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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F090624 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 108 |
| Average Sequence Length | 50 residues |
| Representative Sequence | MSARIMSARNMSAQIIARLASLVAGLRATFRQSRMRLRRRVAHHGLAAID |
| Number of Associated Samples | 95 |
| Number of Associated Scaffolds | 108 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 0.93 % |
| % of genes from short scaffolds (< 2000 bps) | 1.85 % |
| Associated GOLD sequencing projects | 87 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.45 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (96.296 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (14.815 % of family members) |
| Environment Ontology (ENVO) | Unclassified (51.852 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (67.593 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 61.54% β-sheet: 0.00% Coil/Unstructured: 38.46% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.45 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 108 Family Scaffolds |
|---|---|---|
| PF08238 | Sel1 | 44.44 |
| PF13460 | NAD_binding_10 | 11.11 |
| PF00196 | GerE | 2.78 |
| PF00072 | Response_reg | 0.93 |
| PF05231 | MASE1 | 0.93 |
| PF13593 | SBF_like | 0.93 |
| PF13410 | GST_C_2 | 0.93 |
| PF01131 | Topoisom_bac | 0.93 |
| COG ID | Name | Functional Category | % Frequency in 108 Family Scaffolds |
|---|---|---|---|
| COG0550 | DNA topoisomerase IA | Replication, recombination and repair [L] | 0.93 |
| COG0642 | Signal transduction histidine kinase | Signal transduction mechanisms [T] | 0.93 |
| COG1110 | Reverse gyrase | Replication, recombination and repair [L] | 0.93 |
| COG3447 | Integral membrane sensor domain MASE1 | Signal transduction mechanisms [T] | 0.93 |
| COG3851 | Signal transduction histidine kinase UhpB, glucose-6-phosphate specific | Signal transduction mechanisms [T] | 0.93 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 96.30 % |
| All Organisms | root | All Organisms | 3.70 % |
| Visualization |
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| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300005615|Ga0070702_100161722 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860 | 1448 | Open in IMG/M |
| 3300025986|Ga0207658_10399735 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860 | 1207 | Open in IMG/M |
| 3300026555|Ga0179593_1136175 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 3556 | Open in IMG/M |
| 3300031170|Ga0307498_10000967 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 4105 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 14.81% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 9.26% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 4.63% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 4.63% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 3.70% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 3.70% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 3.70% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 3.70% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 3.70% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 3.70% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 3.70% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 3.70% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 2.78% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 2.78% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 2.78% |
| Populus Endosphere | Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere | 2.78% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 2.78% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 2.78% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 1.85% |
| Serpentine Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil | 1.85% |
| Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere | 1.85% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere | 1.85% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 1.85% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 1.85% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere | 1.85% |
| Unplanted Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil | 0.93% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 0.93% |
| Grass Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil | 0.93% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 0.93% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 0.93% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 0.93% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.93% |
| Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere | 0.93% |
| Visualization |
|---|
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| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2170459005 | Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm | Environmental | Open in IMG/M |
| 3300001991 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2 | Host-Associated | Open in IMG/M |
| 3300002070 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4 | Host-Associated | Open in IMG/M |
| 3300002459 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 | Host-Associated | Open in IMG/M |
| 3300002568 | Grasslands soil microbial communities from Hopland, California, USA - 2 | Environmental | Open in IMG/M |
| 3300004081 | Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2) | Environmental | Open in IMG/M |
| 3300005162 | Soil and rhizosphere microbial communities from Laval, Canada - mgLAB | Environmental | Open in IMG/M |
| 3300005164 | Soil and rhizosphere microbial communities from Laval, Canada - mgLAC | Environmental | Open in IMG/M |
| 3300005165 | Soil and rhizosphere microbial communities from Laval, Canada - mgHMC | Environmental | Open in IMG/M |
| 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Environmental | Open in IMG/M |
| 3300005330 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG | Environmental | Open in IMG/M |
| 3300005337 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG | Environmental | Open in IMG/M |
| 3300005338 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 | Host-Associated | Open in IMG/M |
| 3300005343 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG | Environmental | Open in IMG/M |
| 3300005345 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG | Environmental | Open in IMG/M |
| 3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Host-Associated | Open in IMG/M |
| 3300005365 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG | Environmental | Open in IMG/M |
| 3300005456 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG | Host-Associated | Open in IMG/M |
| 3300005459 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 | Host-Associated | Open in IMG/M |
| 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Environmental | Open in IMG/M |
| 3300005615 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG | Environmental | Open in IMG/M |
| 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Host-Associated | Open in IMG/M |
| 3300005834 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 | Host-Associated | Open in IMG/M |
| 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Host-Associated | Open in IMG/M |
| 3300006051 | Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 | Host-Associated | Open in IMG/M |
| 3300006186 | Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 | Host-Associated | Open in IMG/M |
| 3300006196 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 | Host-Associated | Open in IMG/M |
| 3300006353 | Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 | Host-Associated | Open in IMG/M |
| 3300006573 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006574 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006579 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006581 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006953 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Host-Associated | Open in IMG/M |
| 3300009101 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG | Host-Associated | Open in IMG/M |
| 3300009174 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG | Host-Associated | Open in IMG/M |
| 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Host-Associated | Open in IMG/M |
| 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Host-Associated | Open in IMG/M |
| 3300009840 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A | Environmental | Open in IMG/M |
| 3300010036 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26 | Environmental | Open in IMG/M |
| 3300011107 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300012212 | Combined assembly of Hopland grassland soil | Host-Associated | Open in IMG/M |
| 3300012469 | Combined assembly of Soil carbon rhizosphere | Host-Associated | Open in IMG/M |
| 3300012489 | Unplanted soil (control) microbial communities from North Carolina - M.Soil.5.yng.040610 | Environmental | Open in IMG/M |
| 3300012922 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG | Environmental | Open in IMG/M |
| 3300012924 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012951 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG | Environmental | Open in IMG/M |
| 3300012958 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG | Environmental | Open in IMG/M |
| 3300012986 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG | Environmental | Open in IMG/M |
| 3300012988 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG | Environmental | Open in IMG/M |
| 3300012989 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG | Environmental | Open in IMG/M |
| 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Host-Associated | Open in IMG/M |
| 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Host-Associated | Open in IMG/M |
| 3300014745 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG | Host-Associated | Open in IMG/M |
| 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Host-Associated | Open in IMG/M |
| 3300015371 | Combined assembly of cpr5 and col0 rhizosphere and soil | Host-Associated | Open in IMG/M |
| 3300015372 | Soil combined assembly | Host-Associated | Open in IMG/M |
| 3300015373 | Combined assembly of cpr5 rhizosphere | Host-Associated | Open in IMG/M |
| 3300015374 | Col-0 rhizosphere combined assembly | Host-Associated | Open in IMG/M |
| 3300018054 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1 | Environmental | Open in IMG/M |
| 3300018073 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1 | Environmental | Open in IMG/M |
| 3300018429 | Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T | Environmental | Open in IMG/M |
| 3300018920 | Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS | Environmental | Open in IMG/M |
| 3300019361 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2) | Environmental | Open in IMG/M |
| 3300020016 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1 | Environmental | Open in IMG/M |
| 3300022915 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4 | Environmental | Open in IMG/M |
| 3300025321 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025893 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025899 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025901 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025918 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025927 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025940 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025941 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025942 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025960 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025961 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026075 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026555 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
| 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028716 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198 | Environmental | Open in IMG/M |
| 3300028754 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157 | Environmental | Open in IMG/M |
| 3300028782 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193 | Environmental | Open in IMG/M |
| 3300028824 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197 | Environmental | Open in IMG/M |
| 3300028885 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185 | Environmental | Open in IMG/M |
| 3300031170 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S | Environmental | Open in IMG/M |
| 3300031740 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05 | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| E41_11173930 | 2170459005 | Grass Soil | MSSRNVSSRNMSAGITSAHIVALLASPVARATFRQSRMRLCRRVRPPTGS |
| JGI24743J22301_101243052 | 3300001991 | Corn, Switchgrass And Miscanthus Rhizosphere | MRARIMSARNMSAGIVSAQIIARLASLVAGLRATFRXSRMRLRRRVAHHGLAAID* |
| JGI24750J21931_10058372 | 3300002070 | Corn, Switchgrass And Miscanthus Rhizosphere | MSAGIVSAQIIARLASLVAGLRATFRXSRMRLRRRVAHHGLAAID* |
| JGI24751J29686_101168422 | 3300002459 | Corn, Switchgrass And Miscanthus Rhizosphere | PPACVRAGVGAQAMRARIMSAGIVSAQIIARLASLVAGLRATFRQSRMRLRRRVAHHGLAAID* |
| C688J35102_1181082972 | 3300002568 | Soil | MRARMINARNMSAYIMPAHIIARLVSLAAELRATFRQSRMRLCRRVARHGLAAID* |
| C688J35102_1202953782 | 3300002568 | Soil | MSAQIVNARIMSGHIVVLLVSLAAGLRAAFGRSRMRLCRRLAHHGLAAID* |
| C688J35102_1209519345 | 3300002568 | Soil | MSARNMSAGIVSAQIIARLASLVAGLRATFRQSRMRLRRRVAHHGLAAID* |
| Ga0063454_1019395551 | 3300004081 | Soil | MSAHVMSARCTSAHVVARLVSLAAGLRATFRRSRLRLCRRVARHGLAAID* |
| Ga0066814_100393261 | 3300005162 | Soil | MSARNMSAQIIARLASLVAGLRATFRRSRMRLRRRVAHHGLAAID* |
| Ga0066815_100768191 | 3300005164 | Soil | MSSRNVSSRNMSAGITSAHIVALLASPVARATFRQSRMRLCRRVAHHGLAAIG |
| Ga0066869_101115571 | 3300005165 | Soil | RPPACVRAGVGAQAMRARIMSAGIVSAQIIARLASLVAGLRATFRQSRMRLRRRVAHHGLAAID* |
| Ga0070683_1002034942 | 3300005329 | Corn Rhizosphere | MSAGIVSAQIIARLASLVAGLRATFRQSRMRLRRRVAHHGLAAID* |
| Ga0070690_1000651551 | 3300005330 | Switchgrass Rhizosphere | MRARIMSARNMSAGIVSAQIIARLASLVAGLRATFRQSRMRLRRRVAHHGLAAID* |
| Ga0070682_1006306902 | 3300005337 | Corn Rhizosphere | MSARNMSARNMSAQIIARLASLVAGLRATFRQSRMRLRRRVAHHGLAAID* |
| Ga0068868_1000268418 | 3300005338 | Miscanthus Rhizosphere | MSARNMSAQIIARLASLVAGLRATFRQSRMRLRRRVAHHGLAAID* |
| Ga0070687_1000057478 | 3300005343 | Switchgrass Rhizosphere | MSARNMSAGIVSAQIIARLASLVAGLRATFRRSRMRLRRRVAHHGLAAID* |
| Ga0070692_105525021 | 3300005345 | Corn, Switchgrass And Miscanthus Rhizosphere | ARIMSARNMSARNMSAQIIARLASLVAGLRATFRQSRMRLRRRVAHHGLAAID* |
| Ga0070671_1007890152 | 3300005355 | Switchgrass Rhizosphere | MSAGIVSAQIIARLASLVAGLRATFRRSRMRLRRRVAHHGLAAID* |
| Ga0070688_1000894033 | 3300005365 | Switchgrass Rhizosphere | RLVPRPPACVRAGVGAQAMRARIMSAGIVSAQIIARLASLVAGLRATFRRSRMRLRRRVAHHGLAAID* |
| Ga0070678_1001905553 | 3300005456 | Miscanthus Rhizosphere | MSARVMRAQVVALLVSVVAGLGAAFRQSRTRLCRRLARHGLAAIE* |
| Ga0070678_1012179042 | 3300005456 | Miscanthus Rhizosphere | MSARIMSARNMSAQIIARLASLVAGLRATFRRSRMRLRRRVAHHGLAAID* |
| Ga0068867_1012584472 | 3300005459 | Miscanthus Rhizosphere | MRARIMSAGIVSAQIIARLASLVAGLRATFRQSRMRLRRRVAHHGLAAID* |
| Ga0070684_1014372491 | 3300005535 | Corn Rhizosphere | NMSAQIIARLASLVAGLRATFRQSRMRLRRRVAHHGLAAID* |
| Ga0070702_1001617221 | 3300005615 | Corn, Switchgrass And Miscanthus Rhizosphere | MSAHLVSVRVMRAHVVGLLVSVVAGLGAAFRQSRTRLCRRLARHGLAAIE* |
| Ga0068864_1014740662 | 3300005618 | Switchgrass Rhizosphere | MSARVMRAHVVALLVSVVAGLGAAFRQSRTRLCRRLARHGLAAID* |
| Ga0068851_101892573 | 3300005834 | Corn Rhizosphere | MSAGIVSAQIIARLASLVAGLRATFRQSRMRLRRRVAHYGLAAID* |
| Ga0068863_1021542811 | 3300005841 | Switchgrass Rhizosphere | SAQIIARLASLVAGLRATFRRSRMRLRRRVAHHGLAAID* |
| Ga0075364_107726592 | 3300006051 | Populus Endosphere | MRANVVALLVSVVAGLRAAFRQSRTRLYRRLARHGSQAID* |
| Ga0075369_100432632 | 3300006186 | Populus Endosphere | MRANVVALLVSVVAGLRAAFRQSRTRLYRRLARHGSQRID* |
| Ga0075422_105253251 | 3300006196 | Populus Rhizosphere | AHVMRTRIVSAHVVTRLVPLVAGLRAAFRRSRIRLCRRVARHGLAAID* |
| Ga0075370_107481822 | 3300006353 | Populus Endosphere | MRAHSISARRMSARRMSARIVSAHIASAQIIARLAALAAGLRASFRRSRLRLCRRAAHNGLAAID* |
| Ga0074055_100040941 | 3300006573 | Soil | MSAGITGAHIVALLASPVARATFRQSCMRLCRRVAHHGLAAIG* |
| Ga0074056_100136501 | 3300006574 | Soil | RSGRITSAHIMRAHVVARLVSLAAGLRATFRQSRMRLRRRVAHHGLAAID* |
| Ga0074054_100194432 | 3300006579 | Soil | MSAGITSAHIVALLASPVARATFRQSRMRLCRRVAHHGLAAIG* |
| Ga0074048_134974591 | 3300006581 | Soil | MSARIMSARNMSAQIIARLASLVAGLRATFRQSRMRLRRRVAHHGLAAID* |
| Ga0074063_100848691 | 3300006953 | Soil | MSSRNVSSRNMSAGITSAHIVALLASPVARATFRQPRMRLCRRVAHHGLTAIG* |
| Ga0074063_129167742 | 3300006953 | Soil | MSARNMSSRTMTARANSARITRAHIMRAHVVARLVSLAAGLRATFRQSRTRLCRRLAHHGL* |
| Ga0105245_100706982 | 3300009098 | Miscanthus Rhizosphere | MKAHTMRAHIARAHVVVRLVSLVAGLRAAFGQSRMRLCRRLARHGLAAID* |
| Ga0105247_113192802 | 3300009101 | Switchgrass Rhizosphere | MTSRNMKAHTMRAHIARAHVVVRLVSLVAGLRAAFGQSRMRLCRRLARHGLAAID* |
| Ga0105241_101558711 | 3300009174 | Corn Rhizosphere | MSARIMSARNMSAQIIARLASLVAGLRATFRQSRMRLRRRVAHHGL |
| Ga0105242_107592471 | 3300009176 | Miscanthus Rhizosphere | MRAHNVSAHMSAHILTSRIVPLLASLVAALRASFRRSRLRLCRRASHHGLAAID* |
| Ga0105249_124547681 | 3300009553 | Switchgrass Rhizosphere | KAHTMRAHIARAHVVVRLVSLVAGLRAAFGQSRMRLCRRLARHGLAAID* |
| Ga0126313_115441451 | 3300009840 | Serpentine Soil | MSAGILSAHIIARLASLVAGVRAAFRQSRTRLCRRMARHGLGAID* |
| Ga0126305_100848394 | 3300010036 | Serpentine Soil | SSRHVSARIVSAHVVTRLVPLVAGLRAAFRRSRMRLCRRVARHGLAAID* |
| Ga0151490_15750101 | 3300011107 | Soil | MSANNMSSRNVSSRNMSAGITSAHIVALLASPVARATFRQSRMRLCRRVAHHGLAAIG* |
| Ga0150985_1197715855 | 3300012212 | Avena Fatua Rhizosphere | MINARNMSAYIMPAHIIARLVSLAAELRATFRQSRMRLCRRVARHGLAAID* |
| Ga0150985_1203268503 | 3300012212 | Avena Fatua Rhizosphere | MSAHLVSVRVMRAHVVGLLVSVVAGLGAAFRQSRTRLCRRLARHGLAAID* |
| Ga0150984_1106957291 | 3300012469 | Avena Fatua Rhizosphere | MTARIMSARNMSAGIVSAQIIARLASLVAGLRATFRQSRMRLRRRVAHHGLAAID* |
| Ga0157349_10219232 | 3300012489 | Unplanted Soil | ACVRAGVGAQAMRARIMSARNMSAGIVSAQIIARLASLVAGLRATFRQSRMRLRRRVAHHGLAAID* |
| Ga0137394_114818752 | 3300012922 | Vadose Zone Soil | MSADITSAHIVALLASPVARATFRQSRMRRRVAHHGLAAIG* |
| Ga0137413_107286601 | 3300012924 | Vadose Zone Soil | MTEHVMSAHFTARLASLMAGLRAAFRQSRMRLCRRLARHGL |
| Ga0164300_103878112 | 3300012951 | Soil | MSARAKSGRITSAHIMRAHVVARLVSLAAGLRAAFRQSRTRLCRRLAHHGL* |
| Ga0164299_110237112 | 3300012958 | Soil | MTAGANSARITRAHIMRAHVVARLVSLAAGLRAAFRQSRTRLCRRLAHHGL* |
| Ga0164304_115846441 | 3300012986 | Soil | MSARTMSAHIASAHIVALLVSLAARLRAAFRQSRMRLCRRVAHHGLAAIG |
| Ga0164306_101159874 | 3300012988 | Soil | MTAGANSARITRAHIMRAHVVARLVSLAAGLRATFRQSRTRLCRRLAHHGL* |
| Ga0164306_102485622 | 3300012988 | Soil | MSAGIVSAQIIARLASLVAGFRATFRQSRMRLRRRVAHHGLAAID* |
| Ga0164305_100437823 | 3300012989 | Soil | MTARANSARITRAHIMRAHVVARLVSLAAGLRAAFRQSRTRLCRRLAHHGL* |
| Ga0157374_109056111 | 3300013296 | Miscanthus Rhizosphere | MSAQIIARLASLVAGLRATFRRSRMRLRRRVVHHGLAAID* |
| Ga0163162_114902361 | 3300013306 | Switchgrass Rhizosphere | MKAHTMRAHIARAHVVVRLVSLVAGLRAAFGQSRMRLCRRLARHGLA |
| Ga0157377_100404634 | 3300014745 | Miscanthus Rhizosphere | GVGAQAMSARIMSARNMSAQIIARLASLVAGLRATFRRSRMRLRRRVAHHGLAAID* |
| Ga0157377_110268232 | 3300014745 | Miscanthus Rhizosphere | MSAGIVSAHIIARLASLVAGLRATFRQSRMRLRRRVAHHGLAAID* |
| Ga0157379_100234618 | 3300014968 | Switchgrass Rhizosphere | VGAQAMSARIMSARNMSAQIIARLASLVAGLRATFRRSRMRLRRRVAHHGLAAID* |
| Ga0132258_102374395 | 3300015371 | Arabidopsis Rhizosphere | MSARAKSGRITSAHIMRAHVVARLVSLAAGLRATFRQSRTRLCRRLAHHGL* |
| Ga0132256_1006303103 | 3300015372 | Arabidopsis Rhizosphere | MSARIMSARNMSAGIVSAQIIARLVSLVAGLRATFRQSRMRLRRRVAHHGLAAID* |
| Ga0132256_1010613523 | 3300015372 | Arabidopsis Rhizosphere | MTARANSARITRAHIMRAHVVARLVSLAAGLRATFRQSRTRLCRRLAHHGL* |
| Ga0132257_1024639821 | 3300015373 | Arabidopsis Rhizosphere | QAMRARIMSARNMSAGIVSAQIIARLASLVAGLRATFRQSRMRLRRRVAHHGLAAID* |
| Ga0132257_1041079552 | 3300015373 | Arabidopsis Rhizosphere | MSARVMRAHVVALLVSVVAGLGAAFRQSRTRLCRRLARHGLAAIE* |
| Ga0132255_1062731141 | 3300015374 | Arabidopsis Rhizosphere | ANNMSSRNASSRNMSAGITGAHIVALLASPVARATFRQSCMRLCRRVAHHGLAAIG* |
| Ga0184621_101233522 | 3300018054 | Groundwater Sediment | MSAHIVSARIMLAHIVALLVSLVAGLRAAFGQSRMRLCRR |
| Ga0184624_101154792 | 3300018073 | Groundwater Sediment | MTSCNMTSRHMSAHIVSARIMLAHIVALLVSLVAGLRAAFGQSRMRLCRRLARHGLAAID |
| Ga0190272_124654521 | 3300018429 | Soil | MNTHVMSARSMSAHVVVRLVSLAAGLRATFRRSRMRLCRRAARH |
| Ga0190273_114382261 | 3300018920 | Soil | NVSSSHRSAHIVSARSMSAHVVVRLVSLAAGLRATFRRSRMRLCRRVARHGLAAID |
| Ga0173482_104825801 | 3300019361 | Soil | MRARIMSAGIVSAQIIARLASLVAGLRATFRQSRMRLRRRVAHHGLAAID |
| Ga0193696_10958512 | 3300020016 | Soil | MQHDLTSHAHIVALLVSLVAGLRAAFGQSRMRLCRRLARHGLAAID |
| Ga0247790_100829441 | 3300022915 | Soil | MSAGIVSAQIIARLASLVAGLRATFRQSRMRLRRRVAHHG |
| Ga0207656_101949672 | 3300025321 | Corn Rhizosphere | MSAGIVSAQIIARLASLVAGLRATFRQSRVRLRRRVAHHGLAAID |
| Ga0207682_104743462 | 3300025893 | Miscanthus Rhizosphere | HVVGLLVSVVAGLGAAFRQSRTRLCRRLARHGLAAIE |
| Ga0207642_102123651 | 3300025899 | Miscanthus Rhizosphere | MRARIMSARNMSAGIVSAQIIARLASLVAGLRATFRQSRMRLRRR |
| Ga0207642_107005912 | 3300025899 | Miscanthus Rhizosphere | VGAQAMRARIMSARNMSAGIVSAQIIARLASLVAGLRATFRRSRMRLRRRVAHHGLAAID |
| Ga0207688_100038859 | 3300025901 | Corn, Switchgrass And Miscanthus Rhizosphere | MSARNMSAGIVSAQIIARLASLVAGLRATFRQSRMRLRRRVAHYGLAAID |
| Ga0207671_113605471 | 3300025914 | Corn Rhizosphere | MSAGIVSAQIIARLASLVAGLRATFRQSRMRLRRRVAHH |
| Ga0207662_100085597 | 3300025918 | Switchgrass Rhizosphere | MSARNMSAGIVSAQIIARLASLVAGLRATFRQSRMRL |
| Ga0207657_103777213 | 3300025919 | Corn Rhizosphere | RAGVGAQAMRARIMSAGIVSAQIIARLASLVAGLRATFRQSRMRLRRRVAHHGLAAID |
| Ga0207687_100667364 | 3300025927 | Miscanthus Rhizosphere | MRARIMSARNMSAGIVSAQIIARLASLVAGLRATFRQSRMRLRRRVAHHGLAAID |
| Ga0207687_110522022 | 3300025927 | Miscanthus Rhizosphere | MRAHIARAHVVVRLVSLVAGLRAAFGQSRMRLCRRLARHGLAAID |
| Ga0207644_112876472 | 3300025931 | Switchgrass Rhizosphere | RNMSAQIIARLASLVAGLRATFRRSRMRLRRRVAHHGLAAID |
| Ga0207690_101656054 | 3300025932 | Corn Rhizosphere | MSARNMSAGIVSAQIIARLASLVAGLRATFRRSRMRLRRRVAHHGLAAID |
| Ga0207690_102810431 | 3300025932 | Corn Rhizosphere | AMSARIMSARNMSAQIIARLASLVAGLRATFRRSRMRLRRRVAHHGLAAID |
| Ga0207691_101226324 | 3300025940 | Miscanthus Rhizosphere | MSARIMSARNMSAQIIARLASLVAGLRATFRRSRMRLRRRVAHHGLAAID |
| Ga0207711_106276191 | 3300025941 | Switchgrass Rhizosphere | MSAQIIARLASLVAGLRATFRRSRMRLRRRVAHHGLAAID |
| Ga0207689_104998211 | 3300025942 | Miscanthus Rhizosphere | RIMSAQIIARLASLVAGLRATFRRSRMRLRRRVAHHGLAAID |
| Ga0207651_104342963 | 3300025960 | Switchgrass Rhizosphere | PRPPACVRAGVGAQAMRARIMSARNMSAGIVSAQIIARLASLVAGLRATFRQSRMRLRRRVAHHGLAAID |
| Ga0207712_100078253 | 3300025961 | Switchgrass Rhizosphere | MSAGIVSAQIIARLASLVAGLRATFRRSRMRLRRRVAHHGLAAID |
| Ga0207658_101299621 | 3300025986 | Switchgrass Rhizosphere | QAMRARIMSARNMSAGIVSAQIIARLASLVAGLRATFRQSRMRLRRRVAHHGLAAID |
| Ga0207658_103997353 | 3300025986 | Switchgrass Rhizosphere | MRARIMSAGIVSAQIIARLASLVAGLRATFRQSRMRLRRRVAHHGL |
| Ga0207708_100020508 | 3300026075 | Corn, Switchgrass And Miscanthus Rhizosphere | MSARNMSARNMSAQIIARLASLVAGLRATFRQSRMRLRRRVAHHGLAAID |
| Ga0207702_123739902 | 3300026078 | Corn Rhizosphere | SAQIIARLASLVAGLRATFRQSRMRLRRRVAHHGLAAID |
| Ga0207641_100495955 | 3300026088 | Switchgrass Rhizosphere | MSARNMSAQIIARLASLVAGLRATFRRSRMRLRRRVAHHGLAAID |
| Ga0207674_109988681 | 3300026116 | Corn Rhizosphere | PPACVRAGVGAQAMRARIMSAGIVSAQIIARLASLVAGLRATFRQSRMRLRRRVAHHGLAAID |
| Ga0179593_11361753 | 3300026555 | Vadose Zone Soil | MRGRITSARIMTEHVMSAHFTARLASLMAGLRAAFRQSRMRLCRRLARHGLAAID |
| Ga0268264_100278315 | 3300028381 | Switchgrass Rhizosphere | MSARIMSARNMSAQIIARLASLVAGLRATFRQSRMRLRRRVAHHGLAAID |
| Ga0307311_101554712 | 3300028716 | Soil | MSAQIVNARIMSGHIVVLLVSLAAGLRAAFGRSRMRLCRRLAHHGLAAID |
| Ga0307297_103827352 | 3300028754 | Soil | MSSRNMSAGILSAHIIARLASLVAGVRAAFRQSRTRL |
| Ga0307306_100712882 | 3300028782 | Soil | MNTHVMSARSMSAHVVVRLVSLAAGLRATFRRSRMRLCRRAARHGLAAID |
| Ga0307310_100902672 | 3300028824 | Soil | MTSRNMKAHTMRAYIARAHIMSARSMSAHVVVRLVSLVAGLRAAFGQSRMRLCRRLARHGLAAID |
| Ga0307304_100543323 | 3300028885 | Soil | MSARIVARLASLAAGLRATFQQSRMRLCRRVARHGLAAID |
| Ga0307498_100009672 | 3300031170 | Soil | MSANNMSSRNVSSRNMSAGITSAHIVALLASPVARATFRQPRMRLCRRVAHHGLTAIG |
| Ga0307468_1017434492 | 3300031740 | Hardwood Forest Soil | MSSGIMGSRIMSARIMSARIARGHIVARLASLAAGLRAAFGQSHMRLCRRLARHGLAAID |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |