Metagenome Family F090473

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090473
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	41 residues
Representative Sequence	MELSRPPLVVAFELSEKRKAIVADALAGASAVVYLTELDE
Number of Associated Samples	89
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	57.41 %
% of genes near scaffold ends (potentially truncated)	93.52 %
% of genes from short scaffolds (< 2000 bps)	92.59 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (67.593 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (31.482 % of family members)
Environment Ontology (ENVO)	Unclassified (42.593 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.926 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.59% β-sheet: 0.00% Coil/Unstructured: 79.41%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF09335	SNARE_assoc	2.78
PF02239	Cytochrom_D1	1.85
PF02826	2-Hacid_dh_C	1.85
PF00005	ABC_tran	1.85
PF00528	BPD_transp_1	1.85
PF00171	Aldedh	1.85
PF02129	Peptidase_S15	0.93
PF01425	Amidase	0.93
PF00589	Phage_integrase	0.93
PF00580	UvrD-helicase	0.93
PF01135	PCMT	0.93
PF00239	Resolvase	0.93
PF13416	SBP_bac_8	0.93
PF14534	DUF4440	0.93
PF04073	tRNA_edit	0.93
PF03006	HlyIII	0.93
PF08530	PepX_C	0.93
PF00211	Guanylate_cyc	0.93
PF01609	DDE_Tnp_1	0.93
PF07007	LprI	0.93
PF00486	Trans_reg_C	0.93
PF03601	Cons_hypoth698	0.93
PF00903	Glyoxalase	0.93
PF04430	DUF498	0.93
PF01329	Pterin_4a	0.93
PF01436	NHL	0.93
PF04392	ABC_sub_bind	0.93
PF03401	TctC	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	2.78
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	2.78
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	2.78
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	1.85
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	1.85
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	1.85
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	0.93
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.93
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.93
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.93
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.93
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.93
COG3737	Uncharacterized protein, contains Mth938-like domain	Function unknown [S]	0.93
COG3755	Uncharacterized conserved protein YecT, DUF1311 family	Function unknown [S]	0.93
COG3973	DNA helicase IV	Replication, recombination and repair [L]	0.93
COG2519	tRNA A58 N-methylase Trm61	Translation, ribosomal structure and biogenesis [J]	0.93
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.93
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.93
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.93
COG2936	Predicted acyl esterase	General function prediction only [R]	0.93
COG2855	Uncharacterized membrane protein YadS, UPF0324 family	Function unknown [S]	0.93
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.93
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.93
COG2154	Pterin-4a-carbinolamine dehydratase	Coenzyme transport and metabolism [H]	0.93
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.93
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.93
COG1504	Uncharacterized conserved protein, DUF498 domain	Function unknown [S]	0.93
COG1272	Predicted membrane channel-forming protein YqfA, hemolysin III family	Intracellular trafficking, secretion, and vesicular transport [U]	0.93
COG1074	3Ã¢â‚¬â„¢-5Ã¢â‚¬â„¢ helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	Replication, recombination and repair [L]	0.93
COG0210	Superfamily I DNA or RNA helicase	Replication, recombination and repair [L]	0.93
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	67.59 %
Unclassified	root	N/A	32.41 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	67.59 %
Unclassified	root	N/A	32.41 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	67.59 %
Unclassified	root	N/A	32.41 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	53.70 %
Unclassified	root	N/A	32.41 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	45.37 %
Unclassified	root	N/A	32.41 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.41 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	30.56 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7.41 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	30.56 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.63 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.85 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	30.56 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.63 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.93 %
Herbaspirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Herbaspirillum	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	30.56 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.93 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.93 %
unclassified Herbaspirillum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Herbaspirillum → unclassified Herbaspirillum	0.93 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	30.56 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.93 %
Herbaspirillum sp. BH-1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Herbaspirillum → unclassified Herbaspirillum → Herbaspirillum sp. BH-1	0.93 %
Bradyrhizobium sp. CCGB20	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGB20	0.93 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005947\|Ga0066794_10258380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	522	Open in IMG/M
3300005980\|Ga0066798_10127647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	722	Open in IMG/M
3300006354\|Ga0075021_10523515	All Organisms → cellular organisms → Bacteria → Proteobacteria	752	Open in IMG/M
3300006854\|Ga0075425_101991166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	650	Open in IMG/M
3300009038\|Ga0099829_10332489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1249	Open in IMG/M
3300009089\|Ga0099828_11948353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	515	Open in IMG/M
3300009522\|Ga0116218_1257957	Not Available	783	Open in IMG/M
3300009632\|Ga0116102_1186616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	560	Open in IMG/M
3300009698\|Ga0116216_10436887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	793	Open in IMG/M
3300009760\|Ga0116131_1079955	All Organisms → cellular organisms → Bacteria → Proteobacteria	1003	Open in IMG/M
3300009792\|Ga0126374_10637604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	792	Open in IMG/M
3300010047\|Ga0126382_11290371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	659	Open in IMG/M
3300010048\|Ga0126373_12953815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	530	Open in IMG/M
3300010358\|Ga0126370_11549164	Not Available	632	Open in IMG/M
3300010360\|Ga0126372_10347813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1328	Open in IMG/M
3300010360\|Ga0126372_11042967	All Organisms → cellular organisms → Bacteria → Proteobacteria	832	Open in IMG/M
3300010361\|Ga0126378_11328117	Not Available	813	Open in IMG/M
3300010366\|Ga0126379_12649196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	599	Open in IMG/M
3300010366\|Ga0126379_12868756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	577	Open in IMG/M
3300010376\|Ga0126381_103175049	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300010379\|Ga0136449_102510746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	739	Open in IMG/M
3300010379\|Ga0136449_102995793	Not Available	660	Open in IMG/M
3300010398\|Ga0126383_13284524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	528	Open in IMG/M
3300012202\|Ga0137363_10090138	Not Available	2307	Open in IMG/M
3300012205\|Ga0137362_10335175	Not Available	1310	Open in IMG/M
3300012207\|Ga0137381_11030901	Not Available	709	Open in IMG/M
3300012209\|Ga0137379_11217850	Not Available	660	Open in IMG/M
3300012210\|Ga0137378_10126045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2365	Open in IMG/M
3300012210\|Ga0137378_10474540	Not Available	1157	Open in IMG/M
3300012361\|Ga0137360_11480531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	583	Open in IMG/M
3300012951\|Ga0164300_10921635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	554	Open in IMG/M
3300012971\|Ga0126369_11272715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	825	Open in IMG/M
3300012971\|Ga0126369_11750626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	710	Open in IMG/M
3300012971\|Ga0126369_11760215	All Organisms → cellular organisms → Bacteria → Proteobacteria	709	Open in IMG/M
3300012984\|Ga0164309_11413181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	594	Open in IMG/M
3300014054\|Ga0120135_1092039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	533	Open in IMG/M
3300014200\|Ga0181526_10202475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGB20	1270	Open in IMG/M
3300014638\|Ga0181536_10117992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1462	Open in IMG/M
3300016319\|Ga0182033_10230240	All Organisms → cellular organisms → Bacteria	1494	Open in IMG/M
3300016341\|Ga0182035_11320366	Not Available	646	Open in IMG/M
3300016371\|Ga0182034_11356707	Not Available	621	Open in IMG/M
3300016371\|Ga0182034_12072120	Not Available	502	Open in IMG/M
3300016387\|Ga0182040_10244895	All Organisms → cellular organisms → Bacteria	1344	Open in IMG/M
3300016404\|Ga0182037_10988594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	733	Open in IMG/M
3300016445\|Ga0182038_11242306	Not Available	665	Open in IMG/M
3300017940\|Ga0187853_10402310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	606	Open in IMG/M
3300017961\|Ga0187778_11238415	Not Available	524	Open in IMG/M
3300017994\|Ga0187822_10327823	Not Available	547	Open in IMG/M
3300018008\|Ga0187888_1022433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	3283	Open in IMG/M
3300021168\|Ga0210406_10279474	Not Available	1363	Open in IMG/M
3300021181\|Ga0210388_10805264	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300021407\|Ga0210383_10364646	All Organisms → cellular organisms → Bacteria	1246	Open in IMG/M
3300021479\|Ga0210410_11377389	Not Available	598	Open in IMG/M
3300021560\|Ga0126371_13892830	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300025439\|Ga0208323_1021676	All Organisms → cellular organisms → Bacteria → Proteobacteria	1377	Open in IMG/M
3300025457\|Ga0208850_1038427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	811	Open in IMG/M
3300025457\|Ga0208850_1054311	Not Available	662	Open in IMG/M
3300025891\|Ga0209585_10475727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	518	Open in IMG/M
3300026498\|Ga0257156_1136439	Not Available	511	Open in IMG/M
3300027908\|Ga0209006_10772240	Not Available	781	Open in IMG/M
3300027910\|Ga0209583_10407163	Not Available	649	Open in IMG/M
3300028047\|Ga0209526_10617517	Not Available	692	Open in IMG/M
3300028819\|Ga0307296_10370356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	782	Open in IMG/M
3300031226\|Ga0307497_10732593	Not Available	513	Open in IMG/M
3300031546\|Ga0318538_10459725	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300031546\|Ga0318538_10525526	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300031561\|Ga0318528_10754193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	520	Open in IMG/M
3300031572\|Ga0318515_10046780	All Organisms → cellular organisms → Bacteria → Proteobacteria	2165	Open in IMG/M
3300031573\|Ga0310915_10941560	Not Available	604	Open in IMG/M
3300031573\|Ga0310915_10969238	Not Available	594	Open in IMG/M
3300031679\|Ga0318561_10018285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3213	Open in IMG/M
3300031680\|Ga0318574_10358795	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300031708\|Ga0310686_112642128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1176	Open in IMG/M
3300031708\|Ga0310686_119089095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2695	Open in IMG/M
3300031719\|Ga0306917_11016242	Not Available	647	Open in IMG/M
3300031724\|Ga0318500_10254621	Not Available	852	Open in IMG/M
3300031744\|Ga0306918_11238511	Not Available	575	Open in IMG/M
3300031747\|Ga0318502_10885372	Not Available	542	Open in IMG/M
3300031754\|Ga0307475_10685582	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300031763\|Ga0318537_10322601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	571	Open in IMG/M
3300031768\|Ga0318509_10775548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	531	Open in IMG/M
3300031770\|Ga0318521_10173517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1234	Open in IMG/M
3300031770\|Ga0318521_10198809	All Organisms → cellular organisms → Bacteria	1157	Open in IMG/M
3300031798\|Ga0318523_10577010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	554	Open in IMG/M
3300031835\|Ga0318517_10012033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	3125	Open in IMG/M
3300031845\|Ga0318511_10416170	Not Available	617	Open in IMG/M
3300031879\|Ga0306919_10358718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1114	Open in IMG/M
3300031893\|Ga0318536_10434888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	662	Open in IMG/M
3300031942\|Ga0310916_10013397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5565	Open in IMG/M
3300031942\|Ga0310916_11533620	Not Available	542	Open in IMG/M
3300031942\|Ga0310916_11573203	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300031946\|Ga0310910_10649188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	836	Open in IMG/M
3300031954\|Ga0306926_11063270	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300031954\|Ga0306926_11786508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	698	Open in IMG/M
3300031954\|Ga0306926_12526133	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300031962\|Ga0307479_10350159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1460	Open in IMG/M
3300032001\|Ga0306922_11573292	Not Available	655	Open in IMG/M
3300032010\|Ga0318569_10579554	Not Available	522	Open in IMG/M
3300032042\|Ga0318545_10082012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1118	Open in IMG/M
3300032042\|Ga0318545_10307137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	570	Open in IMG/M
3300032059\|Ga0318533_11247569	Not Available	543	Open in IMG/M
3300032064\|Ga0318510_10379417	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300032090\|Ga0318518_10456973	All Organisms → cellular organisms → Bacteria → Proteobacteria	654	Open in IMG/M
3300032261\|Ga0306920_101849650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Herbaspirillum → unclassified Herbaspirillum → Herbaspirillum sp. BH-1	850	Open in IMG/M
3300032261\|Ga0306920_103347622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	596	Open in IMG/M
3300032261\|Ga0306920_103845742	Not Available	548	Open in IMG/M
3300033289\|Ga0310914_11291579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	632	Open in IMG/M
3300033887\|Ga0334790_145143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	719	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.07%
Host-Associated	Host-Associated	0.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.81%
Aquatic	Environmental → Aquatic	9.26%
Plants	Host-Associated → Plants	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.89%
Freshwater	Environmental → Aquatic → Freshwater	7.41%
Sediment	Environmental → Aquatic → Sediment	1.85%
Peat	Environmental → Terrestrial → Peat	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	84.26%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.41%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.78%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.85%
Loam	Environmental → Terrestrial → Soil → Loam	1.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	49.07%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.48%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.70%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.70%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.78%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.85%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.85%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	31.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.74%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	13.89%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.56%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.70%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.78%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	2.78%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.85%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.93%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.93%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.93%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005947	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190	Environmental	Open in IMG/M
3300005980	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil leachate replicate DNA2013-203	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009632	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009760	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_100	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300014054	Permafrost microbial communities from Nunavut, Canada - A34_5cm_12M	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025439	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100 (SPAdes)	Environmental	Open in IMG/M
3300025457	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025891	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one (SPAdes)	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033887	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066794_102583802	3300005947	Soil	MELNRPPLVVAFELSEKRKAIVADALAGASAVVYLTE
Ga0066798_101276471	3300005980	Soil	MELNRPPLVVAFELSEKRKAIVADALAGASAVVYLTELDEAAR
Ga0075021_105235152	3300006354	Watersheds	MELSRPPLVVAFELSEKRKAIVADALAGASAVVYLTELDE
Ga0075425_1019911661	3300006854	Populus Rhizosphere	MEFSRPPLVVAFELSEKRKAIAADALAGASDVVYLTELD
Ga0099829_103324894	3300009038	Vadose Zone Soil	MELSRPPLVVAFELSEKRKAIVADALAGASTVVYLTEL
Ga0099828_119483532	3300009089	Vadose Zone Soil	LHWTDAPLVIAFALSEKRKAIVAAALAGASAVVYLTE
Ga0116218_12579571	3300009522	Peatlands Soil	MELSRPPLVVAFELSEKRKAIVANALAGASAVAYLTELDDAARTRFRVN*
Ga0116102_11866161	3300009632	Peatland	MDLSPLPLVVAFELSEKRKAIVADALAGASAVVYLTELD
Ga0116216_104368872	3300009698	Peatlands Soil	MELSRPPLVVAFELNEKRKAIVADALAGASAVVYLVAAELHR*
Ga0116131_10799553	3300009760	Peatland	MELSRPPLVVAFELSEKRKAIVADALAGASAVVYLTELDEAARAE
Ga0126374_106376041	3300009792	Tropical Forest Soil	MEFSRPPLVIAFELSEPRKAIVADTLAGVSDVVYLTELDEAART
Ga0126382_112903711	3300010047	Tropical Forest Soil	MELSRPPLVVAFELSERRKAIVADALAGASAVIYLTELDGAARAEALR
Ga0126373_129538151	3300010048	Tropical Forest Soil	MEFSRPPLVVAFELSETRKAIVAETLAGVSAVVYLTELD
Ga0126370_115491641	3300010358	Tropical Forest Soil	ANLGGAMELNRPPLVITFELSDRRKAIVTDALAGASAVVYLTELDEAAR*
Ga0126372_103478133	3300010360	Tropical Forest Soil	MEFSRPPLVIAFELSETRKAIVADTLAGASDVVYLTELDEAARAEALR
Ga0126372_110429672	3300010360	Tropical Forest Soil	MEFSRPPLVVAFELSKKRKAIVADALAGASDVVCLTELDEAARA
Ga0126378_113281173	3300010361	Tropical Forest Soil	MELSRPPLVVAFELSEKRKAIVADALAGASDVVYLTELDE
Ga0126379_126491961	3300010366	Tropical Forest Soil	MEFSRPPLVVAFELSEKRKAIVADALAGASDVVYLTELDEAAR
Ga0126379_128687561	3300010366	Tropical Forest Soil	MEFSRPPLVVAFELSEKRKAIVADALAGASDVVYLTEI
Ga0126381_1031750491	3300010376	Tropical Forest Soil	MDLSRPPLVVGFELSEKRKAIVADALAGASDVVYLT
Ga0136449_1025107461	3300010379	Peatlands Soil	MELSRPPLVVAFELGEKRKAIVADALAGVSAVVYLTELDEAARAE
Ga0136449_1029957932	3300010379	Peatlands Soil	MELSRSPLVVTFELSEKRKAIVADTLAGASAVVYLTELDEA*
Ga0126383_132845242	3300010398	Tropical Forest Soil	MEFSRPPLVVAFELSEKRKAIVADALAGASDVVCLTELDEASRAEALR
Ga0137363_100901384	3300012202	Vadose Zone Soil	MEFSRPPLVVAFELSEKRKAIVADTLAGVSAVVYLTELDE
Ga0137362_103351752	3300012205	Vadose Zone Soil	MEFNRPPLVVAFELSEKRKAIVADALAGASDVVYLTELDSVPSHA*
Ga0137381_110309012	3300012207	Vadose Zone Soil	MELSRPPLVVAFELSEKRKAIVADAPVGASAVVYLTELDEAAHETDN*
Ga0137379_112178501	3300012209	Vadose Zone Soil	MQLTRLPLVVAFELSEKRRTILTDALAGAAPVVYLTELDAAGRAEA
Ga0137378_101260451	3300012210	Vadose Zone Soil	MELNRLPLVVTFELSEQRKAIVNDALAGATDVVYLTE
Ga0137378_104745401	3300012210	Vadose Zone Soil	MEFSPPPLVIAFELSETRKAIVADTLAGASDVVYLTELDEAAR
Ga0137360_114805312	3300012361	Vadose Zone Soil	MEFSPPPLVIAFELSETRKAIVADTLAGASDVVYLPELDEAARAEAL
Ga0164300_109216352	3300012951	Soil	MELSRPPLVVAFELSERRKAIVADALAGASVVIYLTELDGTA
Ga0126369_112727151	3300012971	Tropical Forest Soil	MELSRPPLVVAFEMSQKHKAIVADNLAGASDVVYL
Ga0126369_117506262	3300012971	Tropical Forest Soil	MEFSRPPLVVAFELSEKRKAIVADTLAGASDVVYL
Ga0126369_117602151	3300012971	Tropical Forest Soil	MEFSRPPLVIAFELSEKRKAIVADALAGASDVVYLTELD
Ga0164309_114131812	3300012984	Soil	MELSRLPLVVAFELSEKRKAIVADALAGASAVVYLTELDEAAR
Ga0120135_10920392	3300014054	Permafrost	MELVRPPLVVAFELSEKRKAIVADALAGASAVVYLTELDEAARAEALCN
Ga0181526_102024752	3300014200	Bog	MKLSRSPLVVAFELSEKRKAIVADALAGAGAVVYLTELDEAARAEALR
Ga0181536_101179921	3300014638	Bog	MELSRPPLVVAFELSEKRKAIVADALAGASAVVYLTELDESDRAE
Ga0182033_102302403	3300016319	Soil	DLSRPPLVIGFELSEKRKAIVADALAGAGAVVYLGTG
Ga0182035_113203661	3300016341	Soil	MRLNRPLLVVAFELSERRKVIVADALAGAARVVYLTE
Ga0182034_113567072	3300016371	Soil	MALNRPPLVVAFELSEKRKAIVADALAGASAILYLTEVDEAARAE
Ga0182034_120721201	3300016371	Soil	MELSQPPLVVAFEVSEKRKAIVAEALAGTSAVVYLTE
Ga0182040_102448952	3300016387	Soil	MELSRPLVIAFALSQRRKAIVADALAGASAVVYLTELDETARA
Ga0182037_109885943	3300016404	Soil	MELSRPLVVAFALSQKRKAIVADALAGASAVVYLTELDET
Ga0182038_112423061	3300016445	Soil	MELSQPPLVVAFEVSEKRKAIVAEALAGTSAVVYLTELDHTARAEA
Ga0187853_104023101	3300017940	Peatland	MELSRPPLVVAFELSEKRKAIVADALAGASAVVYLTELD
Ga0187778_112384151	3300017961	Tropical Peatland	MELNRPPLVVAFGLSEKRKAIVADALAGASAVVYLTELDQADRAEVLR
Ga0187822_103278231	3300017994	Freshwater Sediment	MELSQPALVVAFALSQKRRAIAADALAGASAVVHLTELDETARTE
Ga0187888_10224335	3300018008	Peatland	MELSRPPLVVAFELSEKRKAIVADALAGASAVVYLTELDEAARAEALR
Ga0210406_102794741	3300021168	Soil	MELSRPPLVVAFELSEKRKAIVADALAGASAVVYL
Ga0210388_108052643	3300021181	Soil	MELSGPLVVAFALSQKRKAIVADALAGASAVVYLTELGETARTEALR
Ga0210383_103646461	3300021407	Soil	MGLSRPPLVVAFELSEKRKAIVADALAGASAVVYLTELDEAARA
Ga0210410_113773892	3300021479	Soil	MELSRPPLVVAFELSEKRKAIVADALAGASAVVYLTEL
Ga0126371_138928302	3300021560	Tropical Forest Soil	LNPPPLVVAFELSQRRKSIVADALAGASAIIYLAELDRAAR
Ga0208323_10216761	3300025439	Peatland	MELSRPPLIVAFELSEKHKAIVAHALAGASAVVYLTELDEA
Ga0208850_10384271	3300025457	Arctic Peat Soil	MELSRPPLVVAFELSEKRKAIVADALAGASAVVYLT
Ga0208850_10543111	3300025457	Arctic Peat Soil	MELNRPPLVVAFELSEKRKAIVADALAGASAVVYLT
Ga0209585_104757271	3300025891	Arctic Peat Soil	MELSRPPLVVAFELSEKRKAIVADALAGASAVVYLIEL
Ga0257156_11364391	3300026498	Soil	LGCMEFSRPPLVVAFELSEKRKAIVADTLAGVSAVVY
Ga0209006_107722402	3300027908	Forest Soil	MELSRPPLVVAFELSEKRKAIVADALAGASAVVYLTELDEA
Ga0209583_104071631	3300027910	Watersheds	MELSRPPLVVAFELSDRHKAIVADALSGASTVVYLTELDEAA
Ga0209526_106175172	3300028047	Forest Soil	LSRPPLVVAFELSERRKAIVAGALAGASVVIYLTELDGTARAEAL
Ga0307296_103703563	3300028819	Soil	MELSRPQLVVAFELSEKRNNKAIVADALAGASAVV
Ga0307497_107325932	3300031226	Soil	MELSRPPLVVAFELSEKRKAIVADALAGASAVVYLTELDEAARTEAL
Ga0318538_104597251	3300031546	Soil	MEFSRPPLVIAFELSEKRKAIVADALAGASNVVYL
Ga0318538_105255262	3300031546	Soil	MELSRPPLVVAFELSQKRKAIVADALAGASDVVYL
Ga0318528_107541931	3300031561	Soil	LSRPPLVVAFGLSEKRKAIVADALAGASDVVCLTELD
Ga0318515_100467801	3300031572	Soil	MEFSRPPLVVAFELSEPRKAIVADTLAGVSDVVYLTDLDEA
Ga0310915_109415602	3300031573	Soil	MGLNRPLLVVAFELSERRKVIVADALAGAARVVYLTELDEMARAEAL
Ga0310915_109692381	3300031573	Soil	LNRPLLVVAFELSERRKVIVADALAGAARVVYLTELDE
Ga0318561_100182854	3300031679	Soil	MEFSRPPLVVAFGLSEKRKAIVADALAGASDVVCLTEL
Ga0318574_103587951	3300031680	Soil	MDLSRPPLVIGFELSEKRKAIVADALAGAGAVVYLGTG
Ga0310686_1126421285	3300031708	Soil	MELSRPPLVVAFKLSEKRKAIVADALAGASAVVYLT
Ga0310686_1190890951	3300031708	Soil	MELSRPPLVVTFELSEKRKAIVADALAGASAVVYLTELN
Ga0306917_110162421	3300031719	Soil	MRLNRPLLVVAFELSERRKVIVADALAGAARVVYLTELDETARAE
Ga0318500_102546211	3300031724	Soil	MELSRPLVIAFALSQRRKAIVADALAGASAVVYLTE
Ga0306918_112385111	3300031744	Soil	MALKRPPLVVTFALSEKRKAIVADALAGASPVLYLTELDEA
Ga0318502_108853722	3300031747	Soil	MEFSRPPLVIAFELSEKRKAIVADALAGASNVVYLTELDKAARAE
Ga0307475_106855821	3300031754	Hardwood Forest Soil	MELSGPLVVAFALSQKRKAIVADALAGASAVVYLTELDET
Ga0318537_103226011	3300031763	Soil	LSRPPLVVAFELSEKRKAIVADALAGASDVVYLTELDEAARAE
Ga0318509_107755481	3300031768	Soil	MELSPPPLVVAFELSERRKSIVADGLAGASPIVCLAELDGTARVEALRS
Ga0318521_101735172	3300031770	Soil	MEFSRPPLVIAFELSEKRKAIVADTLAGASDVVYLTDLDEA
Ga0318521_101988091	3300031770	Soil	MDLSRPPLVVTFELSERRKVIVANALSGASTVVYLTKLD
Ga0318523_105770101	3300031798	Soil	LGCMEFTRPPLVVAFELSEKRKAIVADALAGVSAVIYLTEID
Ga0318517_100120333	3300031835	Soil	MEFSRPPLVVAFELSEPRKAIVADTLAGVSDVAYLTELDE
Ga0318511_104161701	3300031845	Soil	LSRPSLVVAFELSERSKAIVADALAGASAVVYLTELRGTVRA
Ga0306919_103587182	3300031879	Soil	MNLSRSPLVVTFKLSERRKAIVADVLAGASAVVYLTELDGAARAEVGRHT
Ga0318536_104348881	3300031893	Soil	LGCMEFTRPPLVVAFELSEKRKAIVADALAGVSAVIYLTEIDDVARAE
Ga0310916_100133976	3300031942	Soil	MLGYMEFSRPPLVVAFELSEKRKALVADTLAGASDVVLPHRPR
Ga0310916_115336202	3300031942	Soil	MELSRPPLVVAFELSEKRKAIVADALAGTSAVVYLTELDEAAP
Ga0310916_115732032	3300031942	Soil	MELSRPLVVAFALSQKHKAIVADALAGASAVVYLTELDETARTE
Ga0310910_106491882	3300031946	Soil	MGLSRPSLVVAFELSERSKAIVADALAGASAVIYLTELRGTVRAE
Ga0306926_110632702	3300031954	Soil	LSRPPLVVAFELSQKRKAIVADALAGASDVVYLTELDE
Ga0306926_117865083	3300031954	Soil	MEFSRPPLVIAFELSETRKAIVADALAGVSAVVYLTELD
Ga0306926_125261332	3300031954	Soil	MPAGPPLVVAFQLSEKRKPIVTAGLAGAAPVIYLTELDAAERAAA
Ga0307479_103501591	3300031962	Hardwood Forest Soil	MELSRPPLVVAFALSPKRKAIVTDALAGASAVVYLTELDEMARTEALR
Ga0306922_115732921	3300032001	Soil	MGLNRPLLVVAFELSERRKAIVADALAGAARVVYLTELD
Ga0318569_105795541	3300032010	Soil	MEFSRPPLVIAFELSEPRKAIVADILAGVSDVVYL
Ga0318545_100820122	3300032042	Soil	MDLSRPPLVIGFELSEKRKAIVADALAGAGAVVYLG
Ga0318545_103071371	3300032042	Soil	LSRPPLVVAFELSEKRKAIVADALAGASDVVYLTDL
Ga0318533_112475692	3300032059	Soil	MELSRPPLVIAFELSETRKAIVADTLAGASDVVYLTELD
Ga0318510_103794172	3300032064	Soil	MEFSRPPLVIAFELSEPRKAIVADILAGVSDVVYLTE
Ga0318518_104569731	3300032090	Soil	MDLSRPPLVVGFELSEKRKAIVADALAGASAVVYL
Ga0306920_1018496501	3300032261	Soil	MNLSRSPLVVTFKLSERRKAIVADVLAGASAVAYLTELDEAAEVLR
Ga0306920_1033476223	3300032261	Soil	LSRPPLVVAFELSEKRKAIVADALAGASDVVYLTELDE
Ga0306920_1038457422	3300032261	Soil	MEFSRPTLVIAFELSKKRKAIVADALVGASDVVYLTELD
Ga0310914_112915791	3300033289	Soil	VVILGCMELSRPPLVVAFELSEKRKAIVADALAGA
Ga0334790_145143_592_717	3300033887	Soil	MELSRPPLVVAFELSEKRKAIVADALAGASAVVYLTELDEAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F090473

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences