFPSR*
Ga0073928_102289192	3300006893	Iron-Sulfur Acid Spring	EEVEETIRGKASLARIEAALDLQYAEKYENKVFQYRWALRHRVVKEAITRAMGNRFPSR*
Ga0073928_104505552	3300006893	Iron-Sulfur Acid Spring	VIEYCLEVLEEVEKIIRGKATRARLEAALEVQYAEQYENKVFQYRWALRHPVVKDAITKALVNRFPAR*
Ga0073928_106225581	3300006893	Iron-Sulfur Acid Spring	KLVIEYCLVVLNEVEGTISGKATLARLQNALKLQYAKQYENKVFQYQWAMRHPIVKEAITRALSNRFPRRS*
Ga0073928_107995931	3300006893	Iron-Sulfur Acid Spring	VIEYCLEVLEEVEKIIRGRATLARLEAALDLQYTDQFENKVFQYRWALRHPVVKEAITRAMGNPIPRSLKGL
Ga0116214_13662752	3300009520	Peatlands Soil	GVNKLTWQTFFRVCTQEMDDLSEKAVKHVIEYCLEILEEVEAKIPRKTSLARLEAALDLQYAEQYENKVFQYRWALRHPVVNEAVTRGLRNRFPHRTVK*
Ga0126373_130782151	3300010048	Tropical Forest Soil	RLVIEYCLEILDEVEEKIQGKVSLANLEAALDLEYAEQYENKVFQYRWALRHAVVKEAVTRALANRFLSQ*
Ga0074046_104243462	3300010339	Bog Forest Soil	INKLSWDTFFRVCTQEMDDLSQKAIKLVIEYCLEVLEEVEAEIPGKASLARLEAALNDQYAELYENKVYQYRWALRDPVVKEAITKALANRFPSR*
Ga0074046_107837242	3300010339	Bog Forest Soil	YCLEILEEVEAKIPRKISLVRFEAALDLQYAEQYENKVFQYRWALRHPVVNEAVTRGLRNRFPHRS*
Ga0074045_102300084	3300010341	Bog Forest Soil	VTEYCLEILEEVESKIPGKASLARLQAALKHQYAEQYENKVFQYQWAMRHPVVNEAVTKALGNRFPHRS*
Ga0074045_106888091	3300010341	Bog Forest Soil	EVLEEVEETIRGKASLARLEAALGVQYAEKYENKVFQFRWALRHPVVKEAITRAMGNRFPSR*
Ga0074044_105041351	3300010343	Bog Forest Soil	VEFFAGKEPWLVGLHKLSWQTFFRVCTQEMDDLSQKAIKLVIEYCLEVLEEVEEKIRGKASLARLETALDVQYDQQFENKVYQYRWALRHPVVKEAITRAMGNRFPSR*
Ga0136449_1006927132	3300010379	Peatlands Soil	KLVIEYCLEVLEEVEEKIRGKASLARLEAALDVQYAEKYENKVYQYRWALRHSVVKEAITRAMRNRFPSR*
Ga0136449_1007020963	3300010379	Peatlands Soil	GKEPWLGSIHNLNWQTFFRVCTQEMDDFSQKALKLVIEYCLEVLEEVERTIRGKASLSRLEAALNVQYAEQYENRVFQYRWALRHPVVKDAVTKALANRFAAR*
Ga0136449_1028037301	3300010379	Peatlands Soil	VEFFAGKEPWLVGLHKLSWQTFFRVCTQEMDDLSQKAIKLVIEYCLEVLAEVEETIRGKASLARLEAALDLQYAEKYENKVFQYRWALRHPVVNEAITRAMGNRFPSR*
Ga0136449_1039562941	3300010379	Peatlands Soil	CTQEMDDISERALRLVIQYCLEILDKVEAKIPGKTSLARLEAALDFQYAAQYENQVFQYRWALRHPVVREAITRALTNRFPAR*
Ga0136449_1045513241	3300010379	Peatlands Soil	SWLFELKAIDWTTFCRVCMENMDDLSVEATKLVIEYCLEILEQVEARIPDKPSVARLETDLDLEYVEQYENKVFHYRWALRNPVIKEAITRALANHLDPT*
Ga0126361_107905991	3300010876	Boreal Forest Soil	MDDLSQRAIKLVIEYCLEVLEEAEAKIQGKPTLTRLEKALFLDYAEAYENPGYQYQWALRHPLVKEAVNRALKNRFPAR*
Ga0137363_117985991	3300012202	Vadose Zone Soil	QTFFRVCTEEMDDLSQKATKLVIDYCLEVLEEVEETIRGKASLARLEAALNVQSAEQTENKVYQYRWALRHPVVKEAITRAMGNRFPHRS*
Ga0137362_109949201	3300012205	Vadose Zone Soil	MRIIALYQIFCHGQNVEMDDLSQKAIKLVIEYCLEVLEEVEETIRGKASLARLEAALNVQYAEQYENKVFQYRRALRHPVVNEAITRAMGNRFPSR*
Ga0210407_100582241	3300020579	Soil	KEPWLVGLRKLSRQTFFRVCTEEMDDLSQRAVKLVIEYCLEVLEEVEETIRGKASLARLEAALNVQYAEQNENKVYQYRWALRHPVVNEAITRAMGNRFPSR
Ga0210407_101381714	3300020579	Soil	MKGVNKLTWQTFFRVCTQEMDDLSQRAIRLVIEYCLEVLEEVEKTIRGKASLARLEAALDVQYAEKYENKVYQYRWALRHSVVKEAITRAMRNRFPSR
Ga0210407_109376351	3300020579	Soil	MDDISERALRLVVDYCLEIIEEFEAKIPSKSSRARLEAALDLQWAEQYENKVFQYRWALRHPVINEAV
Ga0210403_102383082	3300020580	Soil	MAPGKLCELERGEMEYCLEVLEEVEKTIRGKASVARLEAALNVQYAEKYENKVFQYRWALRHPVIKEAITRAIGNRFPSR
Ga0210403_105791552	3300020580	Soil	VTFFTGKEPWMKGVNKLTWQTFFRVCTQEMDDLSQRATKVVTEYCLEILEEVESKIPGKASLARLQAALNHQYAGQYENKVFQYQWAMRHPVVNEAVTRGLRNRFPHRTVK
Ga0210403_106993271	3300020580	Soil	LEEVEKTIRGKASLARLEAALDLQYAEKYENKVSQYRWALRHPVVNEAITRAMGNRFPSR
Ga0210399_100197572	3300020581	Soil	MISQKAVKLVIEYCLEVLEEVEKTIRGKASLARLEAALDLQYAEKYENKVSQYRWALRHPVVNEAITRAMGNRFPSR
Ga0210399_109362202	3300020581	Soil	MDDLSVKATKIVIEYCLEILEEAEAKIHGKPSLARLEAALNQQYAEQYENKAYQYQWAMRHPVVKEAITRALDNRLPRRS
Ga0210401_112771141	3300020583	Soil	FFRICTEEMDDLSLRAIKLVIEYCLEILEEAEAKIEGKSSLARLETALNLDYAEQFENRGYQYHWALRHPLVREAVKRALNNRFPAR
Ga0210401_116196981	3300020583	Soil	NWQTFFRVCTQEMDDISQRAVRLVIQYCLEILDEVEAKIPGRISLARLEAALDLQYAEQYENKVFQYRWALRHPVVKEAITRALTNRFRSR
Ga0215015_109398092	3300021046	Soil	MDDLSQRATKLVIEYCLGILDESAKKIRGKVSLARLEDALTAQYDERCDNKVYQYYWALRHPVVKDAISKALVNRFPAR
Ga0210404_101029111	3300021088	Soil	RLVIEYCLEILDEVEAKLPSKSSRARLEAALDLQYAEQYENKVFQYRWALRHPAINEAITRALNNRFPSR
Ga0210404_104040761	3300021088	Soil	VIEYCLEVLEEVEKTILGKASLARLEAALNAQYAEKYENKVFQYRWALRHPVVKEAITRAMGSRFPSR
Ga0210404_107907851	3300021088	Soil	MISQKAVKLVIEYCLEVLEEVEKTIRGKASLARLEAALDLQYAEKYENKVSQYRWALRHPVVNEAITRAMVTASPRARRVGVTQARR
Ga0210406_110593901	3300021168	Soil	TQEMDDLSQKALKLVIEYCLEVLEEVEETIRGKASLARLEAALDVQYAEKYENKVYQYRWALRHSVVKEAITRAMRNRFPSR
Ga0210406_110639371	3300021168	Soil	EKTIRGKASLARLEAALDLQYAEKYENKVSQYRWALRHPVVNEAITRAMGNRFPSR
Ga0210400_104374383	3300021170	Soil	FRVCTEEMDDLSQRAMKLVIEYCLEILEETEAKIQGKPSLARLEAALNLHYAEEYENKAYQYQWALRHPIIREAVTRALNNRFPSR
Ga0210405_100135453	3300021171	Soil	VIEYCLEVLEEVEKTIRGKASLARLEAALDLQYAEKYENKVSQYRWALRHPVVNEAITRAMGNRFPSR
Ga0210405_101971502	3300021171	Soil	IEYCLEILEEAEAKIHGKPSLARLEAALNQQYAEQYENRAYQYQWAMRHPVVKEAITRALDNRLPRRS
Ga0210405_110156112	3300021171	Soil	ATKVVTEYCLEILEEVESKIPGKASLARLQAALNHQYAGQYENKVFQYQWAMRHPVVNEAVTRGLRNRFPHRTVK
Ga0210408_100185635	3300021178	Soil	VRQMAPGKLCELERGEMEYCLEVLEEVEKTIRGKASVARLEAALNVQYAEKYENKVFQYRWALRHPVIKEAITRAIGNRFPSR
Ga0210408_109434441	3300021178	Soil	KGISKLNWQTFFRVCTQEMDDLSQRAVKLVIEYCREVVGEVEKIIRGKATLARLEAALDLQYAEQFENKVFQYRWALRHPVVKEAITRAMGNRFRSR
Ga0210408_111751542	3300021178	Soil	VCTQEMDDLSQKAVKLVIEYCLEVLEEVEKIILGKATLARLEAALDLQYAQQFENKVFQYRWALRHPVVEEAITRALANRFPSR
Ga0210408_112209582	3300021178	Soil	GKEPWLKGVNRITWQNFFRVCTEEMDDLSKRATKLVIEYCLEKVEAVAEEISGKVTQPRLEDALSAAYAEIYENPVYQYRWALRHSVVKEAVTLALVNRFPER
Ga0213874_101921272	3300021377	Plant Roots	IQYCLEVVEEAEEKIRGKATLARIEAALNVQYAEQYENKVYQYRWALRHPVVKEAITRAMRNRFSSR
Ga0210387_103242101	3300021405	Soil	TFFRVCTDEMDDLSQRAIKLVVEYCLEIIEEAEGRIQGRPSLAHLETALNLHYAEQYENAAYQFHWAMRHPIVREAVNRALNNRFPAR
Ga0210387_111150881	3300021405	Soil	MKGVNKLTWQTFFRVCTQEMDDLSQRAIRLVIEYCLEVLEEVEKTIRGKASLARLEAALDLQYAEKYENKVSQYRWALRHPVVNEAITRAMGNRFPSR
Ga0210386_109249112	3300021406	Soil	EYCLEILDEVEAKLPSKSSRARLEAALDLQYAEQYENKVFQYRWALRHPAINEAITRALNNRFPSR
Ga0210384_109155351	3300021432	Soil	QEMDNLSQKAVKLVIEYCLEVLEEVEKIIRGKATLTRLEAALDLQYAEQFENKVFQYRWALRHPVVKEAITRAMGNRFRSR
Ga0210402_104070371	3300021478	Soil	CTQEMDDLSQKAIKLVIEYCLEVLEEVEEKIRGKASLARLEAALDVQYAEKYENKVYQYRWALRHSVVKEAITRAMRNRFPSR
Ga0210402_105787971	3300021478	Soil	FFTGKEPWLNGLHKLNWQTFFRVCTQEMDDISERALRLVIEYCLEILDEVEAKLPSKSSRARLEAALDLQYAEQYENKVFQYRWALRHPAINEAITRALNNRFPSR
Ga0210410_102393873	3300021479	Soil	RVCTEEMDDLSVKATKIVIEYCLEILEEAEAKIQGKPSLARLEAALNQQYAEQYENKAYQYQWAMRHPVVKEAITRALDNRFPRRS
Ga0210409_100796401	3300021559	Soil	GKEPWLNGLHKLNWQTFFRVCTQEMDDISERALRLVIEYCLEILDEVEAKLPSKSSRARLEAALDLQYAEQYENKVFQYRWALRHPAINEAITRALNNRFPSR
Ga0210409_105304561	3300021559	Soil	AGVEFFAGKEPWLVGLHKLSWQTFFRVCTWVCTQEMDDLSQKAIKLVIEYCLEVLEEVEEKIRGKASLARLEAALDVQYAEKYENKVYQYRWALRHSVVKEAITRAMRNRFPSR
Ga0212123_100157198	3300022557	Iron-Sulfur Acid Spring	MDDLSQRATKFVTEYCLEILEEVESKIPDKGSLARLQAALNHQYAEQYENKVFQYQWAMRHPLVNEAVTRGLRNRFPSR
Ga0212123_103763462	3300022557	Iron-Sulfur Acid Spring	EEVEETIRGKASLARIEAALDLQYAEKYENKVFQYRWALRHRVVKEAITRAMGNRFPSR
Ga0212123_106399572	3300022557	Iron-Sulfur Acid Spring	VIEYCLEVLEEVEKIIRGRATLARLEAALDLQYTDQFENKVFQYRWALRHPVVKEAITRAMGNPIPRSLKGLAQRVWWAATQ
Ga0209648_107961523	3300026551	Grasslands Soil	EEMDDLSQKATKLVIEYCLEVLEEVEETIRGKASLARLEAALNVQSAEQNENKVYQYRWALRHPVVKEAITRAMGNRFPSR
Ga0209117_10868622	3300027645	Forest Soil	MDDLSLEATKLVIEYCLEILDEVEGIISGKATLARLQTALKLQYAEQCENKVFQYQWAMRHPIVKEAITRALSNRFPHRS
Ga0209446_11899411	3300027698	Bog Forest Soil	RGNKARDKLLLEILEEVEEKNRGKASLARLEATLNAQYAEQCENKVYQYRWPLRHSVVKEAITKALDNSFPSR
Ga0209656_100161118	3300027812	Bog Forest Soil	RVGTEEMDDLSQEATKLVINYCLEILEEVEEKIRGKASLARLEVTLNAQYAEQCENKVYQYRWPLRHSVVKEAITKALDNSFPSR
Ga0209656_100428181	3300027812	Bog Forest Soil	SWQTFFRVCTQEMDDLSQKALKLVIEYCLEVLEEVEETIRGKASLARLEAALNVQYAERYENKVFQYYWALRHPVVKDAITKALANRFPAR
Ga0209656_100837122	3300027812	Bog Forest Soil	EVEAKIPRKTSLARLEAALDLQYAEQYENKVFQYQWAMRHPVVNEAVTRGLPNRFPHRTV
Ga0209656_101155643	3300027812	Bog Forest Soil	IKLVIEYCLEVLEEVEKTIRGKASLARLEAALNVQYAEKYENKAYQYRWALRHPVVKAAITKALANRFPAR
Ga0209656_101852553	3300027812	Bog Forest Soil	FRVCTQEMDDLSRQAVKLVIEYCLEILEEVEGKLKGKASLARIEAALDAQYAGKYENRVFQYRWALRHPVVREAIKRALGNRFPPR
Ga0209656_102102201	3300027812	Bog Forest Soil	CLEVLEEVEETIRGKASLARLEAALNVQYAEQFENKVFQYYWALRHPVVKDAITKALAKRFPARARSRLLQDQPVF
Ga0209656_104100901	3300027812	Bog Forest Soil	LEVLEEVEKTIRGKAALARLEAALDVQYTEKYESRVFQYRWALRHPVVNDAITRAMGNRFPSC
Ga0209656_105196752	3300027812	Bog Forest Soil	EMDDLPQKAIKLVIEYCLEVLEEVEVTIRGKTSLARLEAALNVQYAEKFENKVFQYRWALRHPVVKEAITRATGNRYPSR
Ga0209656_105282572	3300027812	Bog Forest Soil	VIEYCLEVLEEVEAKSSGKASLARLEAALNDQYAELYENKVYQYRWALRHPVVKEAITKALANRFPSR
Ga0209040_100755561	3300027824	Bog Forest Soil	TWVCTQEMDDLSQKALKLVIEYCLEVLEEVEETIRGKASLARLEAALNVQYAERYENKVFQYYWALRHPVVKDAITKALANRFPAR
Ga0209040_101055953	3300027824	Bog Forest Soil	EMDDLSEKAVKHVIEYCLEILEEVEAKIPRKTSLARLEAALDLRYAEQYENKAFQYRWALRHPVVNEAITRALDNRFPERG
Ga0209040_101296663	3300027824	Bog Forest Soil	EVEETIRGKASLARLEAALNVQYAEQFENKVFQYYWALRHPVVKDAITKALAKRFPARARSRLLQDQPVF
Ga0209040_103271262	3300027824	Bog Forest Soil	EVLEEVEKTIRGKASLARLEAALNVQYAEKYENKAYQYRWALRHPVVKAAITKALANRFPAR
Ga0209040_105143561	3300027824	Bog Forest Soil	KLSWQTFFRVCTQEMDDLSQKAIKLVIEYCLEVLEEVEETIRGKASLARLEAALDAQYAEKYENKVFQYRWALRHPVVKEAITRATGNRFPSR
Ga0209526_104338712	3300028047	Forest Soil	DLSKKAIKLVIQYCLEVLEEAEEKIQGKASLARLEAALNVQYAEQYENRVYQYRWALRHPVVKEALTRAMRNRFPSR
Ga0302233_102521781	3300028746	Palsa	SLSKGNKLVIEYCLEVLEEVEEKIRGKASLARLEAALDVQCAEKYENKVYRCVLRHPVVKEAVTKAMRNRRPSR
Ga0302224_102634691	3300028759	Palsa	GNKLVIEYCLEVLEEVEEKIRGKASLARLEAALDVQCAEKYENKVYRCVLRHPVVKEAVTKAMRNRRPSR
Ga0302303_103081661	3300028776	Palsa	VIEYCLEVLEEVEEKIRGKASLARLEAALDVQCAEKYENKVYRCVLRHPVVKEAVTKAMRNRRPSR
Ga0308309_109277163	3300028906	Soil	KLVIEHCLEVLEEVEGKIPGKATLARLEAALDVQYAEQYENKVFQYRWALRHPVVKDAITKALANRFPAR
Ga0308309_112575971	3300028906	Soil	TFFRVCTEEMDDLSQKASKLVIEYCLGILDESAKKIRGKVSLAKLEDALNAQYDEQYDNKVYQYRWALRHPVVKDAITKALANRFPTR
Ga0307475_106072532	3300031754	Hardwood Forest Soil	MDDLSVKATKIVIEYCLEILEEAEATIQGKPSLAHLEAALNQQYAEQYENEAYQYQWAMHHPVVKEAITRALDNRFPRRS
Ga0307475_114694042	3300031754	Hardwood Forest Soil	EEMDDLSQRAVKLVIEYCLEVLEEVEETIRGKASLARLEAALNAQYAEKYENKVFQYRWALRHPVVKEAITRAMGNRFPSR
Ga0307479_112129951	3300031962	Hardwood Forest Soil	CTEEMDDLSQRAMKLVIEYCLEILEQTEAKIQGKPSLARLEAALNLHYAEEYENKAYQYQWALRHPIIREAVTRALNNRFPSR
Ga0311301_104677103	3300032160	Peatlands Soil	WQTFFRVCTQEMDDLSQKAIKLVIEYCLEVLEEVEEKIRGKASLARLEAALDVQYAEKYENKVYQYRWALRHSVVKEAITRAMRNRFPSR
Ga0311301_121500452	3300032160	Peatlands Soil	PWLGSIHNLNWQTFFRVCTQEMDDFSQKALKLVIEYCLEVLEEVERTIRGKASLSRLEAALNVQYAEQYENRVFQYRWALRHPVVKDAVTKALANRFAAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090659

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences