Metagenome / Metatranscriptome Family F090633

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090633
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	57 residues
Representative Sequence	MLSNWRDPPRPVEKLAEQGSRITGDTGKSVDGERDSAGSVVARKRSNVRGAKRPCCL
Number of Associated Samples	100
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	7.41 %
% of genes near scaffold ends (potentially truncated)	91.67 %
% of genes from short scaffolds (< 2000 bps)	92.59 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.15

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (68.519 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (11.111 % of family members)
Environment Ontology (ENVO)	Unclassified (18.519 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.704 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.15
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.15
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00078	RVT_1	22.22
PF08388	GIIM	9.26
PF13356	Arm-DNA-bind_3	0.93
PF13411	MerR_1	0.93
PF13565	HTH_32	0.93
PF13561	adh_short_C2	0.93
PF03551	PadR	0.93
PF13610	DDE_Tnp_IS240	0.93
PF13578	Methyltransf_24	0.93
PF13683	rve_3	0.93
PF04616	Glyco_hydro_43	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.93
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.93
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.52 %
Unclassified	root	N/A	31.48 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.52 %
Unclassified	root	N/A	31.48 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.52 %
Unclassified	root	N/A	31.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.48 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	17.59 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	13.89 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.48 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	12.96 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	11.11 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.85 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.85 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.48 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	12.04 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	11.11 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.85 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.85 %
Neisseriales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales	0.93 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.48 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	11.11 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	7.41 %
unclassified Burkholderiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales	3.70 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.85 %
Chromobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae	0.93 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.93 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.48 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	9.26 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	7.41 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	3.70 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.85 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.93 %
Chromobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Chromobacterium group	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.48 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	9.26 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	7.41 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	3.70 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.85 %
Chromobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Chromobacterium group → Chromobacterium	0.93 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.48 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	9.26 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	7.41 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	3.70 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.85 %
Chromobacterium haemolyticum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Chromobacterium group → Chromobacterium → Chromobacterium haemolyticum	0.93 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908044\|A5_c1_ConsensusfromContig86054	Not Available	843	Open in IMG/M
2170459003\|FZN2CUW02IDP5H	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
2170459013\|GO6OHWN01ECFLR	Not Available	506	Open in IMG/M
2170459023\|GZGNO2B01CGEH6	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300001305\|C688J14111_10028152	All Organisms → cellular organisms → Bacteria	1671	Open in IMG/M
3300001535\|A3PFW1_10026313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2577	Open in IMG/M
3300001593\|JGI12635J15846_10424135	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300001686\|C688J18823_10347358	All Organisms → cellular organisms → Bacteria	967	Open in IMG/M
3300003224\|JGI26344J46810_1014037	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300003505\|JGIcombinedJ51221_10207841	Not Available	794	Open in IMG/M
3300004081\|Ga0063454_100216369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1108	Open in IMG/M
3300004472\|Ga0068974_1325196	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300005181\|Ga0066678_10911117	Not Available	575	Open in IMG/M
3300005186\|Ga0066676_10824474	Not Available	627	Open in IMG/M
3300005187\|Ga0066675_10172851	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1499	Open in IMG/M
3300005187\|Ga0066675_11266941	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300005332\|Ga0066388_103169425	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300005518\|Ga0070699_101054062	Not Available	746	Open in IMG/M
3300005518\|Ga0070699_101899829	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300005541\|Ga0070733_11193167	Not Available	510	Open in IMG/M
3300005577\|Ga0068857_102172836	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300005712\|Ga0070764_10687317	Not Available	629	Open in IMG/M
3300006046\|Ga0066652_101334912	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	675	Open in IMG/M
3300006176\|Ga0070765_102310943	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300006642\|Ga0075521_10195916	Not Available	957	Open in IMG/M
3300006796\|Ga0066665_11026812	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300006797\|Ga0066659_11110889	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	661	Open in IMG/M
3300006949\|Ga0075528_10070714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	906	Open in IMG/M
3300006950\|Ga0075524_10153899	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	996	Open in IMG/M
3300009093\|Ga0105240_11866877	Not Available	625	Open in IMG/M
3300009098\|Ga0105245_13217956	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300009102\|Ga0114948_11718588	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	500	Open in IMG/M
3300009525\|Ga0116220_10584550	Not Available	512	Open in IMG/M
3300009623\|Ga0116133_1105872	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300009633\|Ga0116129_1089052	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300009643\|Ga0116110_1281416	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300010146\|Ga0126320_1547208	Not Available	513	Open in IMG/M
3300010159\|Ga0099796_10111951	All Organisms → cellular organisms → Bacteria → Proteobacteria	1040	Open in IMG/M
3300010320\|Ga0134109_10379267	Not Available	561	Open in IMG/M
3300010343\|Ga0074044_10076458	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2264	Open in IMG/M
3300010366\|Ga0126379_11205236	All Organisms → cellular organisms → Bacteria → Proteobacteria	863	Open in IMG/M
3300010366\|Ga0126379_13170945	Not Available	550	Open in IMG/M
3300010379\|Ga0136449_101175556	All Organisms → cellular organisms → Bacteria	1211	Open in IMG/M
3300012200\|Ga0137382_10258549	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1208	Open in IMG/M
3300012211\|Ga0137377_10102456	Not Available	2713	Open in IMG/M
3300012212\|Ga0150985_116391757	Not Available	503	Open in IMG/M
3300012361\|Ga0137360_10367128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1208	Open in IMG/M
3300012362\|Ga0137361_10085799	Not Available	2702	Open in IMG/M
3300012363\|Ga0137390_11876719	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300014491\|Ga0182014_10085293	All Organisms → cellular organisms → Bacteria	1960	Open in IMG/M
3300014491\|Ga0182014_10112108	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1614	Open in IMG/M
3300014491\|Ga0182014_10458160	Not Available	629	Open in IMG/M
3300014498\|Ga0182019_10145515	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1497	Open in IMG/M
3300018003\|Ga0187876_1299136	Not Available	513	Open in IMG/M
3300018007\|Ga0187805_10517817	Not Available	560	Open in IMG/M
3300018016\|Ga0187880_1004529	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10206	Open in IMG/M
3300018042\|Ga0187871_10657159	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300018044\|Ga0187890_10162064	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1278	Open in IMG/M
3300018057\|Ga0187858_10709779	Not Available	600	Open in IMG/M
3300019258\|Ga0181504_1206514	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300019788\|Ga0182028_1402012	All Organisms → cellular organisms → Bacteria	1795	Open in IMG/M
3300020004\|Ga0193755_1220679	Not Available	528	Open in IMG/M
3300021168\|Ga0210406_10769357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	735	Open in IMG/M
3300021171\|Ga0210405_10393755	Not Available	1091	Open in IMG/M
3300021407\|Ga0210383_10446318	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1117	Open in IMG/M
3300021478\|Ga0210402_11311546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	651	Open in IMG/M
3300021479\|Ga0210410_10156977	All Organisms → cellular organisms → Bacteria → Acidobacteria	2029	Open in IMG/M
3300021560\|Ga0126371_11676410	Not Available	760	Open in IMG/M
3300022527\|Ga0242664_1148072	Not Available	517	Open in IMG/M
3300022849\|Ga0224531_1053735	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300023247\|Ga0224529_1005949	All Organisms → cellular organisms → Bacteria	3894	Open in IMG/M
3300025504\|Ga0208356_1111679	Not Available	514	Open in IMG/M
3300025829\|Ga0209484_10054803	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	874	Open in IMG/M
3300025944\|Ga0207661_10796494	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	870	Open in IMG/M
3300025944\|Ga0207661_11450757	Not Available	629	Open in IMG/M
3300026371\|Ga0257179_1006337	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1135	Open in IMG/M
3300026474\|Ga0247846_1095657	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300027266\|Ga0209215_1021608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	834	Open in IMG/M
3300027371\|Ga0209418_1004013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1999	Open in IMG/M
3300027575\|Ga0209525_1111170	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300027681\|Ga0208991_1088696	All Organisms → cellular organisms → Bacteria	929	Open in IMG/M
3300027915\|Ga0209069_10716313	Not Available	589	Open in IMG/M
3300028800\|Ga0265338_10289368	All Organisms → cellular organisms → Bacteria	1194	Open in IMG/M
3300028873\|Ga0302197_10468646	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300028909\|Ga0302200_10496067	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300029911\|Ga0311361_10447052	Not Available	1323	Open in IMG/M
3300029919\|Ga0302141_1193203	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300029956\|Ga0302150_10133397	All Organisms → cellular organisms → Bacteria	949	Open in IMG/M
3300030011\|Ga0302270_10258376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Chromobacterium group → Chromobacterium → Chromobacterium haemolyticum	976	Open in IMG/M
3300030294\|Ga0311349_11886142	Not Available	551	Open in IMG/M
3300030712\|Ga0307921_1022994	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300030946\|Ga0075379_11491788	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300031011\|Ga0265774_104624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	581	Open in IMG/M
3300031234\|Ga0302325_10189199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3573	Open in IMG/M
3300031258\|Ga0302318_10682385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	517	Open in IMG/M
3300031469\|Ga0170819_15395435	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300031474\|Ga0170818_102204378	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300031524\|Ga0302320_10769017	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1074	Open in IMG/M
3300031715\|Ga0307476_10685080	Not Available	759	Open in IMG/M
3300031726\|Ga0302321_103608254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	503	Open in IMG/M
3300031821\|Ga0318567_10701126	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300031821\|Ga0318567_10839556	Not Available	520	Open in IMG/M
3300031823\|Ga0307478_10939699	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300031902\|Ga0302322_100919830	Not Available	1050	Open in IMG/M
3300031902\|Ga0302322_101238082	Not Available	906	Open in IMG/M
3300031941\|Ga0310912_10729586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	767	Open in IMG/M
3300032059\|Ga0318533_10527791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	865	Open in IMG/M
3300034643\|Ga0370545_011340	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1354	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.37%
Host-Associated	Host-Associated	4.63%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.41%
Aquatic	Environmental → Aquatic	12.96%
Plants	Host-Associated → Plants	4.63%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.59%
Peat	Environmental → Terrestrial → Peat	14.81%
Freshwater	Environmental → Aquatic → Freshwater	11.11%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.78%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.85%
Marine	Environmental → Aquatic → Marine	0.93%
Sediment	Environmental → Aquatic → Sediment	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.30%
Loam	Environmental → Terrestrial → Soil → Loam	14.81%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	14.81%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.19%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.85%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.93%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Clay	Environmental → Terrestrial → Soil → Clay	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.81%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	14.81%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.33%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.33%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.48%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	6.48%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.70%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.78%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.85%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.93%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.93%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.11%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	7.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.48%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.56%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.56%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.56%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	4.63%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	3.70%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.78%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.78%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	2.78%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.78%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	2.78%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.85%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	1.85%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.85%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.85%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.93%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.93%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.93%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	0.93%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.93%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.93%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.93%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.93%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.93%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908044	Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5	Environmental	Open in IMG/M
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459013	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis soil at the rocks surface 0-21cm	Environmental	Open in IMG/M
2170459023	Grass soil microbial communities from Rothamsted Park, UK - FA3 (control condition)	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001535	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-PF-15A)- 1 week illumina	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300003224	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004472	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 71 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006949	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-16B	Environmental	Open in IMG/M
3300006950	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009102	Deep subsurface microbial communities from Mariana Trench to uncover new lineages of life (NeLLi) - CR04 metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009633	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10	Environmental	Open in IMG/M
3300009643	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40	Environmental	Open in IMG/M
3300010146	Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300018003	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300019258	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019788	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022527	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022849	Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T100	Environmental	Open in IMG/M
3300023247	Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T50	Environmental	Open in IMG/M
3300025504	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025829	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-16B (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026371	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-B	Environmental	Open in IMG/M
3300026474	Peat soil microbial communities from Stordalen Mire, Sweden - P.F.S.T0	Environmental	Open in IMG/M
3300027266	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027575	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028873	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_1	Environmental	Open in IMG/M
3300028909	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_1	Environmental	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029919	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_2	Environmental	Open in IMG/M
3300029956	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_2	Environmental	Open in IMG/M
3300030011	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E2_3	Environmental	Open in IMG/M
3300030294	II_Fen_E3 coassembly	Environmental	Open in IMG/M
3300030712	Metatranscriptome of soil microbial communities from Risofladan, Vaasa, Finland - OX-3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030946	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA7 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031011	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031258	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_1	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300034643	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A5_c1_00903790	2124908044	Soil	WRSPPRPSEKSLEKVRPITGDTGKRKDGERVAEGPVVAGKRSNVRGAKRPCCL
E4A_11064320	2170459003	Grass Soil	MLSNWRNPPRPAEKSAEQGSRITGSTGKSVDGERESAGSVVTRKRSNVRGAKRPCCFVMALTKREARAK
N57_02295030	2170459013	Grass Soil	MLSNWRSPPRPVEKSAEQGSRITGDPGKSVDGERDSAGSVVAMKRSNVRG
FA3_12113300	2170459023	Grass Soil	PVAKSAEQGSRITGDTGKSVEGERDSAGSVVARKRSNVCGAKRPCCL
C688J14111_100281521	3300001305	Soil	GETLLVPLEKSAEQGNLITGNTGKSVEGERVTAGSGVVMNRGNARGAKGPCCL*
A3PFW1_100263135	3300001535	Permafrost	GDKVMLSNWRNPPRPVAKSAEQGSRITGDTGKSVDGERDSAGSVVVRKRSNVRGAKRPCCL*
JGI12635J15846_104241352	3300001593	Forest Soil	MLSNWRNPPRPVEKLAEQGNRITGNTGKSVDGERDSAGSVVARKRSNARGAKRPCCL*
C688J18823_103473583	3300001686	Soil	LTDAARSFGGVVGAAGDKGTLSNWRNPPRPVEKSAEQGNLITGNTGKWVEGERVTAGSGVVMNRGNARGAKGPCCL*
JGI26344J46810_10140372	3300003224	Bog Forest Soil	RPVAKSAEQGSRITGDPGKSVEGERDSAGSVVARKRSNVCGAKRPCCL*
JGIcombinedJ51221_102078412	3300003505	Forest Soil	NWRSPPRPVAKSAEQGRRITGDTGKSAEDERVSVGLVVARKRGNARGAKESCCL*
Ga0063454_1002163692	3300004081	Soil	MLSNWRNPPRPVEKLAEQGNRITGNTGKSVDGERDSAGPVVARKRGNVRGAKRPCCLYGSNKKGGKGE*
Ga0068974_13251962	3300004472	Peatlands Soil	PVEKSAEQGSRITGDTGKSADGERDSAGSVVARKRSNFRRAKRPCCL*
Ga0066678_109111172	3300005181	Soil	PVAKSAEQGSRITGDTGKSVDGERDSAGSTVARNRSNVRGAKGPCCL*
Ga0066676_108244741	3300005186	Soil	MLSNWRNPPRPVEKSAEQGNRITGNTGKSVDGERDSAGSVVARKRSNVRGAK
Ga0066675_101728512	3300005187	Soil	QHGDKDMLSNWRNPPRPVEKSAEQGSCITGNTGKLADGEREAAGSVVAMKRGNVRGAKRPCCL*
Ga0066675_112669411	3300005187	Soil	HGDKVMLSNWRSPPRPAEKSAEQGSRITGDPGKSVDGERDSAGSVVAMKRSNVRGAKRPCCL*
Ga0066388_1031694251	3300005332	Tropical Forest Soil	VLSNWRGPSRPIEKSAEQVGGITGITGKAADGERESEGSAVALKRSNVRGVKGPCCV*
Ga0070699_1010540622	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	SNWRDPPRPDAKAAEQGSHITEDTGKVAEDERESEGSIGAMKRSNVRGAKGPCWFAIAPTKWEARVR*
Ga0070699_1018998292	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	HGDKVMLSNWRNPPRPVEKSAEQGNRITGNTGKSVDGERDSAGSVVAKKRSNARGAKRPCCL*
Ga0070733_111931671	3300005541	Surface Soil	MLSNWRNPPRPVEKSAEQGNRITGDTGKSVDDERDSAGSVVAGKRSNIRGAK
Ga0068857_1021728361	3300005577	Corn Rhizosphere	TLLVPLEKSAEQGNLITGNTGKSVEGERVTAGSGVVMNRGNARGAKGPCCL*
Ga0070764_106873172	3300005712	Soil	MLSNWRNPPRPVEKSAEQGSRITGDTGKSVEGERESAGSVVVRKWSNVCGAKRPCCLYGSNKTGGKGEMT
Ga0066652_1013349121	3300006046	Soil	HGDKVMLSNWRNPPRPVEKSAEQGNRITGNTGKSVDGERDSAGSVVARKRSKAGTEISCRRLDMP*
Ga0070765_1023109432	3300006176	Soil	SNWRNPPRPVEKSAEQGNRITGDTGKSVDDERDSAGSVVARKRSNVRGAKRPCCL*
Ga0075521_101959161	3300006642	Arctic Peat Soil	SNWRNPPRPVEKSAEQGSRITGDTGKSVDGERDSAGSVVVRKRSNVRGAKRPCCL*
Ga0066665_110268121	3300006796	Soil	HGDKVMLSNWRNPPRPVEKSAEQGSRITGNTGKSVDGERDSAGSVVARKRSNVRGAKRPCCL*
Ga0066659_111108891	3300006797	Soil	KDALSNWRNPPRPAAKSAEQGSRITGDPRKSVEDERVSEGLVVAVKRSNVRGAKEPCCL*
Ga0075528_100707142	3300006949	Arctic Peat Soil	LAGWKRQHDGKDALSNWRSPPRPVAKSAEQASRITGTTGKSVEDEKASEGLIVAEKRSNVRGAKEPCCL*
Ga0075524_101538992	3300006950	Arctic Peat Soil	PRPVEKSAEQGSRITGDTGKSVDGERDSAGSVVAMKRSNVRGAKRPCCL*
Ga0105240_118668771	3300009093	Corn Rhizosphere	MLSNWRNPPRPVEKSAEQGSRITGNTGKSVEGERESAGSVVARKRSNARRAKRPC
Ga0105245_132179562	3300009098	Miscanthus Rhizosphere	DKVMLSNWRNPPRPVEKSAEQGSRITGNTGKSVDDERDSAGSVVAGKRSNVRGAKRPCCLYRLQQYGRQG*
Ga0114948_117185881	3300009102	Deep Subsurface	MLSNWRNPPRPVEKSAEQGSRITGEPRKSVEGERVAARSVVARKRGNA
Ga0116220_105845501	3300009525	Peatlands Soil	VMPSNWRDPPRPGAKSPEQGSRITGDTGKSADGERGSAGFVLARKRSNV
Ga0116133_11058721	3300009623	Peatland	KVMLSNWRNPPRPVAKSAEQGNRITGDTGKSVDDERDSAGSVVAGKRSNIRGAKRPCCL*
Ga0116129_10890521	3300009633	Peatland	KVMLSNWRNPPRPVEKSAEQGNRITGDTGKSVDGKRDSAGSVVARKRSNVRGAKGPCCL*
Ga0116110_12814162	3300009643	Peatland	RPDEKSPEQGSRITGDTGKSAKGERGSAGFVIARKRSNVRGAKEPCCL*
Ga0126320_15472081	3300010146	Soil	MLSNWRNPPRPVEKLAEQGNRITGNTGKSVDGERDSAGSIVARKQSNVCGAKRPCCL
Ga0099796_101119511	3300010159	Vadose Zone Soil	MLSNWRNPPRPVEKSAEQGNRITGDTGKSVDDERDSAGSVVARKRSNVRGA
Ga0134109_103792671	3300010320	Grasslands Soil	MLSNWRNPPRPVEKSAEQGSCITGNTGKLADGEREAAGSVVAMKRGNVRGAK
Ga0074044_100764582	3300010343	Bog Forest Soil	SNWRNPPRPVEKSTEQGNRITGNTGKAVDGERDSAGSVVARKRSNVRGAKRPCCL*
Ga0126379_112052361	3300010366	Tropical Forest Soil	SNWRSPPRPSEKSLEQVPSITGITGKWVEGERVTAGSGVVMNRGNARGAKGPCCL*
Ga0126379_131709452	3300010366	Tropical Forest Soil	MLSNWRNPPRPVEKSAEQGSHITGKTGKLVDGERVSAGPIVAVKRVTTVERRD
Ga0136449_1011755562	3300010379	Peatlands Soil	MLRNWRNPPRPVAKSAEQGNRITGDTGKSVDDERDSAGSVVAGKRSNIRGAKRPCCL*
Ga0137382_102585491	3300012200	Vadose Zone Soil	GQHGDKVMLSNWRNPPRPVEKSAEQGSRITGDTGKSVEGERDSAGSVVARKRSNVRGAKRPCCL*
Ga0137377_101024561	3300012211	Vadose Zone Soil	RYGDKGALSNWRNPPRPVAKSMEQGSRITGNTGKSVDGERASAGSVVAMNRCNDRGAKGPCCL*
Ga0150985_1163917571	3300012212	Avena Fatua Rhizosphere	MLSNWRSPPRPVEKSAEQGSRITGDPGKSVEGERDSAGSVVARKRSNVR
Ga0137360_103671282	3300012361	Vadose Zone Soil	MLSNWRSPPRPVAKAAEQGSRITGNTGKSVEDERVTEGLVVAAMRSNVRGAKEPYWW*
Ga0137361_100857993	3300012362	Vadose Zone Soil	LSNWRNPPRPVAKSAEQGSRITGNTGKSVDGERASAGSVVAMNRYNDRGAKGPCCL*
Ga0137390_118767192	3300012363	Vadose Zone Soil	GDKVMLSNWRSPPRPVEKSAEQGSRITGNTGKSVDGERDSAGSVVAMNRSNVRGAKGPCCL*
Ga0182014_100852931	3300014491	Bog	GDKVMLSNWRSPPRPVEKSAEQGSRITGDPGKSVDGERDSAGSVVARKRSNVRRAKRPCCL*
Ga0182014_101121082	3300014491	Bog	GDKVMLSNWRSPPRPVEKSAEQGSRITGDPGKSVDGERDSAGSVVARKRSNVRGAKRPCCL*
Ga0182014_104581601	3300014491	Bog	MQSNWRSPPHPVEKSAEQGSRITGHTGKSAEDERVAAGFVVARKPGNAGGAKGPCCL
Ga0182019_101455151	3300014498	Fen	PPRPVEKSAEQGSRITGDTGKSVDGERDSAGSVVARKRSNVRGAKRPCCL*
Ga0187876_12991361	3300018003	Peatland	VGKDALSNWRNPPRPDEKSAEQGSRITGATGKSVDGERVSEGHIVAKKRSNV
Ga0187805_105178171	3300018007	Freshwater Sediment	MLSNWRNPPRPVAKSAEQGNRITGDTGKSVDDERDSAGSVVAGKRSNIRGAKRPCCL
Ga0187880_10045291	3300018016	Peatland	MLSNWRNPPRPVEKSTEQGSRITGDTGKSVDGERDSAGYVVARKRSNVRGAK
Ga0187871_106571591	3300018042	Peatland	QHGGKDALSNWRNPPRPDEKSAEQGSRITGATRKSVDGERVSEGHIVAKKRSNVRGAKEPCCL
Ga0187890_101620641	3300018044	Peatland	RPVAKSAEQGNRITGDTGKSVDDERDSAGSVVAGKRSNIGGAKRPSCW
Ga0187858_107097791	3300018057	Peatland	MLSDWRNPPRPVEKLAEQGSPITGNTGKWVDGERDSAGFVVAMKRSNVRGAKRPCCL
Ga0181504_12065142	3300019258	Peatland	GQHGDKVMPSNWRSPPRPGAKSPEQGSRITGDTGKSVDGERDSAGSVVARKRSNVRGAKRPCCL
Ga0182028_14020123	3300019788	Fen	MLSNWRDPPRPVEKLAEQGSRITGDTGKSVDGERDSAGSVVARKRSNVRGAKRPCCL
Ga0193755_12206791	3300020004	Soil	MLSNWRNPPRPVEKSAEQGSRITGDTGKSVEGERDSAGPVVARKRSNV
Ga0210406_107693572	3300021168	Soil	RPVEKAAEQGSRITGDPGKSVDGERDSAGSVVARKRSNVRGAKRPCCL
Ga0210405_103937551	3300021171	Soil	MLSNWRNPPRPGEKSAEQGSRITGDPGKSVDGERDSAGSVVAMKRSNVRGAKRP
Ga0210383_104463182	3300021407	Soil	PVEKSPEQGSRITGDPGKSVEGERDAAGSVVARKRSNVRGAKRPCCL
Ga0210402_113115462	3300021478	Soil	MLSNWRNPPRPVEKSAEQGNRITGNTGKSVDGERDSAGSVVARKRSNARGAKRPCC
Ga0210410_101569771	3300021479	Soil	MLSNWRSPPRPVEKSAEQGSRITGDPGKSVDGERDSAGSVVAMKRSNVRGAKRPCFL
Ga0126371_116764102	3300021560	Tropical Forest Soil	WRNPPRPDEKSAEQGNRITGNTGKSVDGERDSAGSVVAKKRSNVRGSKRPCCL
Ga0242664_11480721	3300022527	Soil	MLSNWRSPPRPVEKSAEQGSRITGDTGKSVEGERESAGPVLVRKRSNVRGAK
Ga0224531_10537352	3300022849	Soil	DKVMLSNWRNPPRPVEKSAEQGSRITGDTGKSVDGERDSAGSVVAKKRSNVRRAKRPCCL
Ga0224529_10059491	3300023247	Soil	MLSNWRNPPRPVEKSAEQGSRITGDTGKSVDGERDSAGSVVAKKRSNARRAKRP
Ga0208356_11116791	3300025504	Arctic Peat Soil	MLSNWRNPPRPVAKSAEQGSRITGDPGKSVEGERDSAGSVVARKRSNVRGAKR
Ga0209484_100548032	3300025829	Arctic Peat Soil	LAGWKRQHDGKDALSNWRSPPRPVAKSAEQASRITGTTGKSVEDEKASEGLIVAEKRSNVRGAKEPCCL
Ga0207661_107964942	3300025944	Corn Rhizosphere	MLSNWKNPPRPVEKSAEQGNRITGNTGKSVVGERESAGSVVARKRSNARGVKKP
Ga0207661_114507571	3300025944	Corn Rhizosphere	MLSNWRNPPRPVEKSAEQGSRITGNTGKSVEGERESAGSVVARKRSNARRAKR
Ga0257179_10063371	3300026371	Soil	HGDKVMLSNWRSPPRPVEKSAEQGSRITGDPGKSVEGERDSAGSVVARKRSNVRGAKRPCCL
Ga0247846_10956571	3300026474	Soil	NWRNPPRPVAKSAEQGSRITGDTGKSVDGERDSAGSVVARKRSNVRGAKRPCCL
Ga0209215_10216081	3300027266	Forest Soil	MLSNWRNPPRPVEKSAEQGNRITGNTGKSVDGERDSAGSVLVRKRSNVRGAKRPCCVRWLHQNGRQGYMRKAPISLQDLR
Ga0209418_10040131	3300027371	Forest Soil	GWHGDKGTLSNWRNPPRPVEKSAEQGNLITGNTGKSVEGERVTAGSGVVMNQGNARGAKGPCCL
Ga0209525_11111701	3300027575	Forest Soil	MLSNWRSPPRPVAKSTEQGSRITGDPGKSVDGERDSAGSVVARKRSNVR
Ga0208991_10886961	3300027681	Forest Soil	MLSNWRNPPRPVEKSAEQGSHITGDPGKLAEDERVAEGFIVAAKRSNVRGAKEPCCL
Ga0209069_107163132	3300027915	Watersheds	MLSNWRNPPRPVEKSAEQGSRITGNTGKSVDDERDSAGSVVARKRSNVRGAKRPC
Ga0265338_102893681	3300028800	Rhizosphere	DELGLSNWRSPPRPVAKSAEQASRITGTTGKSVEDEKASEGLIVAEKRSNVRGAKEPCCL
Ga0302197_104686461	3300028873	Bog	GDKVMLSNWRSPPRPVEKSAEQGSRITGDTGKSADGERDSAGSVVARKRSNARRAKRPCC
Ga0302200_104960672	3300028909	Bog	RPVAKSAEQGSRITGDTGKSVDDERDSAGSVVVRKRSNVRRAKRPCCL
Ga0311361_104470521	3300029911	Bog	PVEKSAEQGSRITGDTGKSADGERDSAGSVVARKRSNARRAKRPCCL
Ga0302141_11932031	3300029919	Bog	CPVAKSAEQGSRITGDTGKSVDDERDSAGSVVVRKRSNVRRAKRPCCL
Ga0302150_101333971	3300029956	Bog	MLSNWRSPPRPDEKLSEQGSRITGDTGKSVEGERDSAGSVVARKRSNVRRAK
Ga0302270_102583761	3300030011	Bog	MLSNWRSPPRPVEKSAEQGSRITGDTGKSADGERDSAGSVVARKRSNARRAKRP
Ga0311349_118861421	3300030294	Fen	MLSNWRNPPRPVAKSAEQGSRITGSTGKSVDGERDSAGSVVARKRGNV
Ga0307921_10229942	3300030712	Soil	VMLSNWRNPPRPVAKSAEQGSRITGDTGKSVDGERDSAGSVVVRKRSNVRGAKRPCCL
Ga0075379_114917881	3300030946	Soil	PVEKSAEQGSRITGDTGKSVEGERDSAGSVLARKRSNVRGAKRPCCL
Ga0265774_1046241	3300031011	Soil	NWRSPPRPVEKSAEQGSRITGDTGKSVEGERDSAGSVVAKKRSNVRGAKRPCCL
Ga0302325_101891995	3300031234	Palsa	GQHGDKVMLSNWRNPPRPVEKSAEQGSRITGDPGKSVEGERDSAGSVVAKKRSNVRGAKRPCCL
Ga0302318_106823851	3300031258	Bog	MLSNWRNPPRPVAKSAEQGSRITGDTGKSVDDERDSAGSVVVRKRSNV
Ga0170819_153954352	3300031469	Forest Soil	LSNWRNPPRPVAKSAEQGSRITGAPRKSVEDERVSEGLIVAAKRSNVRGAKEPCCLVTAPTKREARVK
Ga0170818_1022043781	3300031474	Forest Soil	ALSNWRNPPRPVAKSAEQGSRITGAPRKSVEDERVSEGLIVAAKRSNVRGAKEPCCLVTAPTKREARVK
Ga0302320_107690172	3300031524	Bog	DKVMLSNWRSPPRPVEKSAEQGSRITGDTGKSADGERDSAGSVVARKRSNVRGAKRPCCL
Ga0307476_106850801	3300031715	Hardwood Forest Soil	MLSNWRNPPHPAENTAEQGYCITGNTGKSGRDERVAEGSVVAKNRVMSGERR
Ga0302321_1036082541	3300031726	Fen	MLSNWRNPPRPVAKSAEQGSLITGDTGKSVDGERDSAGSVVVRKRSNVR
Ga0318567_107011261	3300031821	Soil	RNPPRPGEKSAEQGNRITGNTGKSVDGERDSAGSVVARKRSNVRGAKRPCCL
Ga0318567_108395561	3300031821	Soil	MPSNWRNPPRPGEKSAEQGNRITGNTGKSVDGERDSAGSVVARKRSNV
Ga0307478_109396992	3300031823	Hardwood Forest Soil	MLSNWRNPPRPAEKSAEQGSRITGSTGKAVDGERDSAGSVVARKRSNVRGAKRPC
Ga0302322_1009198302	3300031902	Fen	GDKVMLSNWRDPPRPVAKSAEQGSRITGDTGKSVDGERDSAGSVVARKRSNVRGAKRPCCFVTALTKREARVK
Ga0302322_1012380821	3300031902	Fen	MLSNWRNPPRPVAKSAEQGSRITGDTGKSVDGERDSAGSVVARKRSNVRGAK
Ga0310912_107295861	3300031941	Soil	NWRNPPRPVAKSAEDGSRITGDTGKSVEGERDSAGSVVARNRSNVRGAKGPCCFATALTTWEAKVE
Ga0318533_105277912	3300032059	Soil	ERHGDKGTPSNWRNPPRPVAKSAEEGSRITGDIGKSVEGERDSAGSVVARNRSNVRGAKGPCCFATALTTWEAKVE
Ga0370545_011340_931_1104	3300034643	Soil	MLSNWRNPPRPVEKSAEQENRITGDTGKSVDDERDSAGSVVARKRSNVRGAKRPCCL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090633

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences