Metagenome Family F090577

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090577
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	49 residues
Representative Sequence	MLRVEVMGVSLKTEKRRSQCPVFSFRQRVRRAEGLPGMTTEDLHG
Number of Associated Samples	47
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	27.78 %
% of genes near scaffold ends (potentially truncated)	99.07 %
% of genes from short scaffolds (< 2000 bps)	88.89 %
Associated GOLD sequencing projects	43
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.15

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (65.741 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment (39.815 % of family members)
Environment Ontology (ENVO)	Unclassified (51.852 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (61.111 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 8.22% Coil/Unstructured: 91.78%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.15
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.15
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00005	ABC_tran	2.78
PF04055	Radical_SAM	2.78
PF08753	NikR_C	2.78
PF10589	NADH_4Fe-4S	1.85
PF00459	Inositol_P	1.85
PF13710	ACT_5	1.85
PF07883	Cupin_2	1.85
PF02085	Cytochrom_CIII	1.85
PF02403	Seryl_tRNA_N	1.85
PF00694	Aconitase_C	1.85
PF04909	Amidohydro_2	1.85
PF04015	DUF362	1.85
PF13525	YfiO	1.85
PF00155	Aminotran_1_2	1.85
PF01025	GrpE	0.93
PF09339	HTH_IclR	0.93
PF02687	FtsX	0.93
PF00227	Proteasome	0.93
PF00348	polyprenyl_synt	0.93
PF14125	DUF4292	0.93
PF01032	FecCD	0.93
PF04468	PSP1	0.93
PF02452	PemK_toxin	0.93
PF02599	CsrA	0.93
PF13607	Succ_CoA_lig	0.93
PF07521	RMMBL	0.93
PF01479	S4	0.93
PF12225	DUF5981	0.93
PF01212	Beta_elim_lyase	0.93
PF02436	PYC_OADA	0.93
PF03972	MmgE_PrpD	0.93
PF01977	UbiD	0.93
PF07690	MFS_1	0.93
PF01266	DAO	0.93
PF10431	ClpB_D2-small	0.93
PF01314	AFOR_C	0.93
PF01902	Diphthami_syn_2	0.93
PF04545	Sigma70_r4	0.93
PF02597	ThiS	0.93
PF01797	Y1_Tnp	0.93
PF03063	Prismane	0.93
PF01370	Epimerase	0.93
PF13237	Fer4_10	0.93
PF00700	Flagellin_C	0.93
PF03401	TctC	0.93
PF01434	Peptidase_M41	0.93
PF00958	GMP_synt_C	0.93
PF00294	PfkB	0.93
PF01297	ZnuA	0.93
PF00501	AMP-binding	0.93
PF13561	adh_short_C2	0.93
PF13847	Methyltransf_31	0.93
PF08281	Sigma70_r4_2	0.93
PF06480	FtsH_ext	0.93
PF00571	CBS	0.93
PF00282	Pyridoxal_deC	0.93
PF12399	BCA_ABC_TP_C	0.93
PF02283	CobU	0.93
PF02730	AFOR_N	0.93
PF13286	HD_assoc	0.93
PF00909	Ammonium_transp	0.93
PF00892	EamA	0.93
PF04324	Fer2_BFD	0.93
PF13247	Fer4_11	0.93
PF00588	SpoU_methylase	0.93
PF02541	Ppx-GppA	0.93
PF01048	PNP_UDP_1	0.93
PF12706	Lactamase_B_2	0.93
PF00128	Alpha-amylase	0.93
PF00528	BPD_transp_1	0.93
PF03916	NrfD	0.93
PF00885	DMRL_synthase	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0864	Metal-responsive transcriptional regulator, contains CopG/Arc/MetJ DNA-binding domain	Transcription [K]	2.78
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	1.85
COG1167	DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain	Transcription [K]	1.85
COG2006	Uncharacterized conserved protein, DUF362 family	Function unknown [S]	1.85
COG2414	Aldehyde:ferredoxin oxidoreductase	Energy production and conversion [C]	1.85
COG0248	Exopolyphosphatase/pppGpp-phosphohydrolase	Signal transduction mechanisms [T]	1.85
COG0172	Seryl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	1.85
COG0076	Glutamate or tyrosine decarboxylase or a related PLP-dependent protein	Amino acid transport and metabolism [E]	1.85
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	0.93
COG5405	ATP-dependent protease HslVU (ClpYQ), peptidase subunit	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG1344	Flagellin and related hook-associated protein FlgL	Cell motility [N]	0.93
COG1523	Pullulanase/glycogen debranching enzyme	Carbohydrate transport and metabolism [G]	0.93
COG1551	sRNA-binding carbon storage regulator CsrA	Signal transduction mechanisms [T]	0.93
COG1774	Cell fate regulator YaaT, PSP1 superfamily (controls sporulation, competence, biofilm development)	Signal transduction mechanisms [T]	0.93
COG4992	Acetylornithine/succinyldiaminopimelate/putrescine aminotransferase	Amino acid transport and metabolism [E]	0.93
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	0.93
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.93
COG1977	Molybdopterin synthase sulfur carrier subunit MoaD	Coenzyme transport and metabolism [H]	0.93
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	0.93
COG3484	Predicted proteasome-type protease	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG3033	Tryptophanase	Amino acid transport and metabolism [E]	0.93
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	0.93
COG2087	Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase	Coenzyme transport and metabolism [H]	0.93
COG2102	Diphthamide synthase (EF-2-diphthine--ammonia ligase)	Translation, ribosomal structure and biogenesis [J]	0.93
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	0.93
COG2104	Sulfur carrier protein ThiS (thiamine biosynthesis)	Coenzyme transport and metabolism [H]	0.93
COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	Defense mechanisms [V]	0.93
COG2820	Uridine phosphorylase	Nucleotide transport and metabolism [F]	0.93
COG3280	Maltooligosyltrehalose synthase	Carbohydrate transport and metabolism [G]	0.93
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.93
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.93
COG0519	GMP synthase, PP-ATPase domain/subunit	Nucleotide transport and metabolism [F]	0.93
COG0043	3-polyprenyl-4-hydroxybenzoate decarboxylase	Coenzyme transport and metabolism [H]	0.93
COG0054	6,7-dimethyl-8-ribityllumazine synthase (Riboflavin synthase beta chain)	Coenzyme transport and metabolism [H]	0.93
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	0.93
COG0112	Glycine/serine hydroxymethyltransferase	Amino acid transport and metabolism [E]	0.93
COG0142	Geranylgeranyl pyrophosphate synthase	Coenzyme transport and metabolism [H]	0.93
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.93
COG0219	tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain	Translation, ribosomal structure and biogenesis [J]	0.93
COG0296	1,4-alpha-glucan branching enzyme	Carbohydrate transport and metabolism [G]	0.93
COG0366	Glycosidase/amylase (phosphorylase)	Carbohydrate transport and metabolism [G]	0.93
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.93
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.93
COG1152	CO dehydrogenase/acetyl-CoA synthase alpha subunit	Energy production and conversion [C]	0.93
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.93
COG0565	tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase	Translation, ribosomal structure and biogenesis [J]	0.93
COG0566	tRNA G18 (ribose-2'-O)-methylase SpoU	Translation, ribosomal structure and biogenesis [J]	0.93
COG0576	Molecular chaperone GrpE (heat shock protein HSP-70)	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.93
COG0638	20S proteasome, alpha and beta subunits	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG0775	Nucleoside phosphorylase/nucleosidase, includes 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase MtnN and futalosine hydrolase MqnB	Nucleotide transport and metabolism [F]	0.93
COG0813	Purine-nucleoside phosphorylase	Nucleotide transport and metabolism [F]	0.93
COG1003	Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain	Amino acid transport and metabolism [E]	0.93
COG0004	Ammonia channel protein AmtB	Inorganic ion transport and metabolism [P]	0.93
COG1151	Hydroxylamine reductase (hybrid-cluster protein)	Energy production and conversion [C]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.67 %
Unclassified	root	N/A	33.33 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.67 %
Unclassified	root	N/A	33.33 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.74 %
Unclassified	root	N/A	33.33 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.93 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	38.89 %
Unclassified	root	N/A	33.33 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.85 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	0.93 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.93 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	38.89 %
Unclassified	root	N/A	33.33 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.85 %
Candidatus Omnitrophica	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica	0.93 %
Candidatus Bathyarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	0.93 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	38.89 %
Unclassified	root	N/A	33.33 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1.85 %
unclassified Candidatus Bathyarchaeota	no rank	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota	0.93 %
Candidatus Omnitrophica	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.33 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	11.11 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	5.56 %
Syntrophobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales	1.85 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1.85 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	0.93 %
Deltaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis	0.93 %
Candidatus Omnitrophica	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.33 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	11.11 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.70 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1.85 %
delta proteobacterium NaphS2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS2	0.93 %
Candidatus Desulfofervidaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Candidatus Desulfofervidaceae	0.93 %
Deltaproteobacteria bacterium RBG_16_48_10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_48_10	0.93 %
Syntrophaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	0.93 %
Syntrophobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae	0.93 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	0.93 %
Candidatus Omnitrophica	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.33 %
unclassified Desulfobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae	6.48 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.70 %
Desulfatiglans	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatiglans	2.78 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1.85 %
Candidatus Desulfofervidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Candidatus Desulfofervidaceae → Candidatus Desulfofervidus	0.93 %
unclassified Syntrophaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae	0.93 %
delta proteobacterium NaphS2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS2	0.93 %
Deltaproteobacteria bacterium RBG_16_48_10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_48_10	0.93 %
Syntrophobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae	0.93 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	0.93 %
Candidatus Omnitrophica	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.33 %
Desulfobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	4.63 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.70 %
Desulfatiglans anilini	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatiglans → Desulfatiglans anilini	2.78 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1.85 %
Desulfobacteraceae bacterium 4572_87	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium 4572_87	0.93 %
Desulfobacteraceae bacterium 4484_190.2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium 4484_190.2	0.93 %
Syntrophaceae bacterium PtaB.Bin095	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin095	0.93 %
Candidatus Desulfofervidus auxilii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Candidatus Desulfofervidaceae → Candidatus Desulfofervidus → Candidatus Desulfofervidus auxilii	0.93 %
delta proteobacterium NaphS2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS2	0.93 %
Deltaproteobacteria bacterium RBG_16_48_10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_48_10	0.93 %
Syntrophobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae	0.93 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	0.93 %
Candidatus Omnitrophica	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001213\|JGIcombinedJ13530_107255060	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300002961\|JGI11641J44799_10051359	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1186	Open in IMG/M
3300002961\|JGI11641J44799_10111345	Not Available	768	Open in IMG/M
3300004066\|Ga0055484_10212795	Not Available	531	Open in IMG/M
3300004481\|Ga0069718_15233578	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	712	Open in IMG/M
3300005205\|Ga0068999_10124361	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica	531	Open in IMG/M
3300006224\|Ga0079037_100160275	All Organisms → cellular organisms → Bacteria	1980	Open in IMG/M
3300006224\|Ga0079037_100322651	All Organisms → cellular organisms → Bacteria	1440	Open in IMG/M
3300006224\|Ga0079037_100485606	All Organisms → cellular organisms → Bacteria	1184	Open in IMG/M
3300006224\|Ga0079037_100850468	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Candidatus Desulfofervidaceae → Candidatus Desulfofervidus → Candidatus Desulfofervidus auxilii	898	Open in IMG/M
3300006224\|Ga0079037_101308555	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium 4484_190.2	722	Open in IMG/M
3300009075\|Ga0105090_10415895	All Organisms → cellular organisms → Bacteria	819	Open in IMG/M
3300009078\|Ga0105106_10103219	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_48_10	2099	Open in IMG/M
3300009082\|Ga0105099_10536558	Not Available	712	Open in IMG/M
3300009087\|Ga0105107_10802507	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300009087\|Ga0105107_10887305	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	621	Open in IMG/M
3300009091\|Ga0102851_10707000	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1067	Open in IMG/M
3300009091\|Ga0102851_12899746	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300009111\|Ga0115026_10118193	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1651	Open in IMG/M
3300009111\|Ga0115026_10754934	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300009131\|Ga0115027_10175143	Not Available	1341	Open in IMG/M
3300009166\|Ga0105100_10757726	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	600	Open in IMG/M
3300009167\|Ga0113563_10865040	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1030	Open in IMG/M
3300009179\|Ga0115028_10689682	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300009179\|Ga0115028_10993362	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	673	Open in IMG/M
3300009179\|Ga0115028_11941183	Not Available	517	Open in IMG/M
3300014260\|Ga0075307_1105505	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300027877\|Ga0209293_10064414	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1555	Open in IMG/M
3300027887\|Ga0208980_10174986	Not Available	1256	Open in IMG/M
3300027887\|Ga0208980_10183378	Not Available	1224	Open in IMG/M
3300027887\|Ga0208980_10384474	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	811	Open in IMG/M
3300027890\|Ga0209496_10777870	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300027897\|Ga0209254_10527334	Not Available	848	Open in IMG/M
3300027897\|Ga0209254_10855495	Not Available	610	Open in IMG/M
3300027897\|Ga0209254_11095751	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300027900\|Ga0209253_10040299	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3893	Open in IMG/M
3300027900\|Ga0209253_10267981	All Organisms → cellular organisms → Bacteria	1337	Open in IMG/M
3300027900\|Ga0209253_10306245	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1232	Open in IMG/M
3300027900\|Ga0209253_10365222	All Organisms → cellular organisms → Bacteria	1104	Open in IMG/M
3300031834\|Ga0315290_10056208	All Organisms → cellular organisms → Bacteria	3210	Open in IMG/M
3300031834\|Ga0315290_10246828	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS2	1558	Open in IMG/M
3300031834\|Ga0315290_10667257	Not Available	898	Open in IMG/M
3300031834\|Ga0315290_11730992	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	501	Open in IMG/M
3300031873\|Ga0315297_10042317	Not Available	3412	Open in IMG/M
3300031873\|Ga0315297_10380223	Not Available	1184	Open in IMG/M
3300031873\|Ga0315297_11329090	Not Available	585	Open in IMG/M
3300031873\|Ga0315297_11425300	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin095	561	Open in IMG/M
3300031949\|Ga0214473_10707083	Not Available	1098	Open in IMG/M
3300031949\|Ga0214473_11067764	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300031997\|Ga0315278_10034205	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4910	Open in IMG/M
3300031997\|Ga0315278_11646949	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	612	Open in IMG/M
3300031997\|Ga0315278_12134173	Not Available	520	Open in IMG/M
3300032143\|Ga0315292_10767666	Not Available	809	Open in IMG/M
3300032164\|Ga0315283_10082299	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatiglans → Desulfatiglans anilini	3329	Open in IMG/M
3300032164\|Ga0315283_10096017	All Organisms → cellular organisms → Bacteria	3093	Open in IMG/M
3300032164\|Ga0315283_10487014	Not Available	1340	Open in IMG/M
3300032177\|Ga0315276_11470710	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	710	Open in IMG/M
3300032342\|Ga0315286_10157969	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2433	Open in IMG/M
3300032342\|Ga0315286_10308134	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium 4572_87	1676	Open in IMG/M
3300032342\|Ga0315286_10435479	All Organisms → cellular organisms → Bacteria	1373	Open in IMG/M
3300032342\|Ga0315286_10667076	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1065	Open in IMG/M
3300032397\|Ga0315287_10142090	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2768	Open in IMG/M
3300032397\|Ga0315287_10215583	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2245	Open in IMG/M
3300032397\|Ga0315287_10587776	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1320	Open in IMG/M
3300032397\|Ga0315287_10622803	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1278	Open in IMG/M
3300032397\|Ga0315287_10689477	Not Available	1207	Open in IMG/M
3300032397\|Ga0315287_10941002	Not Available	1009	Open in IMG/M
3300032397\|Ga0315287_11236884	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300032397\|Ga0315287_11345236	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300032397\|Ga0315287_11376578	Not Available	804	Open in IMG/M
3300032401\|Ga0315275_10417158	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatiglans → Desulfatiglans anilini	1505	Open in IMG/M
3300032401\|Ga0315275_10656588	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1169	Open in IMG/M
3300032401\|Ga0315275_11170859	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	838	Open in IMG/M
3300032401\|Ga0315275_11729174	Not Available	666	Open in IMG/M
3300032516\|Ga0315273_10192257	All Organisms → cellular organisms → Bacteria	2793	Open in IMG/M
3300032516\|Ga0315273_10307532	All Organisms → cellular organisms → Bacteria	2151	Open in IMG/M
3300032516\|Ga0315273_10498957	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatiglans → Desulfatiglans anilini	1630	Open in IMG/M
3300032516\|Ga0315273_10645061	Not Available	1399	Open in IMG/M
3300032516\|Ga0315273_10739221	Not Available	1289	Open in IMG/M
3300032516\|Ga0315273_10878976	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1159	Open in IMG/M
3300032516\|Ga0315273_11232193	All Organisms → cellular organisms → Bacteria	940	Open in IMG/M
3300032516\|Ga0315273_11234745	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	939	Open in IMG/M
3300032516\|Ga0315273_11548380	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae	812	Open in IMG/M
3300032516\|Ga0315273_12752397	Not Available	559	Open in IMG/M
3300033408\|Ga0316605_11311450	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300033413\|Ga0316603_10647619	Not Available	984	Open in IMG/M
3300033413\|Ga0316603_10970531	Not Available	802	Open in IMG/M
3300033414\|Ga0316619_11597584	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	587	Open in IMG/M
3300033416\|Ga0316622_102457772	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	601	Open in IMG/M
3300033418\|Ga0316625_100623903	Not Available	886	Open in IMG/M
3300033419\|Ga0316601_102517044	Not Available	517	Open in IMG/M
3300033434\|Ga0316613_10442541	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	878	Open in IMG/M
3300033434\|Ga0316613_10703537	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	692	Open in IMG/M
3300033480\|Ga0316620_11508643	Not Available	664	Open in IMG/M
3300033480\|Ga0316620_11895103	Not Available	592	Open in IMG/M
3300033480\|Ga0316620_12523234	Not Available	511	Open in IMG/M
3300033482\|Ga0316627_100479945	All Organisms → cellular organisms → Bacteria	1097	Open in IMG/M
3300033483\|Ga0316629_10471114	Not Available	905	Open in IMG/M
3300033485\|Ga0316626_10128680	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1903	Open in IMG/M
3300033485\|Ga0316626_10598063	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	951	Open in IMG/M
3300033486\|Ga0316624_10806348	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	835	Open in IMG/M
3300033486\|Ga0316624_10970164	Not Available	765	Open in IMG/M
3300033486\|Ga0316624_11497390	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	620	Open in IMG/M
3300033489\|Ga0299912_10397672	All Organisms → cellular organisms → Bacteria	1131	Open in IMG/M
3300033489\|Ga0299912_10852372	Not Available	692	Open in IMG/M
3300033489\|Ga0299912_10900276	Not Available	668	Open in IMG/M
3300033489\|Ga0299912_11205158	Not Available	552	Open in IMG/M
3300033521\|Ga0316616_101360376	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	913	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	75.00%
Terrestrial	Environmental → Terrestrial	25.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	67.59%
Soil	Environmental → Terrestrial → Soil	25.00%
Marine	Environmental → Aquatic → Marine	7.41%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	39.81%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	19.44%
Sediment	Environmental → Aquatic → Freshwater → Sediment	13.89%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.41%
Wetlands	Environmental → Aquatic → Marine → Wetlands	7.41%
Lentic	Environmental → Aquatic → Freshwater → Lentic	6.48%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	5.56%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	39.81%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	19.44%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	13.89%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	7.41%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	6.48%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	5.56%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	5.56%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.85%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	39.81%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	18.52%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	7.41%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	7.41%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	6.48%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	5.56%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	5.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	5.56%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.85%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	0.93%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300002961	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk	Environmental	Open in IMG/M
3300004066	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLC_D2	Environmental	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300005205	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D2	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300009075	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009082	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009131	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1	Environmental	Open in IMG/M
3300009166	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300014260	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqA_D1_rd	Environmental	Open in IMG/M
3300027877	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027887	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk	Environmental	Open in IMG/M
3300027890	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027897	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI (SPAdes)	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300031873	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032143	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300032342	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300032401	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0	Environmental	Open in IMG/M
3300032516	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0	Environmental	Open in IMG/M
3300033408	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT	Environmental	Open in IMG/M
3300033413	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033434	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT_b	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033483	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_A	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300033489	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1072550602	3300001213	Wetland	MGVSLETEKRRSQCPVFSIRSRVRRTNDVRWRAEGFPGM
JGI11641J44799_100513593	3300002961	Wetland	MLKVEAMGSLSKLKNEEAIAVFSFRPRVRRAEGLPGMTTEGSHGHERRSAPPALVPL
JGI11641J44799_101113451	3300002961	Wetland	MLRVEVMGVSLKTEKRRSHCPVFSFRPRVRRAEGLPGMTT
Ga0055484_102127951	3300004066	Natural And Restored Wetlands	MLRVEGMGASLKTEKRRSHCPVFSFRQRVRRTNDVRWRAEGLPGMTTEDLHGHERRSAPPAWLPPICMVIPDHSSFSVLRE
Ga0069718_152335782	3300004481	Sediment	MLKVEVMGASLKTEKRRSHCPLFSFRPRLRRAEGLPGMTTED
Ga0068999_101243611	3300005205	Natural And Restored Wetlands	MLRVEVMGVSLKTEKRRSQCPVFSFRQRVRRAEGLPGMTTEDLHG
Ga0079037_1001602751	3300006224	Freshwater Wetlands	MLRVEGMGVSLKTEKRRSHWPVFSFRQRVRRAEGLPGMTTEDLHGNERRSAPPALLPLIC
Ga0079037_1003226513	3300006224	Freshwater Wetlands	MGVSLKTEKRRSQCPVFSFRPRVRRTNDVRWRAEGLPGMTTEDL
Ga0079037_1004856061	3300006224	Freshwater Wetlands	MGVSLKTEKRRSQQTSLVCHCPVFSFRPRVRRTNDVRWRA
Ga0079037_1008504681	3300006224	Freshwater Wetlands	MGVSLKTEKRRSQCPVFSFRQRVRRTNDVRWRAEGLPGMTTE
Ga0079037_1013085552	3300006224	Freshwater Wetlands	MLRVEVMRVSLKTEKRRSHCPVFSFRPRVRRAEGLPGMTTED
Ga0105090_104158951	3300009075	Freshwater Sediment	VVVEFLEMLRVEGMGVSLKTEKRRSQCPVFSFRQRSRRAEGLPGMTTEDLH
Ga0105106_101032191	3300009078	Freshwater Sediment	MLKVEVMGVSLKTDKRRSHCPVFSFRQRLRRAEGLPGMTTEDLH
Ga0105099_105365581	3300009082	Freshwater Sediment	MLRFEVMGVSLKTEKRRSHCPVFSFRPRVRRTNDVRWRAEGLPGMTTEDLH
Ga0105107_108025071	3300009087	Freshwater Sediment	MEVSLNTEQRRSHFPVFSFRQRLRRAEGLQGMTTEDLHGNVRRSAPPALLPLISIVIPDHSSFS
Ga0105107_108873052	3300009087	Freshwater Sediment	MLRVEVVGVPLETEKRRSQCPLFSIRQRVRRAEGLPGMTTEELHGYER
Ga0102851_107070002	3300009091	Freshwater Wetlands	MLKVEVMGVSLKIEKRRSHCPVFSFRPRVRRAEGLPGMTTE
Ga0102851_128997462	3300009091	Freshwater Wetlands	MRVSLKTEKRRSHCPLFSFRQRVRRTNDVRWRAEGLPGMTTEDLHGNERRSAPPVLLPLTCMVSSGRSSFSVLRE
Ga0115026_101181931	3300009111	Wetland	MLKVEVMGDSLKTEKRRSQCPMFSFRQRVRRAEGLPGMTTEDLHGDERR
Ga0115026_107549342	3300009111	Wetland	MLRIEVMGVSLKTEKRRSHCPVFSFRSRVRRAEGLPGMTTEDLPAHER
Ga0115027_101751431	3300009131	Wetland	MGVSLKTEKRRSHCPVFSFRLRVRRTNDVRWRAGGLLGMTTEDLHGYERRSA
Ga0105100_107577262	3300009166	Freshwater Sediment	MLEDEVMGVSLKTQKRRSQSPVFSFRQRLRRAEGLPGMTT
Ga0113563_108650401	3300009167	Freshwater Wetlands	MLRVEVMGVSLKTEKRRSQCPVFSFRQRLRRTNDVRWRAEGFPGMTTEDLHGNE
Ga0115028_106896821	3300009179	Wetland	MLRVEVMGVSLKTEKRRSQCPVFSFRQRVRRTNDVRWRAEGLPG
Ga0115028_109933622	3300009179	Wetland	MLDDEVMGVSLKTEKRRSQCPVFSLRQRVRRTNDVRWRA
Ga0115028_119411832	3300009179	Wetland	MGVSLKTEKRRSHWPVFRFRQWVRRAEGLPGMTTE
Ga0075307_11055051	3300014260	Natural And Restored Wetlands	MGVSLKTEKRRSHCPVFSFRQRVRRAEGFPGITTEDLHGNDRRSA
Ga0209293_100644143	3300027877	Wetland	MGVSLKTEKRRSQCPVFSFRQRVRRTNDVRWRAEGLPGMTTEDLHG
Ga0208980_101749861	3300027887	Wetland	MLKVDVMGVSLKTEKRRSQCPVFSFRPRVRRAEGLPGMTTE
Ga0208980_101833782	3300027887	Wetland	MLRVEVMGVSLKTEKRRGHCPVFSFRQRMRRAEGLPGMTTEDL
Ga0208980_103844743	3300027887	Wetland	MLRVEVVGVPLKTEKRRSQCPLFSIRQRVRRAEGLPGMTTEDLHGRERRSAPPA
Ga0209496_107778701	3300027890	Wetland	MGVSLKTEKRRSHWPVFRFRQWVRRAEGLPGMTTEDLHGYERRSAPPALPPLI
Ga0209254_105273342	3300027897	Freshwater Lake Sediment	MLKVEVMGVSLKTERRRSHRPVFSFRQWVRRAEGLPGMTTEELHGNERRSAPPALP
Ga0209254_108554952	3300027897	Freshwater Lake Sediment	MGVSLKTEKRRSHGPVFSFRPRVRRAEGLPGMTTEDLHGDE
Ga0209254_110957511	3300027897	Freshwater Lake Sediment	MAQVMGVSLKTEKRRSHCPVFGFRQMVRRAEGLPGMTTEDLHGYV
Ga0209253_100402991	3300027900	Freshwater Lake Sediment	MLKVDVTGISLKTEKRRSHCPVFSFRQPVRRAEGLSGMTTEDLHGHE
Ga0209253_102679811	3300027900	Freshwater Lake Sediment	MLKAEVMGVSLKTEKRRSHCPVFSIRQRVRRAEGLPGITTEHFHGHERRSAPPALLPPIYMVIP
Ga0209253_103062451	3300027900	Freshwater Lake Sediment	MLRAEVMWVSLKTEKRRSHCPVFSFRPRVRRAEGLPGMTT
Ga0209253_103652223	3300027900	Freshwater Lake Sediment	MLKVEVMGVSLKTEKRRSHCPVFSFRPRVRRAEGLPGMTT
Ga0315290_100562084	3300031834	Sediment	MLKVEVMWVSLKTEKRRSHCPVFSFRQPVRRAEGLPGMTTEELHGNERRSAPPALPPLIC
Ga0315290_102468281	3300031834	Sediment	MLRIEVMWVSLKIEKRRSQCPVFSFTPRVRRANDVPWRAEGHPGMTT
Ga0315290_106672571	3300031834	Sediment	MLRVEVMGVSLKTEKRRSQCPVFSFRPRVRRAEGLPGMTTEDLDGYERQ
Ga0315290_117309921	3300031834	Sediment	MLRVEVMWVSLKTEKRRSHCPVFSFRPRVRRAEGLPGMTTEDLHGYERRSAPPALLPLIC
Ga0315297_100423171	3300031873	Sediment	MLRVEVMGVSLKTEKRRSHCPVFSFRQRVRRAEGLP
Ga0315297_103802231	3300031873	Sediment	MLKVEVMGVSLKTDKRSSHCPVFSFRPRVRRAEGLPGMTTEDLHGNDRRSAPPALLPPI
Ga0315297_113290901	3300031873	Sediment	MLKVEVMGVSLKTERRRSHRPVFSFRQWVRRAEGLPGMTTEDLHGNERR
Ga0315297_114253001	3300031873	Sediment	MMKVEVMGVSLKTEKRRSHCPVFSFRQPVRRAEGLPGMTTEDLHGNERRSAPPAL
Ga0214473_107070832	3300031949	Soil	MLKVEVMGVSLKTEKRRSQQTSLVCHCPVFSFRQWVRRAEGLPGMTTEDLHDN
Ga0214473_110677643	3300031949	Soil	MLKVEVMGGSLKTEKRRSHLPVFSFRPRVRRAEGLPGMTTEDIHGNERR
Ga0315278_100342057	3300031997	Sediment	MGVSLKTEKRRSHCPVFSFRPRVRRAEGLPGMTTEDLHGDERRSAPPALLPLICMVS
Ga0315278_116469491	3300031997	Sediment	MPRVEVMGVSLKIDKRRSHCPVFSFRPRVRRAEGLPGTTT
Ga0315278_121341731	3300031997	Sediment	MLKVEVMGVSLKTERRRSHRPVFSFRQWVRRAEGLPGMTTEELHGNERRSAPPALPPLICMVIP
Ga0315292_107676662	3300032143	Sediment	MLKVEVMGVSLKTEKRRSHCPAFSSRLRVRRAEGLPGMTTED
Ga0315283_100822991	3300032164	Sediment	MVKVEVMGVSLKTEKRRSHCPVFSFRPRVRRAEGLPGMTTEDLHGNERRSAPPALLPLICMVSSG
Ga0315283_100960172	3300032164	Sediment	MGVSLKTEKRRSHCPVFSTRQRLRRAEGLPEMTTEDLHGYE
Ga0315283_104870142	3300032164	Sediment	MLKVEVMGVSLKTEERRSHCPVFSFRLSVRRAERLPGITTE
Ga0315276_114707102	3300032177	Sediment	MVRIEVMGVSLKTEKRRSHCPVFSFRPRVRRAEGLPGITTEDLHGHE
Ga0315286_101579691	3300032342	Sediment	MLRVEVMWVSLKTEKRRSHCPVFSFRPRVRRAEGLPGMTTED
Ga0315286_103081343	3300032342	Sediment	MVKVEVMGVSLKTEKRRSHCPVFSFRPRVRRAEGLPGMTTEDLHGNERQSAPPALLPL
Ga0315286_104354791	3300032342	Sediment	MWVSLKTEKRRSQQTSLVCHCPVFSFRPRVRRAEGLPGMTTEDLHGNERQSAPPALLPLTCMVIPDHSSFSVL
Ga0315286_106670761	3300032342	Sediment	MLKVEVMGVSLKTEKRRSQQTSLVCHCPVFSFRQR
Ga0315287_101420901	3300032397	Sediment	MEISLKTEKRRSHCPVLSFRPRVRRTNDVRWRAEGLPGMTTEDL
Ga0315287_102155831	3300032397	Sediment	MLKVEVMGVSLKTEKRRSRCLVFSVRQRVRRAEGLPGMTTEDLHGNDRRSAPPAV
Ga0315287_105877761	3300032397	Sediment	MLMPEVMGVSLKTEKRRSRYPVFSFRQRSRRAERLPGMTTEDLHGYQRRSAPPALLP
Ga0315287_106228031	3300032397	Sediment	MLKVEVMRVSLKTEKRRSHCPVFSFRPRVRRAEGL
Ga0315287_106894772	3300032397	Sediment	VITRKVMGVSLKTEKRRSHCPVFSFRPWVRRAEGLPGMTTEDL
Ga0315287_109410021	3300032397	Sediment	MLRIEVIGVSLKTEKRIIQCPGFSFTPRVRRAEGHPGK
Ga0315287_112368841	3300032397	Sediment	MLMVEVMGVSLKTDKRRSHCPVFSFRPRVRRAEGLPGMT
Ga0315287_113452361	3300032397	Sediment	MLRIEVMEVSLKTEKRRSHCPLFSFRPRVRRAEGLPGMTTEDLHGNERQSAPPALLPL
Ga0315287_113765782	3300032397	Sediment	MLRIEVMWVSLKIEKRRSQCPVFSFTPRVRRAEGLPG
Ga0315275_104171581	3300032401	Sediment	MVKVEVMGVSLKTEKRRSHCPVFSFRPRVRRAEGLPGMTTEDLHGNE
Ga0315275_106565882	3300032401	Sediment	MLMVEVMGVSLKTEKRRSHCPVFSFRQRVRRAEGLPGMTTEDSHGNERRSAP
Ga0315275_111708591	3300032401	Sediment	MLKVEAMGVSLKTEKRRSQQTLLVCHCPVFSFRPQVRRTNDVRWRA
Ga0315275_117291741	3300032401	Sediment	MLMVEVMWVSLKTEKRRSHCPVFSFRPRVRRAEGLPGMTT
Ga0315273_101922574	3300032516	Sediment	MRVSLKTEKRRSHCPVFSFRQRVRRAEGLPGMTTEDL
Ga0315273_103075321	3300032516	Sediment	MLRVEVMGVSLKTGKRRSHCPVFSFRQRVRRAEGLPGMTTE
Ga0315273_104989571	3300032516	Sediment	MLKVEVMGVSLKTDKRRSHCPVFSFRPRVRRAEGLPGMTTEDLHG
Ga0315273_106450611	3300032516	Sediment	MLKVEVVWVSLKTEKRRSQQTTLVCHCPVFSFRPRLRRAEGLPGMTTED
Ga0315273_107392213	3300032516	Sediment	MLKVEVMGVSLKTEKRRSQCPVFSFRPRVRRAEGLPGMTTEDL
Ga0315273_108789761	3300032516	Sediment	MLGVEVMRVSLKTEKRRSHCPVFSFRPRVRRAEGLPGMTTE
Ga0315273_112321931	3300032516	Sediment	MLRVEVMRVSLKTEKRRSHCPVFSFRPRVRRAEGLPGMTTEDLHGNE
Ga0315273_112347452	3300032516	Sediment	MLMVEVMGVSLKTEKRRSHCPVFSLRPRVRRAEGFPGMTTED
Ga0315273_115483801	3300032516	Sediment	MLKVEVMGDSLKTEKRRSHCPVFSFRQRVRRAEGLPGMTTE
Ga0315273_127523971	3300032516	Sediment	MLRVEVMGVSLKTEKRRSHCPAFSFRPRLRRAEGLPGMTTEGLHGDERRSAPPANGR
Ga0316605_113114501	3300033408	Soil	MRVEVMGVALKTEKRRSQCPVFSFRPRLRRAEGLPGMTTEGLHGNERRSAPPAL
Ga0316603_106476191	3300033413	Soil	MLRVEVMGVSLKTEKRRSQCPVFSFRQRLRRAEGLP
Ga0316603_109705312	3300033413	Soil	MGVSLKTEKRRSHCPLFSFRQRVRRTNDVRWRAEGLPGMTTEDLHGNERRSAPPALLPLTCMVSSGRSSFSVLRET
Ga0316619_115975842	3300033414	Soil	MLRVEVMGVSLKTEKRRSQCPVFSFRQRLRRAEGLPGMTTE
Ga0316622_1024577721	3300033416	Soil	MGVSPKTEKRRSQCPVFGFRQRVRRTNDVRWRAEGLPGMTT
Ga0316625_1006239031	3300033418	Soil	MGVSLKTEKRRSHCPVFSFRQRVRRTNNVRWRAERLPGMTTEDLHGHERRSAPPAWLPPIYMVIPDHSSFSV
Ga0316601_1025170441	3300033419	Soil	MLRIEVMRVSLKTEKRRSYCPVFSFRQRVRRAEGLPGMTTEALHGHERQSAPPAWLPPICMVI
Ga0316613_104425411	3300033434	Soil	MLKVEVMGVSLKIEKRRSHCPVFSFRPRVRRAEGLPGMTTEDLH
Ga0316613_107035371	3300033434	Soil	MGVSLKTEKRRSHWPVFRFRQWVRRAEGLPGMTTEDLHGYERRSAPPALP
Ga0316620_115086431	3300033480	Soil	LKCDAEVEVMGVSLKTEKRRSHCPVFSFRQRVRRAEGLPGMTTED
Ga0316620_118951032	3300033480	Soil	MLRIEVMGVSLKTEKRRSHCPVFSFRQRVRRAEGLPGMTTEDLHGLERRSAPPALLPLIC
Ga0316620_125232342	3300033480	Soil	MLRIEVMGVSLKTEERRSHCPVLSFRQRVRRAEGLPRMTTEDLHGNDRRSAPPALLPPFCMII
Ga0316627_1004799452	3300033482	Soil	MLGVEVMGVSLKTEKRRSQCPVFSFRQRVRRTNDVRWRAEGLPGMTTEDLHGNERRSAPP
Ga0316629_104711141	3300033483	Soil	MGVSLKTEKRRSHCPVFSFRPRVRRTNDVRWRAEGLPGMTTEGLHGHE
Ga0316626_101286804	3300033485	Soil	MWVSLKTEKRRSQQTSLVCHCPVFSFRPRVRRTNDVRWRAEGLPGMTTEDLHGDERRSAPPALLPLICMVIP
Ga0316626_105980632	3300033485	Soil	MLRVEGMGVSLKTEKRRSHWPVFSFRQRVRRAEGLPGMT
Ga0316624_108063482	3300033486	Soil	MLRIEVMGGSLKTEKRRSHCPVFSFKPRVRRAEGLPGMTTEDLDGYQ
Ga0316624_109701642	3300033486	Soil	MEVSPKTEKRRSHCPLFSFRQRVRRAEGLPGMTTEDLHGNERQSAPPALLPLVCMIIPDHSSFSVLRETP
Ga0316624_114973902	3300033486	Soil	MGVSLKTEKRRSHCPVFSFRQRVGRAEGLPGMTTEGLHS
Ga0299912_103976721	3300033489	Soil	MLRVEVMRVSLKTEKRRSHCPVFSFRPRVRRAERLPGMTTEDLHGNERRSAQ
Ga0299912_108523721	3300033489	Soil	MLKVEVMGVSLKTEKRRSQQTSLVCHCPVFSFRQWVRRAEGLPGMTTEDLHDNERRSAPPALLPLVCMVISDHSSF
Ga0299912_109002761	3300033489	Soil	MLRVEVMWVSLKTEKRRSHCPVFSFRQRVRRAEGLPGMTTEGLHGNERRSAPPALLPLFCMVTSG
Ga0299912_112051582	3300033489	Soil	MMRIEVMWVSLKTEKRRSHCPVFSFRPRVRRAEGLPGMTTEDLHGDERRSAPPALLPLIC
Ga0316616_1013603761	3300033521	Soil	MGVSLKTEKRRSQCPVYRFRSRLRRAEGLPGMTTEDLPGHERRSAPPAWLPPICMVIPDH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F090577

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences