Metagenome Family F090546

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090546
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	47 residues
Representative Sequence	RAYIRRARKKALADAKKLGEPPPQKPKGVVSTVKAIYPKKRRPK
Number of Associated Samples	91
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.93 %
% of genes near scaffold ends (potentially truncated)	97.22 %
% of genes from short scaffolds (< 2000 bps)	89.81 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (90.741 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (20.370 % of family members)
Environment Ontology (ENVO)	Unclassified (39.815 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (53.704 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.11% β-sheet: 0.00% Coil/Unstructured: 63.89%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF07676	PD40	50.00
PF01625	PMSR	10.19
PF02900	LigB	1.85
PF00326	Peptidase_S9	1.85
PF00550	PP-binding	0.93
PF06971	Put_DNA-bind_N	0.93
PF14158	YndJ	0.93
PF13432	TPR_16	0.93
PF09720	Unstab_antitox	0.93
PF08530	PepX_C	0.93
PF13946	DUF4214	0.93
PF05163	DinB	0.93
PF02661	Fic	0.93
PF07719	TPR_2	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0225	Peptide methionine sulfoxide reductase MsrA	Posttranslational modification, protein turnover, chaperones [O]	10.19
COG2318	Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.93
COG2936	Predicted acyl esterase	General function prediction only [R]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.74 %
Unclassified	root	N/A	9.26 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.74 %
Unclassified	root	N/A	9.26 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.74 %
Unclassified	root	N/A	9.26 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	64.81 %
Unclassified	root	N/A	9.26 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.78 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	59.26 %
Unclassified	root	N/A	9.26 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	1.85 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	59.26 %
Unclassified	root	N/A	9.26 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	0.93 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	0.93 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	59.26 %
Unclassified	root	N/A	9.26 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.93 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	0.93 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	59.26 %
Unclassified	root	N/A	9.26 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	0.93 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.93 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	59.26 %
Unclassified	root	N/A	9.26 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.93 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.93 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459010\|GIO7OMY02HNGJ0	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c2383029	All Organisms → cellular organisms → Bacteria → Proteobacteria	4530	Open in IMG/M
3300000574\|JGI1357J11328_10032002	All Organisms → cellular organisms → Bacteria	2337	Open in IMG/M
3300004782\|Ga0062382_10159609	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300004808\|Ga0062381_10247563	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300005180\|Ga0066685_10559780	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	788	Open in IMG/M
3300005328\|Ga0070676_11206460	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	575	Open in IMG/M
3300005338\|Ga0068868_101498346	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	631	Open in IMG/M
3300005345\|Ga0070692_10717866	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	674	Open in IMG/M
3300005437\|Ga0070710_10410859	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	909	Open in IMG/M
3300005437\|Ga0070710_11082998	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300005438\|Ga0070701_10855045	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	625	Open in IMG/M
3300005445\|Ga0070708_100095836	All Organisms → cellular organisms → Bacteria	2709	Open in IMG/M
3300005445\|Ga0070708_101895720	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300005446\|Ga0066686_10142548	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1579	Open in IMG/M
3300005468\|Ga0070707_100391801	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1349	Open in IMG/M
3300005518\|Ga0070699_100749358	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	893	Open in IMG/M
3300005518\|Ga0070699_102026734	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300005554\|Ga0066661_10377320	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	868	Open in IMG/M
3300005576\|Ga0066708_10923695	Not Available	544	Open in IMG/M
3300005586\|Ga0066691_10546304	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	691	Open in IMG/M
3300005618\|Ga0068864_101652978	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M
3300005841\|Ga0068863_101237990	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	753	Open in IMG/M
3300006034\|Ga0066656_11007144	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300006237\|Ga0097621_100340439	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1332	Open in IMG/M
3300006796\|Ga0066665_10307835	All Organisms → cellular organisms → Bacteria	1276	Open in IMG/M
3300006806\|Ga0079220_11192450	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	627	Open in IMG/M
3300006854\|Ga0075425_100457228	Not Available	1470	Open in IMG/M
3300006871\|Ga0075434_100226298	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1890	Open in IMG/M
3300006871\|Ga0075434_100610969	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1109	Open in IMG/M
3300006880\|Ga0075429_100167965	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1922	Open in IMG/M
3300007258\|Ga0099793_10555362	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300009038\|Ga0099829_11612233	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300009089\|Ga0099828_10506915	Not Available	1088	Open in IMG/M
3300009089\|Ga0099828_11788982	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300009094\|Ga0111539_10317668	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1813	Open in IMG/M
3300009143\|Ga0099792_10911827	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	582	Open in IMG/M
3300009177\|Ga0105248_10208482	All Organisms → cellular organisms → Bacteria	2202	Open in IMG/M
3300010047\|Ga0126382_11035900	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	722	Open in IMG/M
3300010047\|Ga0126382_11181365	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	684	Open in IMG/M
3300010337\|Ga0134062_10139995	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1068	Open in IMG/M
3300010397\|Ga0134124_10187947	All Organisms → cellular organisms → Bacteria → Proteobacteria	1867	Open in IMG/M
3300010397\|Ga0134124_11415397	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	721	Open in IMG/M
3300010397\|Ga0134124_11753182	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	654	Open in IMG/M
3300010397\|Ga0134124_11804414	All Organisms → cellular organisms → Bacteria → Acidobacteria	646	Open in IMG/M
3300010399\|Ga0134127_11407956	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300010399\|Ga0134127_13286115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	529	Open in IMG/M
3300010400\|Ga0134122_12537173	Not Available	562	Open in IMG/M
3300010403\|Ga0134123_12845237	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	552	Open in IMG/M
3300011271\|Ga0137393_10885295	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	762	Open in IMG/M
3300011433\|Ga0137443_1161702	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300012189\|Ga0137388_10773312	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	891	Open in IMG/M
3300012199\|Ga0137383_11101756	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	575	Open in IMG/M
3300012202\|Ga0137363_11529206	Not Available	559	Open in IMG/M
3300012204\|Ga0137374_10408329	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1077	Open in IMG/M
3300012208\|Ga0137376_10770712	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	829	Open in IMG/M
3300012349\|Ga0137387_10054250	All Organisms → cellular organisms → Bacteria	2683	Open in IMG/M
3300012349\|Ga0137387_11041133	All Organisms → cellular organisms → Bacteria → Acidobacteria	585	Open in IMG/M
3300012582\|Ga0137358_10633675	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	716	Open in IMG/M
3300012685\|Ga0137397_10098355	All Organisms → cellular organisms → Bacteria	2143	Open in IMG/M
3300012685\|Ga0137397_10165951	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1638	Open in IMG/M
3300012918\|Ga0137396_10831058	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	679	Open in IMG/M
3300012925\|Ga0137419_10371452	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1111	Open in IMG/M
3300012925\|Ga0137419_11873276	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300012930\|Ga0137407_10186706	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1853	Open in IMG/M
3300012961\|Ga0164302_11615446	Not Available	540	Open in IMG/M
3300012961\|Ga0164302_11716029	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300012975\|Ga0134110_10527599	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300013297\|Ga0157378_10405390	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1344	Open in IMG/M
3300013297\|Ga0157378_12002961	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	629	Open in IMG/M
3300013306\|Ga0163162_12299115	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	619	Open in IMG/M
3300013306\|Ga0163162_12428884	All Organisms → cellular organisms → Bacteria → Acidobacteria	603	Open in IMG/M
3300013308\|Ga0157375_11767972	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	733	Open in IMG/M
3300014829\|Ga0120104_1002620	All Organisms → cellular organisms → Bacteria	3251	Open in IMG/M
3300015197\|Ga0167638_1071840	Not Available	711	Open in IMG/M
3300015254\|Ga0180089_1005376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2115	Open in IMG/M
3300015373\|Ga0132257_100284740	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1982	Open in IMG/M
3300016319\|Ga0182033_11872248	Not Available	545	Open in IMG/M
3300018051\|Ga0184620_10281315	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300018468\|Ga0066662_10079433	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2236	Open in IMG/M
3300018469\|Ga0190270_12553355	Not Available	573	Open in IMG/M
3300018482\|Ga0066669_12235589	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
3300018920\|Ga0190273_12351487	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	506	Open in IMG/M
3300019458\|Ga0187892_10195919	All Organisms → cellular organisms → Bacteria	1084	Open in IMG/M
3300021073\|Ga0210378_10188324	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300024290\|Ga0247667_1034892	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	954	Open in IMG/M
3300025898\|Ga0207692_10511655	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	763	Open in IMG/M
3300025907\|Ga0207645_10938593	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	587	Open in IMG/M
3300025942\|Ga0207689_10852947	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300025942\|Ga0207689_11430824	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	579	Open in IMG/M
3300026023\|Ga0207677_10093364	All Organisms → cellular organisms → Bacteria	2194	Open in IMG/M
3300026035\|Ga0207703_10308692	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1445	Open in IMG/M
3300026089\|Ga0207648_11634875	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	605	Open in IMG/M
3300026095\|Ga0207676_10334160	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1396	Open in IMG/M
3300026309\|Ga0209055_1222764	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300026326\|Ga0209801_1241365	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	694	Open in IMG/M
3300026332\|Ga0209803_1326887	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300026527\|Ga0209059_1276306	All Organisms → cellular organisms → Bacteria → Acidobacteria	566	Open in IMG/M
3300026538\|Ga0209056_10553319	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	585	Open in IMG/M
3300027778\|Ga0209464_10244664	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300027875\|Ga0209283_10751612	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	604	Open in IMG/M
3300027882\|Ga0209590_10645053	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	680	Open in IMG/M
3300031231\|Ga0170824_104527602	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300031720\|Ga0307469_10084799	All Organisms → cellular organisms → Bacteria	2161	Open in IMG/M
3300031740\|Ga0307468_100330066	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1126	Open in IMG/M
3300032180\|Ga0307471_103352888	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300032211\|Ga0310896_10093450	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1330	Open in IMG/M
3300034165\|Ga0364942_0109194	Not Available	896	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.78%
Host-Associated	Host-Associated	22.22%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.37%
Plants	Host-Associated → Plants	22.22%
Aquatic	Environmental → Aquatic	7.41%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	68.52%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.11%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.19%
Freshwater	Environmental → Aquatic → Freshwater	4.63%
Sediment	Environmental → Aquatic → Sediment	2.78%
Cave	Environmental → Terrestrial → Cave	0.93%
Floodplain	Environmental → Terrestrial → Floodplain	0.93%
Roots	Host-Associated → Plants → Roots	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.26%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.19%
Loam	Environmental → Terrestrial → Soil → Loam	9.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.33%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.78%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.78%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.85%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.93%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.93%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.93%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.11%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	14.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.19%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.56%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.78%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.93%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.93%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.93%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.93%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	20.37%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	12.04%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.26%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	7.41%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.63%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.70%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	2.78%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.78%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.85%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.93%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.93%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.93%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.93%
Bio-Ooze	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze	0.93%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000574	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m	Environmental	Open in IMG/M
3300004782	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh	Environmental	Open in IMG/M
3300004808	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300011433	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT300_2	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014829	Permafrost microbial communities from Nunavut, Canada - A10_35cm_6M	Environmental	Open in IMG/M
3300015197	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6B, Proglacial plain, adjacent to northern proglacial tributary)	Environmental	Open in IMG/M
3300015254	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT860_16_10D	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019458	Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300024290	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK08	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300034165	Sediment microbial communities from East River floodplain, Colorado, United States - 19_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_08133680	2170459010	Grass Soil	RKKSLAEAKKLGEPAKPKPQGVVSTVKAIYPKKRRPK
ICChiseqgaiiDRAFT_23830291	3300000033	Soil	IKTPSDLERSEVRAYMRRAHQLAVDDARKLGETASKVQGVVSTVKAIYPRKRRPGPESRK
JGI1357J11328_100320021	3300000574	Groundwater	RAYIRRARKKALADAKKLGEPPPQKPKGVVSTVKAIYPKKRRPK*
Ga0062382_101596091	3300004782	Wetland Sediment	EVRSYIRRARKVALADARKLGETTPLLKGVVSKVKAIYPKKRRPAPKDKR*
Ga0062381_102475632	3300004808	Wetland Sediment	VRSYIRRARKVALADARKLGETTPLLKGVVSKVKAIYPKKRRPAPKDKR*
Ga0066685_105597801	3300005180	Soil	EIRSYIRRARKKAIADAWKTDGPPPREPDGVVSKVKAVYPKKRRPK*
Ga0070676_112064602	3300005328	Miscanthus Rhizosphere	KSESDLARPEIRAYIRRAKKKALADARKLGEKPPKKPVGVVSTVKAIYAKKRRP*
Ga0068868_1014983462	3300005338	Miscanthus Rhizosphere	PEIRAYIRRAKKNALAEARKLGEKPPKKPAGVISTVKAIYAKKRRP*
Ga0070692_107178661	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	TIKSESDLARPEIRAYIRRAKKKALADARKLGEKPPKKPVGVVSTVKAIYAKKRRP*
Ga0070710_104108592	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	AEDLKRPELRAYIRRAKKKAIADARKLGWAAAQNPKGVISTVKAIYKKKRRPK*
Ga0070710_110829981	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	RAYIRRAKKKARAEARKLGEKPPPKPADVISTVKAIYAKKRRP*
Ga0070701_108550451	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	PEIRAYIRRAKKSALAEARKLGEKPPQEPAGVISTVKAIYAKKRRP*
Ga0070708_1000958361	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	IRRARKVALAEAKKLGGAPPKKPNGVVSTVKAIYPNKRRPS*
Ga0070708_1018957202	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	AYIRRARKVALAEAKKLGGAPPKKPNGVVSTVKAIYPNKRRPVKK*
Ga0066686_101425482	3300005446	Soil	EQPELRAYIRRARKKAVADARKLGEALPKKPEGVVSTVKAVYPKKRRPKAKT*
Ga0070707_1003918011	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	RRARKKALSDARKLGESAPLKPDRVISTVKAVYAKKRRPK*
Ga0070699_1007493582	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	PEIRAYIRRARKQALADARKLEKTPAKKPAGVISTVKAIYPKKRRPK*
Ga0070699_1020267342	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	IKSSEDLARPEIRAYIRRARKKALDDARKLGEAAPRKPKGVVSTIKAIYPKKRRPK*
Ga0066661_103773201	3300005554	Soil	RARKKALDDARRLGEPAPKKPEGVVSIVKAIYPKKRRPNRT*
Ga0066708_109236951	3300005576	Soil	RVEDIKRPELRAYIRRAKRKAFADARKLGEPLSKQPAGVVSTVKAIYAKKRRPK*
Ga0066691_105463042	3300005586	Soil	KRPEVRSYIRRARKKAIVEARKIGEPARQKPDRVISTVKAIYPKKRRPK*
Ga0068864_1016529782	3300005618	Switchgrass Rhizosphere	PEIRAYIRRAKKKALAEARKLGEPMPKKPDGVVSTVKAIYARKRRP*
Ga0068863_1012379902	3300005841	Switchgrass Rhizosphere	DDLKRPEVRSYIRRARKKALADARKLGEPAPAKPKGVVSTVKAIYPKKRRPK*
Ga0066656_110071442	3300006034	Soil	PELRAYIRRARKKAVADARKLGEAAPKKPEGVVSTVKAIYPKKRRPKAKT*
Ga0097621_1003404392	3300006237	Miscanthus Rhizosphere	DLKRPEVRAYIRRARKKAIADARKLGEPALAKPKGVVSTVKAIYEKKRRPK*
Ga0066665_103078353	3300006796	Soil	RAYIRRARKKALSDARKLGEPAPPKPAGVISTVKAVYPKKRRPKGQT*
Ga0079220_111924502	3300006806	Agricultural Soil	RSYIRRARKRALAEARKLGERHQAPDGVVSTVKAIYPKKRRPR*
Ga0075425_1004572281	3300006854	Populus Rhizosphere	ELRTYIRRARKKALVEARKLGEPPAPEPDGVVSTVKAIYARKRRPSKA*
Ga0075434_1002262981	3300006871	Populus Rhizosphere	PELRAYIRRARKKALAEARKLGEAPKPKPNGVVSTVKAIYPKKRRPK*
Ga0075434_1006109692	3300006871	Populus Rhizosphere	TAEELQRPEIRSYIRRARKQALADAKKLGEKRQPKPAGVVSTVKAIYPRKRRPK*
Ga0075429_1001679652	3300006880	Populus Rhizosphere	SYIRRARKKALTEARKLGEPAPAKPKGVVSTVKAIYPKKRRPK*
Ga0099793_105553621	3300007258	Vadose Zone Soil	DLARPEIRAYIRRALKHARSDARKLGEVMPKKPKGVVSTVKAIYPKKRRPVPAR*
Ga0099829_116122331	3300009038	Vadose Zone Soil	KALADARKLGEPAPKKPDGVVSTVKAIYPKKRRPVK*
Ga0099828_105069151	3300009089	Vadose Zone Soil	LARPEIRSYIRRARKKAVAEARKLGEAPTKKPKGVVSNVKAIYAKKRRPAKK*
Ga0099828_117889822	3300009089	Vadose Zone Soil	DLKRPEIRSYLRRARKVALAESRKLGEAPAKKPKGVVSTVKAIYPKKRRPK*
Ga0111539_103176681	3300009094	Populus Rhizosphere	KKALTEARKLGEPAPAKPKGVVSTVKAIYPKKRRPK*
Ga0099792_109118271	3300009143	Vadose Zone Soil	ELRAYIRRAKKKAFADARKLGEPLSKQPAGVVSTVKAIYAKKRRPK*
Ga0105248_102084821	3300009177	Switchgrass Rhizosphere	PEIRAYIRRAKKKALAEARKLGERPPQKPAGVISTVKAIYAKKRRPAATLKK*
Ga0126382_110359002	3300010047	Tropical Forest Soil	RSYIRRARKKALADAKKLGEKTKKPDRVVSTVKAIYPKKRRPK*
Ga0126382_111813651	3300010047	Tropical Forest Soil	YIKRARKKALADARKLGETPPRKPDGVVSTVKAIYATKRRPKSRPEVGK*
Ga0134062_101399952	3300010337	Grasslands Soil	RKKAVADARKLGEALPKKPEGVVSTVKAVYPKKRRPKAKT*
Ga0134124_101879473	3300010397	Terrestrial Soil	SDLERSEVRAYMRRAHQLAVDDARKSGETASKVQGVVSTVKAIYPRKRRPGLVSRK*
Ga0134124_114153972	3300010397	Terrestrial Soil	RRARKKALAEARKLGERYQPPDGVVSTVKAIYPKKRRPT*
Ga0134124_117531821	3300010397	Terrestrial Soil	KTIEDIKRPVIRSYIRRARKKAIADARRFCAPVLPKADGVVSTVKAVYAKKRRPA*
Ga0134124_118044141	3300010397	Terrestrial Soil	RPELRSYIRRARKQALAEARKLGETQPKPKGVISTVKAIYPKKRRPK*
Ga0134127_114079563	3300010399	Terrestrial Soil	ALADARKLGGPRSQPPDGVISTVKKIYAKKRRPK*
Ga0134127_132861151	3300010399	Terrestrial Soil	IRRAKRRASADARKLGEAAKKTKGVISTVKAVYPKKRRPR*
Ga0134122_125371731	3300010400	Terrestrial Soil	ERPELRTYIRRARQVAIDDARKLGETAPPVEGLISTVKAIYPKKRRPIPASLK*
Ga0134123_128452371	3300010403	Terrestrial Soil	KKALADARKLGEPAPAKPKGVVSTVKAIYPKKRRPK*
Ga0137393_108852951	3300011271	Vadose Zone Soil	ADIKRPEIRAYIRRARKKALADARKLGEPAPPEPDGVISTVKAIYPKKRRPK*
Ga0137443_11617022	3300011433	Soil	RGYVRRARQVAIDDARKLGETAPTVAGVISTVKAIYARKRRPVPSRGSDR*
Ga0137388_107733122	3300012189	Vadose Zone Soil	KRARKFALAEAKKLGEPPPQKPEGVVSTVKAIYPKKRRPK*
Ga0137383_111017562	3300012199	Vadose Zone Soil	YIQRARKVALAESKKLGDAPPKKPKGVVSTVKAIYAKKRRPK*
Ga0137363_115292061	3300012202	Vadose Zone Soil	RAREGAIADARKLGEVMPPRAKGVVSVVKAIYPKKRRPGANSKK*
Ga0137374_104083292	3300012204	Vadose Zone Soil	AADVERPEIRAYIRRARKKALADARKLGEPAPAKRAGLISTVKAIYPKKRRPK*
Ga0137376_107707122	3300012208	Vadose Zone Soil	PEIRSYIRRARKKAIADARKLGEPAPQKPAGVVSTVKAIYPKKRRPK*
Ga0137387_100542501	3300012349	Vadose Zone Soil	DLRRPEIRGYIKRARKVALAEAKKLGDTPPKKPKGVVSTVKAIYAKKRRPK*
Ga0137387_110411331	3300012349	Vadose Zone Soil	DLRRPEIRGYIKRARKVALAEAKKLGDAQPKKPKGVVSTVKAIYLKKRRPKK*
Ga0137358_106336751	3300012582	Vadose Zone Soil	DLNRPELRTYIRRARRQALKDARRLGAPAKTKPKGVVSTVKAIYPKKRRPK*
Ga0137397_100983552	3300012685	Vadose Zone Soil	EDIKRAEIRAYIRRARAKALADARKLGEPPPQKPAGVVSTVKAIYAKKRRPR*
Ga0137397_101659512	3300012685	Vadose Zone Soil	RKKALADARKLGEPAPKKPAGVVSAVKAIYPKKRRPKSYPG*
Ga0137396_108310582	3300012918	Vadose Zone Soil	RKKAMADARKLGEPPPKKPKGVVSTVKAIYPKKRRPKTKT*
Ga0137419_103714522	3300012925	Vadose Zone Soil	AYIRRARAKALADARKLGEPPPQKPAGVVSTVKAIYAKKRRPK*
Ga0137419_118732761	3300012925	Vadose Zone Soil	RPEIRAYIRRARKKAVAEAKKLGGAPTTKPKGVVSTVKAIYPKKRRPK*
Ga0137407_101867063	3300012930	Vadose Zone Soil	IRRAKKKAFADARKLGEPLTKEPGGVVSTVKAIYAKKRRPK*
Ga0164302_116154462	3300012961	Soil	RRAKKNALAETRKLGEKPPQKPAGVISTVKAIYAKKRRP*
Ga0164302_117160291	3300012961	Soil	IKIRTPADLVRPEIRAYVRRARQVAIDDARKLGETVSKVEGVVSTVKAIYPKKRRPVPNP
Ga0134110_105275992	3300012975	Grasslands Soil	LFRPEIRAYIQRARKVALAESKKLGDAPPKKPKGVVSTVKAIYAKKRRPK*
Ga0157378_104053902	3300013297	Miscanthus Rhizosphere	ELRAYIRRARKQAVADAKKMGEPTPVKPKGVVSTVKAIYPKKRRPAGSG*
Ga0157378_120029611	3300013297	Miscanthus Rhizosphere	MRADIRRAKKNALAEARKLGEKPPKKPAGVISTVKAIYAKKRRP*
Ga0163162_122991151	3300013306	Switchgrass Rhizosphere	PEIRAYIRRAKKKALAEARKLGEPASPKRVGVVSTVKAVYAKKRRPGATLKK*
Ga0163162_124288841	3300013306	Switchgrass Rhizosphere	RKQAIADAKKMGEPTPVKPKGVVSTVKAIYPKKRRPAGSG*
Ga0157375_117679721	3300013308	Miscanthus Rhizosphere	AKKKALADARRLGEAPTKKPAGVVSTVKAIYAKKRRP*
Ga0120104_10026204	3300014829	Permafrost	TITGVEDIKRPELRTYIRRAKKKAFADARKLGEPLPKQADGVVSTVKAIYAKKRRPT*
Ga0167638_10718401	3300015197	Glacier Forefield Soil	AADIKRPELRSYIRRARKKALADARMLGEPTLQKPAGVVSTVKAIYKKKRRPA*
Ga0180089_10053761	3300015254	Soil	RRARQVAIDDARKLGETAPTVAGVISTVKAIYARKRRPVPSRGSDR*
Ga0132257_1002847401	3300015373	Arabidopsis Rhizosphere	KPEDLKRPELRAYIRRARKKALTEARRLGERPVAPTDVVSTVKAIYPKKRRPN*
Ga0182033_118722481	3300016319	Soil	HIRFKTETDLTRPDVRAYIRRAKKQALAETRKLGEPPPKKPAGVISTVKAIYAKKRRP
Ga0184620_102813151	3300018051	Groundwater Sediment	RARKVAIDEARKLGETAPPVKGVISTVKAIYPKKRRPSPK
Ga0066662_100794333	3300018468	Grasslands Soil	MKASEDLERPELRAYIRRARKKALSDARKLGEPAPEKPEGVVSTVKAIYPKKRRPK
Ga0190270_125533551	3300018469	Soil	RKAALADARKLGGPKSPKPEGVISTVKAIYPKNRRPK
Ga0066669_122355892	3300018482	Grasslands Soil	PDDLKRREIRSYIRRARKKAIADARKLGEPLLRKPDGVVSTVKAVYPKKRRPKLVKRQR
Ga0190273_123514871	3300018920	Soil	RPEIRAYLRRAHQSAIDDARKLGDGRAKSMKGVVSTVKAIYPKKRRPNLNS
Ga0187892_101959191	3300019458	Bio-Ooze	RKAALRDAGKLGEPTKKPKGVVSTVKAIYPKKRRPKKVK
Ga0210378_101883242	3300021073	Groundwater Sediment	RRARKRATDDARKLGEPAPKTLNGVVSTVKAIYPKKRRPR
Ga0247667_10348922	3300024290	Soil	ADLERPVLRSYIRRAQKTALADMKMLGETPPPKPDGVISTVKAIYPRKRRPK
Ga0207692_105116551	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	AEDLKRPELRAYIRRAKKKAIADARKLGWAAAQNPKGVISTVKAIYKKKRRPK
Ga0207645_109385932	3300025907	Miscanthus Rhizosphere	KSESDLARPEIRAYIRRAKKKALADARKLGEKPPKKPVGVVSTVKAIYAKKRRP
Ga0207689_108529472	3300025942	Miscanthus Rhizosphere	LERPEVRAYVRRARRLAIDDARKLGETASKVKGVVSTVKAIYPKKRRPIVDGKVRKSD
Ga0207689_114308241	3300025942	Miscanthus Rhizosphere	VDLKRPELRSYIRRARKAALADARKLGGPKSPKPDGVISTVKAIYPKKRRPK
Ga0207677_100933642	3300026023	Miscanthus Rhizosphere	AYIRRAKKNALAEARKLGEKPPKKPAGVISTVKAIYAKKRRP
Ga0207703_103086921	3300026035	Switchgrass Rhizosphere	IRRARKKALADARKLGEPAPAKPKGVVSTVKAIYPKKRRPK
Ga0207648_116348751	3300026089	Miscanthus Rhizosphere	RAYIRRARKKALAEARKLGEAPKQKPNGVVSTVKAIYPKKRRPK
Ga0207676_103341602	3300026095	Switchgrass Rhizosphere	AYIRRAKKKAVAEARKLGEQPPRKPAGVVSTVKAIYPKKRRPK
Ga0209055_12227642	3300026309	Soil	RARKKALDDARRLGEPAPKKPEGVVSIVKAIYPKKRRPNRT
Ga0209801_12413651	3300026326	Soil	IARPELRAYIRHARKKALADAKKLGEAAPDKPDGVISTVKAIYPKKRRPIKK
Ga0209803_13268871	3300026332	Soil	AYIRRARKKALADARKLGEALPKKPEGVVSTVKAVYPKKRRPKAKT
Ga0209059_12763061	3300026527	Soil	RARKKALSDARKLGEPPPEKPEGVVSTVKAIYPKKRRPKTKT
Ga0209056_105533192	3300026538	Soil	ALSDARKLGEPAPEKPEGVVSTVKAIYPKKRRPKTKT
Ga0209464_102446642	3300027778	Wetland Sediment	VRSYIRRARKVALADARKLGETTPLLKGVVSKVKAIYPKKRRPAPKDKR
Ga0209283_107516122	3300027875	Vadose Zone Soil	RKKAVAEARKLGEAPTKKPKGVVSNVKAIYAKKRRPAKK
Ga0209590_106450532	3300027882	Vadose Zone Soil	LRAYIRRARKKALADARKLGEPAPKKPEGVVSTVKAIYPKKRRPKAKT
Ga0170824_1045276022	3300031231	Forest Soil	REIRAYIRRAKKKALADARKLGERPPKKPTGVVSTVKAIYAKKRRP
Ga0307469_100847991	3300031720	Hardwood Forest Soil	APEDLERRQIRSYIARARKKAFADARKLGEQLPPKPDDVVSTVKAIYPKKRRPKLVKKRQ
Ga0307468_1003300662	3300031740	Hardwood Forest Soil	KKALADARKLGEPTAEKPAGVISTVKAIYPKKRRPK
Ga0307471_1033528882	3300032180	Hardwood Forest Soil	CIRRARKKALADARKLGEPAPKKPENVVSTVKAIYPKKRRPK
Ga0310896_100934501	3300032211	Soil	RRARKKALADARKLGEPAPAMPKGVVSTVKAIYPKKRRPK
Ga0364942_0109194_740_895	3300034165	Sediment	RLEIRSYVRRARKVAIDDARKLGETRPKNIAGVVSTVKAIYPKRCRPISKS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F090546

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences