Metagenome / Metatranscriptome Family F090594

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090594
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	120 residues
Representative Sequence	MRGTMLAVLMALLAGTALAGTGDSAIGNETPNADQAQDKAEADTADEAKEPEPFKVPAGYQAKTRGKKVVYCKKSMESGTRFSQERCYSEEQLRAMTVSREQEQANFDQSRKVCANVESCNTN
Number of Associated Samples	89
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	74.07 %
% of genes near scaffold ends (potentially truncated)	29.63 %
% of genes from short scaffolds (< 2000 bps)	81.48 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.148 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (13.889 % of family members)
Environment Ontology (ENVO)	Unclassified (31.481 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (37.963 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 26.49% β-sheet: 13.91% Coil/Unstructured: 59.60%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00361	Proton_antipo_M	37.04
PF00662	Proton_antipo_N	0.93
PF00291	PALP	0.93
PF04354	ZipA_C	0.93
PF02576	RimP_N	0.93
PF00012	HSP70	0.93
PF00146	NADHdh	0.93
PF13670	PepSY_2	0.93
PF12838	Fer4_7	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG1009	Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit	Energy production and conversion [C]	1.85
COG0443	Molecular chaperone DnaK (HSP70)	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG0650	Formate hydrogenlyase subunit HyfC	Energy production and conversion [C]	0.93
COG0779	Ribosome maturation factor RimP	Translation, ribosomal structure and biogenesis [J]	0.93
COG1005	NADH:ubiquinone oxidoreductase subunit 1 (chain H)	Energy production and conversion [C]	0.93
COG3115	Cell division protein ZipA, interacts with FtsZ	Cell cycle control, cell division, chromosome partitioning [D]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.15 %
Unclassified	root	N/A	1.85 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.15 %
Unclassified	root	N/A	1.85 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.15 %
Unclassified	root	N/A	1.85 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	97.22 %
Unclassified	root	N/A	1.85 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	83.33 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.78 %
Unclassified	root	N/A	1.85 %

Name	Rank	Taxonomy	Distribution
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	81.48 %
Unclassified	root	N/A	1.85 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	0.93 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	81.48 %
Unclassified	root	N/A	1.85 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	0.93 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	81.48 %
Unclassified	root	N/A	1.85 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	0.93 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	81.48 %
Unclassified	root	N/A	1.85 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c2029451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	827	Open in IMG/M
3300000956\|JGI10216J12902_102447134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	765	Open in IMG/M
3300003310\|D1draft_1014832	All Organisms → cellular organisms → Bacteria	2790	Open in IMG/M
3300003990\|Ga0055455_10155248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	701	Open in IMG/M
3300003991\|Ga0055461_10064701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	874	Open in IMG/M
3300003996\|Ga0055467_10181098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	643	Open in IMG/M
3300004000\|Ga0055458_10052005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1023	Open in IMG/M
3300004058\|Ga0055498_10080954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	628	Open in IMG/M
3300004156\|Ga0062589_101862985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	606	Open in IMG/M
3300004282\|Ga0066599_100896152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	634	Open in IMG/M
3300004463\|Ga0063356_100151660	All Organisms → cellular organisms → Bacteria → Proteobacteria	2643	Open in IMG/M
3300004463\|Ga0063356_103686782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	660	Open in IMG/M
3300004463\|Ga0063356_104419650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	605	Open in IMG/M
3300004479\|Ga0062595_101918572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	568	Open in IMG/M
3300005093\|Ga0062594_100458167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1059	Open in IMG/M
3300005293\|Ga0065715_10377385	All Organisms → cellular organisms → Bacteria → Proteobacteria	904	Open in IMG/M
3300005332\|Ga0066388_101810410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1086	Open in IMG/M
3300005334\|Ga0068869_100637958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	903	Open in IMG/M
3300005353\|Ga0070669_100302065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1288	Open in IMG/M
3300005354\|Ga0070675_101139394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	718	Open in IMG/M
3300005365\|Ga0070688_100665062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	803	Open in IMG/M
3300005617\|Ga0068859_100754147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1062	Open in IMG/M
3300005617\|Ga0068859_100804288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1028	Open in IMG/M
3300005618\|Ga0068864_102507253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	522	Open in IMG/M
3300005840\|Ga0068870_11251707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	539	Open in IMG/M
3300006196\|Ga0075422_10264066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	727	Open in IMG/M
3300006852\|Ga0075433_10004060	All Organisms → cellular organisms → Bacteria → Proteobacteria	11337	Open in IMG/M
3300006871\|Ga0075434_100006745	All Organisms → cellular organisms → Bacteria → Proteobacteria	10551	Open in IMG/M
3300006969\|Ga0075419_10407103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	933	Open in IMG/M
3300009053\|Ga0105095_10027139	All Organisms → cellular organisms → Bacteria → Proteobacteria	3085	Open in IMG/M
3300009078\|Ga0105106_10843526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	652	Open in IMG/M
3300009087\|Ga0105107_10012115	All Organisms → cellular organisms → Bacteria → Proteobacteria	5972	Open in IMG/M
3300009094\|Ga0111539_10129339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2957	Open in IMG/M
3300009100\|Ga0075418_10399789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1469	Open in IMG/M
3300009148\|Ga0105243_11261136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	755	Open in IMG/M
3300009156\|Ga0111538_10372815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1807	Open in IMG/M
3300009156\|Ga0111538_10711910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1272	Open in IMG/M
3300009176\|Ga0105242_11399895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	727	Open in IMG/M
3300009870\|Ga0131092_10266468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1704	Open in IMG/M
3300009873\|Ga0131077_10003298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	38922	Open in IMG/M
3300009987\|Ga0105030_100253	All Organisms → cellular organisms → Bacteria → Proteobacteria	4583	Open in IMG/M
3300010051\|Ga0133939_1109048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1270	Open in IMG/M
3300010362\|Ga0126377_11770025	Not Available	693	Open in IMG/M
3300010362\|Ga0126377_11807598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	686	Open in IMG/M
3300010362\|Ga0126377_13313983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	521	Open in IMG/M
3300010399\|Ga0134127_10688972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1061	Open in IMG/M
3300010400\|Ga0134122_12487731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	567	Open in IMG/M
3300011333\|Ga0127502_10073253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	503	Open in IMG/M
3300011333\|Ga0127502_10297907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	500	Open in IMG/M
3300011333\|Ga0127502_10532822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	508	Open in IMG/M
3300011429\|Ga0137455_1163090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	666	Open in IMG/M
3300012911\|Ga0157301_10255440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	618	Open in IMG/M
3300012943\|Ga0164241_10585487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	806	Open in IMG/M
3300013297\|Ga0157378_13004140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	523	Open in IMG/M
3300014295\|Ga0075305_1002452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2793	Open in IMG/M
3300014318\|Ga0075351_1178372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	525	Open in IMG/M
3300015077\|Ga0173483_10727987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	563	Open in IMG/M
3300015371\|Ga0132258_11751719	Not Available	1566	Open in IMG/M
3300015372\|Ga0132256_100884996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1009	Open in IMG/M
3300015372\|Ga0132256_100987496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	957	Open in IMG/M
3300015373\|Ga0132257_101832625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	780	Open in IMG/M
3300017792\|Ga0163161_10527732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	965	Open in IMG/M
3300018429\|Ga0190272_10098939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1867	Open in IMG/M
3300018429\|Ga0190272_12481156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	564	Open in IMG/M
3300018481\|Ga0190271_11844669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	716	Open in IMG/M
3300018481\|Ga0190271_12221689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	655	Open in IMG/M
3300019356\|Ga0173481_10057292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1363	Open in IMG/M
3300019487\|Ga0187893_10052419	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4110	Open in IMG/M
3300019487\|Ga0187893_10394229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	940	Open in IMG/M
3300020186\|Ga0163153_10160936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1204	Open in IMG/M
3300020195\|Ga0163150_10254123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	893	Open in IMG/M
3300025552\|Ga0210142_1066819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	701	Open in IMG/M
3300025555\|Ga0210121_1033513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	876	Open in IMG/M
3300025907\|Ga0207645_10624112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	732	Open in IMG/M
3300025926\|Ga0207659_11074529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	692	Open in IMG/M
3300025926\|Ga0207659_11177056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	659	Open in IMG/M
3300025930\|Ga0207701_10596475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	941	Open in IMG/M
3300025938\|Ga0207704_11308258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	620	Open in IMG/M
3300026012\|Ga0208653_1011418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	737	Open in IMG/M
3300026017\|Ga0208001_1000944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3407	Open in IMG/M
3300026118\|Ga0207675_101700513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	651	Open in IMG/M
3300027526\|Ga0209968_1073773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	610	Open in IMG/M
3300027617\|Ga0210002_1009380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1493	Open in IMG/M
3300027731\|Ga0209592_1133632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	896	Open in IMG/M
3300027818\|Ga0209706_10003665	All Organisms → cellular organisms → Bacteria → Proteobacteria	8297	Open in IMG/M
3300027818\|Ga0209706_10017315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3673	Open in IMG/M
3300027886\|Ga0209486_10483563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	767	Open in IMG/M
3300027907\|Ga0207428_10363746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1063	Open in IMG/M
3300027979\|Ga0209705_10019642	All Organisms → cellular organisms → Bacteria → Proteobacteria	3718	Open in IMG/M
3300028648\|Ga0268299_1000549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	109844	Open in IMG/M
3300030620\|Ga0302046_10001127	All Organisms → cellular organisms → Bacteria → Proteobacteria	25230	Open in IMG/M
3300031455\|Ga0307505_10036724	All Organisms → cellular organisms → Bacteria → Proteobacteria	2200	Open in IMG/M
3300031455\|Ga0307505_10232436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	855	Open in IMG/M
3300031548\|Ga0307408_100015826	All Organisms → cellular organisms → Bacteria → Proteobacteria	5026	Open in IMG/M
3300031740\|Ga0307468_100151387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1490	Open in IMG/M
3300031740\|Ga0307468_102303356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	523	Open in IMG/M
3300031824\|Ga0307413_10097366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1934	Open in IMG/M
3300031824\|Ga0307413_11128827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	678	Open in IMG/M
3300031852\|Ga0307410_11285421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	639	Open in IMG/M
3300031908\|Ga0310900_10739639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	791	Open in IMG/M
3300032004\|Ga0307414_10873900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	823	Open in IMG/M
3300032157\|Ga0315912_10198886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1572	Open in IMG/M
3300032157\|Ga0315912_10645491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	843	Open in IMG/M
3300032157\|Ga0315912_11213874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	597	Open in IMG/M
3300033412\|Ga0310810_10149484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2714	Open in IMG/M
3300033417\|Ga0214471_10175864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1761	Open in IMG/M
3300034128\|Ga0370490_0060988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1235	Open in IMG/M
3300034354\|Ga0364943_0106258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	984	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	57.41%
Host-Associated	Host-Associated	37.96%
Engineered	Engineered	4.63%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	37.96%
Plants	Host-Associated → Plants	37.96%
Aquatic	Environmental → Aquatic	19.44%
Wastewater	Engineered → Wastewater	3.70%
Bioreactor	Engineered → Bioreactor	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	35.19%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.15%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.81%
Freshwater	Environmental → Aquatic → Freshwater	12.04%
Marine	Environmental → Aquatic → Marine	6.48%
Activated Sludge	Engineered → Wastewater → Activated Sludge	2.78%
Cave	Environmental → Terrestrial → Cave	1.85%
Sediment	Environmental → Aquatic → Sediment	0.93%
Floodplain	Environmental → Terrestrial → Floodplain	0.93%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	0.93%
Unclassified	Engineered → Bioreactor → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	28.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.67%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.04%
Sediment	Environmental → Aquatic → Freshwater → Sediment	6.48%
Wetlands	Environmental → Aquatic → Marine → Wetlands	6.48%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.48%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.63%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.78%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	2.78%
Lake	Environmental → Aquatic → Freshwater → Lake	1.85%
Loam	Environmental → Terrestrial → Soil → Loam	1.85%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	1.85%
Pond	Environmental → Aquatic → Freshwater → Pond	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.93%
Petrochemical	Engineered → Wastewater → Industrial Wastewater → Petrochemical	0.93%
Unclassified	Engineered → Bioreactor → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.04%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	6.48%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	6.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.48%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.63%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.70%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.78%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	2.78%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.85%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	1.85%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.93%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.93%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.93%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified	0.93%
Unclassified	Engineered → Bioreactor → Unclassified → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.89%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.33%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	6.48%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	6.48%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	4.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.63%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	3.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.70%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	2.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.78%
Freshwater Microbial Mat	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat	1.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.85%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	1.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.85%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	1.85%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	0.93%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.93%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	0.93%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Industrial Wastewater	0.93%
Down-Flow Hanging Sponge Reactor	Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Down-Flow Hanging Sponge Reactor	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003310	Down-flow hanging sponge reactor microbial communities from the University of Illinois at Urbana-Champaign, USA - L1-648F-DHS	Engineered	Open in IMG/M
3300003990	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2	Environmental	Open in IMG/M
3300003991	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqB_D1	Environmental	Open in IMG/M
3300003996	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2	Environmental	Open in IMG/M
3300004000	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLB_D2	Environmental	Open in IMG/M
3300004058	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004282	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Initial sediment	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009870	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Linkou plant	Engineered	Open in IMG/M
3300009873	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Wenshan plant	Engineered	Open in IMG/M
3300009987	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_213 metaG	Host-Associated	Open in IMG/M
3300010051	Industrial wastewater microbial communities from reactors of effluent treatment plant in South Killingholme, Immingham, England. Combined Assembly of Gp0151195, Gp0151196	Engineered	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011333	Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011429	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014295	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLB_D1	Environmental	Open in IMG/M
3300014318	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D1_rd	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019487	White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG	Environmental	Open in IMG/M
3300020186	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP6.IB-1	Environmental	Open in IMG/M
3300020195	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.P2.IB	Environmental	Open in IMG/M
3300025552	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025555	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqB_D1 (SPAdes)	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026012	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLB_D1 (SPAdes)	Environmental	Open in IMG/M
3300026017	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLC_D1 (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027526	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes)	Host-Associated	Open in IMG/M
3300027617	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027731	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027818	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027979	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300028648	Activated sludge microbial communities from bioreactor in Nijmegen, Gelderland, Netherland - NOB reactor	Engineered	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033417	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155	Environmental	Open in IMG/M
3300034128	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_06D_16	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_20294512	3300000033	Soil	MRGTMLAVLMALLAGTALAGTGDSAIGNETPNADQAQDKAEADTADEAKEPEPFKVPAGYQAKTRGKKLVYCKKSMESGTRFSQERCYSEEQLRAMTVDREQEQANFDQSRKVCANVESCNTN*
JGI10216J12902_1024471342	3300000956	Soil	AFAADNDSAIGNETPTADQAQDKAEADTTDEAKPEEPFKVPAGYQPKKRGKKMVYCKKAIESGTRFSQEKCYSEEQLRAMEGERDQDQVTLDQSRKVCGTAESCSAN*
D1draft_10148321	3300003310	Down-Flow Hanging Sponge Reactor	MRSTMLAFLMVLLVCAGVAQASPSAIGNETATADQAQDKAETDTADDAKEPEEFKVPAGYRAKKRGKKVVYCKKDMESGTRFAQEHCYDEAQLRARELQREQEKSTLDQSRLVCATPDTCASN*
Ga0055455_101552481	3300003990	Natural And Restored Wetlands	MRGMMLAVLMALFADGALAGASDSAIGNDTPTADQARDKVEPETADEAKEPEPFKIPAGYQLKKRGKRVVYCKKSMESGTRFSQERCFSEDQLRAIEMTRDQDQAEFDQTRKVCAAVENCGSG*
Ga0055461_100647012	3300003991	Natural And Restored Wetlands	AAFLSGTALANPGAIGNETPTAEQAPDKAVAETVNEAGESEPFKVPAGYQPKKRGKRVVYCKKAMESGTRFSQEKCYSEEQLRAMSVERDQDQANFDQTRKVCANPESCAGG*
Ga0055467_101810982	3300003996	Natural And Restored Wetlands	MRGMMLAALMAFVADPALAGTGDSAIGNDTPTADQAQDKAEADTADGAKEAAPFKVPAGYQAKSRGKKTVYCKKSMESGTRFAQEKCYSEEQLRAMDASREEESAKLDQTRKVCASLENCSGG*
Ga0055458_100520051	3300004000	Natural And Restored Wetlands	MRSMMLAVLAAFLSGTALANPGAIGNETPTAEQAPDKAVAETVNEAGESEPFKVPAGYQPKKRGKRVVYCKKAMESGTRFSQEKCYSEEQLRAMSVERDQDQANFDQTRKVCANPESCAGG*
Ga0055498_100809541	3300004058	Natural And Restored Wetlands	MRGMMLAALMAFVAGTALAGTGDSAIGNDTPTADQAQDKVEPDTADGAKEAEPFKVPAGYQAKSRGKKTVYCKKSMESGTRFAQEKCYSEEQLRAMDTSREEDTAKLDQTRKVCASLENCSGG*
Ga0062589_1018629852	3300004156	Soil	MRGTMLAVLMALLAGTALAGTGDSAIGNETPNADQAQDKAEADTADEAKEPEPFKVPAGYQAKTRGKKVVYCKKSMESGTRFSQERCYSEEQLRAMTVSREQEQANFDQSRKVCANVESCNTN*
Ga0066599_1008961522	3300004282	Freshwater	MRGMMLAVWMAFLAAPALAGTGDSAIGNDTPTADQAQDKAEADTADEAKEAEPFKVPVGYQAKSRGKKTVYCKKAMESGTRFAQEKCYSEEQLRAMEASREEDTAKLDQTRKVCANLENCSGG*
Ga0063356_1001516604	3300004463	Arabidopsis Thaliana Rhizosphere	MRSTMLAILVAMMACAGVAQASGSAIGNETATADQAQDKAETDTADEAKEQEPFKVPAGYRAKKRGKKMVYCKKDMESGTRFSQERCFDEEQLRAQELARQQEKATLDASRLVCGTPESCASN*
Ga0063356_1036867822	3300004463	Arabidopsis Thaliana Rhizosphere	GTGDSAIGNETPNADQAQDKAEADTADEAKEPEPFKVPAGYQAKTRGKKLVYCKKSMESGTRFSQERCYSEEQLRAMTVSREQEQANFDQSRKVCANVESCNTN*
Ga0063356_1044196501	3300004463	Arabidopsis Thaliana Rhizosphere	MRSMMLAILMAVVTASAFAGDNENAIGNETPTADQAQDKASADTTDEATPEEPFKVPAGYQPKKRGKKMVYCKKAMESGTRFSQEKCYSEDQLRALEAEREQEQVTLDQNRKVCGTVESCGAN*
Ga0062595_1019185722	3300004479	Soil	MRGTMLAVLMALLAGTALAGTGDSAIGNETPNADQAQDKAEADTADEAKEPEPFKVPAGYQAKTRGKKVVYCKKSMESGTRFSQERCYSEEQLRAITVSREQEQANFDQS
Ga0062594_1004581671	3300005093	Soil	MRGMMLVVLMAFVVGPALASDGDSAIGNDTPTADQAQDKAAADTADEAKEPEPFKVPAGYQAKQRGKKTVYCKKAMESGTRFSQEKCYSEETLRAMEVSRSEDQAKLDQTRKICANLENCSGG*
Ga0065715_103773852	3300005293	Miscanthus Rhizosphere	MRGMMLVVLMAFVAGPALASDGDSAIGNDTPTADQAQDKAAADTADEAKEPEPFKVPAGYQAKQRGKKTVYCKKAMESGTRFSQEKCYSEETLRAMEVSRSEDQAKLDQTRKICANLENCSGG*
Ga0066388_1018104102	3300005332	Tropical Forest Soil	MRGTMLAVLMALLAGTALAGTGDSAIGNETPNAAQAQDKAEADTADEAKEPEPFKVPAGYQAKTRGKKAVYCKKSMESGTRFSQERCYSEEQLRAMTVSREQEQANFDQSRKVCANVESCNTN*
Ga0068869_1006379582	3300005334	Miscanthus Rhizosphere	MRGMMLVVLMAFAVGPALASEGDSAIGNDTPTADQAQDKAAADTADEAKEPEPFKVPAGYQAKQRGKKTVYCKKAMESGTRFSQEKCFSEETLRAMEASRNEDQAKLDQTRKICASVDNCSGG*
Ga0070669_1003020652	3300005353	Switchgrass Rhizosphere	MRGMMLVVLMAFVAGPALASDGDSAIGNDTPTADQAQDKAAADTADEAKEPEPFKVPAGYQAKQRGKKTVYCKKAMESGTRFSQEKCFSEETLRAMEASRNEDQAKLDQTRKICASVDNCSGG*
Ga0070675_1011393941	3300005354	Miscanthus Rhizosphere	MRGMMLVVLMAFVVGPALASDGDSAIGNDTPTADQAQDKAAADTADEAKEPEPFKVPAGYQAKQRGKKTVYCKKAMESGTRFSQEKCFSEETLRAMEASR
Ga0070688_1006650621	3300005365	Switchgrass Rhizosphere	MLVVLMAFVAGPALASDGDSAIGNDTPTADQAQDKAAADTADEAKEPEPFKVPAGYQAKQRGKKTVYCKKAMESGTRFSQEKCYSEETLRAMEVSRSEDQAKLDQTRKICANLENCSGG*
Ga0068859_1007541472	3300005617	Switchgrass Rhizosphere	MRGTMLAVLMALLAGTALAGTGDSAIGNETPNADQAQDKAEADTADEAKEPEPFKVPAGYQAKTRGKKMVYCKKSMESGTRFSQERCYSEEQLRAMTVSREQEQANFDQSRKVCANVESCNTN*
Ga0068859_1008042881	3300005617	Switchgrass Rhizosphere	MRGMMLVVLMAFVAGPALASDGDSAIGNDTPTADQAQDKAAADTADEAKEPEPFKVPAGYQAKQRGKKTVYCKKTMESGTRFSQEKCYSEETLRAMEVSRSEDQAKLDQTRKICANLENCSGG*
Ga0068864_1025072531	3300005618	Switchgrass Rhizosphere	MRGTMLAVLMALLAGTALAGTGDSAIGNETPNADQAQDKAEADTADEAKEPEPFKVPAGYQAKTRGKKVVYCKKSMESGTRFSQERCYSEEQLRAMTVSREQEQANFDQSRKVCANVES
Ga0068870_112517071	3300005840	Miscanthus Rhizosphere	MRGMMLVVLMAFVAGPALASDGDSAIGNDTPTADQAQDKAAADTADEAKEPEPFKVPAGYQAKQRGKKTVYCKKAMESGTRFSQEKCYSEETLRAMEVSRSEDQAKLDQTRKICAN
Ga0075422_102640661	3300006196	Populus Rhizosphere	MRGTMLAVLMALLAGTALAGTGDSAIGNETPNAEQTQDKAEADTADEAKEPEPFKVPAGYQAKTRGKKMVYCKKSMESGTRFSQERCYSEEQLRAMTVSREQEQANFDQSRKVCANVESCNTN*
Ga0075433_100040608	3300006852	Populus Rhizosphere	MRGTMLAVLMALLAGTAFAGTGDSAIGNETPNAAQAQDKAEADTADEAKEPEPFKVPAGYQAKTRGKKTVYCKKSMESGTRFAQERCYSEEQLRAMTVSRDQEQANFDQSRKVCANVESCNTN*
Ga0075434_1000067457	3300006871	Populus Rhizosphere	MRGTMLAVLMALLAGTAFAGTGDSAIGNETPNAAQAQDKAEADTADEAKEPEPFKVPAGYQAKTRGKKTVYCKKSIESGTRFAQERCYSEEQLRAMTVSRDQEQANFDQSRKVCANVESCNTN*
Ga0075419_104071033	3300006969	Populus Rhizosphere	GTMLAVLMALLAGTALAGTGDSAIGNETPNAEQAQDKAEADTADEAKEPEPFKVPAGYQAKTRGKKMVYCKKSMESGTRFSQERCYSEEQLRAMTVSREQEQANFDQSRKVCANVESCNTN*
Ga0105095_100271393	3300009053	Freshwater Sediment	MMLAVLMAFLAGTALAQDSDSAIGNETPTADQAQDKAKTDTADEAKEPEEFKVPPGYQAKQRGKKMLYCKKSLESGTRFSQEKCYSETQLREMELAREQDQSTFEQNRKVCANPETCAGG
Ga0105106_108435261	3300009078	Freshwater Sediment	MMLTVLAAFLASPALADPGAIGNETPTAEQAPDKAVSETVNEAGEAEPFKVPAGYQPKKRGKKVVYCKKAMESGTRFSQEKCYSEDQLRAMSAERDQDQANFDQTRKVCANPESCAGG*
Ga0105107_100121153	3300009087	Freshwater Sediment	MMLTVLTAFLMSTALASVASANPGAIGNETPTAEQAPDKAASEAVEEAKELEPFKVPAGYQPKTRGKKVVYCKKAMESGTRFAQEKCYSEHQLRAMSAEREQNQADIDQTRRVCVTPESCAGT*
Ga0111539_101293392	3300009094	Populus Rhizosphere	MMRGTMLAVLMALLAGTAFAGTGDSAIGNETPNAAQAQDKTEADTADEAKEPEPFKVPAGYQAKTRGKKTVYCKKSMESGTRFAQERCYSEEQLRAMTVSRDQEQANFDQSRKVCANVESCNTN*
Ga0075418_103997891	3300009100	Populus Rhizosphere	MLAVLMALLAGTALAGTGDSAIGNETPNAEQTQDKAEADTADEAKEPEPFKVPAGYQAKTRGKKMVYCKKSMESGTRFSQERCYSEEQLRAMTVSREQEQANFDQSRKVCANVESCNTN*
Ga0105243_112611361	3300009148	Miscanthus Rhizosphere	MMLVVLMAFAVGPALASEGDSAIGNDTPTADQAQDKAAADTADEAKEPEPFKVPAGYQAKQRGKKTVYCKKAMESGTRFSQEKCFSEETLRAMEASRNEDQAKL
Ga0111538_103728154	3300009156	Populus Rhizosphere	MMRGTMLAVLMALLAGTAFAGTGDSAIGNETPNAAQAQDKAEADTADEAKEPEPFKVPAGYQAKTRGKKTVYCKKSIESGTRFAQERCYSEEQLRAMTVSRDQEQANFDQSRKVCANVESCNTN*
Ga0111538_107119102	3300009156	Populus Rhizosphere	MMRGTMLAVLMALLTGTAFAGTGDSAIGNETPNAAQAQDKTEADTADEAKEPEPFKVPAGYQAKTRGKKTVYCKKSMESGTRFAQERCYSEEQLRAMTVSREEDQANFDQSRKVCANVESCNTN*
Ga0105242_113998951	3300009176	Miscanthus Rhizosphere	MMLVVLMAFVAGPALASDGDSAIGNDTPTADQAQDKAAADTADEAKEPEPFKVPAGYQAKQRGKKTVYCKKAMESGTRFSQEKCFSEETLRAMEASRNEDQAKLDQTRKICASVDNCSGG
Ga0131092_102664682	3300009870	Activated Sludge	MMLTVLMALLAGTAFAGTGDSAIGNDTPTADQAQDKVEADTADGAKEAEPFKVPAGYQAKSRGKKTVYCKKSMESGTRFSQEKCYSEEQLRAMDASREEESAKLEQTRKVCASLENCSGG
Ga0131077_1000329838	3300009873	Wastewater	MMLAALMAFAVGPAVARADASAIGNDTPTADQAQDKVKDETTNEAAEAAPFRVPAGYQPKVRGKKTVYCKKAMESGTRFSQVKCYSEEQLRAMQASQEEEATKLDQTRKVCANTDSCSGG
Ga0105030_1002533	3300009987	Switchgrass Rhizosphere	MMLAVLAAFLAGTAVAGTGDSAIGNDTPTADQAQDKAEAETTEGAKEAPPFKVPAGYQAKSRGKKTVYCRKSMESGTRFSQERCYSEDQLRAMSASQEEEAAKLDQTRKVCANLENCGGG
Ga0133939_11090482	3300010051	Industrial Wastewater	MVIGVFLAASAFAEPTAIGNEIPTAEQAPDKTAAEPTDEAREPAAFKVPAGYQPKKRGKKVVYCKKSMESGTRFAQEKCYSEDQLRAMSAEREQDQANFEQTRKVCASSESCAGG*
Ga0126377_117700252	3300010362	Tropical Forest Soil	MRGTMLAILMALLAGTALAGTGDSAIGNETPNADQAQDKAEADTADEAKEPEPFKVPAGYQAKQRGKKTVYYKKSMESGTRFSQERCFSEEQLRAMTASREQDQANFDQSRKVCANLESCSTN*
Ga0126377_118075982	3300010362	Tropical Forest Soil	AVLMALLAGTALAGTGDSAIGNETPNADQAQDKAEADTADEAKEPEPFKVPAGYTAKTRGKKVVYCKKSMESGTRFSQERCFSEEQLRAMTVSHEQDQANFDQSRKVCANAESCNTN*
Ga0126377_133139831	3300010362	Tropical Forest Soil	GSRMMRGTMLAILMALLAGTALLAGTALAGTGDSAIGNETPNADQAQDKAAADTADEAKEPEPFKVPAGYTAKTRGKKTVYCRKSIESGTRFSQERCFSEDQLRAMTVNQEQDQAKFDQSRKVCANVESCNTK*
Ga0134127_106889722	3300010399	Terrestrial Soil	MMLVVLMAFVAGPALASDGDSAIGNDTPTADQAQDKAAADTADEAKEPEPFKVPAGYQAKQRGKKTVYCKKAMESGTRFSQEKCYSEETLRAMEVSRSEDQAKLDQTRKICANLENCSGG
Ga0134122_124877312	3300010400	Terrestrial Soil	AVLMAFLTGTALAGTGDSAIGNETPNADQARDKAEADTADEAKEPEPFKVPAGYTAKQRGKKTVYCKKSMESDTRVAQERCFSEDQLRAMSASQEQEQANFDQARKVCANVESCNTN*
Ga0127502_100732531	3300011333	Soil	KRERVMRGMMLAVVMAFLAGSALAGVGDSAIGNETPTAEGAPDKAKSEAVDNAQAPEPFKVPAGYQVKKRGKKTVYCRKAMESGTRFSQEKCYSEETLRAMEATKEQDQANFDQARKVCASTEACASN*
Ga0127502_102979072	3300011333	Soil	MMRGMVLAVLMGLVSGYAFAADNDSAIGNETPTADQAQDKAEADTTDEAKPEEPFKVPAGYQAKKRGKKMVYCKKAMESGTRFSQEKCYSEETLRAMEEDRAQDQVTLDQSRKVCGTAESCSAN*
Ga0127502_105328221	3300011333	Soil	MRGMMLAILMAFVSGTAFAADNDSAIGNETPTADQAQDKAESETTDEAKPAEPFKVPVGYQPKKRGQKTVYCKKAMESGTRFSQEKCYSEEQLRAQEAERELEQANFDQNRKVCASVESCGTN*
Ga0137455_11630901	3300011429	Soil	MMLAALMALLASAALAQDGDSAIGNETPTADQAQDKTETDTSDEAKEPAEFKVPAGYQAKKRGKKVVYCKKSMESGTRFSQEKCFNEEQLREMELAREQDQTTFDQNRKVCSNLESCSGG
Ga0157301_102554402	3300012911	Soil	MRGTMLAVLMALLAGTALAGTGDSAIGNETPNADQAQDKAEADTADEAKEPEPFKVPAGYQAKTRGKKVVYCKKSMESGTRFSQERCYSEEQLRAITVSREQEQANFDQSRKVCANVESCNTN*
Ga0164241_105854871	3300012943	Soil	MRGMMLAVLVAFVAGPALAGTGDSANGNDTPTADQAQDKVEADTADEAKEAAPFKIPAGYLTKSRGKKTVYCKKSIESGTRFSQEKCYSEEQLRAMEASRSEESAKLDQTRKVCASLENCSGG*
Ga0157378_130041402	3300013297	Miscanthus Rhizosphere	MMLVVLMAFVAGPALASDGDSAIGNDTPTADQAQDKAAADTADEAKEPEPFKVPAGYQAKQRGKKTVYCKKAMESGTRFSQEKCYSEETLRAMIARRRVPRSLQKDREAPGVR*
Ga0075305_10024525	3300014295	Natural And Restored Wetlands	MMLAVLAAFLSGTALANPGAIGNETPTAEQAPDKAVAETVNEAGESEPFKVPAGYQPKKRGKRVVYCKKAMESGTRFSQEKCYSEEQLRAMSVERDQDQANFDQTRKVCANPESCAGG*
Ga0075351_11783721	3300014318	Natural And Restored Wetlands	MMLAALMAFVAGTALAGTGDSAIGNDTPTADQAQDKAEADTADGAKEAEPFKVPAGYQAKSRGKKTVYCKKSMESGTRFAQERCYSEEQLRAMDASREEESAKLDQTRKVC
Ga0173483_107279871	3300015077	Soil	STMRGTMLAVLMALLAGTALAGTGDSAIGNETPNADQAQDKAEADTADEAKEPEPFKVPAGYQAKTRGKKVVYCKKSMESGTRFSQERCYSEEQLRAMTVSREQEQANFDQSRKVCANVESCNTN*
Ga0132258_117517193	3300015371	Arabidopsis Rhizosphere	MMLVVLMAFAVGPALASEGDSAIGNDTPTADQAQDKAAADTADEAKEPEPFKVPAGYQAKQRGKKTVYCKKAMESGTRFSQEKCFSEETLRAMEASRNEDQAKLDQTRKICASVDNCSGG
Ga0132256_1008849962	3300015372	Arabidopsis Rhizosphere	MMLVVLMAFAVGPAFASEGDSAIGNDTPTADQAQDKAAADTADEAKEPEPFKVPAGYQAKQRGKKTVYCKKAMESGTRFSQEKCFSEETLRAMEASRNEDQAKLDQTRKICASVDNCSGG
Ga0132256_1009874962	3300015372	Arabidopsis Rhizosphere	MMRGTMLAVLMALLTGTAFAGTGDSAIGNETPNAAQAQDKTEADTADEAKEPEPFKVPAGYQAKTRGKKTVYCKKSMESGTRFAQERCYSEEQLRAMTVSRDQEQANFDQSRKVCANVESCNTN*
Ga0132257_1018326251	3300015373	Arabidopsis Rhizosphere	PAFASDGDSAIGNDTPTADQAQDKAAADTADEAKEPEPFKVPAGYQAKQRGKKTVYCKKAMESGTRFSQEKCFSEETLRAMEASRNEDQAKLDQTRKICASVDNCSGG*
Ga0163161_105277322	3300017792	Switchgrass Rhizosphere	MRGMMLVVLMAFAVGPALASEGDSAIGNDTPTADQAQDKAAADTADEAKEPEPFKVPAGYQAKQRGKKTVYCKKAMESGTRFSQEKCFSEETLRAMEASRNEDQAKLDQTRKICASVDNCSGG
Ga0190272_100989393	3300018429	Soil	MRGMTLAVLMAFLAGTALAQEGDSAIGNETPSADQAQDKVETDTADEAKEPEEFKVPAGFLVKKRGKKTVYCKKAMESGTRFSQEKCYNEEQLREMATAREQDQATLDQNRKVCANLESCSGG
Ga0190272_124811562	3300018429	Soil	ALAQEGDSAIGNETPTADQAQDKTETETADEAKVPEEFKIPAGYQAKKRGKKTVYCKKAMESGTRFSQEKCYNEEQLRAMSTEHEQDQTTFDQNRKICSNQDSCGGG
Ga0190271_118446691	3300018481	Soil	MRSMMLILTAFLTSVALADPGAIGNETPTAEQAPDKAASETVDEAKELEPFKVPAGYQTKTRGKKVVYCKKALESGTRFSQEKCYSEEQLRTMSAERDQDQSNFDQTRKVCSTPESCA
Ga0190271_122216891	3300018481	Soil	MRSMMLILTACLTSAALADPGAIGNETPTAEQAPDKAVAETVDEAGEAEPFKVPAGYQPKKRGKKVVYCKKAMESGTRFSQEKCYSEDQLRAMSAERDQDQANFDQTRKVCANPESCAGN
Ga0173481_100572922	3300019356	Soil	MRGTMLAVLMALLAGTALAGTGDSAIGNETPNADQAQDKAEADTADEAKEPEPFKVPAGYQAKTRGKKVVYCKKSMESGTRFSQERCYSEEQLRAMTVSREQEQANFDQSRKVCANVESCNTN
Ga0187893_100524193	3300019487	Microbial Mat On Rocks	MRGTMLTVLLAFLAIPILAEAEPSAIGNETPTAEQAPDKAKSEAVDEAEAPEPFKVPAGYHAKKRGKKMVYCKKAMESGTRFSQEKCYSEEQLRAMESSREEEQASFDQTRKVCANVESCGSN
Ga0187893_103942293	3300019487	Microbial Mat On Rocks	MQSMMLVVAMALLTSTALAVEGDSAIGNETPTASQAQDKVAAETVDEAKSEEEFKVPVGYQAKKRGKKMVYCKKSMESGTRFSQERCFSEEQLRAMEAEQEQDQAAFDQGRKVCATAESCAGN
Ga0163153_101609361	3300020186	Freshwater Microbial Mat	MRSMMLTALAAFMTSTALADPGAIGNETPTAEQAPDKAASETVDEAKEPEPFKVPAGYQAKTRGKKVVYCKKAMESGTRFSQEKCYSEDQLRAMDAEREQDQANFDQTRKVCASSESCAG
Ga0163150_102541232	3300020195	Freshwater Microbial Mat	MRGMMLAVLMSFLAGNALAENGDSAIGNETPTADQAQDKAEAETTDAAKEAEPFKVPAGYQAKKRGKNLVYCKKAMESGTRFSQEKCYSEEQLRAMEATREQDQADFDKTRKICASVDNCGGG
Ga0210142_10668192	3300025552	Natural And Restored Wetlands	MRGMMLAVLMALFADGALAGASDSAIGNDTPTADQARDKVEPETADEAKEPEPFKIPAGYQLKKRGKRVVYCKKSMESGTRFSQERCFSEDQLRAIEMTRDQDQAEFDQTRKVCAAVENCGSG
Ga0210121_10335131	3300025555	Natural And Restored Wetlands	AAFLSGTALANPGAIGNETPTAEQAPDKAVAETVNEAGESEPFKVPAGYQPKKRGKRVVYCKKAMESGTRFSQEKCYSEEQLRAMSVERDQDQANFDQTRKVCANPESCAGG
Ga0207645_106241121	3300025907	Miscanthus Rhizosphere	MRGMMLVVLMAFVAGPALASDGDSAIGNDTPTADQAQDKAAADTADEAKEPEPFKVPAGYQAKQRGKKTVYCKKAMESGTRFSQEKCYSEETLRAMEVSRSEDQAKLDQTRKICANLENCSGG
Ga0207659_110745291	3300025926	Miscanthus Rhizosphere	MRGTMLAVLMALLAGTAFAGTGDSAIGNETPNAAQAQDKTEADTADEAKEPEPFKVPAGYQAKTRGKKTVYCKKSMESGTRFAQERCYSEEQLRAMTVSREEDQANFDQSRKVCANVESCNTN
Ga0207659_111770562	3300025926	Miscanthus Rhizosphere	MRGMMLVVLMAFVVGPALASDGDSAIGNDTPTADQAQDKAAADTADEAKEPEPFKVPAGYQAKQRGKKTVYCKKAMESGTRFSQEKCFSEETLRAMEASRNEDQAKLDQTRKICASVDNCSGG
Ga0207701_105964751	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MRGMMLVVLMAFVAGPALASDGDSAIGNDTPTADQAQDKAAADTADEAKEPEPFKVPAGYQAKQRGKKTVYCKKAMESGTRFSQEKCFSEETLRAMEASRNEDQAKLDQTRKICASVDNCSGG
Ga0207704_113082582	3300025938	Miscanthus Rhizosphere	MRGMMLVVLMAFAVGPALASEGDSAIGNDTPTADQAQDKAAADTADEAKEPEPFKVPAGYQAKQRGKKTVYCKKAMESGTRFSQEKCFSEETLRAMEASRNEDQ
Ga0208653_10114182	3300026012	Natural And Restored Wetlands	LAAFLSGTALANPGAIGNETPTAEQAPDKAVAETVNEAGESEPFKVPAGYQPKKRGKRVVYCKKAMESGTRFSQEKCYSEEQLRAMSVERDQDQANFDQTRKVCANPESCAGG
Ga0208001_10009442	3300026017	Natural And Restored Wetlands	LIRGGRTETNQGSRLMRSMMLAVLAAFLSGTALANPGAIGNETPTAEQAPDKAVAETVNEAGESEPFKVPAGYQPKKRGKRVVYCKKAMESGTRFSQEKCYSEEQLRAMSVERDQDQANFDQTRKVCANPESCAGG
Ga0207675_1017005132	3300026118	Switchgrass Rhizosphere	MRGMMLVVLMAFVAGPALASDGDSAIGNDTPTADQAQDKAAADTADEAKEPEPFKVPAGYQAKQRGKKTVYCKKAMESGTRFSQEKCYSEETLRAMEVSRSEDQAKLDQT
Ga0209968_10737731	3300027526	Arabidopsis Thaliana Rhizosphere	MRSMMLAILMAVVTASAFAGDNENAIGNETPTADQAQDKASADTTDEATPEEPFKVPAGYQPKKRGKKMVYCKKAMESGTRFSQEKCYSEEQLRAMEGERDQDQVTLDQSRKVCGTAESCSAN
Ga0210002_10093802	3300027617	Arabidopsis Thaliana Rhizosphere	MRSMMLAILMAVVTASAFAGDNENAIGNETPTADQAQDKASADTTDEATPEEPFKVPAGYQPKKRGKKMVYCKKAMESGTRFSQEKCYSEDQLRALEAEREQEQVTLDQNRKVCGTVESCGAN
Ga0209592_11336321	3300027731	Freshwater Sediment	AFLAGTALAQDSDSAIGNETPTADQAQDKAKTDTADEAKEPEEFKVPPGYQAKQRGKKMLYCKKSLESGTRFSQEKCYSETQLREMELAREQDQSTFEQNRKVCANPETCAGG
Ga0209706_100036658	3300027818	Freshwater Sediment	MRSMMLTVLTAFLMSTALASVASANPGAIGNETPTAEQAPDKAASEAVEEAKELEPFKVPAGYQPKTRGKKVVYCKKAMESGTRFAQEKCYSEHQLRAMSAEREQNQADIDQTRRVCVTPESCAGT
Ga0209706_100173155	3300027818	Freshwater Sediment	MRSMMLTVLAAFLASPALADPGAIGNETPTAEQAPDKAVSETVNEAGEAEPFKVPAGYQPKKRGKKVVYCKKAMESGTRFSQEKCYSEDQLRAMSAERDQDQANFDQTRKVCANPESCAG
Ga0209486_104835632	3300027886	Agricultural Soil	MRGMMLAILMAFVSGTAFAADNDSAIGNETPTADQAQDKAESETTDEAKPAEPFKVPVGYQPKKRGQKTVYCKKAMESGTRFSQEKCYSEEQLRAQEAERELEQA
Ga0207428_103637462	3300027907	Populus Rhizosphere	MRGTMLAVLMALLAGTALAGTGDSAIGNETPNAEQTQDKAEADTADEAKEPEPFKVPAGYQAKTRGKKMVYCKKSMESGTRFSQERCYSEEQLRAMTVSREQEQANFDQSRKVCANVESCNTN
Ga0209705_100196423	3300027979	Freshwater Sediment	MRGMMLAVLMAFLAGTALAQDSDSAIGNETPTADQAQDKAKTDTADEAKEPEEFKVPPGYQAKQRGKKMLYCKKSLESGTRFSQEKCYSETQLREMELAREQDQSTFEQNRKVCANPETCAGG
Ga0268299_100054966	3300028648	Activated Sludge	MRSMMLAVLGAFLATTAMAEPGAIGNETPTAEQAPDKAASEAVEDAGEAEPFKVPAGYQPKKRGKKVVYCKKAMESGTRFSQEKCYSEEQLRAMSAERDQEQASFDQTRKVCASPEACAG
Ga0302046_1000112718	3300030620	Soil	MRSMMLAVLVTFLCGTGLAQAGDGAIGNETPIADQAKDKVETEAAAEAKEPEEFEIPPGYHAKKRGRKVVYCQKSMESGTRFSQEKCYDETQLRAMDMAREQDQTTFDQSRKICSNLEACGGG
Ga0307505_100367242	3300031455	Soil	MRSMMLAVLVVLLCSAGFAQASDSAIGNETATADQAQDKAQTDTAAEAKAPHEFKVPAGYRAKKRGKKVVYCKKGLESGTRFAQEHCYNEEQLRELELKREQENAAFDQSRKVCGNLESCAGT
Ga0307505_102324362	3300031455	Soil	MRSMMLTVLAAFLASTALADPGAIGNETPTAEQAPDKAVAETVDEAGEAEPFKVPAGYQPKKRGKKVVYCKKAMESGTRFAQEKCYSEDQLRAMSAEREQDQANFDQTRKVCANPESCAG
Ga0307408_1000158263	3300031548	Rhizosphere	MRGMVLAVLMGLVSGYAFAADNDSAIGNETPTADQAQDKAEADTTDEAKPEEPFKVPAGYQPKKRGKKMVYCKKAIESGTRFSQEKCYSEETLRAMEDERAQDQVTLDQSRKVCGTAESCSAN
Ga0307468_1001513872	3300031740	Hardwood Forest Soil	MCYRKALEVLNLWEKGSRTMRGMMLVVLMAFVAGPALASDGDSAIGNDTPTADQAQDKAAADTADEAKEPEPFKVPAGYQAKQRGKKTVYCKKAMESGTRFSQEKCYSEETLRAMEVSRSEDQAKLDQTRKICANLENCSGG
Ga0307468_1023033562	3300031740	Hardwood Forest Soil	VGPALASDGDSAIGNDTPTADQAQDKAAADTADEAKEPEPFKVPAGYQAKQRGKKTVYCKKAMESGTRFSQEKCFSEETLRAMEASRNEDQAKLDQTRKICASVDNCSGG
Ga0307413_100973661	3300031824	Rhizosphere	MRGMVLAVLMGLVSGYAFAADNDSAIGNETPTADQAQDKAEADTTDEAKPEEPFKVPAGYQPKKRGKKMVYCKKAIESGTRFSQEKCYSEETLRAMEEERAQ
Ga0307413_111288272	3300031824	Rhizosphere	MRGMMLAVLMGLVSGYASAADNDSAIGNETPTADQAQDKAEADTTDEAKPEEPFKVPAGYQPKKRGKKMVYCKKAMESGTRFSQEKCYSEETLRAMEEERAQDQVTLDQSRKVCGTTESCSAN
Ga0307410_112854212	3300031852	Rhizosphere	MRGMMLAVLMGLVSGYASAADNDSAIGNETPTADQAQDKAEADTTDEAKPEEPFKVPAGYQPKKRGKKMVYCKKAMESGTRFSQEKCYSEETLRAMEEERAQDQVTLDQSRKVCGTAESCSAN
Ga0310900_107396392	3300031908	Soil	MRGMMLVVVMAFAVGPALASEGDSAIGNDTPTADQAQDKAAADTADEAKEPEPFKVPAGYQAKQRGKKTVYCKKAMESGTRFSQEKCFSEETLRAMEASRNEDQAKLDQTRKICASVDNCSGG
Ga0307414_108739002	3300032004	Rhizosphere	MRGMVLAVLMGLVSGYAFAADNDSAIGNETPTADQAQDKAEADTTDEAKPEEPFKVPAGYQPKKRGKKMVYCKKAMESGTRFSQEKCYSEETLRAMEEERAQDQVTLDQSRKVCGTAESCSAN
Ga0315912_101988862	3300032157	Soil	MRGMMLAILMAFVAGPAFAADNDSAIGNETPTADQAQDKAEPETTDEAKPEEPFKVPVGYQAKKRGTKTMYCKKAMESGTRFSQEKCYSEEQLRAQEAAREQEQANFDQNRKVCANVESCGAN
Ga0315912_106454911	3300032157	Soil	MRGMMLAILMAFVAGMAFAADNDSAIGNETPTADQAQDKAEPDTADEAKPVEPFKVPVGYQAKKRGQKTVYCKKAMESGTRFSQEKCYSEEQLRAQEAEHEQEQANFDQNRKV
Ga0315912_112138742	3300032157	Soil	MRSMMLTVLAAFLTSTALADPGAIGNETPTAEQAPDKAVSETVDEAGESEPFKVPAGYQPKKRGKKVVYCKKAMESGTRFSQEKCYSEEQLRAMDAEREQDQANFDQTRKVCATPESCAT
Ga0310810_101494842	3300033412	Soil	MRGTMLAVLMALLTGTAFAGTGDSAIGNETPNAAQAQDKTEADTADEAKEPEPFKVPAGYQAKTRGKKTVYCKKSMESGTRFAQERCYSEEQLRAMTVSREEDQANFDQSRKVCANVESCNTN
Ga0214471_101758642	3300033417	Soil	MRGMMLAVLMAFFAGTALAQDGDNAIGNETPTADQAQDKAKTDTADEAKEPEEFKIPAGYQVKKRGKKLVYCKKSMESGTRFAQEKCYEEAQLREIELAREQDQSTFDQNRKVCPNLEACGGG
Ga0370490_0060988_545_901	3300034128	Untreated Peat Soil	MMLTVLAAFLASAALADPGAIGNETPTAEQAPDKAASEAVEEAKEQEPFKVPAGYQPKTRGKKVVYCKKAMESGTRFAQEKCYSEDQLRAMSAEREQDQANFEQSRKVCANPESCAGS
Ga0364943_0106258_627_983	3300034354	Sediment	MMLLVLMAFVAGPALASDGDSAIGNDTPTADQAQDKAAADTADEAKEPEPFKVPAGYLVKQRGKKTVYCKKAMESGTRFSQEKCYSEETLREMEVSRSEDQAKLDQTRKICANLENCSG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090594

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences