Metagenome / Metatranscriptome Family F090635

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090635
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	57 residues
Representative Sequence	MIDRLGGNRQPDLFVRTTNILDPKRIPARIQTELASLLKLLMAPHIAADVAPPREAADE
Number of Associated Samples	85
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	91.67 %
% of genes near scaffold ends (potentially truncated)	20.37 %
% of genes from short scaffolds (< 2000 bps)	83.33 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (87.037 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (25.926 % of family members)
Environment Ontology (ENVO)	Unclassified (34.259 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.778 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.63% β-sheet: 0.00% Coil/Unstructured: 64.37%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00239	Resolvase	45.37
PF13408	Zn_ribbon_recom	18.52
PF07508	Recombinase	10.19
PF02810	SEC-C	0.93
PF00665	rve	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	55.56
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	45.37
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.93
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.93
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.93
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.04 %
Unclassified	root	N/A	12.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.04 %
Unclassified	root	N/A	12.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.04 %
Unclassified	root	N/A	12.96 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	44.44 %
Unclassified	root	N/A	12.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	33.33 %
Unclassified	root	N/A	12.96 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	25.93 %
Unclassified	root	N/A	12.96 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.96 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	12.04 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	3.70 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	1.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.96 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	12.04 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	3.70 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	1.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.96 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	2.78 %
unclassified Azospirillum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum	1.85 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.93 %
Mesorhizobium silamurunense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium silamurunense	0.93 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.96 %
Azospirillum sp. A1-3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. A1-3	1.85 %
Mesorhizobium sp. LNHC252B00	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. LNHC252B00	0.93 %
Mesorhizobium sp. LSJC264A00	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. LSJC264A00	0.93 %
Mesorhizobium sp. AR07	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. AR07	0.93 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.93 %
Mesorhizobium silamurunense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium silamurunense	0.93 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004091\|Ga0062387_100021295	Not Available	2685	Open in IMG/M
3300004633\|Ga0066395_10514319	Not Available	692	Open in IMG/M
3300005332\|Ga0066388_102293724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	976	Open in IMG/M
3300005332\|Ga0066388_103429198	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300005363\|Ga0008090_10121586	All Organisms → cellular organisms → Bacteria	1616	Open in IMG/M
3300005586\|Ga0066691_10657578	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300005764\|Ga0066903_102067469	All Organisms → cellular organisms → Bacteria	1096	Open in IMG/M
3300005764\|Ga0066903_107484857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	563	Open in IMG/M
3300006028\|Ga0070717_11660019	Not Available	579	Open in IMG/M
3300006041\|Ga0075023_100200495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	769	Open in IMG/M
3300006047\|Ga0075024_100673945	Not Available	565	Open in IMG/M
3300006050\|Ga0075028_100020165	All Organisms → cellular organisms → Bacteria → Proteobacteria	2928	Open in IMG/M
3300006176\|Ga0070765_102023167	Not Available	539	Open in IMG/M
3300009792\|Ga0126374_10338217	All Organisms → cellular organisms → Bacteria → Proteobacteria	1027	Open in IMG/M
3300009826\|Ga0123355_10214558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2781	Open in IMG/M
3300009826\|Ga0123355_10409372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1742	Open in IMG/M
3300009826\|Ga0123355_10620013	All Organisms → cellular organisms → Bacteria	1275	Open in IMG/M
3300009826\|Ga0123355_10929785	All Organisms → cellular organisms → Bacteria	938	Open in IMG/M
3300010043\|Ga0126380_11795139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	554	Open in IMG/M
3300010047\|Ga0126382_10379126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1095	Open in IMG/M
3300010047\|Ga0126382_10723186	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300010048\|Ga0126373_10082126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2941	Open in IMG/M
3300010048\|Ga0126373_10361948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1466	Open in IMG/M
3300010049\|Ga0123356_11572339	All Organisms → cellular organisms → Bacteria → Proteobacteria	813	Open in IMG/M
3300010162\|Ga0131853_11175569	Not Available	576	Open in IMG/M
3300010358\|Ga0126370_10576232	All Organisms → cellular organisms → Bacteria	967	Open in IMG/M
3300010358\|Ga0126370_10862570	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300010359\|Ga0126376_11329575	Not Available	740	Open in IMG/M
3300010360\|Ga0126372_10116496	All Organisms → cellular organisms → Bacteria	2052	Open in IMG/M
3300010361\|Ga0126378_11044273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	920	Open in IMG/M
3300010361\|Ga0126378_11811567	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300010375\|Ga0105239_11768774	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300010376\|Ga0126381_102499877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	740	Open in IMG/M
3300010376\|Ga0126381_105111936	All Organisms → cellular organisms → Bacteria → Proteobacteria	502	Open in IMG/M
3300010398\|Ga0126383_10793347	All Organisms → cellular organisms → Bacteria	1030	Open in IMG/M
3300010398\|Ga0126383_10973092	Not Available	936	Open in IMG/M
3300010401\|Ga0134121_10861480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	876	Open in IMG/M
3300012169\|Ga0153990_1012399	All Organisms → cellular organisms → Bacteria	1834	Open in IMG/M
3300012948\|Ga0126375_10320891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1085	Open in IMG/M
3300012971\|Ga0126369_10906419	All Organisms → cellular organisms → Bacteria	967	Open in IMG/M
3300012971\|Ga0126369_12214912	All Organisms → cellular organisms → Bacteria → Proteobacteria	637	Open in IMG/M
3300013297\|Ga0157378_12751729	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300016270\|Ga0182036_10322819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1181	Open in IMG/M
3300016319\|Ga0182033_11240479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	669	Open in IMG/M
3300016341\|Ga0182035_10089741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. LSJC264A00	2221	Open in IMG/M
3300016404\|Ga0182037_10106943	All Organisms → cellular organisms → Bacteria	2027	Open in IMG/M
3300017821\|Ga0187812_1200131	All Organisms → cellular organisms → Bacteria → Proteobacteria	638	Open in IMG/M
3300017822\|Ga0187802_10006891	All Organisms → cellular organisms → Bacteria	3524	Open in IMG/M
3300017926\|Ga0187807_1260386	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300017927\|Ga0187824_10122138	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300017970\|Ga0187783_10049461	All Organisms → cellular organisms → Bacteria	3102	Open in IMG/M
3300017994\|Ga0187822_10280757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	582	Open in IMG/M
3300018064\|Ga0187773_10244310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	977	Open in IMG/M
3300018086\|Ga0187769_10755658	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300021088\|Ga0210404_10265362	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300021171\|Ga0210405_10517264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. A1-3	934	Open in IMG/M
3300021358\|Ga0213873_10053141	All Organisms → cellular organisms → Bacteria → Proteobacteria	1078	Open in IMG/M
3300021401\|Ga0210393_10969852	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300021403\|Ga0210397_10316377	All Organisms → cellular organisms → Bacteria → Proteobacteria	1150	Open in IMG/M
3300021404\|Ga0210389_11095138	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300021405\|Ga0210387_10860132	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300021420\|Ga0210394_11538290	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300021479\|Ga0210410_10997537	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300021479\|Ga0210410_11825077	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300021560\|Ga0126371_10293066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1752	Open in IMG/M
3300021560\|Ga0126371_10611454	All Organisms → cellular organisms → Bacteria	1239	Open in IMG/M
3300021560\|Ga0126371_13452361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. A1-3	533	Open in IMG/M
3300021861\|Ga0213853_11281391	All Organisms → cellular organisms → Bacteria	1174	Open in IMG/M
3300025900\|Ga0207710_10100278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1365	Open in IMG/M
3300027576\|Ga0209003_1017978	Not Available	1124	Open in IMG/M
3300027783\|Ga0209448_10019940	Not Available	2203	Open in IMG/M
3300027910\|Ga0209583_10029972	All Organisms → cellular organisms → Bacteria → Proteobacteria	1799	Open in IMG/M
3300031544\|Ga0318534_10204027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1141	Open in IMG/M
3300031545\|Ga0318541_10029287	Not Available	2716	Open in IMG/M
3300031545\|Ga0318541_10421186	All Organisms → cellular organisms → Bacteria → Proteobacteria	746	Open in IMG/M
3300031572\|Ga0318515_10735691	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300031724\|Ga0318500_10554516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	580	Open in IMG/M
3300031753\|Ga0307477_10465348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	862	Open in IMG/M
3300031763\|Ga0318537_10365835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	532	Open in IMG/M
3300031769\|Ga0318526_10029354	All Organisms → cellular organisms → Bacteria	1996	Open in IMG/M
3300031770\|Ga0318521_10250405	All Organisms → cellular organisms → Bacteria	1033	Open in IMG/M
3300031781\|Ga0318547_10554353	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300031782\|Ga0318552_10357155	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300031793\|Ga0318548_10541918	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300031795\|Ga0318557_10034573	All Organisms → cellular organisms → Bacteria	2063	Open in IMG/M
3300031797\|Ga0318550_10028834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	2375	Open in IMG/M
3300031799\|Ga0318565_10055497	Not Available	1847	Open in IMG/M
3300031799\|Ga0318565_10377647	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300031832\|Ga0318499_10018433	Not Available	2397	Open in IMG/M
3300031879\|Ga0306919_11244667	Not Available	564	Open in IMG/M
3300031879\|Ga0306919_11373930	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300031893\|Ga0318536_10338870	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300031910\|Ga0306923_12069998	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300031912\|Ga0306921_10993185	All Organisms → cellular organisms → Bacteria	947	Open in IMG/M
3300031912\|Ga0306921_12418287	All Organisms → cellular organisms → Bacteria → Proteobacteria	547	Open in IMG/M
3300031947\|Ga0310909_11531172	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300031954\|Ga0306926_10284091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2049	Open in IMG/M
3300032001\|Ga0306922_11745955	All Organisms → cellular organisms → Bacteria → Proteobacteria	614	Open in IMG/M
3300032060\|Ga0318505_10331565	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300032783\|Ga0335079_10592018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium silamurunense	1171	Open in IMG/M
3300032895\|Ga0335074_10191746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2508	Open in IMG/M
3300032895\|Ga0335074_10279537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. AR07	1930	Open in IMG/M
3300032895\|Ga0335074_10387402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1526	Open in IMG/M
3300032896\|Ga0335075_10327327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1688	Open in IMG/M
3300032896\|Ga0335075_10410045	All Organisms → cellular organisms → Bacteria	1435	Open in IMG/M
3300033134\|Ga0335073_10086639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	4078	Open in IMG/M
3300033134\|Ga0335073_10163018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2810	Open in IMG/M
3300033804\|Ga0314863_023016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. LNHC252B00	1256	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.81%
Host-Associated	Host-Associated	10.19%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.70%
Aquatic	Environmental → Aquatic	11.11%
Arthropoda	Host-Associated → Arthropoda	5.56%
Plants	Host-Associated → Plants	3.70%
Fungi	Host-Associated → Fungi	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.70%
Freshwater	Environmental → Aquatic → Freshwater	7.41%
Digestive System	Host-Associated → Arthropoda → Digestive System	5.56%
Sediment	Environmental → Aquatic → Sediment	3.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.70%
Mycelium	Host-Associated → Fungi → Mycelium	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.19%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.11%
Loam	Environmental → Terrestrial → Soil → Loam	7.41%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.48%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	5.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.70%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.93%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	37.04%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.30%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	11.11%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.48%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	5.56%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.63%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.70%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.85%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.93%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	20.37%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.19%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	7.41%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	5.56%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.63%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.63%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.70%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.78%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.85%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.93%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009826	Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010049	Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3	Host-Associated	Open in IMG/M
3300010162	Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)	Host-Associated	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012169	Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC074 MetaG	Host-Associated	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021358	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3	Host-Associated	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027576	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033804	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_0_20	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062387_1000212952	3300004091	Bog Forest Soil	MDRPGGNRQPDLLVRATNTLDPNRIAARIWTEVASLLKLLMAQHIAADVAPPRETVDE*
Ga0066395_105143192	3300004633	Tropical Forest Soil	MIDRLGGNRQPDLFVRTTNILDPKRIPARIQTELASLLKLLMAPHI
Ga0066388_1022937242	3300005332	Tropical Forest Soil	MIDRLGGNRQPDLFVRTTNILDPKRIPARIQTELASLLKLLMAPHIAADVAPPREAADE*
Ga0066388_1034291981	3300005332	Tropical Forest Soil	QPDLFVRTTNILDPNRIPARIQTEVVPLLKLLMALHIAADMAQRREAADE*
Ga0008090_101215862	3300005363	Tropical Rainforest Soil	MIDRLLGGNRQPDLFVRTTNILDPNRIPARIQTEVASLLKLLLALYVAADMAQRREAADE
Ga0066691_106575781	3300005586	Soil	RTMIDRLGGNRQPDLFVRTTNILDPKRIPARIQTELASLLKLLMAPHIAADVAPPREAADE*
Ga0066903_1020674691	3300005764	Tropical Forest Soil	MIDRSGGNRQPDLLVRATNTLDPNRIPTRILTEVASLLKLLMVRHIAADVAPPRETADE*
Ga0066903_1074848572	3300005764	Tropical Forest Soil	MIDPLGGNRQPDLFVRTTNILDPNRIPARIRTEVASLLKLLMAPHIAADMAQRREAADD*
Ga0070717_116600191	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MIDRLGGNRQPDLFLRTTNILDPKRIPARIQTELASLLKLLMASHISADVALPREAADE*
Ga0075023_1002004952	3300006041	Watersheds	MDRPGGNRQPDLLVRATNTPDPNRIAARILTEVASLLKLLMAQHIAADVAPPRETVDE*
Ga0075024_1006739451	3300006047	Watersheds	MIDRPGGNRQPDLFVRTTNILDPKRIPARIQTELASLLKLLMAPHIAADVA
Ga0075028_1000201653	3300006050	Watersheds	MDRPGGNRQPDLLVRATNTPDPNRIAARIWTEVASLLKLLMAQHIAADVAPPRETVDE*
Ga0070765_1020231671	3300006176	Soil	MIDRLGGNRQPDLFVRTTNILDPKRIPARIQTELASLLKLLMAPHIAADVAPPRE
Ga0126374_103382172	3300009792	Tropical Forest Soil	MIDRLGGNRQPDLFVRTTNILDPNRIPARIQTEVVSLLKLLMAVHIAADMARREAADE*
Ga0123355_102145583	3300009826	Termite Gut	MIDRPAGNRQPDLLVRATNTLDPSRIRAEIRREVASLLKQLMAQHIEVDVDLPHEAADE*
Ga0123355_104093722	3300009826	Termite Gut	MIDRPGGNRQPDLLVRTTNLLDPARIPTRIRTEVASLLKLLIALYIAADVAPPREAADE*
Ga0123355_106200133	3300009826	Termite Gut	MISRTGRDRQPDLLVRTTNMLDPNRIPVQIRAEVVSLLKSLMAHHVAPVVAASREVIDE*
Ga0123355_109297852	3300009826	Termite Gut	MINQPGSGRQPDLLVRTTNTLDPNRISEQIRTEVMSLLKLLIAQHIAADVAPPREVGDE*
Ga0126380_117951392	3300010043	Tropical Forest Soil	MIDRLGGNRQPDLFVRTTNILDPNQIPARIQTEVVPLLKLPMALHIAADMAQRREAADE*
Ga0126382_103791262	3300010047	Tropical Forest Soil	MMIDRLGGNRQPDLIVRATNTLNPNRIPAWIRTEVTSLLKLLMAQHIAADVPPPRETVDE
Ga0126382_107231862	3300010047	Tropical Forest Soil	MIDRLGGNCQPDLFVRTTNILDPKRIPARIQTELASLLKLLMARHIAADVALPREAADE*
Ga0126373_100821264	3300010048	Tropical Forest Soil	MIDRLGGNRQPDLFVRTTNILDPNRIPARIQTEVVPLLKLLMALHIAADMAQRREAADE*
Ga0126373_103619483	3300010048	Tropical Forest Soil	MIDRSGGNRQPDLLVRATNTLDPNRIPERIRTEVASLLKLLMVRHIAADVAPSRETADE*
Ga0123356_115723391	3300010049	Termite Gut	MIDRPIYHRQPDLLVRATNALDPNRMPAKLRTEVTTLLKLLMVQYIAADVTAPREAADE*
Ga0131853_111755691	3300010162	Termite Gut	MIDRPGGNRQPDLLVRATNTLDPNRIRAEIRTEVASLLKQLMAQHIEADVDLPHEAADE*
Ga0126370_105762321	3300010358	Tropical Forest Soil	MIDRLGGNQQPDLFARTTNILDPNRIPARIQTEVVSLLKLLMTVHIAADMARREAADE*
Ga0126370_108625702	3300010358	Tropical Forest Soil	MIDRLGGNRQPNLFVRTTNILDSKRIPARIQTELASLLKLLMAPHIAADVAPPREAADE*
Ga0126376_113295751	3300010359	Tropical Forest Soil	MIDRLGGNRQPDLFVRTTNILDPKRIPARIQTELASLLTVLMAPHIAADVAPPREAAD
Ga0126372_101164962	3300010360	Tropical Forest Soil	MIDRLGGNRQLDLFVRTTNILDPKRIPARIQTELASLLKLLMAPHIAADVAPPREAADE*
Ga0126378_110442732	3300010361	Tropical Forest Soil	MIDRLGGNRQPDLFVRTTNILDPKRIPARIQTELASLLKLLMAPHIAADVALPREAADE*
Ga0126378_118115672	3300010361	Tropical Forest Soil	MIDRSGGNRQPDLLVRATNTLDPNRIPARIRTEVASLLKLLMAQHIAADVAPPRETADE*
Ga0105239_117687742	3300010375	Corn Rhizosphere	MIDRPGGNRQPDLIARATNTLNSDRIPARIRTEVASLLKLLMAQHIAADVAPAREAVDE*
Ga0126381_1024998772	3300010376	Tropical Forest Soil	MIDRLGGNRQPDLFVRTTNILDPKRIPARIQTELASLLKLLMARHIAADVAPPREVADE*
Ga0126381_1051119361	3300010376	Tropical Forest Soil	MIDRLGGNRQPDLIVRATNALNPNRIPAWIRTEVASLLKLLMAQHIAADVAPPREPADE*
Ga0126383_107933472	3300010398	Tropical Forest Soil	MIDRLGGNRQPDLFVRTTNILDPKRIPARVQTELASLLKLLMAPHIAADVALPREAADE*
Ga0126383_109730922	3300010398	Tropical Forest Soil	MINRLGGNRQPDLFVRTTNTLEPKRIPAPIQKELASLLK
Ga0134121_108614801	3300010401	Terrestrial Soil	MIDRLGGNRQPDLFLRTTNILDPKRIPARIQTELASLLKLLMASHIS
Ga0153990_10123992	3300012169	Attine Ant Fungus Gardens	MIDRLGGNRQPDLFVRTTNILDPNRIPARIRTEVASLLKLLMAPHIAADMAQRREAADE*
Ga0126375_103208912	3300012948	Tropical Forest Soil	MIDRLGGNRQPDLFVRTTNILDPKRIPARIQTELASLLKLLMARHIAADVALPREAADE*
Ga0126369_109064192	3300012971	Tropical Forest Soil	MIDRSGGNRQPDLLVRATNTLDPNRIPARIRTEVASLLKLLMAQHIAADVAPPREAADE*
Ga0126369_122149122	3300012971	Tropical Forest Soil	MIDRLGGNRQPDLFVRTTNILDPKRIPARIQTELASLLKLLMAPHIAADVAPPREAGDE*
Ga0157378_127517291	3300013297	Miscanthus Rhizosphere	MIDRPGGNRQPDLIARATNTLNPDRIPARIRTEVASLLKLLMAQHIAADVAPAREAVDE*
Ga0182036_103228192	3300016270	Soil	MIDRPGVNRQPDLLVRATNTLDPNRIPERIRTEVASLLKLLMAQHIAADVAPPRETADE
Ga0182033_112404793	3300016319	Soil	MIDRSGGNRQPDLLVRATNTLDPNRIPERIRTEVASLLKLLMAQHIAADVAPPRETRDE
Ga0182035_100897412	3300016341	Soil	MIDPLGGNRQPDLFVRTTNILDPKRIPARIQTELASLLKLLMA
Ga0182037_101069432	3300016404	Soil	MIDRLGGNRQPDLLVRATNTLDPNRIPERIRTEVASLLKLLMAQHIAADVAPPRETADE
Ga0187812_12001312	3300017821	Freshwater Sediment	MIDRLGGNRQPDLFVRTTNILDPKRIPARIQTELASLLKLLMAPHIAADVAPPR
Ga0187802_100068912	3300017822	Freshwater Sediment	MIDRLGGNRQPDLFVRTTNILDPKRIPARIQTELASLLKLLMAPHIAADVALPREAADE
Ga0187807_12603861	3300017926	Freshwater Sediment	MIDRLGGNRQPDLFVRTTNILDPKRIPARIQTELASLLKLLMAPHIAADVAPPREPADE
Ga0187824_101221382	3300017927	Freshwater Sediment	MIDRLGGNRQPDLFVRTTNILDPKRIPARIQTELASLLKLLMAPHIAADVAPPREAADE
Ga0187783_100494614	3300017970	Tropical Peatland	MIDRLGGNRQPDLFVRTTNILDPKRIPARIQTELASLLKLLIAPHIAADVAPPREAADE
Ga0187822_102807571	3300017994	Freshwater Sediment	MIDRLGGNRQPDLFLRTTNILDPKRIPARIQTELASLLKLLMAPHIAADVAPPREAADE
Ga0187773_102443102	3300018064	Tropical Peatland	MIDRLGGNRQPDLFVRTTNILDPKRIPARIQTELGSLLKLLMALHIAADVAPPREAADE
Ga0187769_107556581	3300018086	Tropical Peatland	MIDRLGGNRQPDLFVRTTNILDPKRIPARIQTELASLLKLLMAPHIAGRRGAAARVRR
Ga0210404_102653622	3300021088	Soil	MIDRLGGNRQPDLFVRTTNILDPKRIPARIQTELASLLKLLMAPHIAADAAPPREAADE
Ga0210405_105172642	3300021171	Soil	MIDRPGGNRQPDLLVRTTNTLDPNRIPTQIRTEVASLLQLLMAQYIAADVAPRREAADE
Ga0213873_100531412	3300021358	Rhizosphere	MIGRPDGNRQPDLLVRATNTLDPNRIPAQIRAEVASLLKLLMAQHIAANVALPREADNE
Ga0210393_109698522	3300021401	Soil	MDRPGDNRQPDLLVRATNTLDPNRIAARIWTEVASLLKLLMAQHIAADVAPPRETIDE
Ga0210397_103163772	3300021403	Soil	MDRPGGNRQPDLLVRATNTIDPNRIAARIRTEVASLLKLLMAQHIAADVAPPREAGDE
Ga0210389_110951382	3300021404	Soil	MINRLGGNRQPDLFVRTTNTLDPKRIPAPIQKELASLLKLLMAQHIAADVAPPREAADE
Ga0210387_108601321	3300021405	Soil	MIDRPGGNRQPDLLMRTTNTFDPNRIPTRIRTEVASPLQLLMAQYIAADVAPRREAADE
Ga0210394_115382902	3300021420	Soil	MIDRPGGNRQPDLLVRTTNTLDPNRIPTRIRTEVASLLQQLMAQYIAADVAPRREAADE
Ga0210410_109975371	3300021479	Soil	MIDRPGGNRQPDLLVRTTNTLDPNRIPSRIRTEVASLLQQLMAQYIAADVAPRREAADE
Ga0210410_118250772	3300021479	Soil	IDRLGGNRQPDLFVRTTNILDPKRTPARIQTELASLLRLLMAPHIAADVAPPREAADE
Ga0126371_102930662	3300021560	Tropical Forest Soil	MIDRLGGNRQPDLFVRTTNILDPNRIPARIQTEVVPLLKLLMALHIAADMAQRREAADE
Ga0126371_106114542	3300021560	Tropical Forest Soil	MIDRPGGNRQPDLLVRATNRLDPNRLPEQIRTEVASLLKLLMAQHIAAAVVQPREAADE
Ga0126371_134523611	3300021560	Tropical Forest Soil	MIDRSGGNRQPDLLVRATNTLDPNRIPTRILTEVASLLKLLMVRHIAADVAPSRETADE
Ga0213853_112813911	3300021861	Watersheds	MIDQLGGNRQPDLFVRTTNILDPKRIPARIQTELASLLKLLMAPHIAADVAPPREAADE
Ga0207710_101002782	3300025900	Switchgrass Rhizosphere	MIDRLGGNRQPDLFLRTTNILDPKRIPARIQTELASLLKLLMASHISADVALPREAADE
Ga0209003_10179782	3300027576	Forest Soil	MIDRLGGNRQPDLFVRTTNILDPNRIPARIRTEVASLLKLLMAPHIAADMAQRREAADE
Ga0209448_100199402	3300027783	Bog Forest Soil	MDRPGGNRQPDLLVRATNTLDPNRIAARIWTEVASLLKLLMAQHIAADVAPPRETVDE
Ga0209583_100299722	3300027910	Watersheds	MDRPGGNRQPDLLVRATNTPDPNRIAARILTEVASLLKLLMAQHIAADVAPPRETVDE
Ga0318534_102040272	3300031544	Soil	MIDRSGGNRQPDLLVRATNTLDPKRIPERIRTEVASLLKLLMAQHIAADVAPPRETADE
Ga0318541_100292872	3300031545	Soil	MIDRSGGNRQPDLLVRATNTLDPNRIPERIRTEVASLLKLLMAQHIAADVAPPRETADE
Ga0318541_104211862	3300031545	Soil	MIDRLGGNRQPDLFVRTTNILDPKRIPARIQTELASLLKLLMAPHIAADVAPLREAGDE
Ga0318515_107356912	3300031572	Soil	RSGGNRQPDLLVRATNTLDPKRIPERIRTEVASLLKLLMAQHIAADVAPPRETADE
Ga0318500_105545163	3300031724	Soil	MIDRSGGNRQPDLLVRATNTLDPNRIPERIRTEVASLLKLLMAQHIAAD
Ga0307477_104653482	3300031753	Hardwood Forest Soil	MIDRLGGNRQPDLFVRTTNILDPKRILARIQTELASLLKLLMAPHIAADVAPPREAADE
Ga0318537_103658352	3300031763	Soil	MIDRSGGNRQPDLLVRATNTLDPNRIPERIRTEVASLLKLLM
Ga0318526_100293541	3300031769	Soil	MIDRLGGNRQPDLFVRTTNILDPKRIPARIQTELASLLKLLMAPHIAADVAQPREAGDE
Ga0318521_102504052	3300031770	Soil	MIDRLGGNRQPDLFVRTTSILDPKRIPARIQTELASLLKLLMAPHIAADVAPPREAADE
Ga0318547_105543531	3300031781	Soil	PDLFVRTTNILDPKRIPARIQTELASLLKLLMAPHIAADVAPLREAGDE
Ga0318552_103571552	3300031782	Soil	MIDRSGGNRQPDLLVRATNTLDPNRIPERIRTEVASLLKLLMAQHIAADAAPPRETADE
Ga0318548_105419182	3300031793	Soil	LGDNRQPDLFVRTANILDPKRIPGRIQTELASLLKLLMAPHIAADVAPPREAADE
Ga0318557_100345732	3300031795	Soil	MIDRSGGNRQPDLLVRATNTLDPNRIPARIRTEVASLLKLLMAQHIAADVAPPRETADE
Ga0318550_100288341	3300031797	Soil	MIDRSGGNRQPDLLVRATNTLDPNRIPERIRTEVASLLKLLMA
Ga0318565_100554972	3300031799	Soil	MIDRLGGNRQPDLFVRTTNILDPKRIPARIQTELASLLKLLMAPHIAADVAPPREA
Ga0318565_103776471	3300031799	Soil	MIDRLGGNRQPDLFVRTTNILDPNRIPARIRTEVASLLKLLMAPHIAADMAQRREAADD
Ga0318499_100184331	3300031832	Soil	MIDRLGGNRQPDLFVRTTNILDPKRIPGRIQTELASLLKLLMAPHIAADVAPPREAADE
Ga0306919_112446672	3300031879	Soil	MIDRLGGNRQPDLFVRTTNILDPKRIPARIQTELASLLKLLMAPHIAADVAP
Ga0306919_113739302	3300031879	Soil	PDLFVRTTNILDPKRIPARIQTELASLLKLLMAPHIAADVAPPREAGDE
Ga0318536_103388702	3300031893	Soil	MIDRLGDNRQPDLFVRTTNILDPKRIPGRIQTELASLLKLLMAPHIAADVAPPREAADE
Ga0306923_120699981	3300031910	Soil	MIDPLGGNRQPDLFVRTTNILDPNRIPARIRTEVASLLKLLMAPHIAADMAQRREAADD
Ga0306921_109931852	3300031912	Soil	MIDPLGGNRQPDLFVRTTNILDLNRIPARIRTEVASLLKLLMAPHIAADMAQRREAADD
Ga0306921_124182871	3300031912	Soil	MIDRLGGNRQPDLFVRTTNILDPNRIPARIQTEVASLLKLLMAPHIAADMAQRREAADE
Ga0310909_115311722	3300031947	Soil	MIDRPGVNRQPDLLVRTTNTLDLNRIPAQIRAEVASLLKLLIAQHIAADVAPPREAADE
Ga0306926_102840911	3300031954	Soil	MIDRPGVNRQPDLLVRTTNTLDLNRIPAQIRAEVASLLKLLIAQHIAAVKRHPELTP
Ga0306922_117459552	3300032001	Soil	MIDRLGDNRQPDLFVRTTNILDPKRIPGRIQTELASLLKLLMAPHIAADVAPPREAGDE
Ga0318505_103315651	3300032060	Soil	MIDRLGGNRQPDLFVRTTNILDPKRIPARIQTELASLLKLLLAPHIAADVAPPREAGDE
Ga0335079_105920182	3300032783	Soil	MMIDRLAGNRQPDLFVRTTNILDPKRIPARIQTELASLLKLLMAPHIAADVAPPREAADE
Ga0335074_101917463	3300032895	Soil	MIDRPGGNRQPDLLVRTANTLDPNRIPTRIRAEVASLLKLLLAQHIAADVAPPREVADE
Ga0335074_102795372	3300032895	Soil	MVDRPGVNRQPDLLVRATNTLDLNRIPAQIRAEVASLLKLLIAQHIAADVAPPREAADE
Ga0335074_103874022	3300032895	Soil	MIDRPGGNRQPDLLVRTANTLNSNRIPTRIRAEAASLLKLLIAQHIAADVAPPREVVDEQIYL
Ga0335075_103273271	3300032896	Soil	NRQPDLLVRTANTLDPNRISTRIRAEVASLLKLLLAQHIAADVAPPREVADE
Ga0335075_104100453	3300032896	Soil	MVDRPGVNRQPDLLVRATNTLDLNRIPAQIRAEVASLLKLLIAQH
Ga0335073_100866394	3300033134	Soil	MVDRPGVNRQPDLLVRATNTLDLNRIPAQIRAEVASLLKLLIAQHIVADVAPPREAADE
Ga0335073_101630181	3300033134	Soil	MIDRPGGNHQPDLLVRTTNILDLTRIPAQIRAEVASLLKLLMAQHIVADVAPLCETADE
Ga0314863_023016_764_943	3300033804	Peatland	MIDRLGDNRQPDLFVRTTNILDPKRIPARIQTELTSLLKLLMAPHIAANVAPPREAADE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090635

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences