Metagenome / Metatranscriptome Family F090595

Overview

Basic Information

• Family ID: F090595
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 108
• Average Sequence Length: 48 residues
• Representative Sequence: MFKLDHKLAPDEFIQTFFEVNRQDHQRPPHPWEALFREGKCTREQLQGWAKE
• Number of Associated Samples: 101
• Number of Associated Scaffolds: 108

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 98.15 %
• % of genes near scaffold ends (potentially truncated): 91.67 %
• % of genes from short scaffolds (< 2000 bps): 94.44 %
• Associated GOLD sequencing projects: 97
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (98.148 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (13.889 % of family members)
• Environment Ontology (ENVO): Unclassified (31.481 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (36.111 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 35.00%
  β-sheet: 0.00%
  Coil/Unstructured: 65.00%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF07883	Cupin_2	81.48
PF02887	PK_C	4.63
PF09084	NMT1	0.93
PF04359	DUF493	0.93
PF05598	DUF772	0.93
PF07394	DUF1501	0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	4.63
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.93
COG2921	Putative lipoate-binding regulatory protein, UPF0250 family	Signal transduction mechanisms [T]	0.93
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.93

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.15 %
Unclassified	root	N/A	1.85 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.15 %
Unclassified	root	N/A	1.85 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.15 %
Unclassified	root	N/A	1.85 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	79.63 %
Unclassified	root	N/A	1.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Level 5

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	78.70 %
Unclassified	root	N/A	1.85 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %

Level 6

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	78.70 %
Unclassified	root	N/A	1.85 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.93 %

Level 7

Name	Rank	Taxonomy	Distribution
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	78.70 %
Unclassified	root	N/A	1.85 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %

Level 8

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	78.70 %
Unclassified	root	N/A	1.85 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2140918013|NODE_251612_length_1960_cov_7.995408	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1992
2162886007|SwRhRL2b_contig_1187219	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	876
2170459010|GIO7OMY01C41FW	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	505
2199352025|deepsgr__Contig_80163	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	572
3300000793|AF_2010_repII_A001DRAFT_10093955	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	635
3300000881|JGI10215J12807_1564276	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	620
3300000890|JGI11643J12802_11169313	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	915
3300000891|JGI10214J12806_12080048	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	531
3300001431|F14TB_100044783	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	781
3300003999|Ga0055469_10122680	All Organisms → cellular organisms → Bacteria	767
3300004070|Ga0055488_10026825	All Organisms → cellular organisms → Bacteria	1119
3300004480|Ga0062592_100410544	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1081
3300004643|Ga0062591_100346183	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1198
3300005186|Ga0066676_10275331	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1106
3300005336|Ga0070680_101162295	All Organisms → cellular organisms → Bacteria	667
3300005339|Ga0070660_100098944	All Organisms → cellular organisms → Bacteria	2309
3300005356|Ga0070674_100340995	All Organisms → cellular organisms → Bacteria	1207
3300005445|Ga0070708_100696245	All Organisms → cellular organisms → Bacteria	957
3300005446|Ga0066686_10619980	All Organisms → cellular organisms → Bacteria → Proteobacteria	735
3300005536|Ga0070697_101909458	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	531
3300005713|Ga0066905_100564977	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	957
3300006049|Ga0075417_10365862	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	709
3300006196|Ga0075422_10250781	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	744
3300006804|Ga0079221_10044835	All Organisms → cellular organisms → Bacteria	1953
3300006846|Ga0075430_101011881	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	685
3300006846|Ga0075430_101476775	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	559
3300006846|Ga0075430_101746031	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	510
3300006847|Ga0075431_101436190	All Organisms → cellular organisms → Bacteria	649
3300006853|Ga0075420_101737875	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	534
3300006854|Ga0075425_100727447	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1139
3300006854|Ga0075425_101414710	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	787
3300006871|Ga0075434_102559829	All Organisms → cellular organisms → Bacteria	511
3300006881|Ga0068865_100315809	All Organisms → cellular organisms → Bacteria	1255
3300007076|Ga0075435_101759764	All Organisms → cellular organisms → Bacteria	544
3300007255|Ga0099791_10596335	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	540
3300009094|Ga0111539_10150047	All Organisms → cellular organisms → Bacteria	2729
3300009146|Ga0105091_10704654	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	529
3300009147|Ga0114129_10825128	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1181
3300009148|Ga0105243_10628081	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1038
3300009156|Ga0111538_10982573	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1068
3300009168|Ga0105104_10355937	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	810
3300009678|Ga0105252_10298426	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	718
3300009816|Ga0105076_1117985	Not Available	526
3300010043|Ga0126380_10487533	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	942
3300010046|Ga0126384_11551904	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	622
3300010047|Ga0126382_10372703	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1103
3300010047|Ga0126382_11529939	All Organisms → cellular organisms → Bacteria	615
3300010359|Ga0126376_10051881	All Organisms → cellular organisms → Bacteria	2906
3300010359|Ga0126376_11260343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	757
3300010359|Ga0126376_13077500	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	516
3300010373|Ga0134128_11552847	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	729
3300010376|Ga0126381_103611506	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	606
3300010398|Ga0126383_10603278	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1169
3300010403|Ga0134123_11762677	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	672
3300011119|Ga0105246_10516947	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1017
3300011397|Ga0137444_1063455	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	577
3300011412|Ga0137424_1052940	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	747
3300011422|Ga0137425_1177788	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	532
3300011444|Ga0137463_1302326	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	585
3300011445|Ga0137427_10166368	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	911
3300012041|Ga0137430_1030330	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1424
3300012355|Ga0137369_10674182	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	713
3300012360|Ga0137375_11187465	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	585
3300012532|Ga0137373_10727107	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	738
3300012915|Ga0157302_10059360	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1105
3300012925|Ga0137419_10258918	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1314
3300013296|Ga0157374_12385455	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	556
3300014154|Ga0134075_10142394	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1023
3300014300|Ga0075321_1054633	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	718
3300015256|Ga0180073_1047350	All Organisms → cellular organisms → Bacteria	871
3300016404|Ga0182037_10178891	All Organisms → cellular organisms → Bacteria	1626
3300018063|Ga0184637_10465919	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	741
3300018072|Ga0184635_10291844	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	641
3300018075|Ga0184632_10344957	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	638
3300018422|Ga0190265_11230754	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	867
3300018422|Ga0190265_13212300	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	545
3300018429|Ga0190272_10039606	All Organisms → cellular organisms → Bacteria	2637
3300019228|Ga0180119_1283288	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1175
3300019377|Ga0190264_10705566	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	746
3300021080|Ga0210382_10367454	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	636
3300021344|Ga0193719_10248048	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	753
3300021560|Ga0126371_13312125	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	544
3300022563|Ga0212128_10818901	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	552
3300023064|Ga0247801_1063185	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	583
3300025903|Ga0207680_10528603	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	841
3300025920|Ga0207649_11265098	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	583
3300025959|Ga0210116_1015583	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1395
3300025988|Ga0208141_1028238	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	536
3300026089|Ga0207648_11559942	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	621
3300026118|Ga0207675_102265064	Not Available	557
3300026324|Ga0209470_1178404	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	919
3300027006|Ga0209896_1037730	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	555
3300027873|Ga0209814_10300537	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	699
3300027874|Ga0209465_10028660	All Organisms → cellular organisms → Bacteria	2612
3300028381|Ga0268264_11253508	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	751
3300028803|Ga0307281_10125526	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	883
3300030606|Ga0299906_11097094	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	578
3300031455|Ga0307505_10395899	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	657
3300031740|Ga0307468_100015065	All Organisms → cellular organisms → Bacteria	3207
3300031854|Ga0310904_10891216	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	628
3300031965|Ga0326597_11099567	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	794
3300032001|Ga0306922_10381118	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1512
3300032005|Ga0307411_10612915	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	937
3300032163|Ga0315281_10698963	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1056
3300033487|Ga0316630_10186872	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1507
3300034115|Ga0364945_0264627	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	532
3300034177|Ga0364932_0045723	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1648
3300034178|Ga0364934_0239133	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	688

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	74.07%
Host-Associated	Host-Associated	25.93%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	55.56%
Plants	Host-Associated → Plants	25.93%
Aquatic	Environmental → Aquatic	18.52%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	52.78%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.30%
Sediment	Environmental → Aquatic → Sediment	10.19%
Freshwater	Environmental → Aquatic → Freshwater	4.63%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.63%
Marine	Environmental → Aquatic → Marine	2.78%
Floodplain	Environmental → Terrestrial → Floodplain	2.78%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.93%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.19%
Loam	Environmental → Terrestrial → Soil → Loam	5.56%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.70%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.70%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.70%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.78%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.78%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	2.78%
Sand	Environmental → Terrestrial → Soil → Sand	1.85%
Lake	Environmental → Aquatic → Freshwater → Lake	0.93%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.19%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.41%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.70%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.70%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.70%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.78%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.78%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	2.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.85%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.85%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.93%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	0.93%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%

Habitat

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	13.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.26%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.26%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	7.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.48%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.63%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.78%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.78%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	2.78%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.85%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.85%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.85%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.93%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.93%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.93%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental
2162886007	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental
3300000881	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil	Environmental
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental
3300003999	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2	Environmental
3300004070	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D2	Environmental
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental
3300009816	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10	Environmental
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated
3300011397	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT319_2	Environmental
3300011412	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT620_2	Environmental
3300011422	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT640_2	Environmental
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental
3300011445	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2	Environmental
3300012041	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT754_2	Environmental
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental
3300014300	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D1	Environmental
3300015256	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT333_16_10D	Environmental
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental
3300019228	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT790_16_1Ra (Metagenome Metatranscriptome)	Environmental
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental
3300022563	OV2_combined assembly	Environmental
3300023064	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S001-104B-6	Environmental
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated
3300025959	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2 (SPAdes)	Environmental
3300025988	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_101 (SPAdes)	Environmental
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental
3300027006	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30 (SPAdes)	Environmental
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental
3300030606	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125	Environmental
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental
3300034177	Sediment microbial communities from East River floodplain, Colorado, United States - 17_j17	Environmental
3300034178	Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_02819360	2140918013	Soil	MFKLDHKLAPDEFIGTFFEANRQDHQRPPHPWEAIFREGKATRDQLHGWGKER
SwRhRL2b_0607.00001970	2162886007	Switchgrass Rhizosphere	MYKLDHILSPDEFIQTFSEVNKSDHQRPPHPWETLFREGKCSRE
F62_06149260	2170459010	Grass Soil	MFKIDHKLSPDEFIQTFFEANKSDHQTPPHPWEILFRGGNC
deepsgr_01145150	2199352025	Soil	MFKIDHKLSPDGFIQTFFEANKSDHQRPPHPWEILFRRELLG
AF_2010_repII_A001DRAFT_100939551	3300000793	Forest Soil	VFKLDRKLDPDEFIQTFSEVNKNDHQRPPHPWETLF
JGI10215J12807_15642761	3300000881	Soil	MFSLDRKLKPDEFIETFFAVNKQDHQRPPHPWEAIFREG
JGI11643J12802_111693132	3300000890	Soil	MFKLDHKLAPDEFIGTFFEANRQDHQRPPHPWEAIFREG
JGI10214J12806_120800482	3300000891	Soil	MFKLDRKLLPDEFIQTFFEANRQDHHRPPHPWEAIFRE
F14TB_1000447832	3300001431	Soil	MYKLDHILSPDEFIQTFSEVNKSDHQRPPHPWETLFRGGKCTRDQLQGWAKERYYF
Ga0055469_101226802	3300003999	Natural And Restored Wetlands	MFKLDHKLAPDEFIQTFFEVNRQDHQRPPHPWEALFREGKCTREQLQGWAKE
Ga0055488_100268251	3300004070	Natural And Restored Wetlands	MFTLSHKLNADEFIQTFFEVNRQDHQRPAHPWEEIFRNGKCTKEQLQGWGKERYYFTK
Ga0062592_1004105442	3300004480	Soil	MFKLDHKLAPDEFIGTFFEANRQDHQRPPHPWEAIFREGKATRDQLHGW
Ga0062591_1003461831	3300004643	Soil	MFTLSQKLNPDEFIKTFFEANRQDHQRPAHPWDEIFRNGKCSRE
Ga0066676_102753312	3300005186	Soil	MFKIDHKLGPDEFIQTFFEANKSDHQRPPHPWEILFRGGNC*
Ga0070680_1011622952	3300005336	Corn Rhizosphere	MFKLDRKLLPDEFIQTFFEANRQDHQRPPHPWEAIFREGKATREQLHGWGKERYYFTKQVPI
Ga0070660_1000989443	3300005339	Corn Rhizosphere	MFSLDRKLKPDEFIETFFAVNKQDHQRPPHPWEAIFREGKCTREQLQ
Ga0070674_1003409952	3300005356	Miscanthus Rhizosphere	MFTLDQKLGPDEFIKTFYEANRQDHQRPPHPWEALFREGKCTREQLQGWGKERY
Ga0070708_1006962451	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MYKLDQKLSPDDFIQTFFAVNKSDHQRPPHPWETLFRGGKCTKEQLQGWAKERFYF
Ga0066686_106199802	3300005446	Soil	MYKLAQKLSPAEFKETFARVNKEDHQRPPHPWDLLFRDGKCTK
Ga0070697_1019094582	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MFKLEQKLRPNEFIETFFQVNKNDHQRSPHPWETLFREGKCT
Ga0066905_1005649772	3300005713	Tropical Forest Soil	MYKLDHILSPDEFIQTFSEVNKSDHQRPPHPWETLFRGGKCTREQLQGWAK
Ga0075417_103658621	3300006049	Populus Rhizosphere	MFKLESKLGPDEFIKTFYEANRQDHQRPPHPWEALFR
Ga0075422_102507811	3300006196	Populus Rhizosphere	MFKLDHKLAPEEFIQTFFEANRQDHQRSPHPWEALFRDGKCTRE
Ga0079221_100448351	3300006804	Agricultural Soil	MFSLDRKLTPDEFIETFFAVNKQDHQRPPHPWEAIFREGK
Ga0075430_1010118811	3300006846	Populus Rhizosphere	MFTLSQKLNPDEFIKTFFEANRQDHQRPAHPWDEIFRNGKCSREQLQGWG
Ga0075430_1014767752	3300006846	Populus Rhizosphere	MFTLTQKLNPDEFIKTFFDANRQDHQRPAHPWDEIFRNGKCSREQLQG
Ga0075430_1017460312	3300006846	Populus Rhizosphere	MFNLTDRLSPDEFIDTFFEVNKRDHQRSPHPWDALFRDGRCTKEQLQGW
Ga0075431_1014361901	3300006847	Populus Rhizosphere	MFKLESKLGPDEFIKTFYEANRQDHQRLPHPWEALFREGKCTQEQLQGWGK
Ga0075420_1017378752	3300006853	Populus Rhizosphere	MFTLSQKLNPDEFIKTFFEANRQDHQRPAHPWDEIFRNGKCSREQLQ
Ga0075425_1007274471	3300006854	Populus Rhizosphere	MYILERKLNPDEFIDIFFAVNKNDHQRPPHPWETLFRGGKC
Ga0075425_1014147102	3300006854	Populus Rhizosphere	MYKLDQKLSPDDFIQTFFAVNKSDHQRPPHPWETLFRGGKCTKEQL
Ga0075434_1025598291	3300006871	Populus Rhizosphere	MFKLEQKLSPEEFIRTFFEVNRNDHQRPPHPWEALFQEG
Ga0068865_1003158092	3300006881	Miscanthus Rhizosphere	MFSLDRKLTPDEFIETFFAVNKQDHQRPPHPWEAIFREGKCTKEQLQGWGKERYYFTKQV
Ga0075435_1017597641	3300007076	Populus Rhizosphere	MFKLDHKLAPDDFIKTFFEVNKNDHQRPPHPWETLFRGGKCTKEQLQGWGKERYYFV
Ga0099791_105963352	3300007255	Vadose Zone Soil	MFKLDHKLAPDEFIQIFFDANRQDHQRPPHPWEAIFR
Ga0111539_101500473	3300009094	Populus Rhizosphere	MFKLDHKLAPEEFIQTFFEANRQDHQRSPHPWEALF
Ga0105091_107046541	3300009146	Freshwater Sediment	VRVIKGAATVYKLEGKLEPDEFIEMFFQVNKNDHQRPPHPWDALFGEVKCTKAQLQGWAKERYYF
Ga0114129_108251281	3300009147	Populus Rhizosphere	MFKLDQKLGPDEFIKTFYEANRQDHQRPPHPWEALFREGKCTQEQLQGWGKERYYF
Ga0105243_106280811	3300009148	Miscanthus Rhizosphere	MFKLDRKLAADEFIQTFFDANRQDHQRPPHPWEAIFRDGKCTKEQLQGWGK
Ga0111538_109825732	3300009156	Populus Rhizosphere	MLRPCIVTSSKGITFMFTLDRKLGPDEFIKTFYEANRQDHQRPPHPWEALFRDGKCTREQLQGWGKERYYFTKQVPI
Ga0105104_103559372	3300009168	Freshwater Sediment	MYKLDHVLSPDEFIQTFSDVNKNDHQRPPHPWEVLFREGKC
Ga0105252_102984261	3300009678	Soil	MFTLAHKLNPDEFIKTFFEVNRHDHQRPAHPWEEIFRNGKCTKEQLQGWGKERYYFTKQV
Ga0105076_11179851	3300009816	Groundwater Sand	MFTLAQKLTPDEFIKTFFEANRQDHQRPAHPWEDIFRNGKCTKEQLQGWGKERYY
Ga0126380_104875332	3300010043	Tropical Forest Soil	MYKLDHRLSPDEFIQTFSEVNKNDHQRPPHPWETL
Ga0126384_115519042	3300010046	Tropical Forest Soil	MFKLERKLSPDEFISTFFDVNRKDHQRPPHPWETLFRTGQCSRGQLQGWA
Ga0126382_103727031	3300010047	Tropical Forest Soil	VFKLERKLDPDEFGQTFSEVNKNDHQRPPHPWETLFREGKCTREQLQGWAKER
Ga0126382_115299392	3300010047	Tropical Forest Soil	RLSPDEFIQTFSEVNKNDHQRPPHPWETLFRGGKCTREQLQGWAKERYYVS*
Ga0126376_100518811	3300010359	Tropical Forest Soil	MYKLDQKLSPDDFIQTFFEVNKDDHQRPPHPWETLFRGGKCTKEQLQGWAKE
Ga0126376_112603432	3300010359	Tropical Forest Soil	PDEFIQTFSEVNKNDHQRPPHPWETLFRGGKCTREQLQGWAKERYYVS*
Ga0126376_130775001	3300010359	Tropical Forest Soil	VFKLDRKLDPDEFIQTFSEVNKNDHQRRPHPWETLFREGKCTREQLQGWAKERYYVS*
Ga0134128_115528472	3300010373	Terrestrial Soil	MFKLDRKLAADEFIQTFFDANRQDHQRQPTHPWEDLFRNGKCTREQLQGWGKERYYFTKQVPI
Ga0126381_1036115062	3300010376	Tropical Forest Soil	MYKLDQKLSPDDFIQTFFEVNKDDHQRPPHPWETLFRGGKCTKEQLQGWAK
Ga0126383_106032782	3300010398	Tropical Forest Soil	VFKLDRKLDPDEFIQTFSEVNKNDHQRPPHPWETLFREGKCTREQLQGWAKERYYVS*
Ga0134123_117626772	3300010403	Terrestrial Soil	MFKLDRKLLPDEFIQTFFEANRQDHQRPPHPWEAIFREGKATREQLHGWGKERYYFTKQVPIKEYS
Ga0105246_105169472	3300011119	Miscanthus Rhizosphere	MFKLDRKLAADEFIQTFFDANRQDHQRPPHPWEAIFREGKCTREQLQGWAKERY
Ga0137444_10634551	3300011397	Soil	MFTLDQKLSPDEFIKTFFEANRQDHQRPPHPWEEI
Ga0137424_10529402	3300011412	Soil	MFTLSQKLNPDEFIKTFFEANRQDHQRPAHPWDEIFRNGKCSREQLQGWGKERYYFT
Ga0137425_11777882	3300011422	Soil	MFTLDQKLSPDEFIKTFFEANRQDHQRPPHPWEEIFRNGKCTKEQLQGWGKERY*
Ga0137463_13023262	3300011444	Soil	MFTLDQKLGPDEFIKTFYEANRQDHQRPPHPWEALFRDGKCTREQLQGWGKERYYFTKQV
Ga0137427_101663681	3300011445	Soil	MFTLDQKLSPDEFIKTFFEANRQDHQRPPHPWEELFRNGKCTKEQLQGWGKERYYFTKQV
Ga0137430_10303303	3300012041	Soil	MFTLSQKLNPDEFINTFFEANRQDHQRPAHPWEKIFRNGKCTKEQLQGWGKERYYFT
Ga0137369_106741821	3300012355	Vadose Zone Soil	MFLLDHKLSPDEFIATFFETNRQDHQRPPHPWEAMFREGKCSKEQLQGW
Ga0137375_111874652	3300012360	Vadose Zone Soil	MFTLDRKLSPDEFIATFFETNRQDHQRPPHPWEAMFREGKCSKE
Ga0137373_107271072	3300012532	Vadose Zone Soil	MFKVDHKLSPDEFIQTFSEANKSDHQRPPHPWESLFRGGKCTKDQLQ
Ga0157302_100593602	3300012915	Soil	MFSLDRKLTPDEFIETFFAVNKQDHQRPPHPWEAIFREGKCTREQLQGWAK
Ga0137419_102589181	3300012925	Vadose Zone Soil	MFTLDQKLGPDEFIKTFYEANRQDHQRPPHPWEAIFREGKCTQEQLQ
Ga0157374_123854552	3300013296	Miscanthus Rhizosphere	MFSLDRKLTPDEFIETFFAVNKQDHQRPPHPWEAIFREGKCTRE
Ga0134075_101423941	3300014154	Grasslands Soil	MFTLDRKLSPDEFITTFFEANRQDHQRLPHPWEAIFREGKCSKEQLQG
Ga0075321_10546332	3300014300	Natural And Restored Wetlands	MFKLDRKLAPDEFIQTFFEANRQDHQCPPHPWEAIFRNGKATQDQLQGWAKER
Ga0180073_10473501	3300015256	Soil	MFKLEHKLNPDAFIDTFIEVNRNDHQRPPHPWETLFRDGKCTKEQLQGWAKERYY
Ga0182037_101788911	3300016404	Soil	MFSLDHKLTPDEFIETFFAVNKQDHQRPPHPWETIFREGKCT
Ga0184637_104659191	3300018063	Groundwater Sediment	MFKLDHKLSPDEFINTFFEANRQDHQRPPHPWEAIFREGKCTTEQLQGWAKERYY
Ga0184635_102918441	3300018072	Groundwater Sediment	VVKLERKLDPDEFIQTFSEVNKSDHQRPPHPWETLFREGKCSREQLQGW
Ga0184632_103449572	3300018075	Groundwater Sediment	MFKLDHKLSPDEFIDTFLEANRQDHQRPPHPWEAIFRE
Ga0190265_112307541	3300018422	Soil	MFTLDHKLSPDAFITTFFEVNRQDHQRPAHPWEEIFRNGKCTKEQLQGW
Ga0190265_132123002	3300018422	Soil	MFKLDRKLSPDEFIATFYETNKKDHERPPHPWDLLFRTGKCTPEQLQ
Ga0190272_100396061	3300018429	Soil	MFTLDHKLSPDEFIKTFFDVNRQDHQRPPHPWEELFRNGKC
Ga0180119_12832881	3300019228	Groundwater Sediment	VFKLERKLAPDEFIKTFFEVNRNDHQRPPHPWETLFREGKCTKEQLRGWAKE
Ga0190264_107055662	3300019377	Soil	VFKLDHKLTPDEFIKTFFEVNKQDHQRPPHPWDALFREGKCTKEQL
Ga0210382_103674542	3300021080	Groundwater Sediment	MFKLDHKLNPDEFITKFFEAKRQDHQRAPHPWETLFR
Ga0193719_102480482	3300021344	Soil	MFTLDQKLGPDEFIKTFYEANRQDHQRPPHPWEAIFREGKCTQEQLQGWG
Ga0126371_133121252	3300021560	Tropical Forest Soil	VFKLDRKLDPDEFIQTFSEVNKNDHQRPPHPWETLFREGKCTREQLQGWAKERYYVS
Ga0212128_108189012	3300022563	Thermal Springs	MHKLERTLSPDEFIQTFFEVNKKDHQRPLHPWDAL
Ga0247801_10631852	3300023064	Soil	MFSLDRKLTPDEFIETFFAVNKQDHQRPPHPWEAIFREGKCTREQL
Ga0207680_105286032	3300025903	Switchgrass Rhizosphere	MFSLDRKLTPDEFIETFFAVNKQDHQRPPHPWEAIFREGKCTREQLQGWAKE
Ga0207649_112650982	3300025920	Corn Rhizosphere	MFSLDRKLTPDEFVETFFAVNKQDHQRPPHPWEAIFRA
Ga0210116_10155832	3300025959	Natural And Restored Wetlands	MFTLSHKLNADEFIQTFFEVNRQDHQRPAHPWEEIFRNGKCTKEQLQGWGK
Ga0208141_10282382	3300025988	Rice Paddy Soil	MFKLDGKLGPDEFIRTFFEANRQDHQRPPHPWEAIFRQGKCTREQLQGWAKERYY
Ga0207648_115599421	3300026089	Miscanthus Rhizosphere	MFSLDRKLSPDDFINTFFDVNRKDHQGSPHPWESLFREGKCTKEQ
Ga0207675_1022650641	3300026118	Switchgrass Rhizosphere	MFTLSQKLDPDEFIKTFFEANRQDHQRPAHPWDEIFRSGKCTKEQ
Ga0209470_11784042	3300026324	Soil	MFTLDRKLSPDEFITTFFEATRQDHQRPPHPWEAIFREGKC
Ga0209896_10377301	3300027006	Groundwater Sand	MFKLDHKLSPDEFIQTFFEANKSDHQRPPHPWETLFRGGKCTKDQLQGWAKE
Ga0209814_103005372	3300027873	Populus Rhizosphere	MFKLDHKLNPDEFISTFFEANRQDHQRPAHPWEALFREGKCSKEQLQG
Ga0209465_100286601	3300027874	Tropical Forest Soil	VFKLDRKLDPDEFIQTFSEVNKNDHQRPPHPWETLFREG
Ga0268264_112535081	3300028381	Switchgrass Rhizosphere	MFKLDHQLAPEEFIQTFFEANRQDHQRSPHPWEALFRDGKCTREQL
Ga0307281_101255262	3300028803	Soil	MFTLARKLNSDEFISTFFEANRQDHQRPAHPWEEIFRNGKCTKEQLQGWGK
Ga0299906_110970941	3300030606	Soil	MFKLDRKLGPDEFIATFFEANKRDHQRPPHPWESIFRSGKCTKEQLQGWAK
Ga0307505_103958991	3300031455	Soil	MFTLDHKLSPDAFITTFFAVNRQDHQRPPHPWEELFRNGKCSNEQL
Ga0307468_1000150653	3300031740	Hardwood Forest Soil	MFKIDHKLGPDEFIQTFFEANKSDHQRPPHPWEILFRGGNC
Ga0310904_108912161	3300031854	Soil	MFKLDRKLLPDEFIQTFFEANRQDHQRPPHPWEAIFREGKATREQL
Ga0326597_110995672	3300031965	Soil	MFKLDRKLGPDEFIATFFEANKRDHQRPPHPWESIFRAGKCTKEQLQ
Ga0306922_103811181	3300032001	Soil	MFSLDHKLTPDEFIETFFAVNKQDHQRPPHPWETIFR
Ga0307411_106129152	3300032005	Rhizosphere	MFTLSHKLNPDEFIKTFFEVNRLDHQRPAHPWEEIFR
Ga0315281_106989632	3300032163	Sediment	MFTLAQKLNPDEFIKTFFETNRQDHQRQPHPWDELFHNGKC
Ga0316630_101868721	3300033487	Soil	MFTLSHKLNPDEFIKTFFEVNRQDHQRPAHPWEEI
Ga0364945_0264627_408_530	3300034115	Sediment	MFKLDRKLAPGEFIQTFFDANRQDHQRPPHPWEAIFREGKC
Ga0364932_0045723_2_106	3300034177	Sediment	MFTLRQKLSPDEFIKTFFEANRQDHQRPPHPWEEI
Ga0364934_0239133_1_162	3300034178	Sediment	MFKLENKLGPDAFIDTFLEVNRNDHQRPPHPWETLFREGRCTREQLQGWAKERY