Basic Information | |
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Family ID | F090629 |
Family Type | Metagenome |
Number of Sequences | 108 |
Average Sequence Length | 85 residues |
Representative Sequence | MKRIIVLLVFSAFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKKK |
Number of Associated Samples | 99 |
Number of Associated Scaffolds | 108 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 50.00 % |
% of genes near scaffold ends (potentially truncated) | 37.04 % |
% of genes from short scaffolds (< 2000 bps) | 81.48 % |
Associated GOLD sequencing projects | 92 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (65.741 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (7.407 % of family members) |
Environment Ontology (ENVO) | Unclassified (40.741 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (60.185 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 26.83% β-sheet: 6.10% Coil/Unstructured: 67.07% | Feature Viewer |
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Pfam ID | Name | % Frequency in 108 Family Scaffolds |
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PF03746 | LamB_YcsF | 49.07 |
PF12973 | Cupin_7 | 5.56 |
PF03401 | TctC | 2.78 |
PF00118 | Cpn60_TCP1 | 0.93 |
PF00106 | adh_short | 0.93 |
PF11604 | CusF_Ec | 0.93 |
PF00156 | Pribosyltran | 0.93 |
COG ID | Name | Functional Category | % Frequency in 108 Family Scaffolds |
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COG1540 | 5-oxoprolinase subunit A | Amino acid transport and metabolism [E] | 49.07 |
COG3181 | Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC | Energy production and conversion [C] | 2.78 |
COG0459 | Chaperonin GroEL (HSP60 family) | Posttranslational modification, protein turnover, chaperones [O] | 0.93 |
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Name | Rank | Taxonomy | Distribution |
Unclassified | root | N/A | 65.74 % |
All Organisms | root | All Organisms | 34.26 % |
Visualization |
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Scaffold | Taxonomy | Length | IMG/M Link |
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2162886007|SwRhRL2b_contig_448733 | Not Available | 1105 | Open in IMG/M |
2162886013|SwBSRL2_contig_12377381 | Not Available | 808 | Open in IMG/M |
2170459017|G14TP7Y02HCOLJ | Not Available | 732 | Open in IMG/M |
2209111006|2214787737 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium | 742 | Open in IMG/M |
3300000042|ARSoilYngRDRAFT_c00295 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae | 7266 | Open in IMG/M |
3300000044|ARSoilOldRDRAFT_c024373 | Not Available | 544 | Open in IMG/M |
3300000652|ARCol0yngRDRAFT_1018009 | Not Available | 542 | Open in IMG/M |
3300002128|JGI24036J26619_10011068 | All Organisms → cellular organisms → Bacteria | 1622 | Open in IMG/M |
3300002128|JGI24036J26619_10053609 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 788 | Open in IMG/M |
3300003349|JGI26129J50193_1005706 | Not Available | 889 | Open in IMG/M |
3300004047|Ga0055499_10041723 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 707 | Open in IMG/M |
3300004058|Ga0055498_10047466 | Not Available | 748 | Open in IMG/M |
3300004157|Ga0062590_102196359 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 578 | Open in IMG/M |
3300004463|Ga0063356_106340765 | Not Available | 507 | Open in IMG/M |
3300004479|Ga0062595_102068667 | Not Available | 553 | Open in IMG/M |
3300004479|Ga0062595_102540494 | Not Available | 512 | Open in IMG/M |
3300004480|Ga0062592_101149611 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 722 | Open in IMG/M |
3300005093|Ga0062594_101069070 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 785 | Open in IMG/M |
3300005162|Ga0066814_10104832 | Not Available | 533 | Open in IMG/M |
3300005164|Ga0066815_10098093 | Not Available | 547 | Open in IMG/M |
3300005169|Ga0066810_10047320 | Not Available | 829 | Open in IMG/M |
3300005290|Ga0065712_10011134 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia | 2446 | Open in IMG/M |
3300005290|Ga0065712_10092939 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 2309 | Open in IMG/M |
3300005331|Ga0070670_100144533 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 2057 | Open in IMG/M |
3300005343|Ga0070687_101094276 | Not Available | 582 | Open in IMG/M |
3300005345|Ga0070692_10036834 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas | 2484 | Open in IMG/M |
3300005353|Ga0070669_100062445 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 2739 | Open in IMG/M |
3300005440|Ga0070705_100531011 | Not Available | 898 | Open in IMG/M |
3300005456|Ga0070678_101724676 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium | 590 | Open in IMG/M |
3300005457|Ga0070662_100099033 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae | 2203 | Open in IMG/M |
3300005458|Ga0070681_11550327 | Not Available | 587 | Open in IMG/M |
3300005529|Ga0070741_10008092 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae | 21301 | Open in IMG/M |
3300005535|Ga0070684_101360110 | Not Available | 668 | Open in IMG/M |
3300005536|Ga0070697_100466006 | Not Available | 1102 | Open in IMG/M |
3300005563|Ga0068855_101494272 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 694 | Open in IMG/M |
3300005618|Ga0068864_101455620 | Not Available | 687 | Open in IMG/M |
3300006178|Ga0075367_10391907 | Not Available | 878 | Open in IMG/M |
3300006358|Ga0068871_101989644 | Not Available | 553 | Open in IMG/M |
3300006755|Ga0079222_11050680 | Not Available | 708 | Open in IMG/M |
3300006854|Ga0075425_100369211 | Not Available | 1652 | Open in IMG/M |
3300006881|Ga0068865_100410994 | Not Available | 1110 | Open in IMG/M |
3300006904|Ga0075424_101649229 | Not Available | 679 | Open in IMG/M |
3300007076|Ga0075435_101967414 | Not Available | 513 | Open in IMG/M |
3300009148|Ga0105243_10938709 | Not Available | 863 | Open in IMG/M |
3300009174|Ga0105241_11116011 | Not Available | 743 | Open in IMG/M |
3300009551|Ga0105238_11413798 | Not Available | 723 | Open in IMG/M |
3300009553|Ga0105249_10544139 | Not Available | 1211 | Open in IMG/M |
3300010371|Ga0134125_10206268 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 2187 | Open in IMG/M |
3300010375|Ga0105239_10443582 | Not Available | 1472 | Open in IMG/M |
3300010397|Ga0134124_11994255 | Not Available | 617 | Open in IMG/M |
3300010403|Ga0134123_12126303 | Not Available | 622 | Open in IMG/M |
3300012476|Ga0157344_1002872 | Not Available | 939 | Open in IMG/M |
3300012485|Ga0157325_1002917 | Not Available | 909 | Open in IMG/M |
3300012501|Ga0157351_1010506 | Not Available | 842 | Open in IMG/M |
3300012511|Ga0157332_1028963 | Not Available | 694 | Open in IMG/M |
3300012517|Ga0157354_1010060 | Not Available | 933 | Open in IMG/M |
3300012893|Ga0157284_10142306 | Not Available | 673 | Open in IMG/M |
3300012896|Ga0157303_10161102 | Not Available | 612 | Open in IMG/M |
3300012906|Ga0157295_10014192 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 1480 | Open in IMG/M |
3300012985|Ga0164308_10124282 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1861 | Open in IMG/M |
3300013307|Ga0157372_13393606 | Not Available | 507 | Open in IMG/M |
3300014308|Ga0075354_1009902 | Not Available | 1364 | Open in IMG/M |
3300014326|Ga0157380_10999070 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 870 | Open in IMG/M |
3300014968|Ga0157379_10833227 | Not Available | 872 | Open in IMG/M |
3300015371|Ga0132258_10286320 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 4046 | Open in IMG/M |
3300015371|Ga0132258_11087381 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 2021 | Open in IMG/M |
3300015372|Ga0132256_100881042 | Not Available | 1011 | Open in IMG/M |
3300015372|Ga0132256_102387688 | Not Available | 631 | Open in IMG/M |
3300015373|Ga0132257_101965239 | Not Available | 754 | Open in IMG/M |
3300015374|Ga0132255_103319349 | Not Available | 686 | Open in IMG/M |
3300017792|Ga0163161_11151864 | Not Available | 669 | Open in IMG/M |
3300019356|Ga0173481_10384987 | Not Available | 681 | Open in IMG/M |
3300022880|Ga0247792_1000326 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 10444 | Open in IMG/M |
3300022892|Ga0247753_1012952 | Not Available | 877 | Open in IMG/M |
3300023072|Ga0247799_1000014 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462 | 21410 | Open in IMG/M |
3300025315|Ga0207697_10045662 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae | 1803 | Open in IMG/M |
3300025315|Ga0207697_10128843 | Not Available | 1093 | Open in IMG/M |
3300025900|Ga0207710_10016982 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 3083 | Open in IMG/M |
3300025901|Ga0207688_10091238 | Not Available | 1750 | Open in IMG/M |
3300025903|Ga0207680_10482110 | Not Available | 882 | Open in IMG/M |
3300025907|Ga0207645_10687774 | Not Available | 695 | Open in IMG/M |
3300025911|Ga0207654_11088890 | Not Available | 582 | Open in IMG/M |
3300025934|Ga0207686_10810927 | Not Available | 751 | Open in IMG/M |
3300025936|Ga0207670_10332903 | Not Available | 1198 | Open in IMG/M |
3300026041|Ga0207639_12161430 | Not Available | 518 | Open in IMG/M |
3300026067|Ga0207678_11594776 | Not Available | 575 | Open in IMG/M |
3300026118|Ga0207675_101249674 | Not Available | 763 | Open in IMG/M |
3300026995|Ga0208761_1001426 | Not Available | 1403 | Open in IMG/M |
3300027523|Ga0208890_1007559 | Not Available | 1372 | Open in IMG/M |
3300027560|Ga0207981_1081256 | Not Available | 596 | Open in IMG/M |
3300027617|Ga0210002_1022397 | Not Available | 1024 | Open in IMG/M |
3300027682|Ga0209971_1076881 | Not Available | 812 | Open in IMG/M |
3300027876|Ga0209974_10053921 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1355 | Open in IMG/M |
(restricted) 3300031150|Ga0255311_1069885 | Not Available | 747 | Open in IMG/M |
(restricted) 3300031150|Ga0255311_1099861 | Not Available | 628 | Open in IMG/M |
(restricted) 3300031197|Ga0255310_10007278 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 2857 | Open in IMG/M |
(restricted) 3300031197|Ga0255310_10085635 | Not Available | 839 | Open in IMG/M |
(restricted) 3300031248|Ga0255312_1009500 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 2314 | Open in IMG/M |
(restricted) 3300031248|Ga0255312_1016364 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae | 1769 | Open in IMG/M |
3300031547|Ga0310887_10019557 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 2660 | Open in IMG/M |
3300031716|Ga0310813_10004808 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 8319 | Open in IMG/M |
3300031847|Ga0310907_10450886 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 679 | Open in IMG/M |
3300031858|Ga0310892_10700746 | Not Available | 694 | Open in IMG/M |
3300031908|Ga0310900_10124742 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 1698 | Open in IMG/M |
3300031944|Ga0310884_10153536 | Not Available | 1190 | Open in IMG/M |
3300032000|Ga0310903_10505900 | Not Available | 631 | Open in IMG/M |
3300033412|Ga0310810_10023569 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462 | 7459 | Open in IMG/M |
3300033513|Ga0316628_100152244 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462 | 2708 | Open in IMG/M |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Habitat | Taxonomy | Distribution |
Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 7.41% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 5.56% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 5.56% |
Sandy Soil | Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil | 5.56% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 4.63% |
Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 4.63% |
Arabidopsis Thaliana Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere | 4.63% |
Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 3.70% |
Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere | 3.70% |
Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 2.78% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 2.78% |
Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 2.78% |
Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere | 2.78% |
Corn, Switchgrass And Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 2.78% |
Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 2.78% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 2.78% |
Natural And Restored Wetlands | Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands | 1.85% |
Unplanted Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil | 1.85% |
Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere | 1.85% |
Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 1.85% |
Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 1.85% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere | 1.85% |
Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 1.85% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 1.85% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 1.85% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 1.85% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 1.85% |
Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 1.85% |
Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 0.93% |
Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.93% |
Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 0.93% |
Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 0.93% |
Natural And Restored Wetlands | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands | 0.93% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.93% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 0.93% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 0.93% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere | 0.93% |
Populus Endosphere | Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere | 0.93% |
Miscanthus Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere | 0.93% |
Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.93% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 0.93% |
Switchgrass, Maize And Mischanthus Litter | Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter | 0.93% |
Visualization |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Taxon OID | Sample Name | Habitat Type | IMG/M Link |
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2162886007 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 | Host-Associated | Open in IMG/M |
2162886013 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil | Environmental | Open in IMG/M |
2170459017 | Litter degradation ZMR4 | Engineered | Open in IMG/M |
2209111006 | Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0 | Host-Associated | Open in IMG/M |
3300000042 | Arabidopsis rhizosphere soil microbial communities from the University of North Carolina - sample from Arabidopsis soil young | Host-Associated | Open in IMG/M |
3300000044 | Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis soil old | Host-Associated | Open in IMG/M |
3300000652 | Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Col-0 young rhizosphere DNA | Host-Associated | Open in IMG/M |
3300002128 | Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 | Environmental | Open in IMG/M |
3300003349 | Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM | Host-Associated | Open in IMG/M |
3300004047 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D1 | Environmental | Open in IMG/M |
3300004058 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1 | Environmental | Open in IMG/M |
3300004157 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2 | Environmental | Open in IMG/M |
3300004463 | Combined assembly of Arabidopsis thaliana microbial communities | Host-Associated | Open in IMG/M |
3300004479 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs | Environmental | Open in IMG/M |
3300004480 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4 | Environmental | Open in IMG/M |
3300005093 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks | Environmental | Open in IMG/M |
3300005162 | Soil and rhizosphere microbial communities from Laval, Canada - mgLAB | Environmental | Open in IMG/M |
3300005164 | Soil and rhizosphere microbial communities from Laval, Canada - mgLAC | Environmental | Open in IMG/M |
3300005169 | Soil and rhizosphere microbial communities from Laval, Canada - mgHPA | Environmental | Open in IMG/M |
3300005290 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 | Host-Associated | Open in IMG/M |
3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Host-Associated | Open in IMG/M |
3300005343 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG | Environmental | Open in IMG/M |
3300005345 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG | Environmental | Open in IMG/M |
3300005353 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG | Host-Associated | Open in IMG/M |
3300005440 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG | Environmental | Open in IMG/M |
3300005456 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG | Host-Associated | Open in IMG/M |
3300005457 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG | Host-Associated | Open in IMG/M |
3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Environmental | Open in IMG/M |
3300005529 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1 | Environmental | Open in IMG/M |
3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Environmental | Open in IMG/M |
3300005536 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG | Environmental | Open in IMG/M |
3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Host-Associated | Open in IMG/M |
3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Host-Associated | Open in IMG/M |
3300006178 | Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 | Host-Associated | Open in IMG/M |
3300006358 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 | Host-Associated | Open in IMG/M |
3300006755 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter | Environmental | Open in IMG/M |
3300006854 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4 | Host-Associated | Open in IMG/M |
3300006881 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 | Host-Associated | Open in IMG/M |
3300006904 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3 | Host-Associated | Open in IMG/M |
3300007076 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 | Host-Associated | Open in IMG/M |
3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Host-Associated | Open in IMG/M |
3300009174 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG | Host-Associated | Open in IMG/M |
3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Host-Associated | Open in IMG/M |
3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Host-Associated | Open in IMG/M |
3300010371 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1 | Environmental | Open in IMG/M |
3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Host-Associated | Open in IMG/M |
3300010397 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4 | Environmental | Open in IMG/M |
3300010403 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3 | Environmental | Open in IMG/M |
3300012476 | Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.yng.070610 | Host-Associated | Open in IMG/M |
3300012485 | Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.7.old.040610 | Host-Associated | Open in IMG/M |
3300012501 | Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.170610 | Environmental | Open in IMG/M |
3300012511 | Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_10 | Environmental | Open in IMG/M |
3300012517 | Unplanted soil (control) microbial communities from North Carolina - M.Soil.6.yng.070610 | Environmental | Open in IMG/M |
3300012893 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1 | Environmental | Open in IMG/M |
3300012896 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2 | Environmental | Open in IMG/M |
3300012906 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1 | Environmental | Open in IMG/M |
3300012985 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG | Environmental | Open in IMG/M |
3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Host-Associated | Open in IMG/M |
3300014308 | Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D1 | Environmental | Open in IMG/M |
3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Host-Associated | Open in IMG/M |
3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Host-Associated | Open in IMG/M |
3300015371 | Combined assembly of cpr5 and col0 rhizosphere and soil | Host-Associated | Open in IMG/M |
3300015372 | Soil combined assembly | Host-Associated | Open in IMG/M |
3300015373 | Combined assembly of cpr5 rhizosphere | Host-Associated | Open in IMG/M |
3300015374 | Col-0 rhizosphere combined assembly | Host-Associated | Open in IMG/M |
3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Host-Associated | Open in IMG/M |
3300019356 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2) | Environmental | Open in IMG/M |
3300022880 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6 | Environmental | Open in IMG/M |
3300022892 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S169-409R-5 | Environmental | Open in IMG/M |
3300023072 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S151-409C-6 | Environmental | Open in IMG/M |
3300025315 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) | Host-Associated | Open in IMG/M |
3300025900 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025901 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) | Host-Associated | Open in IMG/M |
3300025903 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025907 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025911 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025934 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025936 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) | Environmental | Open in IMG/M |
3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300026995 | Soil and rhizosphere microbial communities from Laval, Canada - mgLAB (SPAdes) | Environmental | Open in IMG/M |
3300027523 | Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes) | Environmental | Open in IMG/M |
3300027560 | Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes) | Environmental | Open in IMG/M |
3300027617 | Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM (SPAdes) | Host-Associated | Open in IMG/M |
3300027682 | Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) | Host-Associated | Open in IMG/M |
3300027876 | Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) | Host-Associated | Open in IMG/M |
3300031150 (restricted) | Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4 | Environmental | Open in IMG/M |
3300031197 (restricted) | Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1 | Environmental | Open in IMG/M |
3300031248 (restricted) | Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5 | Environmental | Open in IMG/M |
3300031547 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4 | Environmental | Open in IMG/M |
3300031716 | Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3 | Environmental | Open in IMG/M |
3300031847 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4 | Environmental | Open in IMG/M |
3300031858 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2 | Environmental | Open in IMG/M |
3300031908 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1 | Environmental | Open in IMG/M |
3300031944 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1 | Environmental | Open in IMG/M |
3300032000 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3 | Environmental | Open in IMG/M |
3300033412 | Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC | Environmental | Open in IMG/M |
3300033513 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C | Environmental | Open in IMG/M |
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
SwRhRL2b_0920.00003350 | 2162886007 | Switchgrass Rhizosphere | MKRIIVLLVFSAFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKKPEKTATKRK |
SwBSRL2_0306.00002930 | 2162886013 | Switchgrass Rhizosphere | MKRIIVLLVFSAFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKKPEKTATKKK |
4ZMR_03425100 | 2170459017 | Switchgrass, Maize And Mischanthus Litter | MQNGEGRLIGPNMGASMKRIIVLLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKKK |
2213812749 | 2209111006 | Arabidopsis Rhizosphere | MKRIIVLLVFSAFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKKK |
ARSoilYngRDRAFT_002957 | 3300000042 | Arabidopsis Rhizosphere | MGASMKRIIVLLVFSAFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKKPEKTATKKK* |
ARSoilOldRDRAFT_0243731 | 3300000044 | Arabidopsis Rhizosphere | IVLLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKKK* |
ARCol0yngRDRAFT_10180092 | 3300000652 | Arabidopsis Rhizosphere | SMKRIIVLLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKKK* |
JGI24036J26619_100110681 | 3300002128 | Corn, Switchgrass And Miscanthus Rhizosphere | MKRIIVLLVFSAFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKKPE |
JGI24036J26619_100536091 | 3300002128 | Corn, Switchgrass And Miscanthus Rhizosphere | MGASMKRIIVLLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRILPSWSLPVYFGMHMDEKDKKPEKTATKRK* |
JGI26129J50193_10057061 | 3300003349 | Arabidopsis Thaliana Rhizosphere | MGASMKRIIVLLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKKK* |
Ga0055499_100417231 | 3300004047 | Natural And Restored Wetlands | MKRIFLLLVISAFAVSPGAAASKQRSKQATEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHLDEKDKKPEKIAKKKK* |
Ga0055498_100474662 | 3300004058 | Natural And Restored Wetlands | MKRIFLLLVISAFAVSPGAAASKQRSKQATEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHLDEKDKKPE |
Ga0062590_1021963591 | 3300004157 | Soil | MKSIFLLLVISAFAISPAVAAGKQKSKETTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHLDEKDKKPEKT |
Ga0063356_1063407651 | 3300004463 | Arabidopsis Thaliana Rhizosphere | MKSIFLLLVISALAISPAAAAGKQKSKEAIEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHLDEKDKKPEKTAKKKK* |
Ga0062595_1020686672 | 3300004479 | Soil | AISPATAASKQKSKQATEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGAHMDEKAKEPQKTAKQKK* |
Ga0062595_1025404941 | 3300004479 | Soil | MKRIIVLLVFSAFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKKPEKTATKKK* |
Ga0062592_1011496111 | 3300004480 | Soil | VYRIDFMQNGQGQQVEPQGASMKSIFLLLVISAFAISPAVAAGKQKSKETTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHLDEKDKKPEKTAKKKK* |
Ga0062594_1010690702 | 3300005093 | Soil | MKSIFLLLVISAFAISPAVAAGKQKSKETTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHLDEKDKKPEKTAKKKK* |
Ga0066814_101048321 | 3300005162 | Soil | MKRIIVLLVFSVFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKKN* |
Ga0066815_100980932 | 3300005164 | Soil | MGASMKRIIVLLVFSVFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALSDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKKK* |
Ga0066810_100473202 | 3300005169 | Soil | MQNGAGRLIGPNMGASMKRIIVLLVFSVFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALSDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKKK* |
Ga0065712_100111345 | 3300005290 | Miscanthus Rhizosphere | MKSIFLLLVISAFAISPATAASKQKSKQATEAEDIAKQHDNTLRALRDGLPLILPSWSLPVYFGAHMDEKVKEPQKTAKQKK* |
Ga0065712_100929393 | 3300005290 | Miscanthus Rhizosphere | MQNGEGRLIGPNMGASMKRIIVLLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKKK* |
Ga0070670_1001445331 | 3300005331 | Switchgrass Rhizosphere | MGASMKSIFLLLVISAFAISPATAASKQKSKQATEAEDIAKQHDNTLRALRDGLPLILPSWSLPVYFGAHMDEKVKEPQKTAKQKK* |
Ga0070687_1010942761 | 3300005343 | Switchgrass Rhizosphere | PATAASKQKSKQATEAEDIAKQHDNTLRALRDGLPLILPSWSLPVYFGAHMDEKVKEPQKTAKQKK* |
Ga0070692_100368343 | 3300005345 | Corn, Switchgrass And Miscanthus Rhizosphere | LVGPDMGASMKRIIVLLVFSAFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKKPEKTATKKK* |
Ga0070669_1000624451 | 3300005353 | Switchgrass Rhizosphere | IAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKKPEKTATKKK* |
Ga0070705_1005310112 | 3300005440 | Corn, Switchgrass And Miscanthus Rhizosphere | MKRIIVLLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKKK* |
Ga0070678_1017246762 | 3300005456 | Miscanthus Rhizosphere | MGASMKRIIVLLVFSAFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKKK* |
Ga0070662_1000990332 | 3300005457 | Corn Rhizosphere | MGASMKRIIVLLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKRK* |
Ga0070681_115503272 | 3300005458 | Corn Rhizosphere | VPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKKK* |
Ga0070741_1000809229 | 3300005529 | Surface Soil | MKKIIILFAAMAFAVSPAVAASKQKSKEAKEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGTHMDETGKKPEKTAKKKKM* |
Ga0070684_1013601101 | 3300005535 | Corn Rhizosphere | VLLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKKK* |
Ga0070697_1004660062 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | MGASMKRIIVLLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKKPEKTATKKK* |
Ga0068855_1014942722 | 3300005563 | Corn Rhizosphere | MKRIIVLLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKKP |
Ga0068864_1014556201 | 3300005618 | Switchgrass Rhizosphere | KRIIVLLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKKK* |
Ga0075367_103919071 | 3300006178 | Populus Endosphere | MRASMKSIFLLLVISAFAISPATAASKQKSKQATEAEDIAKQHDNTLRALRDGLPLILPSWSLPVYFGAHMDEKVKEPQKTAKQKK* |
Ga0068871_1019896442 | 3300006358 | Miscanthus Rhizosphere | LIGPNMGASMKRIIVLLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKKK* |
Ga0079222_110506801 | 3300006755 | Agricultural Soil | MKKVVILFAAMAFAVTPAVAATKQKSKEAKEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGTHMDETGKKPEKTAKKKKM* |
Ga0075425_1003692113 | 3300006854 | Populus Rhizosphere | MKKVVILFAAMAFAVSPAIAATKQKSKEAREAEEIAKQHDNTLRALRDGLPLILPSWSLPIYFGAHMDETGKKPEKTAKKKKM* |
Ga0068865_1004109944 | 3300006881 | Miscanthus Rhizosphere | MGASMKRIIVLLVFSAFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKKPEKTATKMK* |
Ga0075424_1016492291 | 3300006904 | Populus Rhizosphere | VLLVFSAFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKKPEKTATKKK* |
Ga0075435_1019674141 | 3300007076 | Populus Rhizosphere | MKRIIVLLVFSAFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKKK* |
Ga0105243_109387091 | 3300009148 | Miscanthus Rhizosphere | IIVLLVFSVFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKKK* |
Ga0105241_111160112 | 3300009174 | Corn Rhizosphere | MQNGEGRLIGPNMGASMKRIIVLLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKKPEKTATKKK* |
Ga0105238_114137982 | 3300009551 | Corn Rhizosphere | MGASMKRIIVLLVFSAFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKRK* |
Ga0105249_105441393 | 3300009553 | Switchgrass Rhizosphere | MQNGEGRLIGPNMGASMKRIIVLLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKRK* |
Ga0134125_102062685 | 3300010371 | Terrestrial Soil | MKKFVILIAATIFAVSPAIAAKKKSQEAKEADEIAKQHDNTLRALRDSLPLILPSWSLPVYFGTHMDETGKKPEKSAKKKKM* |
Ga0105239_104435823 | 3300010375 | Corn Rhizosphere | MKSIFLLLVISAFAISPATAASKQKSKQATEAEDIAKQHDNTLRALRDGLPLILPSWSLPVYFGAHMDEKVKEPQKTVKQKK* |
Ga0134124_119942553 | 3300010397 | Terrestrial Soil | FSAFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHLDEKDKKPEKTAKKKK* |
Ga0134123_121263031 | 3300010403 | Terrestrial Soil | QGQQVEPQGASMKSMFLLLVISAFAISPAVAAGKQKSKETTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHLDEKDKKPEKTAKKKK* |
Ga0157344_10028724 | 3300012476 | Arabidopsis Rhizosphere | SAFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKKPEKTATKKK* |
Ga0157325_10029172 | 3300012485 | Arabidopsis Rhizosphere | MQNGEGRLIGPNMGASMKRIIVLLVFSAFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMQMDEKDKKPEKTATKKK* |
Ga0157351_10105061 | 3300012501 | Unplanted Soil | MKRIIVLLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKKPEKTAT |
Ga0157332_10289631 | 3300012511 | Soil | MKRIIVLLVFSAFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHLDEKDKKPEKTAKKKK* |
Ga0157354_10100602 | 3300012517 | Unplanted Soil | MKRIIVLLVFSAFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDE |
Ga0157284_101423062 | 3300012893 | Soil | MQNGEGRLIGPNMGASMKRIIVLLVFSAFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKKPEKTATKKK* |
Ga0157303_101611022 | 3300012896 | Soil | VYRIDFMQNSQGQPSGNMGVSMKSIFLLLVISVFAISPATAASKQKSKQATEAEDIAKQHDNTLRALRDGLPLILPSWSLPVYFGAHMDEKVKEPQKTAKQKK* |
Ga0157295_100141923 | 3300012906 | Soil | MQNGEGRLIGPNMGASMKRIIVLLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHIDEKDKKPKKTATKKK* |
Ga0164308_101242821 | 3300012985 | Soil | RIIVLLVFSAFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKKPEKTATKKK* |
Ga0157372_133936061 | 3300013307 | Corn Rhizosphere | PQGASMKSIFLLLVISAFAISPAVAAGKQKSKETTEAEEIAKQHDNTLRALLDGLPLILPSWSLPVYFGMHLDEKDKKPEKTAKKKK* |
Ga0075354_10099023 | 3300014308 | Natural And Restored Wetlands | MKRIFLLLVISAFAVSPGAAASKQRSKQATEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHLDEKDKKPEK |
Ga0157380_109990702 | 3300014326 | Switchgrass Rhizosphere | MKRIIVLLVFSAFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVFFGMHMDEKDKKKPEKTATKKK* |
Ga0157379_108332271 | 3300014968 | Switchgrass Rhizosphere | MKRIIVLLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKKPEKTATKRK* |
Ga0132258_102863205 | 3300015371 | Arabidopsis Rhizosphere | VYRIDFMQNSYGQQSGNMGASMKGVFLLLVISAFAISPATAASKQKSKQATEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGTHMDEKMKEPQKTAKQKK* |
Ga0132258_110873815 | 3300015371 | Arabidopsis Rhizosphere | VYRIDFMQNGQGQQVEPQGASMKSIFLLLVISAFAISPAVAGGKQKSKETTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHLDEKDKKPEKTAKKKK* |
Ga0132256_1008810422 | 3300015372 | Arabidopsis Rhizosphere | MRVPVYRIDFMQNRQGQQVEPQGASMKSIFLLLVISAFAISPAVAGGKQKSKETTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHLDEKDKKPEKTAKKKK* |
Ga0132256_1023876882 | 3300015372 | Arabidopsis Rhizosphere | MKSIFLLLVISAFAISPATAASKQKSKKATEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGTHMDEKMKEPQKTAKQKK* |
Ga0132257_1019652391 | 3300015373 | Arabidopsis Rhizosphere | MRVPVYRIDFMQNRQGQQVEPQGASMKSIFLLLVISAFAISPAVAAGKQKSKEATEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHLDEKDKKPEKTAKKKK* |
Ga0132255_1033193492 | 3300015374 | Arabidopsis Rhizosphere | VYRIDFMQNRQGQQVEPQGASMKSIFLLLVISAFAISPAVAAGKQKSKETTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHLDEKDKKPEKTAKKKK* |
Ga0163161_111518641 | 3300017792 | Switchgrass Rhizosphere | MGASMKRIIVLLVFSAFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKKPEKTATKKK |
Ga0173481_103849871 | 3300019356 | Soil | MGASMKRIIVLLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKRK |
Ga0247792_10003268 | 3300022880 | Soil | MGASMKRIIVLLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKKK |
Ga0247753_10129522 | 3300022892 | Soil | MGASMKRIIVLLVFSAFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKKK |
Ga0247799_100001425 | 3300023072 | Soil | RIIVLLVFSAFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKKK |
Ga0207697_100456623 | 3300025315 | Corn, Switchgrass And Miscanthus Rhizosphere | MGASMKRIIVLLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKKPEKTATKKK |
Ga0207697_101288433 | 3300025315 | Corn, Switchgrass And Miscanthus Rhizosphere | MGASMKSIFLLLVISAFAISPATAASKQKSKQATEAEDIAKQHDNTLRALRDGLPLILPSWSLPVYFGAHMDEKVKEPQKTAKQKK |
Ga0207710_100169824 | 3300025900 | Switchgrass Rhizosphere | MKSIFLLLVISAFAISPATAASKQKSKQATEAEDIAKQHDNTLRALRDGLPLILPSWSLPVYFGAHMDEKVKEPQKTAKQKK |
Ga0207688_100912383 | 3300025901 | Corn, Switchgrass And Miscanthus Rhizosphere | MQNGEGRLIGPNMGASMKRIIVLLVFSAFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKKPEKTATKKK |
Ga0207680_104821102 | 3300025903 | Switchgrass Rhizosphere | MKRIIVLLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKKK |
Ga0207645_106877741 | 3300025907 | Miscanthus Rhizosphere | LVGPDMGASMKRIIVLLVFSAFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKKPEKTATKKK |
Ga0207654_110888902 | 3300025911 | Corn Rhizosphere | EGRLIGPNMGASMKRIIVLLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKKPEKTATKKK |
Ga0207686_108109272 | 3300025934 | Miscanthus Rhizosphere | MKRIIVLLVFSAFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMD |
Ga0207670_103329031 | 3300025936 | Switchgrass Rhizosphere | MGASMKSIFLLLVISAFAISPATAASKQKSKQATEAEDIAKQHDNTLRALRDGLPLILPSWSLPVYFGAHMDEKVKEPQKTAK |
Ga0207639_121614302 | 3300026041 | Corn Rhizosphere | VISAFAISPAVAAGKQKSKETTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKKK |
Ga0207678_115947762 | 3300026067 | Corn Rhizosphere | KRIIVLLVFSAFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKKPEKTATKKK |
Ga0207675_1012496743 | 3300026118 | Switchgrass Rhizosphere | LLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKKK |
Ga0208761_10014264 | 3300026995 | Soil | MGASMKRIIVLLVFSVFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKKK |
Ga0208890_10075595 | 3300027523 | Soil | AVPATAVAKQKSKQQTEADEIAKQHDNTLRALSDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKKK |
Ga0207981_10812561 | 3300027560 | Soil | MGASMKRIIVLLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMD |
Ga0210002_10223972 | 3300027617 | Arabidopsis Thaliana Rhizosphere | MGASMKSIFLLLVISAFAISPAAAASKQKSKQATEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKKK |
Ga0209971_10768811 | 3300027682 | Arabidopsis Thaliana Rhizosphere | MKSIFLLLVISAFAISPAAAASKQKSKQATEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKPAPKKK |
Ga0209974_100539213 | 3300027876 | Arabidopsis Thaliana Rhizosphere | MKSIFLLLVISAFAISPAAAASKQKSKQATEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKP |
(restricted) Ga0255311_10698852 | 3300031150 | Sandy Soil | MKRIIVLLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPE |
(restricted) Ga0255311_10998611 | 3300031150 | Sandy Soil | ISVFAISPAAGASKQKSKQATEAEEIAKQHDNTLRALRDGLPLILPTWSLPVYFNLNKDGKTEKSQKTAKQKK |
(restricted) Ga0255310_100072785 | 3300031197 | Sandy Soil | MQNGEGRLIGPNMGASMKRIIVLLVFSAFIAVPATAVAKQKSKQQTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKKK |
(restricted) Ga0255310_100856353 | 3300031197 | Sandy Soil | VKSIFLLLVISVFAISPAAGASKQKSKQATEAEEIAKQHDNTLRALRDGLPLILPTWSLPVYFNLNKDGKTEKSQKTAKQKK |
(restricted) Ga0255312_10095002 | 3300031248 | Sandy Soil | VEPQGASVKSIFLLLVISVFAISPAAGASKQKSKQATEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHLDEKDKKPEKTAKKKK |
(restricted) Ga0255312_10163643 | 3300031248 | Sandy Soil | MGASMKSIFLLLVISVFAISPAAGASKQKSKQATEAEEIAKQHDNTLRALRDGLPLILPTWSLPVYFNLNKDGKTEKSQKTAKQKK |
Ga0310887_100195572 | 3300031547 | Soil | MQNGEGRLIGPNMGASMKRIIVLLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKRK |
Ga0310813_100048081 | 3300031716 | Soil | MKRIFLLLVISAFAISPAAAAGKQKSKEAIEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHLDEKDKKPEKTAKKKK |
Ga0310907_104508862 | 3300031847 | Soil | MKRIIVLLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKRK |
Ga0310892_107007462 | 3300031858 | Soil | LIGPNMGASMKRIIVLLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKRK |
Ga0310900_101247423 | 3300031908 | Soil | MKRIIVLLVFSAFIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATK |
Ga0310884_101535361 | 3300031944 | Soil | MKRIIVLLVFSAFIAVPATASAKQKSKQPTEAEEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKKPEKTATK |
Ga0310903_105059003 | 3300032000 | Soil | FIAVPATAVAKQKSKQQTEADEIAKQHDNTLRALRDGLPLILPSWSLPVYFGMHMDEKDKKPEKTATKKK |
Ga0310810_100235692 | 3300033412 | Soil | MGASMKSIFLLLVISAFAISPATAASKQKSKQATETEDIAKQHDNTLRALRDGLPLILPSWSLPVYFGAHMDEKVKEPQKTAKQKK |
Ga0316628_1001522444 | 3300033513 | Soil | MGASMKSIILLLVISAFAVSPAVAASKHKSKQATEAEEIAKQHDNTLRALRDGLPLILPTWSLPIYFNMNKDEKSDKTEKTAKKKK |
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