Metagenome / Metatranscriptome Family F090658

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090658
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	58 residues
Representative Sequence	MTTFFLSTLLLLTIVAAFAFGVAAGYWVICGFLNLFNPRRTGNKPASAPVLAPSSGD
Number of Associated Samples	94
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	56.48 %
% of genes near scaffold ends (potentially truncated)	12.96 %
% of genes from short scaffolds (< 2000 bps)	74.07 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (62.037 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (13.889 % of family members)
Environment Ontology (ENVO)	Unclassified (36.111 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.074 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.18% β-sheet: 0.00% Coil/Unstructured: 58.82%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF02567	PhzC-PhzF	15.74
PF13442	Cytochrome_CBB3	14.81
PF13247	Fer4_11	5.56
PF00005	ABC_tran	2.78
PF01808	AICARFT_IMPCHas	1.85
PF00460	Flg_bb_rod	0.93
PF05649	Peptidase_M13_N	0.93
PF12838	Fer4_7	0.93
PF02518	HATPase_c	0.93
PF00037	Fer4	0.93
PF02517	Rce1-like	0.93
PF03916	NrfD	0.93
PF06068	TIP49	0.93
PF00890	FAD_binding_2	0.93
PF01431	Peptidase_M13	0.93
PF12846	AAA_10	0.93
PF00275	EPSP_synthase	0.93
PF05235	CHAD	0.93
PF13462	Thioredoxin_4	0.93
PF06480	FtsH_ext	0.93
PF00034	Cytochrom_C	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0384	Predicted epimerase YddE/YHI9, PhzF superfamily	General function prediction only [R]	15.74
COG0138	AICAR transformylase/IMP cyclohydrolase PurH	Nucleotide transport and metabolism [F]	1.85
COG3590	Predicted metalloendopeptidase	Posttranslational modification, protein turnover, chaperones [O]	1.85
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG1224	DNA helicase TIP49, TBP-interacting protein	Transcription [K]	0.93
COG1256	Flagellar hook-associated protein FlgK	Cell motility [N]	0.93
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG1558	Flagellar basal body rod protein FlgC	Cell motility [N]	0.93
COG1749	Flagellar hook protein FlgE	Cell motility [N]	0.93
COG1815	Flagellar basal body rod protein FlgB	Cell motility [N]	0.93
COG3025	Inorganic triphosphatase YgiF, contains CYTH and CHAD domains	Inorganic ion transport and metabolism [P]	0.93
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.93
COG4786	Flagellar basal body rod protein FlgG	Cell motility [N]	0.93
COG4787	Flagellar basal body rod protein FlgF	Cell motility [N]	0.93
COG5607	CHAD domain, binds inorganic polyphosphates	Function unknown [S]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.04 %
Unclassified	root	N/A	37.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.04 %
Unclassified	root	N/A	37.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.04 %
Unclassified	root	N/A	37.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	41.67 %
Unclassified	root	N/A	37.96 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.96 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	30.56 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.70 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.96 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	30.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.70 %
Candidatus Sumerlaeota	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Sumerlaeota	0.93 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.96 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	30.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.70 %
unclassified Candidatus Sumerlaeota	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Sumerlaeota → unclassified Candidatus Sumerlaeota	0.93 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.96 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	26.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.70 %
candidate division BRC1 bacterium ADurb.BinA292	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Sumerlaeota → unclassified Candidatus Sumerlaeota → candidate division BRC1 bacterium ADurb.BinA292	0.93 %
Ralstonia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.96 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	20.37 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.70 %
Ralstonia solanacearum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia solanacearum	0.93 %
candidate division BRC1 bacterium ADurb.BinA292	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Sumerlaeota → unclassified Candidatus Sumerlaeota → candidate division BRC1 bacterium ADurb.BinA292	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001213\|JGIcombinedJ13530_100256947	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1501	Open in IMG/M
3300004092\|Ga0062389_100524791	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1336	Open in IMG/M
3300004152\|Ga0062386_100106303	Not Available	2160	Open in IMG/M
3300004152\|Ga0062386_100136949	Not Available	1903	Open in IMG/M
3300004152\|Ga0062386_101424434	Not Available	577	Open in IMG/M
3300005436\|Ga0070713_101350928	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300005439\|Ga0070711_100948463	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	736	Open in IMG/M
3300005524\|Ga0070737_10016721	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	5336	Open in IMG/M
3300005529\|Ga0070741_10159570	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Sumerlaeota → unclassified Candidatus Sumerlaeota → candidate division BRC1 bacterium ADurb.BinA292	2252	Open in IMG/M
3300005529\|Ga0070741_11666051	Not Available	520	Open in IMG/M
3300005533\|Ga0070734_10011585	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	6413	Open in IMG/M
3300005538\|Ga0070731_10009769	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	7191	Open in IMG/M
3300005538\|Ga0070731_10253022	All Organisms → cellular organisms → Bacteria	1170	Open in IMG/M
3300005541\|Ga0070733_10023176	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	3870	Open in IMG/M
3300005610\|Ga0070763_10112255	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1387	Open in IMG/M
3300005764\|Ga0066903_105724652	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	653	Open in IMG/M
3300005938\|Ga0066795_10182432	Not Available	625	Open in IMG/M
3300006176\|Ga0070765_100417105	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1255	Open in IMG/M
3300006642\|Ga0075521_10028917	All Organisms → cellular organisms → Bacteria	2317	Open in IMG/M
3300006795\|Ga0075520_1086726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia solanacearum	1439	Open in IMG/M
3300006949\|Ga0075528_10209048	Not Available	530	Open in IMG/M
3300009101\|Ga0105247_10197467	All Organisms → cellular organisms → Bacteria	1350	Open in IMG/M
3300009518\|Ga0116128_1086390	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	940	Open in IMG/M
3300009519\|Ga0116108_1158333	Not Available	671	Open in IMG/M
3300009623\|Ga0116133_1005486	All Organisms → cellular organisms → Bacteria → Acidobacteria	3202	Open in IMG/M
3300009624\|Ga0116105_1054590	Not Available	925	Open in IMG/M
3300009639\|Ga0116122_1027779	All Organisms → cellular organisms → Bacteria → Acidobacteria	1993	Open in IMG/M
3300009645\|Ga0116106_1088724	Not Available	1005	Open in IMG/M
3300009665\|Ga0116135_1104302	All Organisms → cellular organisms → Bacteria	1028	Open in IMG/M
3300009672\|Ga0116215_1077443	All Organisms → cellular organisms → Bacteria	1496	Open in IMG/M
3300009764\|Ga0116134_1049373	All Organisms → cellular organisms → Bacteria	1613	Open in IMG/M
3300010339\|Ga0074046_10034894	All Organisms → cellular organisms → Bacteria → Acidobacteria	3414	Open in IMG/M
3300010339\|Ga0074046_10331891	Not Available	929	Open in IMG/M
3300010341\|Ga0074045_10162701	All Organisms → cellular organisms → Bacteria → Acidobacteria	1511	Open in IMG/M
3300010341\|Ga0074045_10222398	All Organisms → cellular organisms → Bacteria → Acidobacteria	1257	Open in IMG/M
3300010376\|Ga0126381_102257934	Not Available	782	Open in IMG/M
3300010379\|Ga0136449_104186020	Not Available	535	Open in IMG/M
3300011418\|Ga0153954_1020363	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1803	Open in IMG/M
3300014155\|Ga0181524_10084926	Not Available	1823	Open in IMG/M
3300014156\|Ga0181518_10004909	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	11768	Open in IMG/M
3300014162\|Ga0181538_10186789	All Organisms → cellular organisms → Bacteria → Acidobacteria	1170	Open in IMG/M
3300014164\|Ga0181532_10043073	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3027	Open in IMG/M
3300014199\|Ga0181535_10178587	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1315	Open in IMG/M
3300014200\|Ga0181526_10276947	Not Available	1069	Open in IMG/M
3300014492\|Ga0182013_10086044	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2184	Open in IMG/M
3300014495\|Ga0182015_10248247	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1176	Open in IMG/M
3300014838\|Ga0182030_10001986	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	43108	Open in IMG/M
3300015206\|Ga0167644_1100394	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	861	Open in IMG/M
3300015371\|Ga0132258_12393062	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1323	Open in IMG/M
3300016702\|Ga0181511_1244644	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	9004	Open in IMG/M
3300016730\|Ga0181515_1440932	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2232	Open in IMG/M
3300017925\|Ga0187856_1256208	Not Available	615	Open in IMG/M
3300017940\|Ga0187853_10191206	Not Available	962	Open in IMG/M
3300017940\|Ga0187853_10515656	Not Available	521	Open in IMG/M
3300017943\|Ga0187819_10344613	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300017946\|Ga0187879_10057102	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2289	Open in IMG/M
3300017946\|Ga0187879_10400863	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300017948\|Ga0187847_10006367	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	8347	Open in IMG/M
3300017948\|Ga0187847_10411635	Not Available	744	Open in IMG/M
3300017955\|Ga0187817_10455904	Not Available	816	Open in IMG/M
3300017970\|Ga0187783_10190975	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1506	Open in IMG/M
3300018043\|Ga0187887_10691543	Not Available	602	Open in IMG/M
3300018046\|Ga0187851_10131277	Not Available	1531	Open in IMG/M
3300019787\|Ga0182031_1164707	All Organisms → cellular organisms → Bacteria	2087	Open in IMG/M
3300020582\|Ga0210395_10961619	Not Available	633	Open in IMG/M
3300020583\|Ga0210401_11185172	Not Available	622	Open in IMG/M
3300021181\|Ga0210388_10518215	Not Available	1046	Open in IMG/M
3300021401\|Ga0210393_10190252	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1657	Open in IMG/M
3300021401\|Ga0210393_10367160	Not Available	1172	Open in IMG/M
3300021406\|Ga0210386_10398918	Not Available	1185	Open in IMG/M
3300021477\|Ga0210398_10519284	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	969	Open in IMG/M
3300022524\|Ga0224534_1027998	Not Available	1389	Open in IMG/M
3300025473\|Ga0208190_1049425	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	886	Open in IMG/M
3300025506\|Ga0208937_1133578	Not Available	531	Open in IMG/M
3300025581\|Ga0208355_1030445	All Organisms → cellular organisms → Bacteria	1479	Open in IMG/M
3300025619\|Ga0207926_1091152	Not Available	756	Open in IMG/M
3300025650\|Ga0209385_1001715	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	9464	Open in IMG/M
3300025829\|Ga0209484_10174139	Not Available	530	Open in IMG/M
3300025928\|Ga0207700_10120564	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2126	Open in IMG/M
3300026273\|Ga0209881_1168252	Not Available	547	Open in IMG/M
3300027609\|Ga0209221_1181417	Not Available	512	Open in IMG/M
3300027812\|Ga0209656_10066047	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1986	Open in IMG/M
3300027824\|Ga0209040_10101314	All Organisms → cellular organisms → Bacteria	1630	Open in IMG/M
3300027826\|Ga0209060_10035919	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2461	Open in IMG/M
3300027854\|Ga0209517_10475339	Not Available	686	Open in IMG/M
3300027867\|Ga0209167_10051933	All Organisms → cellular organisms → Bacteria → Acidobacteria	2017	Open in IMG/M
3300027869\|Ga0209579_10019880	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3804	Open in IMG/M
3300027869\|Ga0209579_10097485	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1558	Open in IMG/M
3300028017\|Ga0265356_1018037	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	763	Open in IMG/M
3300029817\|Ga0247275_1099037	Not Available	772	Open in IMG/M
3300030007\|Ga0311338_11107944	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300031715\|Ga0307476_10382910	All Organisms → cellular organisms → Bacteria	1038	Open in IMG/M
3300031823\|Ga0307478_11154968	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300032770\|Ga0335085_10182805	All Organisms → cellular organisms → Bacteria	2587	Open in IMG/M
3300032783\|Ga0335079_10004596	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	15896	Open in IMG/M
3300032805\|Ga0335078_12658051	Not Available	511	Open in IMG/M
3300032829\|Ga0335070_10396539	Not Available	1321	Open in IMG/M
3300032892\|Ga0335081_10070514	All Organisms → cellular organisms → Bacteria	5347	Open in IMG/M
3300032892\|Ga0335081_10608739	All Organisms → cellular organisms → Bacteria	1346	Open in IMG/M
3300032893\|Ga0335069_10353762	Not Available	1735	Open in IMG/M
3300032895\|Ga0335074_10105909	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3688	Open in IMG/M
3300032896\|Ga0335075_10400014	Not Available	1461	Open in IMG/M
3300032897\|Ga0335071_11898258	All Organisms → cellular organisms → Bacteria → Acidobacteria	539	Open in IMG/M
3300032955\|Ga0335076_11239405	Not Available	630	Open in IMG/M
3300033134\|Ga0335073_10054053	All Organisms → cellular organisms → Bacteria	5353	Open in IMG/M
3300033134\|Ga0335073_10728550	Not Available	1078	Open in IMG/M
3300033134\|Ga0335073_10877536	Not Available	949	Open in IMG/M
3300033158\|Ga0335077_10518486	All Organisms → cellular organisms → Bacteria	1258	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.30%
Host-Associated	Host-Associated	3.70%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	62.96%
Aquatic	Environmental → Aquatic	33.33%
Plants	Host-Associated → Plants	2.78%
Fungi	Host-Associated → Fungi	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.11%
Freshwater	Environmental → Aquatic → Freshwater	32.41%
Peat	Environmental → Terrestrial → Peat	1.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.85%
Marine	Environmental → Aquatic → Marine	0.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.93%
Mycelium	Host-Associated → Fungi → Mycelium	0.93%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	32.41%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	30.56%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	24.07%
Loam	Environmental → Terrestrial → Soil → Loam	6.48%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.85%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	21.30%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	18.52%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.74%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	9.26%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.33%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	6.48%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.56%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.78%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.85%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	13.89%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	10.19%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	10.19%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	9.26%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	6.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.48%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.56%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	5.56%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	3.70%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.78%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	2.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.78%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.85%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.93%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.93%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.93%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.93%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.93%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.93%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005524	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005938	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300006795	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B	Environmental	Open in IMG/M
3300006949	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-16B	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009639	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011418	Attine ant fungus gardens microbial communities from Florida, USA - TSFL038 MetaG	Host-Associated	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015206	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016702	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016730	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300022524	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 20-24	Environmental	Open in IMG/M
3300025473	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10 (SPAdes)	Environmental	Open in IMG/M
3300025506	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40 (SPAdes)	Environmental	Open in IMG/M
3300025581	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025619	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025650	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B (SPAdes)	Environmental	Open in IMG/M
3300025829	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-16B (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026273	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193 (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028017	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4	Host-Associated	Open in IMG/M
3300029817	Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Bog25	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1002569472	3300001213	Wetland	MTTFFLSTMLLLTIVAAFAFGVAVGYWVICAFLNFFNPRRMRSKPAATAVLAPTSGD*
Ga0062389_1005247912	3300004092	Bog Forest Soil	MTTLFFSSLLLLTILAAFAFGVAAGYWVICGFLNLMNPRRSRNKPARATELAPTASGD*
Ga0062386_1001063033	3300004152	Bog Forest Soil	MGTFFNSTLLLLTIVAAFAFGVAAGYWVICGFLNLFDPARTEPKLASKPALAPTSSGD*
Ga0062386_1001369492	3300004152	Bog Forest Soil	LLIAIEKTQLLTMGTFFNSTLLLLTIIAAFAFGVASGYWVIRWFLNFFNPSRNETRLASSKAALATTTSGD*
Ga0062386_1014244341	3300004152	Bog Forest Soil	MERASSASGTNTYGMTALFYSSLLLLTIIASFAFGIAAGYWVICGFLNLFDPARTQKKPAPKPALAPTGD*
Ga0070713_1013509281	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTTFFLSTMLLLTIVAAFAFGVAAGYWVICAFLNFFNPRRSRSKAAASPVLAPSSGD*
Ga0070711_1009484632	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MTTFFLSTMLLLTIVAAFAFGVASGYWVICGFLHFFNPARTRKPKRAPALAPISGD*
Ga0070737_100167212	3300005524	Surface Soil	MMTAFFFSTLLLLTIMAAFALGIAAGYWVIVAFLNLLNPNHTHKKQARAAALAPTTSGD*
Ga0070741_101595702	3300005529	Surface Soil	MTGFFFSSLLLLTIVAAFAFGVAAGYWVICGFLNLFNPARTQKKPSTAPALAPITSGD*
Ga0070741_116660512	3300005529	Surface Soil	MTTFFLSTMLLLTIIAAFAFGVAAGYWVICAFLNFFNPARTGRKPNRAPALAPTSGD*
Ga0070734_100115859	3300005533	Surface Soil	MASFFFSSLLLLTIVAAFAFGVAAGYWVICGFLNLFNPSRKQKKPSSAPALAPMPSGD*
Ga0070731_100097694	3300005538	Surface Soil	MSTFFFSSMLLLTIVAAFAFGVAAAYWTICAFLNLFSPTRTAKPAPALAPTTTGD*
Ga0070731_102530223	3300005538	Surface Soil	MTGFFFSSLLLLTIVAAFAFGVAAGYWVICGFLNLFNPARAQKKPSTAPALTPITSGD*
Ga0070733_100231762	3300005541	Surface Soil	MSTFFFSSMLLLTIVAAFAFGVAAAYWTICAFLNLFSPTRTAKPAPATALAPTTTGD*
Ga0070763_101122552	3300005610	Soil	MQQAFFASERLTNVMTTFFLSTLLLLTIVAAFAFGVAAGYWVICLFLNFFNPTRTRNKPARTPALAPSSGD*
Ga0066903_1057246522	3300005764	Tropical Forest Soil	VPASNKATMTTFFLSTLLLLTIVAAFAFGVAAGYWVICGFLNFFNPARSRKPRRAPALAPSSGD*
Ga0066795_101824322	3300005938	Soil	MTTFLLSTLLLFTIVAAFAFGVAMGYWVICTVLNLFHPNRIANKPSSAPALAPTAGGD*
Ga0070765_1004171052	3300006176	Soil	MTTFLLSTMLLLTIIAAFAFGVAAGYWVICAFLNLFNPTRTRNKPTRAPALAPSSGD*
Ga0075521_100289173	3300006642	Arctic Peat Soil	MTTFLLSILLLFTIVAAFAFGVAMGYWVICGLLNLFHPDRTQKKPSSAPALAPTAGGD*
Ga0075520_10867261	3300006795	Arctic Peat Soil	MTTFLLSTLLLFTIVAAFAFGVAMGYWVICGVLNLFHPGRTQDKPSSAPALAPTA
Ga0075528_102090482	3300006949	Arctic Peat Soil	MTTFLLSTLLLFTIVAAFAFGVAMGYWVICGVLNLFHPGRTQDKPSSAPALAPTAGGD*
Ga0105247_101974672	3300009101	Switchgrass Rhizosphere	MNTFFYSTLLLLTIIAAFGFGVASGYWVICAFLNLFDPAGTQKKATARAALVPTTSGD*
Ga0116128_10863901	3300009518	Peatland	IMTILSSSILLLLTIVAAFAFGVAAGYWVICGFLNLMNPRRSGKPARATTFAPTTSGD*
Ga0116108_11583332	3300009519	Peatland	MTTLSSSILLLLTIVAAFAFGVAAGYWVICGFLNLMNPRRSGKPARATTFAPTTSGD*
Ga0116133_10054863	3300009623	Peatland	MTILSSSILLLLTIVAAFAFGVAAGYWVICGFLNLMNPRRSGKPARATTFAPTTSGD*
Ga0116105_10545902	3300009624	Peatland	MTTLFFSSLLLLTIVAAFAFGVAAGYWVICGFLNLMNPRRSRNKPARATELAPTTSGD*
Ga0116122_10277793	3300009639	Peatland	MTTFLLSILLLFTIVAAFAFGVAMGYWVICGVLNLSHPNRTPKKPSSAPALAPTVGGD*
Ga0116106_10887241	3300009645	Peatland	MTTLSSSILLLLTIVAAFAFGVAAGYWVICGFLNLMNPRRNRAARATELAPTTSGD*
Ga0116135_11043022	3300009665	Peatland	MTTFFLSSMLLLTIVAAFAFGVAAGYWVICGFLNLFNPKRTRNKPASAQVLAPSSGD*
Ga0116215_10774432	3300009672	Peatlands Soil	MTTLSSSVLLLLTIVAAFAFGVAAGYWVICGFLNLMHPRRSRNKPARATEFAPTTSGD*
Ga0116134_10493733	3300009764	Peatland	SSILLLLTIVAAFAFGVAAGYWVICGFLNLMNPRRSGKPARATTFAPTTSGD*
Ga0074046_100348942	3300010339	Bog Forest Soil	MNTFLLSFLLLFTIIAAFVFGIAMGYWVICGVLNFFNPRRTPGEPSHAPALAHTHSGD*
Ga0074046_103318912	3300010339	Bog Forest Soil	MGTFFNSTLLLLTIIAAFAFGVASGYWAIRGFLNLFNPSRSEAKLASSNAALATTTSGD*
Ga0074045_101627013	3300010341	Bog Forest Soil	MNTFLLSFLLLFTIIAAFVFGIAMGYWVICGVLNFFNPRRTSGKPSRAPVLAHTHSGD*
Ga0074045_102223982	3300010341	Bog Forest Soil	LLTIVAAFAFGVATGYWVICGVLNLFHPRRMQNKPSSAPALAPTAGGD*
Ga0126381_1022579342	3300010376	Tropical Forest Soil	MTTFFLSIMLLLTIVAAFALGVAAGYWVICAFLNFFNPSRNKPTRAPALVHTTSGD*
Ga0136449_1041860201	3300010379	Peatlands Soil	MTTFFYSTLLLLTIIAAFAFGVAAGYWVICGFLNLFDPSRTQDKPRRAAALAPTASGD*
Ga0153954_10203632	3300011418	Attine Ant Fungus Gardens	MTTFFLSSILLLTIMAAFAFGVAAGYWVICGFLNFFNPARTDNKPARSAALAPSGGD*
Ga0181524_100849262	3300014155	Bog	MTILSSSILLLLTIVAAFAFGVAAGYWVICGFLNLMNPRRSGKPARANELAPTTSGD*
Ga0181518_100049097	3300014156	Bog	MTTFFLSTLLLLTIIAAFVFGVAAGYWVICGFLNLLKPKRTRNKPAHAPALAPTSGD*
Ga0181538_101867891	3300014162	Bog	MTTFLLSILLLLTIVSAFAFGVAAGYWVIRGFLNFFDPARPRNKMPRTAALAPSGD*
Ga0181532_100430732	3300014164	Bog	MTTFFLTILFLLTIAGAFVFGVAAGYWVICGFLNLFDPSRTRKKPTHSPALAPISGD*
Ga0181535_101785872	3300014199	Bog	MTTFFLTILFLLTIAGAFVFGVAAGYWVICGFLNLFDPSRTRKTPTHSPALAPISGD*
Ga0181526_102769472	3300014200	Bog	MTSFFSSTLLLLTIVAAFAFGVAAGYWVICGLLNWLNRSRTATAPARTPAFASNPSGD*
Ga0182013_100860443	3300014492	Bog	MTTLSSSILLLLTIVAAFAFGVAAGYWVICGFLNVMNPRRNRAARTAELAPTASGD*
Ga0182015_102482472	3300014495	Palsa	MTTFLLTTLFLLTIAGAFVFGVAAGYWVICGFLNLFDPSRMRKKPAHSPALAPISGD*
Ga0182030_1000198630	3300014838	Bog	MTTLSSSILLLLTIVAAFAFGVAAGYWVICGFLNVMNPRRNRAARTAEFAPTASGD*
Ga0167644_11003941	3300015206	Glacier Forefield Soil	MTTFFLSTMLLLTIVAAFAFGVAAGYWVICGFLNFFNPRRTRNKPASTPVLAPSSGD*
Ga0132258_123930622	3300015371	Arabidopsis Rhizosphere	MATLFFSTLLLLTIVGAFAFGVAAGYWVICGFLNLFHPSGDSKVEPAASALASPASGD*
Ga0181511_124464410	3300016702	Peatland	MTILSSSILLLLTIVAAFAFGVAAGYWVICGFLNLMNPRRSGKPARANELAPTTSGD
Ga0181515_14409321	3300016730	Peatland	MTTFFLSTLLLLTIIAAFVFGVAAGYWVICGFLNLLKPKRTRNKPAHAPALAPTSGD
Ga0187856_12562081	3300017925	Peatland	MTTFLLSILLLFTIVAAFAFGVAMGYWVICGVLNLSHPNRTPKKPSSAPALAPTVGGD
Ga0187853_101912061	3300017940	Peatland	MTILSSSILLLLTIVAAFAFGVAAGYWVICGFLNLMNPRRSGKPARATTFAPTTSGD
Ga0187853_105156562	3300017940	Peatland	LLTIVAAFAFGVAAGYWVICGFLNLMNPRRSGKPARATTFAPTTSGD
Ga0187819_103446132	3300017943	Freshwater Sediment	MTTLFYSTLLLLTIVAAFAFGIAAGYWAICGFLNLFNPSRTATNLARKPALVTTARAES
Ga0187879_100571022	3300017946	Peatland	MTTFFLSSMLLLTIVAAFAFGVAAGYWVICGFLNLFNPKRTRNKPASAQVLAPSSGD
Ga0187879_104008632	3300017946	Peatland	MTSFFSSTLLLLTIVAAFAFGVAAGYWVICGLLNWLNRSRTATAPARTPAFASNPSGD
Ga0187847_100063677	3300017948	Peatland	MTTLFFSSLLLLTIVAAFAFGVAAGYWVICGFLNLMNPRRSRNKPARATELAPTTSGD
Ga0187847_104116352	3300017948	Peatland	SSILLLLTIVAAFAFGVAAGYWVICGFLNLMNPRRNRAARATELAPTTSGD
Ga0187817_104559042	3300017955	Freshwater Sediment	MTALFYSSLLLLTIIASFAFGIAAGYWVICGFLNLFDPARTQKKPAPKPALAPTGD
Ga0187783_101909752	3300017970	Tropical Peatland	VARRIRKNDEQSMTTFFLSTLLLLTIVAAFAFGVAAGYWVICGFLNLFNPSRTRSKPAPATALAPTPSGD
Ga0187887_106915431	3300018043	Peatland	MTTLSSSILLLLTIVAAFAFGVAAGYWVICGFLNLMNPRRSGKPARSTE
Ga0187851_101312771	3300018046	Peatland	MTTLSSSILLLLTIVAAFAFGVAAGYWVICGFLNLMNPRRNRAARATELAPTTSGD
Ga0182031_11647072	3300019787	Bog	MTTLSSSILLLLTIVAAFAFGVAAGYWVICGFLNVMNPRRNRAARTAEFAPTASGD
Ga0210395_109616191	3300020582	Soil	MTTFLLSTMLLLTIIAAFAFGVAAGYWVICAFLNLFNPTRTRNKPTRAPALAPSSGD
Ga0210401_111851721	3300020583	Soil	MQQAFFASERLTNVMTTFFLSTLLLLTIVAAFAFGVAAGYWVICLFLNFFNPTRTRNKPARTPALAPSSGD
Ga0210388_105182152	3300021181	Soil	MTTFLLSTLLLLTIVAAFAFGVAAGYWVICLFLNFFNPTRTRNKPARTPALAPISGD
Ga0210393_101902522	3300021401	Soil	MTTFLLSTMLLLTIVAAFAFGVAAGYWVICAFLNFFNPVRTRTKPASAPVLAPSSGD
Ga0210393_103671601	3300021401	Soil	MTTFFLSTMLLLTIVAAFAFGVAAGYWVICGFLNFFNPRRTRNKPASTPVLAPSSGD
Ga0210386_103989181	3300021406	Soil	MQQAFFASERLTNVMTTFFLSTLLLLTIVAAFAFGVAAGYWVICLFLNFFNPTRTRNKPAHTPALAPSSGD
Ga0210398_105192842	3300021477	Soil	MLLLTIIAAFAFGVAAGYWVICAFLNLFNPTRTRNKPTRAPALAPSSGD
Ga0224534_10279983	3300022524	Soil	VGSGASKEENDMTTFLLSTLLLFTIVAAFAFGVAVGYWVICGVLSLFHPGRTQDKPSSAPALAPTAGGD
Ga0208190_10494251	3300025473	Peatland	LLLTIVAAFAFGVAAGYWVICGFLNLMNPRRSGKPARATTFAPTTSGD
Ga0208937_11335781	3300025506	Peatland	AGSGASKEENDMTTFLLSILLLFTIVAAFAFGVAMGYWVICGVLNLSHPNRTPKKPSSAPALAPTVGGD
Ga0208355_10304451	3300025581	Arctic Peat Soil	MTTFLLSILLLFTIVAAFAFGVAMGYWVICAVLNLFHPNRTPNKPSSAPALAPTAGGD
Ga0207926_10911521	3300025619	Arctic Peat Soil	MTTFLLSTLLLFTIVAAFAFGVAMGYWVICAVLNLFHPNRIANKPSSAPALAPTAGGD
Ga0209385_10017155	3300025650	Arctic Peat Soil	MTTFLLSILLLFTIVAAFAFGVAMGYWVICGLLNLFHPDRTQKKPSSAPALAPTAGGD
Ga0209484_101741391	3300025829	Arctic Peat Soil	MTTFLLSTLLLFTIVAAFAFGVAMGYWVICGVLNLFHPGRTQDKPSSAPALAPTAGGD
Ga0207700_101205642	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MTTFFLSTMLLLTIVAAFAFGVAAGYWVICAFLNFFNPRRSRSKAAASPVLAPSSGD
Ga0209881_11682521	3300026273	Soil	MTTFLLSTLLLFTIVAAFAFGVAMGYWVICTVLNLFHPNRIANKPSSAPALAPTAGGD
Ga0209221_11814172	3300027609	Forest Soil	VERAQNDGMTTFFYSTLLLLTIVAAFAFGVVAGYWVICGFLNLFNPSRTQHKPTPAPSLARTAAGD
Ga0209656_100660472	3300027812	Bog Forest Soil	MGTFFNSTLLLLTIIAAFAFGVASGYWAIRGFLNLFNPSRSEAKLASSNAALATTTSGD
Ga0209040_101013142	3300027824	Bog Forest Soil	MGTFFNSTLLLLTIIAAFAFGVASGYWVIRWFLNFFNPSRNETRLASSKAALATTTSGD
Ga0209060_100359192	3300027826	Surface Soil	MASFFFSSLLLLTIVAAFAFGVAAGYWVICGFLNLFNPSRKQKKPSSAPALAPMPSGD
Ga0209517_104753391	3300027854	Peatlands Soil	MTTLSSSVLLLLTIVAAFAFGVAAGYWVICGFLNLMHPRRSRNKPARATEFAPTTSGD
Ga0209167_100519333	3300027867	Surface Soil	MSTFFFSSMLLLTIVAAFAFGVAAAYWTICAFLNLFSPTRTAKPAPATALAPTTTGD
Ga0209579_100198803	3300027869	Surface Soil	MSTFFFSSMLLLTIVAAFAFGVAAAYWTICAFLNLFSPTRTAKPAPALAPTTTGD
Ga0209579_100974852	3300027869	Surface Soil	MTGFFFSSLLLLTIVAAFAFGVAAGYWVICGFLNLFNPARAQKKPSTAPALAPITSGD
Ga0265356_10180371	3300028017	Rhizosphere	MTTFFLSTLLLLTIVAAFAFGVAAGYWVICLFLNFFNPTRTRNKPARTPALAPSSGD
Ga0247275_10990372	3300029817	Soil	EENDMTTFLLSILLLFTIVAAFAFGVAMGYWALCAVLNLFHPNRTPNKPSSAPALAPTAGGD
Ga0311338_111079442	3300030007	Palsa	MTTFFLSTLLLLTIVAAFAFGVAAGYWVICGFLNLFNPRRTGNKPASAPVLAPSSGD
Ga0307476_103829102	3300031715	Hardwood Forest Soil	MQQAFFALERLTNVMTTFFLSTLLLLTIVAAFAFGVAAGYWVICLFLNFFNPTRTRNKPARTPALAPSSGD
Ga0307478_111549681	3300031823	Hardwood Forest Soil	FFLSTLLLLTIVAAFAFGVAAGYWVICLFLNFFNPTRTRNKPARTPALAPSSGD
Ga0335085_101828051	3300032770	Soil	MTAFFYSSLLLLTIIASFAFGIAAGYWVICGFLNLFNPNRTQEPAPKPALAPSSGD
Ga0335079_1000459615	3300032783	Soil	MTSFFSSTLLLLTIVAAFAFGVAAGHWVICGLLNWLNRSRTAAEPARTPAFAPHPSGD
Ga0335078_126580511	3300032805	Soil	MTTFFLSSLLLLTIIAAFAFGVAAGYWVICGFLNLFNPSRKSKTPSAAPVLAPSASGD
Ga0335070_103965391	3300032829	Soil	MTAVSYSTLLLLTIVAAFAFGVAAAYWVICAFLNLFDPSRGAKTHATAPVLATTSSGD
Ga0335081_100705143	3300032892	Soil	MTTWFYSTLLLLTIIAAFAFGIAAGYWVICGFLNLFNPSRTQTNVAPTRALGTASVET
Ga0335081_106087392	3300032892	Soil	MTGFALSFLLLFTIIAAFAFGIAAGYWVICGILNFFRPAPVKKPQPKQALASSGD
Ga0335069_103537623	3300032893	Soil	MNAFFSSTLLLLTIIAAFTFGIAAGYWVLCGFLHFFDPKRTARSAERAPALAPTSGD
Ga0335074_101059095	3300032895	Soil	MIGFFYSTLLLLTIVAAFAFGIAVGYWVICGFLNLFDPSRKHRKPSAAPALAPSATGD
Ga0335075_104000142	3300032896	Soil	MTTIFYSTLLLLTIAAAFAFGVAAGYWVICGFLNLVNPSKPDNTPAPARSLAPTAGD
Ga0335071_118982581	3300032897	Soil	LLLLTIIASFAFGIAAGYWVICGFLNLFNPHRAEEKPAPKPALVPSSGD
Ga0335076_112394052	3300032955	Soil	MTTFFLSSLLLLTIIAAFAFGVAAGYWVICGFLNLFNPSRKTKTPSAAPALAPSASGD
Ga0335073_100540531	3300033134	Soil	MTSFFYSSLLLLTIIAAFAFGVAAGYWVICGFLNFFNPARAPKKTAATALAPASGD
Ga0335073_107285501	3300033134	Soil	MTSFFYSSLLLLTIIAAFAFGVAAGYWVICGFLNLFNPARAPKKTAATALAPASGD
Ga0335073_108775362	3300033134	Soil	MATFLASTLLLLTILAAFAFGVAAGYWVICSFLNLFDPGRAGKKPTTAPALAPTATGD
Ga0335077_105184862	3300033158	Soil	MTAFFYSTLLLLTIVAAFAFGVAAGYWVICGFLNLFDPARTARESVPTTALAPTTSGD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090658

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences