NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F090618

Metagenome / Metatranscriptome Family F090618

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F090618
Family Type Metagenome / Metatranscriptome
Number of Sequences 108
Average Sequence Length 50 residues
Representative Sequence MDNKDYKETLAKQEDLNWDGNTEQQQQEEIEYTYIVDEDRMEKLRKLIHDKS
Number of Associated Samples 79
Number of Associated Scaffolds 108

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 81.48 %
% of genes near scaffold ends (potentially truncated) 25.00 %
% of genes from short scaffolds (< 2000 bps) 78.70 %
Associated GOLD sequencing projects 66
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (45.370 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(29.630 % of family members)
Environment Ontology (ENVO) Unclassified
(65.741 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(82.407 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 67.31%    β-sheet: 1.92%    Coil/Unstructured: 30.77%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 108 Family Scaffolds
PF08291Peptidase_M15_3 31.48
PF03237Terminase_6N 25.00
PF02178AT_hook 10.19
PF12236Head-tail_con 4.63
PF13155Toprim_2 1.85
PF11753DUF3310 0.93



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms54.63 %
UnclassifiedrootN/A45.37 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000116|DelMOSpr2010_c10032908All Organisms → Viruses → Predicted Viral2405Open in IMG/M
3300000930|BpDRAFT_10268382Not Available512Open in IMG/M
3300001450|JGI24006J15134_10026995All Organisms → Viruses → Predicted Viral2565Open in IMG/M
3300001450|JGI24006J15134_10083556All Organisms → Viruses → Predicted Viral1188Open in IMG/M
3300001450|JGI24006J15134_10110937All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium966Open in IMG/M
3300001460|JGI24003J15210_10003921Not Available6417Open in IMG/M
3300001460|JGI24003J15210_10114115All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.748Open in IMG/M
3300001472|JGI24004J15324_10015199All Organisms → Viruses → Predicted Viral2691Open in IMG/M
3300003620|JGI26273J51734_10159838All Organisms → cellular organisms → Bacteria585Open in IMG/M
3300004448|Ga0065861_1000705All Organisms → Viruses → Predicted Viral4025Open in IMG/M
3300004448|Ga0065861_1005011Not Available897Open in IMG/M
3300004457|Ga0066224_1026550All Organisms → Viruses → Predicted Viral1306Open in IMG/M
3300005748|Ga0076925_1060804All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1092Open in IMG/M
3300006029|Ga0075466_1040473All Organisms → Viruses → Predicted Viral1412Open in IMG/M
3300006029|Ga0075466_1087252All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium862Open in IMG/M
3300006191|Ga0075447_10120660Not Available896Open in IMG/M
3300006420|Ga0082248_10071289Not Available736Open in IMG/M
3300006802|Ga0070749_10249062Not Available1006Open in IMG/M
3300006802|Ga0070749_10573400Not Available610Open in IMG/M
3300006803|Ga0075467_10258256Not Available942Open in IMG/M
3300006803|Ga0075467_10308057All Organisms → cellular organisms → Bacteria → Proteobacteria842Open in IMG/M
3300006810|Ga0070754_10076465All Organisms → Viruses → Predicted Viral1698Open in IMG/M
3300006810|Ga0070754_10137898All Organisms → Viruses → Predicted Viral1175Open in IMG/M
3300006919|Ga0070746_10134958All Organisms → Viruses → Predicted Viral1211Open in IMG/M
3300006920|Ga0070748_1155507Not Available849Open in IMG/M
3300006920|Ga0070748_1164712All Organisms → cellular organisms → Bacteria → Proteobacteria820Open in IMG/M
3300007229|Ga0075468_10114988Not Available840Open in IMG/M
3300007276|Ga0070747_1162495All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium799Open in IMG/M
3300007540|Ga0099847_1156317Not Available677Open in IMG/M
3300007540|Ga0099847_1190655Not Available600Open in IMG/M
3300007862|Ga0105737_1038670All Organisms → Viruses → Predicted Viral1140Open in IMG/M
3300007956|Ga0105741_1094359All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.732Open in IMG/M
3300007992|Ga0105748_10120019All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.1062Open in IMG/M
3300009002|Ga0102810_1009518All Organisms → Viruses → Predicted Viral3411Open in IMG/M
3300009436|Ga0115008_10359460All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.1033Open in IMG/M
3300009785|Ga0115001_10864902Not Available544Open in IMG/M
3300010392|Ga0118731_106632957Not Available633Open in IMG/M
3300010883|Ga0133547_11118087All Organisms → Viruses → Predicted Viral1513Open in IMG/M
3300010883|Ga0133547_12149673All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1015Open in IMG/M
3300011118|Ga0114922_10179304All Organisms → Viruses → Predicted Viral1792Open in IMG/M
3300011128|Ga0151669_160124Not Available698Open in IMG/M
3300011248|Ga0151670_1029349Not Available945Open in IMG/M
3300011252|Ga0151674_1015619Not Available1756Open in IMG/M
3300011253|Ga0151671_1012380Not Available4264Open in IMG/M
3300012524|Ga0129331_1001074Not Available501Open in IMG/M
3300013010|Ga0129327_10250292Not Available906Open in IMG/M
3300017697|Ga0180120_10039719All Organisms → Viruses → Predicted Viral2146Open in IMG/M
3300017697|Ga0180120_10195103Not Available841Open in IMG/M
3300017713|Ga0181391_1000365Not Available13572Open in IMG/M
3300017713|Ga0181391_1071914Not Available796Open in IMG/M
3300017743|Ga0181402_1031945All Organisms → Viruses → Predicted Viral1466Open in IMG/M
3300017749|Ga0181392_1016190All Organisms → Viruses → Predicted Viral2397Open in IMG/M
3300017758|Ga0181409_1089824Not Available921Open in IMG/M
3300017763|Ga0181410_1083441Not Available941Open in IMG/M
3300017786|Ga0181424_10003002Not Available7456Open in IMG/M
3300017786|Ga0181424_10006882Not Available4936Open in IMG/M
3300018642|Ga0188867_1000262All Organisms → Viruses → Predicted Viral1952Open in IMG/M
3300020347|Ga0211504_1005119All Organisms → Viruses → Predicted Viral4545Open in IMG/M
3300020438|Ga0211576_10139407All Organisms → Viruses → Predicted Viral1318Open in IMG/M
3300021371|Ga0213863_10099141All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1398Open in IMG/M
3300021378|Ga0213861_10096205All Organisms → cellular organisms → Bacteria1774Open in IMG/M
3300021957|Ga0222717_10005195Not Available9452Open in IMG/M
3300021957|Ga0222717_10075670All Organisms → Viruses → Predicted Viral2137Open in IMG/M
3300021957|Ga0222717_10079710All Organisms → Viruses → Predicted Viral2073Open in IMG/M
3300021957|Ga0222717_10253929All Organisms → Viruses → Predicted Viral1020Open in IMG/M
3300022061|Ga0212023_1017109All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium970Open in IMG/M
3300022072|Ga0196889_1040951Not Available916Open in IMG/M
3300022074|Ga0224906_1066125All Organisms → Viruses → Predicted Viral1122Open in IMG/M
3300022169|Ga0196903_1012392All Organisms → Viruses → Predicted Viral1052Open in IMG/M
3300022178|Ga0196887_1044683All Organisms → Viruses → Predicted Viral1158Open in IMG/M
3300022178|Ga0196887_1060022Not Available942Open in IMG/M
3300022178|Ga0196887_1068941Not Available854Open in IMG/M
3300022178|Ga0196887_1070075Not Available844Open in IMG/M
3300022206|Ga0224499_10337439All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.509Open in IMG/M
(restricted) 3300023109|Ga0233432_10053626All Organisms → Viruses → Predicted Viral2524Open in IMG/M
3300024346|Ga0244775_10401868All Organisms → Viruses → Predicted Viral1127Open in IMG/M
(restricted) 3300024518|Ga0255048_10049440All Organisms → Viruses → Predicted Viral2111Open in IMG/M
3300025120|Ga0209535_1204029Not Available552Open in IMG/M
3300025137|Ga0209336_10032406All Organisms → Viruses → Predicted Viral1744Open in IMG/M
3300025137|Ga0209336_10148781All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.620Open in IMG/M
3300025168|Ga0209337_1057595All Organisms → Viruses → Predicted Viral1979Open in IMG/M
3300025168|Ga0209337_1154603All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium988Open in IMG/M
3300025266|Ga0208032_1006845All Organisms → Viruses → Predicted Viral3909Open in IMG/M
3300025508|Ga0208148_1000792Not Available11912Open in IMG/M
3300025543|Ga0208303_1007499Not Available3556Open in IMG/M
3300025652|Ga0208134_1074811Not Available996Open in IMG/M
3300025652|Ga0208134_1162258Not Available552Open in IMG/M
3300025652|Ga0208134_1167941Not Available537Open in IMG/M
3300025806|Ga0208545_1097068Not Available777Open in IMG/M
3300025806|Ga0208545_1126484Not Available636Open in IMG/M
3300025853|Ga0208645_1098489All Organisms → Viruses → Predicted Viral1217Open in IMG/M
3300027833|Ga0209092_10680827Not Available507Open in IMG/M
3300028125|Ga0256368_1013363All Organisms → Viruses → Predicted Viral1408Open in IMG/M
3300028125|Ga0256368_1075139Not Available577Open in IMG/M
3300028137|Ga0256412_1387171All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium513Open in IMG/M
3300028287|Ga0257126_1238115All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.547Open in IMG/M
3300031519|Ga0307488_10012187Not Available6968Open in IMG/M
3300031519|Ga0307488_10249120All Organisms → Viruses → Predicted Viral1172Open in IMG/M
3300031519|Ga0307488_10401748Not Available847Open in IMG/M
3300031519|Ga0307488_10584037Not Available651Open in IMG/M
3300031569|Ga0307489_10422079Not Available892Open in IMG/M
3300031597|Ga0302116_1104041Not Available935Open in IMG/M
3300031621|Ga0302114_10150653All Organisms → Viruses → Predicted Viral1021Open in IMG/M
3300031622|Ga0302126_10097985All Organisms → Viruses → Predicted Viral1147Open in IMG/M
3300031766|Ga0315322_10015534Not Available5712Open in IMG/M
3300032254|Ga0316208_1141239Not Available551Open in IMG/M
3300033742|Ga0314858_048009All Organisms → Viruses → Predicted Viral1028Open in IMG/M
3300034375|Ga0348336_069130All Organisms → Viruses → Predicted Viral1335Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous29.63%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine17.59%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater8.33%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine4.63%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine3.70%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water3.70%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater2.78%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient2.78%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine2.78%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water2.78%
Sea-Ice BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine2.78%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine2.78%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.85%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake0.93%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean0.93%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface0.93%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine0.93%
MarineEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine0.93%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat0.93%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.93%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater0.93%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine0.93%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine0.93%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine0.93%
SedimentEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Sediment0.93%
Freshwater And MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine0.93%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine0.93%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment0.93%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000930Marine microbial communities from the coastal margin of the Columbia River, USA - 33 PSU, 16mEnvironmentalOpen in IMG/M
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300001460Marine viral communities from the Pacific Ocean - LP-28EnvironmentalOpen in IMG/M
3300001472Marine viral communities from the Pacific Ocean - LP-32EnvironmentalOpen in IMG/M
3300003620Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNAEnvironmentalOpen in IMG/M
3300004448Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300004457Marine viral communities from Newfoundland, Canada MC-1EnvironmentalOpen in IMG/M
3300005748Seawater microbial communities from Vineyard Sound, MA, USA - control T7EnvironmentalOpen in IMG/M
3300006029Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNAEnvironmentalOpen in IMG/M
3300006191Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNAEnvironmentalOpen in IMG/M
3300006420Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten IVEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006803Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNAEnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300007229Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300007276Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31EnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007862Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373A_0.2umEnvironmentalOpen in IMG/M
3300007956Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459A_0.2umEnvironmentalOpen in IMG/M
3300007992Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2umEnvironmentalOpen in IMG/M
3300009002Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.573EnvironmentalOpen in IMG/M
3300009436Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M MetagenomeEnvironmentalOpen in IMG/M
3300009785Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130EnvironmentalOpen in IMG/M
3300010392Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385EnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300011118Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaGEnvironmentalOpen in IMG/M
3300011128Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, 0.02EnvironmentalOpen in IMG/M
3300011248Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, 0.2EnvironmentalOpen in IMG/M
3300011252Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, permeateEnvironmentalOpen in IMG/M
3300011253Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeateEnvironmentalOpen in IMG/M
3300012524Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013010Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNAEnvironmentalOpen in IMG/M
3300017697Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)EnvironmentalOpen in IMG/M
3300017713Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11EnvironmentalOpen in IMG/M
3300017743Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17EnvironmentalOpen in IMG/M
3300017749Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15EnvironmentalOpen in IMG/M
3300017758Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 32 SPOT_SRF_2012-05-30EnvironmentalOpen in IMG/M
3300017763Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20EnvironmentalOpen in IMG/M
3300017786Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18EnvironmentalOpen in IMG/M
3300018642Metatranscriptome of marine microbial communities from Baltic Sea - GS695_0p1EnvironmentalOpen in IMG/M
3300020347Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)EnvironmentalOpen in IMG/M
3300020438Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)EnvironmentalOpen in IMG/M
3300021371Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497EnvironmentalOpen in IMG/M
3300021378Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300022061Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2)EnvironmentalOpen in IMG/M
3300022072Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)EnvironmentalOpen in IMG/M
3300022074Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)EnvironmentalOpen in IMG/M
3300022169Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022178Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)EnvironmentalOpen in IMG/M
3300022206Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_24EnvironmentalOpen in IMG/M
3300023109 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MGEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300024518 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2EnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025137Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)EnvironmentalOpen in IMG/M
3300025168Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)EnvironmentalOpen in IMG/M
3300025266Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes)EnvironmentalOpen in IMG/M
3300025508Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025543Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025652Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)EnvironmentalOpen in IMG/M
3300025806Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025853Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)EnvironmentalOpen in IMG/M
3300027833Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300028125Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SBEnvironmentalOpen in IMG/M
3300028137Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - WCR_74 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028287Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_120mEnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031569Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 1.2EnvironmentalOpen in IMG/M
3300031597Marine microbial communities from Western Arctic Ocean, Canada - AG5_SCMEnvironmentalOpen in IMG/M
3300031621Marine microbial communities from Western Arctic Ocean, Canada - AG5_SurfaceEnvironmentalOpen in IMG/M
3300031622Marine microbial communities from Western Arctic Ocean, Canada - CB4_20mEnvironmentalOpen in IMG/M
3300031766Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515EnvironmentalOpen in IMG/M
3300032254Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month chalcopyriteEnvironmentalOpen in IMG/M
3300033742Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawaterEnvironmentalOpen in IMG/M
3300034375Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSpr2010_1003290833300000116MarineMDNKDYKETLAKQEDLNWDGNTEQQQQEEIEYTYIVDEDRMEKLKKLIHDKS*
BpDRAFT_1026838213300000930Freshwater And MarineMDNKDYKETLAKQEDLNWDGNIEPQEPTEYTIVVDEDRMEQLRKIIHDKS*
JGI24006J15134_1002699553300001450MarineMDNKDYKETLAKQEDLNWDGNTEPEQVEVEYTYIVDEDRMEKLRKLIHDKS*
JGI24006J15134_1008355623300001450MarineMDNKDYKETLAKQEDLNWDGNIEQEQIEYTYVVDEDSMEKLKKLLNDKS*
JGI24006J15134_1011093713300001450MarineMGNKEYKETLAKQEDLNWDGNIEPQESTTEYTIVVDEDRMEQLRKLI
JGI24003J15210_10003921113300001460MarineMGNKEYKETLAKQEDLNWDGNIEPQESTTEYTIVVDEDRMEQLRKLIHDKS*
JGI24003J15210_1011411523300001460MarineMDNKEYRETLAKQEDLNWDGNIEPQDTTATEYTIVVDEDQMEQLRKLIHDKS*
JGI24004J15324_1001519933300001472MarineMGNKEYKETLAKQEDLNWDGNIEPQESTTEYTIVVDKDRMEQLRKLINDKS*
JGI26273J51734_1015983823300003620MarineMDNKDYKXTLAKQEDLNWDGNTEPEQVEVXYTYVVDEDRMEKLRKLIHDKS*
Ga0065861_100070543300004448MarineMDNKEYRETLAKQEDLNWDGNIEQQEEIEYTYIVDEDRMEKLRKLRKLIHDKS*
Ga0065861_100501123300004448MarineMDNKNYKETLAKQEDLNWDGNTEQQQQEEIEYTYIVDEDRMEKLKKLIHDKS*
Ga0066224_102655013300004457MarineMDNKEYRETLAKQEDLNWDGNIEQQEEIEYTYIVDEDRMEKLRK
Ga0076925_106080413300005748MarineMDNKNYKETLAKQEDLNWDGNTEQQQQEEIEYTYIVDEDRMEKLKKLIHD
Ga0075466_104047323300006029AqueousMDNKNYKETLAKQEDLNWDGNTEQQQQEEIEYTYIVDEDRMEKLKKLIHDK*
Ga0075466_108725233300006029AqueousMDNKNYKETLAKQEDLNWDGNTEQQQEQEEIEYTYIVDEDRMEKLKKLIHDKS*
Ga0075447_1012066023300006191MarineMDNKEYKETLAKQEDLNWDGNTEPAVEHVYVVNKDNMEKLKKLIHDKP*
Ga0082248_1007128933300006420SedimentMDNKDYKETLAKQEDLNWDGNTEQEEIEYTYIVDEDRMEKLR
Ga0070749_1024906213300006802AqueousMGNKEYKETLAKQEDLNWDGNTETQDSTTEYTIVVDEDRMEQLRKLINDKS*
Ga0070749_1057340033300006802AqueousMDNKDYKETLAKQEDLNWDGNTEQQQEEEIEYTYIVDEDRMEKLRKLIHYKS*
Ga0075467_1025825633300006803AqueousMDNKNYKETLAKQEDLNWDGNNEQQQEEIEYTYIVDEDRMEKLKKLIHDKS*
Ga0075467_1030805713300006803AqueousMDNKNYKETLAKQEDLNWDGNTEQQQQQQEEIEYTYIVDEDRMEKLKKLIHDK*
Ga0070754_1007646523300006810AqueousMDNKEYRETLAKQEDLNWDGNIEPQDSTAEYTIVVDEDRMEQLRKLIHDKS*
Ga0070754_1013789833300006810AqueousMDNKDYKETLAKQEDLNWDGNTEQQQEEEIEYTYIVDEDRMEKLRKLIHDKS*
Ga0070746_1013495843300006919AqueousMDNKEYRETLAKQEDLNWDGNIEPQESTEYTIHVDKEQMEQLRKLINDKS*
Ga0070748_115550733300006920AqueousNKNYKETLAKQEDLNWDGNTEQQQQEEIEYTYIVDEDRMEKLKKLIHDK*
Ga0070748_116471213300006920AqueousMGNKEYKETLAKQEDLNWDGNTEQQQEEIEYTYIVDEDRMEKLKKLIHDK*
Ga0075468_1011498813300007229AqueousKNYKETLAKQEDLNWDGNTEQQQQEEIEYTYIVDEDRMEKLKKLIHDK*
Ga0070747_116249533300007276AqueousMDNKNYKETLAKQEDLNWDGNTEQQQQQEEIEYTYIVDEDRMEKLKKLIHDK*
Ga0099847_115631713300007540AqueousKETLAKQEDLNWDGNTEQQQQEEIEYTYIVDEDRMEKLKKLIHDK*
Ga0099847_119065523300007540AqueousMDNKNYKETLAKQEDLNWDGNTEQQQEEIEYTYIVDEDRMEKLRKLIHDKS*
Ga0105737_103867023300007862Estuary WaterMDNKEYRETLAKQEDLNWDGNIEPQDPTATEYTIHVDKDQMEQLRKLIHDKS*
Ga0105741_109435923300007956Estuary WaterMDNKEYRETLAKQEDLNWDGNTEPQDPTATEYTIHVDKDQMEQLRKLIHDKS*
Ga0105748_1012001923300007992Estuary WaterMDNKDYKETLAKQEDLNWDGNTEPEQVEVEYTYVVDEDRMEKLRKLIHDKS*
Ga0102810_100951843300009002EstuarineMDNKEYRETLAKQEDLNWDGNIEPQEPAAAEYTIVVDEDQMEQLRKLIHDKS*
Ga0115008_1035946023300009436MarineMDNKDYKETLAKQEDLNWDGNTEQQQQQEEIEYTYIVDEDRMEKLKKLIHDKS*
Ga0115001_1086490223300009785MarineMDNKDYKETLAKQEDLNWDGNTEPQEPAAEYKIHVDKDRMEQLRQVLHRLKSNT*
Ga0118731_10663295723300010392MarineMDNKEYRETLAKQEDLNWDGNIEPQDPTAEYTIVVDEDRMEKLRKLIHDKS*
Ga0133547_1111808713300010883MarineMDNKDYKETLAKQEDLNWDGNTEQEQIEYTYIVDEDRMEKLKKLLND*
Ga0133547_1214967333300010883MarineMDNKDYKETLAKQEDLNWDGNTEQEQIEYTYIVDEDSIEKL
Ga0114922_1017930423300011118Deep SubsurfaceMDNKDYKETLAKQEDLNWDGNTEQQQQQEEIEYTYIVDEDRMEKLRKLIHDKS*
Ga0151669_16012423300011128MarineMDNKNYKETLAKQEDLNWDGNTEPEQQEEIEFTYIVDEDRMEKLRKLIHDK*
Ga0151670_102934923300011248MarineMDNKNYKETLAKQSDLNWDGNTEPAQQEEIEFTYIVDEDRMEKLRKLIHDKS*
Ga0151674_101561933300011252MarineMDNKNYKETLAKQSDLNWDGNTDSAQQEEIEFTYIVDEDRMEKLRKLIHDK*
Ga0151671_101238073300011253MarineMDNKNYKETLAKQSDLNWDGNTEPAQQEEIEFTYIVDEDRMEKLRKLIHDK*
Ga0129331_100107423300012524AqueousMDNKEYRETLAKQEDLNWDGNIEPQEEIEYTYIVDEDQMEKLRKLIHDKS*
Ga0129327_1025029213300013010Freshwater To Marine Saline GradientMDNKNYKETLAKQEDLNWDGNTEQQQEQEEIEYTYIVDEDRMEKLRKLIHDKP*
Ga0180120_1003971923300017697Freshwater To Marine Saline GradientMDNKEYRETLAKQEDLNWDGNIEPQEEIEYTYIVDEDQMEKLRKLIHDKS
Ga0180120_1019510313300017697Freshwater To Marine Saline GradientKNYKETLAKQEDLNWDGNTEQQQQEEIEYTYIVDEDRMEKLKKLIHDK
Ga0181391_100036543300017713SeawaterMDNKEYRETLAKQEDLNWDGNIEPQDPTATEYTIHVDKDQMEQLRKLIHDKS
Ga0181391_107191413300017713SeawaterMDNKDYKETLAKQEDLNWDGNTEPEQVEVEYTYVV
Ga0181402_103194523300017743SeawaterMDNKDYKETLAKQEDLNWDGNIEPQEPSTAEYTIVVDEDRMEQLRKLIHDKS
Ga0181392_101619043300017749SeawaterETLAKQEDLNWDGNIEPQDTTATEYTIVVDKDQMEQLRKLIHDKS
Ga0181409_108982413300017758SeawaterCGLMDNKEYRETLAKQEDLNWDGNIEPQDPTATEYTIHVDKDQMEQLRKLIHDKS
Ga0181410_108344123300017763SeawaterGLMGNKEYKETLAKQEDLNWDGNIEPQESTTEYTIVVDEDRMEQLRKLIHDKS
Ga0181424_10003002133300017786SeawaterMGNKEYKETLAKQEDLNWDGNIEPQESTTEYTIVVDEDRMEQLKKLIHDKS
Ga0181424_1000688223300017786SeawaterMDNKDYKETLAKQEDLNWDGNIEPQEPTEYTIVVDEDKMEQLRKLIHDKS
Ga0188867_100026213300018642Freshwater LakeMDNKDYKETLAKQEDLNWDGNTEPEQVEVEYTYIVDEDRMEKLRKLIHDKS
Ga0211504_100511933300020347MarineMDNKEYRETLAKQEDLNWDGNIEPQDPTTEYTIVVDKEQMEQLRKLIHDKS
Ga0211576_1013940723300020438MarineMDNKDYKETLAKQEDLNWDGNIEPQDSTAEYTIVVDEDRMEQLRKLIHDKS
Ga0213863_1009914143300021371SeawaterMDNKNYKETLAKQEDLNWDGNTEQQQKEELEYTYVVDEDRMEKIRKLIYGKS
Ga0213861_1009620543300021378SeawaterMDNKNYKETLAKQEDLNWDGNTEQQQKEELEYTYVVDEDRMEKIRKLIYGK
Ga0222717_10005195183300021957Estuarine WaterMDNKDYKETLAKQEDLNWDGNTEPEQVEVEYTYVVDEDRMEKLRKLIHDKS
Ga0222717_1007567033300021957Estuarine WaterMDNKDYKETLAKQEDLNWDGNIEPEQVEVEYTYVVDEDRMEKLRKLIHDK
Ga0222717_1007971023300021957Estuarine WaterMGNKEYKETLAKQEDLNWDGNIEPQESTTEYTIVVDEDRMEQLRKLIHDKS
Ga0222717_1025392933300021957Estuarine WaterCGPMDNKEYKETLAKQEDLNWDGNTEPEQVEVEYTYIVDEDRMEKLRKLIHDKS
Ga0212023_101710923300022061AqueousMDNKNYKETLAKQEDLNWDGNTEQQQQEEIEYTYIVDEDRMEKLKKLIHDK
Ga0196889_104095133300022072AqueousMDNKNYKETLAKQEDLNWDGNTEQQQQEEIEYTYIVDEDRMEKLKKLIHDKS
Ga0224906_106612523300022074SeawaterMDNKEYRETLAKQEDLNWDGNIEPQDPTATEYTIVVDKDQMEQLRKLIHDKS
Ga0196903_101239233300022169AqueousMDNKNYKETLAKQEDLNWDGNTEQQQEEIEYTYIVDEDRMEKLKKLIHDKS
Ga0196887_104468323300022178AqueousMDNKEYRETLAKQEDLNWDGNIEPQESTEYTIHVDEDQMEQLRKLINDKS
Ga0196887_106002213300022178AqueousMDNKNYKETLAKQEDLNWDGNTEQQQEQEEIEYTYIVDEDRMEKLKKLIHDKS
Ga0196887_106894133300022178AqueousDNKNYKETLAKQEDLNWDGNTEQQQQEEIEYTYIVDEDRMEKLKKLIHDK
Ga0196887_107007513300022178AqueousMGNKEYKETLAKQEDLNWDGNTEQQQEEIEYTYIVDEDRMEKLKKLIHDK
Ga0224499_1033743923300022206SedimentMDNKEYRETLAKQEDLNWDGNIEPQDSTAEYTIVVDEDRMEQLRKLIHDKS
(restricted) Ga0233432_1005362613300023109SeawaterMDNKDYKETLAKQEDLNWDGNTEPEQVEVEYTYVVDEDRMEKLRKLIHDK
Ga0244775_1040186823300024346EstuarineMGNKEYKETLAKQEDLNWDGNTEPEQVEVEYTYVVDEDRMEKLRKLIHDKS
(restricted) Ga0255048_1004944043300024518SeawaterMDNKDYKETLAKQEDLNWDGNIEQQDSTAEYTIVVDEDRMEQLRKLIHDKS
Ga0209535_120402923300025120MarineMDNKEYRETLAKQEDLNWDGNIEPQDTTATEYTIVVDEDQMEQLRKLIHDKS
Ga0209336_1003240623300025137MarineMGNKEYKETLAKQEDLNWDGNIEPQESTTEYTIVVDKDRMEQLRKLINDKS
Ga0209336_1014878123300025137MarineMDNKEYRETLAKQEDLNWDGNIEPQDSTAEYTIHVDKDQMEQLRKLIHDKS
Ga0209337_105759513300025168MarineMDNKDYKETLAKQEDLNWDGNTEQEQIEVEYTYVVYE
Ga0209337_115460333300025168MarineMGNKEYKETLAKQEDLNWDGNIEPQESTTEYTIVVDEDRMEQLRKLINDK
Ga0208032_100684533300025266Deep OceanMDNKEYKETLAKQEDLNWDGNTEPAVEHVYVVNKDNMEKLKKLIHDKP
Ga0208148_100079223300025508AqueousMGNKEYKETLAKQEDLNWDGNTETQDSTTEYTIVVDEDRMEQLRKLINDKS
Ga0208303_100749973300025543AqueousMDNKNYKETLAKQEDLNWDGNTEQQQEQEEIEYTYIVDEDRMEKLRKLIHDKP
Ga0208134_107481123300025652AqueousKEYRETLAKQEDLNWDGNIEPQDPTTEYTIVVDEDRMEQLRKLINDKS
Ga0208134_116225833300025652AqueousMDNKEYRETLAKQEDLNWDGNIEPQEPTTEYTIVVDEDRME
Ga0208134_116794113300025652AqueousPMDNKNYKETLAKQEDLNWDGNTEQQQQQEEIEYTYIVDEDRMEKLKKLIHDK
Ga0208545_109706833300025806AqueousNKNYKETLAKQEDLNWDGNTEQQQQQEEIEYTYIVDEDRMEKLKKLIHDK
Ga0208545_112648413300025806AqueousMDNKEYRETLAKQEDLNWDGNIEPQESTEYTIHVDEDQMEQL
Ga0208645_109848933300025853AqueousMDNKDYKETLAKQEDLNWDGNTEQQQEEEIEYTYIVDEDRMEKLRKLIHDKS
Ga0209092_1068082723300027833MarineMDNKDYKETLAKQEDLNWDGNTEQQQQQEEIEYTYIVDEDRMEKLKKLIHDKS
Ga0256368_101336333300028125Sea-Ice BrineMDNKDYKETLAKQEDLNWDGNTEPEQVEVEYTYIVDKDSMEKLRKLIHDKS
Ga0256368_107513923300028125Sea-Ice BrineMDNKDYKETLAKQEDLNWDGNTEPQEPSDEYTIHVDKDRMEQLRQVLHRLKSNT
Ga0256412_138717123300028137SeawaterMDNKEYRETLAKQEDLNWDGNIEPQEPSAAEYTIVVDEDRMEQLRKLIHDKS
Ga0257126_123811513300028287MarineMDNKDYKETLAKQEDLNWDGNIEPQEPAAAEYTIVVDEDRMEQLRKLIHDKS
Ga0307488_1001218773300031519Sackhole BrineMDNKDYKETLAKQEDLNWDGNTEPQEPAAAEYTIHVDKDRMEQLRQVLHRLKSNT
Ga0307488_1024912023300031519Sackhole BrineMDNKDYKETLAKQEDLNWDGNTEPEQEEIEYTYIVDEDRMEKLRKLIHDKS
Ga0307488_1040174833300031519Sackhole BrineMDNKDYKETLAKQEDLNWDGNIKPQDSTAEYTIVVDEDRMEKLRKLIHDKS
Ga0307488_1058403733300031519Sackhole BrineMDNKDYKETLAKQEDLNWDGNTEPVQQEEIEYTYVVDE
Ga0307489_1042207913300031569Sackhole BrineMDNKDYKETLAKQEDLNWDGNTEPQEPAAAEYTIHVDKDRMEKLRQVLHRLKSNT
Ga0302116_110404123300031597MarineMDNKDYKETLAKQEDLNWDGNTEQEQIEYTYIVDEDSIEKLKKLLHD
Ga0302114_1015065323300031621MarineDYKETLAKQEDLNWDGNTEQEQIEYTYIVDEDSIEKLKNLLND
Ga0302126_1009798523300031622MarineMDNKDYKETLAKQEDLNWDGNTEQEQIEYTYIVDEDRMEKLKKLLND
Ga0315322_1001553433300031766SeawaterMGNKEYKETLAKQEDLNWDGNIEPQESTTEYTIVVDEDKMEQLRKLIHDKS
Ga0316208_114123923300032254Microbial MatMDNKEYRETLAKQEDLNWDGNIEPQEPAAEYTIVVDEDRMEQLRKLINDKS
Ga0314858_048009_3_1163300033742Sea-Ice BrineMDNKDYKETLAKQEDLNWDGNIKPQDSTAEYTIVVDED
Ga0348336_069130_572_7303300034375AqueousMDNKDYKETLAKQEDLNWDGNTEQQQQEEIEYTYIVDEDRMEKLRKLIHDKS


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