Metagenome Family F090218

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090218
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	60 residues
Representative Sequence	MKSVTKIRTLMLTLFLLLGTIPVSAVERPFALNGTGVATLITDEAGHLIGAIPTGSGTAT
Number of Associated Samples	88
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	93.52 %
% of genes near scaffold ends (potentially truncated)	96.30 %
% of genes from short scaffolds (< 2000 bps)	93.52 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (57.407 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere (10.185 % of family members)
Environment Ontology (ENVO)	Unclassified (53.704 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (72.222 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 20.45% β-sheet: 23.86% Coil/Unstructured: 55.68%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00072	Response_reg	6.48
PF00196	GerE	5.56
PF13302	Acetyltransf_3	4.63
PF00355	Rieske	3.70
PF05402	PqqD	2.78
PF00884	Sulfatase	1.85
PF11954	DUF3471	0.93
PF13505	OMP_b-brl	0.93
PF08241	Methyltransf_11	0.93
PF00467	KOW	0.93
PF14524	Wzt_C	0.93
PF13471	Transglut_core3	0.93
PF14312	FG-GAP_2	0.93
PF00076	RRM_1	0.93
PF13031	DUF3892	0.93
PF13517	FG-GAP_3	0.93
PF00656	Peptidase_C14	0.93
PF01656	CbiA	0.93
PF00903	Glyoxalase	0.93
PF13485	Peptidase_MA_2	0.93
PF00400	WD40	0.93
PF12680	SnoaL_2	0.93
PF00583	Acetyltransf_1	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG4249	Uncharacterized conserved protein, contains caspase domain	General function prediction only [R]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.41 %
Unclassified	root	N/A	42.59 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.41 %
Unclassified	root	N/A	42.59 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	57.41 %
Unclassified	root	N/A	42.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.59 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	34.26 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.78 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.59 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	12.96 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	12.04 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	1.85 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.59 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	12.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.04 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	0.93 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	0.93 %
Phycisphaerae	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae	0.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.59 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	12.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.04 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.93 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	0.93 %
Phycisphaerales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales	0.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.59 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.04 %
Acidipila	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila	11.11 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	0.93 %
unclassified Phycisphaerales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales	0.93 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.93 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.59 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.04 %
Acidipila rosea	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → Acidipila rosea	11.11 %
Phycisphaerales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	0.93 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.93 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	0.93 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c1715293	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	528	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_14451141	Not Available	2402	Open in IMG/M
3300000956\|JGI10216J12902_102395143	Not Available	597	Open in IMG/M
3300004156\|Ga0062589_102601856	Not Available	525	Open in IMG/M
3300004480\|Ga0062592_101476850	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300004643\|Ga0062591_100435259	Not Available	1099	Open in IMG/M
3300005290\|Ga0065712_10256365	Not Available	947	Open in IMG/M
3300005290\|Ga0065712_10264988	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	920	Open in IMG/M
3300005293\|Ga0065715_10507784	All Organisms → cellular organisms → Bacteria → Acidobacteria	774	Open in IMG/M
3300005293\|Ga0065715_10767265	Not Available	623	Open in IMG/M
3300005332\|Ga0066388_104482241	Not Available	711	Open in IMG/M
3300005334\|Ga0068869_100740580	Not Available	841	Open in IMG/M
3300005343\|Ga0070687_100790765	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → Acidipila rosea	671	Open in IMG/M
3300005345\|Ga0070692_10809444	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	640	Open in IMG/M
3300005345\|Ga0070692_10955728	Not Available	596	Open in IMG/M
3300005365\|Ga0070688_101442175	Not Available	559	Open in IMG/M
3300005444\|Ga0070694_100464710	Not Available	1001	Open in IMG/M
3300005444\|Ga0070694_101504528	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300005444\|Ga0070694_101924364	Not Available	505	Open in IMG/M
3300005456\|Ga0070678_101944130	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → Acidipila rosea	556	Open in IMG/M
3300005539\|Ga0068853_100480899	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1171	Open in IMG/M
3300005539\|Ga0068853_101698726	All Organisms → cellular organisms → Bacteria → Acidobacteria	612	Open in IMG/M
3300005545\|Ga0070695_101848733	All Organisms → cellular organisms → Bacteria → Acidobacteria	507	Open in IMG/M
3300005546\|Ga0070696_101378728	Not Available	600	Open in IMG/M
3300005549\|Ga0070704_100550547	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1008	Open in IMG/M
3300005563\|Ga0068855_102039189	Not Available	579	Open in IMG/M
3300005564\|Ga0070664_100666337	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → Acidipila rosea	968	Open in IMG/M
3300005564\|Ga0070664_101234216	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300005577\|Ga0068857_101643417	Not Available	627	Open in IMG/M
3300005577\|Ga0068857_101899598	Not Available	583	Open in IMG/M
3300005616\|Ga0068852_101192921	Not Available	782	Open in IMG/M
3300005616\|Ga0068852_101821348	Not Available	631	Open in IMG/M
3300005618\|Ga0068864_100003842	All Organisms → cellular organisms → Bacteria	12376	Open in IMG/M
3300005618\|Ga0068864_100241965	All Organisms → cellular organisms → Bacteria → Proteobacteria	1672	Open in IMG/M
3300005719\|Ga0068861_101506066	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	660	Open in IMG/M
3300005840\|Ga0068870_10838185	Not Available	645	Open in IMG/M
3300005841\|Ga0068863_100816246	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300005841\|Ga0068863_101218607	All Organisms → cellular organisms → Bacteria → Acidobacteria	759	Open in IMG/M
3300005841\|Ga0068863_102613239	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300006755\|Ga0079222_11192940	Not Available	681	Open in IMG/M
3300006844\|Ga0075428_102395586	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300006847\|Ga0075431_100674514	Not Available	1013	Open in IMG/M
3300006852\|Ga0075433_10061344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3294	Open in IMG/M
3300006853\|Ga0075420_100753014	Not Available	839	Open in IMG/M
3300006881\|Ga0068865_101345984	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → Acidipila rosea	636	Open in IMG/M
3300006894\|Ga0079215_10898943	Not Available	635	Open in IMG/M
3300006954\|Ga0079219_10570703	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300006969\|Ga0075419_11146527	Not Available	571	Open in IMG/M
3300009011\|Ga0105251_10362725	Not Available	662	Open in IMG/M
3300009093\|Ga0105240_10711419	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → Acidipila rosea	1095	Open in IMG/M
3300009098\|Ga0105245_12973000	Not Available	525	Open in IMG/M
3300009100\|Ga0075418_10747055	Not Available	1055	Open in IMG/M
3300009100\|Ga0075418_13101199	All Organisms → cellular organisms → Bacteria → Acidobacteria	506	Open in IMG/M
3300009174\|Ga0105241_10295140	All Organisms → cellular organisms → Bacteria	1389	Open in IMG/M
3300009174\|Ga0105241_10901238	All Organisms → cellular organisms → Bacteria → Acidobacteria	821	Open in IMG/M
3300009174\|Ga0105241_11387586	Not Available	672	Open in IMG/M
3300009176\|Ga0105242_12278790	All Organisms → cellular organisms → Bacteria → Acidobacteria	588	Open in IMG/M
3300009545\|Ga0105237_10872027	Not Available	907	Open in IMG/M
3300010036\|Ga0126305_10202368	Not Available	1260	Open in IMG/M
3300010038\|Ga0126315_10023958	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3108	Open in IMG/M
3300010039\|Ga0126309_10393539	Not Available	827	Open in IMG/M
3300010040\|Ga0126308_10866544	Not Available	628	Open in IMG/M
3300010041\|Ga0126312_10211940	All Organisms → cellular organisms → Bacteria → Proteobacteria	1355	Open in IMG/M
3300010042\|Ga0126314_10027735	All Organisms → cellular organisms → Bacteria	3514	Open in IMG/M
3300010042\|Ga0126314_11060139	Not Available	603	Open in IMG/M
3300010047\|Ga0126382_11852930	Not Available	569	Open in IMG/M
3300010166\|Ga0126306_11868708	Not Available	503	Open in IMG/M
3300010358\|Ga0126370_10363880	Not Available	1174	Open in IMG/M
3300010399\|Ga0134127_10786666	Not Available	999	Open in IMG/M
3300011119\|Ga0105246_10096768	All Organisms → cellular organisms → Bacteria	2140	Open in IMG/M
3300013100\|Ga0157373_11171921	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	578	Open in IMG/M
3300013100\|Ga0157373_11258204	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → Acidipila rosea	559	Open in IMG/M
3300013297\|Ga0157378_12003351	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	629	Open in IMG/M
3300013306\|Ga0163162_10243889	Not Available	1928	Open in IMG/M
3300013308\|Ga0157375_11172056	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → Acidipila rosea	901	Open in IMG/M
3300013308\|Ga0157375_12203965	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	656	Open in IMG/M
3300013754\|Ga0120183_1011077	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300015372\|Ga0132256_100856956	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1025	Open in IMG/M
3300018466\|Ga0190268_11590348	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	575	Open in IMG/M
3300018476\|Ga0190274_13219809	Not Available	549	Open in IMG/M
3300019356\|Ga0173481_10874489	Not Available	504	Open in IMG/M
3300025893\|Ga0207682_10345612	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → Acidipila rosea	700	Open in IMG/M
3300025904\|Ga0207647_10501505	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	677	Open in IMG/M
3300025908\|Ga0207643_10330889	Not Available	953	Open in IMG/M
3300025911\|Ga0207654_10181983	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1372	Open in IMG/M
3300025911\|Ga0207654_10837323	Not Available	665	Open in IMG/M
3300025913\|Ga0207695_11236074	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → Acidipila rosea	627	Open in IMG/M
3300025914\|Ga0207671_10762111	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	768	Open in IMG/M
3300025933\|Ga0207706_10441856	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → Acidipila rosea	1126	Open in IMG/M
3300025936\|Ga0207670_10000875	All Organisms → cellular organisms → Bacteria	15855	Open in IMG/M
3300025942\|Ga0207689_10937982	Not Available	730	Open in IMG/M
3300026035\|Ga0207703_10436712	All Organisms → cellular organisms → Bacteria	1221	Open in IMG/M
3300026035\|Ga0207703_11333501	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300026088\|Ga0207641_11082458	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300026116\|Ga0207674_10617715	All Organisms → cellular organisms → Bacteria → Acidobacteria	1047	Open in IMG/M
3300026118\|Ga0207675_101607881	Not Available	670	Open in IMG/M
3300026142\|Ga0207698_12258974	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	556	Open in IMG/M
3300027873\|Ga0209814_10181924	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300027880\|Ga0209481_10613103	Not Available	564	Open in IMG/M
3300027907\|Ga0207428_10980878	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	594	Open in IMG/M
3300028381\|Ga0268264_10653341	All Organisms → cellular organisms → Bacteria	1041	Open in IMG/M
3300031548\|Ga0307408_102059241	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → Acidipila rosea	550	Open in IMG/M
3300031562\|Ga0310886_10993151	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → Acidipila rosea	538	Open in IMG/M
3300031903\|Ga0307407_10568767	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300031911\|Ga0307412_10867467	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300031995\|Ga0307409_100905792	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300032002\|Ga0307416_103462362	Not Available	528	Open in IMG/M
3300032004\|Ga0307414_10610502	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	65.74%
Environmental	Environmental	34.26%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	65.74%
Terrestrial	Environmental → Terrestrial	34.26%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	36.11%
Soil	Environmental → Terrestrial → Soil	34.26%
Rhizoplane	Host-Associated → Plants → Rhizoplane	29.63%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	31.48%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	25.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	23.15%
Loam	Environmental → Terrestrial → Soil → Loam	11.11%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.70%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	31.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	25.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.19%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.70%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.78%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	10.19%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	9.26%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.26%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	8.33%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	7.41%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.41%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	5.56%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	3.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.78%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300013754	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C1.rep2	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_17152932	3300000033	Soil	MKYFTKIRTLMFVTXLLLGTXPVSAXERPFAMKGTGVAPLIVDEAGHLIGATPTGSGTAT
ICChiseqgaiiFebDRAFT_144511411	3300000363	Soil	MKYFSKIHALMLMLFMFAGTTIPVSAVERPFALSGTGVATLITNEAGMPIGAIPTGSGTATHL
JGI10216J12902_1023951431	3300000956	Soil	MKQVTIIRTLMLTFLLLLGSIPTFAVERPFALKGAGVAPLITDEAGHLIGATPTGSGTATYLGQWTVAGNVQYTPDENGV
Ga0062589_1026018562	3300004156	Soil	MKRFMKIHTLMLVVFLLLGTIQVSATERPFALSGTGVATLIVDGSGNLIGATPTGS
Ga0062592_1014768502	3300004480	Soil	MKRFTKIRTLMPILFLLLGTIPTSAVERPFAINGTGVATLVTDESGHLIGAIP
Ga0062591_1004352592	3300004643	Soil	MKIRTLILTLFLLLGTIPASAVERPFALNGAGVAPLITDESGHVIGATPT
Ga0065712_102563651	3300005290	Miscanthus Rhizosphere	MKRFTKIHVLMLTLFVLLATIPASAVERPFAINGSGVATLITDPSGNP
Ga0065712_102649881	3300005290	Miscanthus Rhizosphere	MKRFTTIRTLMLIPFLLLGTIPVSAVERPFALNGTGVATLIVSESGIPVGAVPTGSGTATHLGQWTVAG
Ga0065715_105077841	3300005293	Miscanthus Rhizosphere	MKYFTKIRTLMFVTLLLLGTIPVSAVERPFAMKGTGVATLVTDEAGH
Ga0065715_107672651	3300005293	Miscanthus Rhizosphere	MKRFTKIRTLLPVLFLLLGTIPVSAAERPFALSGTGVATLIVNEQGMPIGAIPTGSG
Ga0066388_1044822412	3300005332	Tropical Forest Soil	MKHFTKIRTLIVMLFLLLGTIPASATERPFALNGSGVATLVTDGQGHLIGAIPTGSGTATYLGKWTVSGTVSYIPDSN
Ga0068869_1007405801	3300005334	Miscanthus Rhizosphere	MKRFMKIRTLMLVTFLLLGTIPASAIERPFALKGTGVATLIIDENGHLVGATPTGSGTATHLGQWTVSGNV
Ga0070687_1007907651	3300005343	Switchgrass Rhizosphere	MKRFTKIRTLMPILFLLLGTIRVSAVERPFALSGTGVATLITNEA
Ga0070692_108094442	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MKYFTKIRTLMFVTLLLLGTIPVSAVERPFAMKGTGVATLVTDEAGHLIGAVPTGSGTATHLGQWTVNGNV
Ga0070692_109557282	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MKHFTKIRTLMLGLLLLLGTIPVSAVERPFALHGSGVATLITDPSGIPIGAIATGSGTATHLGQWTVTGNPKYTLDNNGVFH
Ga0070688_1014421751	3300005365	Switchgrass Rhizosphere	MKRFTKMSALILVLFLLVGPISALAVERPFALNGKGVAPLIIDGSGNLIGATPTGSGTATYLGQWTVAGTVHYTPVNGVLK
Ga0070694_1004647101	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MNHLLKIRTLMLALFMFLGTIPTYAVERPFALKGTGVATLITDGSGHLIGAIPT
Ga0070694_1015045282	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MKRFTKIRTLMPILFLLLGTIPTSAVERPFAINGTGVATLVTDESGHLIGAIPTGSGT
Ga0070694_1019243641	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MKRFMKIRTLMLVTFLLLGTIPASAVERPFALKGSGVATLITDANGNLVGAIPTGSGTATHLGQWTVTGHVTYTPDSNGVL
Ga0070678_1019441301	3300005456	Miscanthus Rhizosphere	MKRFTKIRTLMPILFLLLGTIRVSAVERPFALSGTGVATLITNEAGMPIGAIPTGSG
Ga0068853_1004808991	3300005539	Corn Rhizosphere	MKRFTTIRTLMLIPFLLLGTISVSAVERPFALNGTGVATLIVSESGIPVGAVPTGSGTATHLGQW
Ga0068853_1016987262	3300005539	Corn Rhizosphere	MKYFTKIRTLMPLLFLLLGTIPVSAVERPFALKGTGVATLVTDRSGHLIGAIPTGSGTAT
Ga0070695_1018487331	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MKRFTQIRTLMLMVAMLLGTTIPASAIERPFALKGTGVATLVTDDAGHLIGAIPTGSGTATYLGQWTVSGNVHYIPDQNG
Ga0070696_1013787281	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MKHFTMIRTLMLMLVLLVGMTPASAVERPFALSGTGVATLVTDGSGHLIGAIPTGSGTATYLGQWTVAGTVHYIPDSN
Ga0070704_1005505472	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MKYFTKIRTLMFVTLLLLGTIPVSAVERPFAMKGTGVATLVTDEAGHLSGAVPTGSGTATHLGQWTVTAT*
Ga0068855_1020391891	3300005563	Corn Rhizosphere	MKRFTKIRTLMPILFLLLGTIPTSAVERPFAINGTGVATLVTDESGHLIGAIPTGSGTATHLGQWTVTGKVNYIPDANGV
Ga0070664_1006663371	3300005564	Corn Rhizosphere	MKRFTKIRTLMPILFLLLGTIRVSAVERPFALSGSGVATLILNEQGIPIGAIPTGSGTATHLGQWTVTG
Ga0070664_1012342162	3300005564	Corn Rhizosphere	MKRLMKIRTLMIVTFLLLGTIPASAVERPFALKGTGVVTLITDESGHLIGAIPTGSGTATHL
Ga0068857_1016434171	3300005577	Corn Rhizosphere	MKLFTKIRTLMPVLFLLLATIPVSAVERPFALSGSGVAALIIDEAGHPIGANATGSGTATHLGQ
Ga0068857_1018995982	3300005577	Corn Rhizosphere	MKHFTKIRTLMFMLFLLLGTIPVSAVERPFALKGSGVATLITDEAGHPIGAIP
Ga0068852_1011929211	3300005616	Corn Rhizosphere	MKRFMKIRTLMLVTFLLLGTMPALAVERPFALKGTGVAPLIIDENGHLVGATPTGSGTA
Ga0068852_1018213481	3300005616	Corn Rhizosphere	MKHLSKLRALMLLPFLLLGTISAAAVERPFALSGTGVATIITDEAG
Ga0068864_1000038421	3300005618	Switchgrass Rhizosphere	MKYFTKIRTLMPLLFLLLGTIPVSAIERPFALKGTGVATLVTDGSGHLIGAIPTGSGTATYLGQWTV
Ga0068864_1002419653	3300005618	Switchgrass Rhizosphere	MKRFTKIHVLMITLFMLLGTIPASAVERPFAINGSGVATLITDPSGNPIGAIATGAGTATHLGQWTVTGNPKYTPDSN
Ga0068861_1015060661	3300005719	Switchgrass Rhizosphere	MKRFTTIRTLMLIPFLLLGTIPVSAVERPFALNGTGVATLIVNESGIPVGAVPTGSGTATHL
Ga0068870_108381851	3300005840	Miscanthus Rhizosphere	MKRFTKIRTLMVALLLLLGTIPVSAVERPFALKGTGVATLILNESGLPIGAIPTGSGTATHLGQWTVTGNVKY
Ga0068863_1008162462	3300005841	Switchgrass Rhizosphere	MKHLSKLRALMLVPFLLLGTIPAAAVERPFALSGTGVATIVTDEAGHLIGATPTGSGTATYLGQWTV
Ga0068863_1012186072	3300005841	Switchgrass Rhizosphere	MKRFMKIRTLMLVTLLLLVTIPASAVERPFALKGTGVATLLTDSNG
Ga0068863_1026132392	3300005841	Switchgrass Rhizosphere	MKYFTKIRTLMFVTLLLLGTIPVSAVERPFAMKGTGVA
Ga0079222_111929401	3300006755	Agricultural Soil	MKYFTKIRTLMFVTFLLLGTMPVSAVERPFAMKGTGVATLVIDEAGHLIGATPTG
Ga0075428_1023955861	3300006844	Populus Rhizosphere	MKSVTKIRTLMLTLFLLLGTIPVSAVERPFALNGTGVATLITDEAGHLIGAIPTGSGTAT
Ga0075431_1006745142	3300006847	Populus Rhizosphere	MKHFTKIRTLMLTLFMLLATIPASAIERPFALHGSGVATLITD*
Ga0075433_100613441	3300006852	Populus Rhizosphere	MKHFTKIRTLMVMVFLLLGTIPATAVERPFALKGAGVATLITDEQGHLIGAIPTGSGTATYL
Ga0075420_1007530141	3300006853	Populus Rhizosphere	MNRFMKIRTLMLTAFLLLGTIPASAVERPFALNGAGVATLITD
Ga0068865_1013459841	3300006881	Miscanthus Rhizosphere	MKRFTKIRTLLPVLFLLLGTIPVSAAERPFALSGTGVATLIVNEQGMPIGAIPTGSGTATHLGQWTVT
Ga0079215_108989431	3300006894	Agricultural Soil	MKRFTKIRTLMLIPFLLLGTIPASAVERPFALHGAGVATLITDESGNLI
Ga0079219_105707032	3300006954	Agricultural Soil	MKYFTKIRTLMFVTFLLLGTMPVSAVERPFAMKGTGVATLVIDEAGHLIGATPTGSGTATHLGQWAVTGN
Ga0075419_111465271	3300006969	Populus Rhizosphere	VKRFMKIRTMMVALLLLLGTIPVSAVERPFALKGTGVATLILNESGIPIGAIPTGSG
Ga0105251_103627252	3300009011	Switchgrass Rhizosphere	MKRFTKIHVLMITLFMLLGTIPASAVERPFAINGSGVATLI
Ga0105240_107114192	3300009093	Corn Rhizosphere	MKYFTKIRTLLPVLFLLLGTIPVSATERPFALSGTGVATLIVDGSGNLIGATQTGSGT
Ga0105245_129730001	3300009098	Miscanthus Rhizosphere	MKRFTQLSTVMAIIFLLLGSIPVSAVERPFALNGSGVVTLITDESGNLVGALPTGSGTATYLGQWTVSGTVKYT
Ga0075418_107470551	3300009100	Populus Rhizosphere	MKRFMKIRTLMPILFLLLGTIPVSAVERPFALNGAGVATLLSLMNRVT*
Ga0075418_131011991	3300009100	Populus Rhizosphere	MKRFTKIRTLLPILFLLLGTIPVSAVERPFALNGSGVATLVT
Ga0105241_102951403	3300009174	Corn Rhizosphere	MKHLSKLRALMLVPFLLLGTIPAAAVERPFALNGTGVATLITDDAGHLIGAIPTGSGTATYLG
Ga0105241_109012382	3300009174	Corn Rhizosphere	MKRFMKIRTLMLVTLLLLGTIPASAVERPFALKGTGVATLLTDSNGNL
Ga0105241_113875861	3300009174	Corn Rhizosphere	MKRFTKIRNLLPVLFLLLGTIPVSAAERPFALSGTGVATPIVNEQGMPIGAIPTGSGTAT
Ga0105242_122787902	3300009176	Miscanthus Rhizosphere	MAMKNFSKIRTLMVMVFMLLGTIPASAVERPFALNGSGVATLVTDESGRPVSAIATASGTATHLGRWTVSGNVT
Ga0105237_108720271	3300009545	Corn Rhizosphere	MKRFTQISTVMAIIFLLLASIPVSAVERPFALNGSGVVTLITDE
Ga0126305_102023682	3300010036	Serpentine Soil	MAMKSFTKIRTLIVMLFLLLGTIPASAVERPFALSGAGVATLITDESGNLVGAIATGSGTSTHLGQWTVAGTVK
Ga0126315_100239583	3300010038	Serpentine Soil	MKRFTKIRTLMPILFLLLGTIPVSAVERPFALSGSGVATVITNEAGMPIGAIATGSGTATHLGQWTV
Ga0126309_103935391	3300010039	Serpentine Soil	MLTIVLLLGALPVAAAERPFALNGSGVATFITNEAGVLVVANVTASGTAT
Ga0126308_108665441	3300010040	Serpentine Soil	MKRFTKIHALMLTLLVLLATIPVSAVERPFALNGSGVATLIT
Ga0126312_102119403	3300010041	Serpentine Soil	MLTLFVLLGTIPVSAVERPFAINGSGVATLITDPSGNPTGAIATGAGTATHLGQWTVVGDVKYTPDSNGVL
Ga0126314_100277351	3300010042	Serpentine Soil	MPILFLLLGTISASAIERPFALNGTGVATLVTDESGNLIGAIPTGSGTATHLGQWTVSGTVKYTPDNGVLR
Ga0126314_110601392	3300010042	Serpentine Soil	MLTLFVLLGTIPALAVERPFALSGTGVATLITDESGNLIGAVATGSGTATHLGQWTVAGTVKYTPDNGVLRS
Ga0126382_118529302	3300010047	Tropical Forest Soil	MPILFLLLGTIPVSAVERPFALNGAGVATLVTDESGHLIGAIPTGSGTATHLGQWTVAGTVHYIPDN
Ga0126306_118687082	3300010166	Serpentine Soil	MVMKRFTKIRTLMPILFLLLGTIPASAVERPFALNGVGVAPLITDESGNLIGATPTASGTATHLGQWTVAGTVKYTPD
Ga0126370_103638801	3300010358	Tropical Forest Soil	MAMKHLTKIRTLMLTLFLLLGTIPTYAVERPFALKGAGVATLITDESGHLIGA
Ga0134127_107866661	3300010399	Terrestrial Soil	MKRFTKIRTLILTLFVLLGTIPASAVERPFALNGTGVATLITDGSGHLIGANPT
Ga0105246_100967684	3300011119	Miscanthus Rhizosphere	MSALILVLFLLVGPISALAVERPFALNGKGVAPLIIDGSGNLIGATPTGSGTATYLGQWTVAGTVHYTPVN
Ga0157373_111719211	3300013100	Corn Rhizosphere	MKRFTKIRTLMPILFLLLGTIPVSAVERPFALNGVGVA
Ga0157373_112582042	3300013100	Corn Rhizosphere	MKYFTKIRTLLPVLFLLLGTIPVSAAERPFALSGTGVATLIVNEQGLPIGAVPTGSGTATHLGQW
Ga0157378_120033512	3300013297	Miscanthus Rhizosphere	MKRFMKIRTLMLVTFLLLGTIPASAVERPFALKGSCVATLITDANGN
Ga0163162_102438891	3300013306	Switchgrass Rhizosphere	MKHLSKLRALMLVPFLLLGTIPAAAVERPFALNGTGVATLI
Ga0157375_111720562	3300013308	Miscanthus Rhizosphere	MKYFTKIRTLLPVLFLLLGTIPVSAVERPFALSGT
Ga0157375_122039652	3300013308	Miscanthus Rhizosphere	MVMKRFMKIRTLMLVTFLLLGTMPALAVERPFALKGTGVAPLIIDENGHLVGATPTGSGTATHLGQWTVSGNVAY
Ga0120183_10110771	3300013754	Terrestrial	MVMKRFSKIRTLMPILFLLLGTIPVSAVERPFALNGAGVATLITDESGNLIGAIPTGSGTATHLGQWT
Ga0132256_1008569562	3300015372	Arabidopsis Rhizosphere	MKHFTKIRTLMLTLFLLLGTMPTYAVERPFALKGAGVATLITDEAGHLIGATPTVSVPLCLCG*
Ga0190268_115903481	3300018466	Soil	MKRFTKIRTLMVMLVVLLGTIPASAVERPFALNGSGVATLITNEAGMPIGAIPTGSGTATHLGQWTVAGK
Ga0190274_132198091	3300018476	Soil	MKRFTKIRALMVMLFLMLGTIPASAAERPFALNGAGVATLITNESGLPIG
Ga0173481_108744891	3300019356	Soil	MKGFTKIRTLTLMLLLLLGTTIPASAVERPFALNGTGVATLVTDGAGHLIGAIPTGSGTATYLGQWTVSGNVAYTPD
Ga0207682_103456122	3300025893	Miscanthus Rhizosphere	MKRFTKIRTLMPILFLLLGTIRVSAVERPFALSGT
Ga0207647_105015051	3300025904	Corn Rhizosphere	MKRFTTIRTLMLIPFLLLGTIPVSAVERPFALNGTGVATLIVSESGIPVGAVPT
Ga0207643_103308891	3300025908	Miscanthus Rhizosphere	MKRFTKIRTLLLMAFLLLGTMPAFAVERAFALKGTGVATLVTD
Ga0207654_101819833	3300025911	Corn Rhizosphere	MKRFTKIRTLLPVLFLLLGTIPVSAAERPFALSGTGVATLIVNEQ
Ga0207654_108373232	3300025911	Corn Rhizosphere	MKHFMKTRALMLTLFLLLATIPASAVERPFALRGSGVATLILDGQGHLIGATPTGSGTATHLGQWTVTGNVQYTP
Ga0207695_112360742	3300025913	Corn Rhizosphere	MKRFTKIRTLMPILFLLLGTIPVSAVERPFALSGTG
Ga0207671_107621111	3300025914	Corn Rhizosphere	MKRFTTIRTLMLIPFLLLGTISVSAVERPFALNGTGVATLIVSESGIPV
Ga0207706_104418561	3300025933	Corn Rhizosphere	MKRFTKIRTLMPILFLLLGTIPVSATERPFALSGSGVATLITNAAGLPIGASR
Ga0207670_1000087514	3300025936	Switchgrass Rhizosphere	MKRFTKIHVLMITLFMLLGTIPASAVERPFAINGSGVATLITDPSGNPIGAIATGAGTATHLGQWTVTGTRGDG
Ga0207689_109379821	3300025942	Miscanthus Rhizosphere	MKRFMKIRTLMLVTFLLLGTMPALAVERPFALKGTGVAPLIIDENGHLVGATPTGSGTATHLGQWTVSGNVA
Ga0207703_104367122	3300026035	Switchgrass Rhizosphere	MKRFTKIRTLMPILFLLLGTIPTSAVERPFAINGTGVATL
Ga0207703_113335011	3300026035	Switchgrass Rhizosphere	MKHLSKLRALMLLPFLLLGTISAAAVERPFALSGTGVATI
Ga0207641_110824581	3300026088	Switchgrass Rhizosphere	MKIRTLILTLFLLLGTIPASAVERPFALNGAGVAPLITDESGHVIGATPTGSGTATHLGQWTVA
Ga0207674_106177152	3300026116	Corn Rhizosphere	MKYFTKIRTLMFVTLLLLGTIPVSAVERPFAMKGTGVATLVTDE
Ga0207675_1016078813	3300026118	Switchgrass Rhizosphere	RFTKIRTLMVITFLLLGTIPASAVERPFALKGTGVATLITDDAGHLVGAIPTGSSHCS
Ga0207698_122589742	3300026142	Corn Rhizosphere	MKYFTKIRTLMFVTLLLLGTIPVSAVERPFAMKGTGVATLVTDEAGHLSGAVPTGSGTAT
Ga0209814_101819241	3300027873	Populus Rhizosphere	MKSVTKIRTLVLTLFLLLGTIPATAVERPFALKGAGVATLITDEAGHLIGAVPTGSGTATHLGQW
Ga0209481_106131031	3300027880	Populus Rhizosphere	MKRVTKIRTLMVTLVLLLGTIPVSAVERAFALNGSGVATLITDELGRPIGAIPTGSGTATHLGRWTVAGNVQYTPDENG
Ga0207428_109808782	3300027907	Populus Rhizosphere	MKRFTKIRTVMLMAFLLLGTMPAFAVERPFALKGTGVATLIIDDAGHLIGAIPTGSGTATHLGQWTVAG
Ga0268264_106533411	3300028381	Switchgrass Rhizosphere	MKRFTKIHVLMITLFMLLGTIPASAVERPFAINGSGVATLITDPSGNPIGAVATGAGTATHLGQ
Ga0307408_1020592412	3300031548	Rhizosphere	MKRFTKIHALMLLLFMLAGTTIPVSAVERPFALSGTGVATLITNEAGMPIGAIPTGSGTA
Ga0310886_109931511	3300031562	Soil	MKRFTKIRTLMPILFLLLGTIPVSAAERPFALSGTGVATLITNEAGMPIGAIPTG
Ga0307407_105687672	3300031903	Rhizosphere	MKHFTKIRTLMLTLLLLLGTMPAFAVERPFALHGTGVATLITDPSGLPLGAVATGSGTAT
Ga0307412_108674672	3300031911	Rhizosphere	MKHFTKIRTLMLTLLLLLGTMPAFAVERPFALHGTGVATLITDPSGLPLGAVATGSGTATHLGQW
Ga0307409_1009057922	3300031995	Rhizosphere	MKHFTKIRTLMLIPFLLLATIPVSAVERPFALRGVGVATLITDEAGHLIGA
Ga0307416_1034623621	3300032002	Rhizosphere	MKPVTKIRTLVLTLFLLLGTIPATAVERPFALKGAGVATLITDEAGHLIGAVPTGSGTATHLGQWTVSGTVHYTPDSN
Ga0307414_106105021	3300032004	Rhizosphere	MKHFTKIRTLMLTLLLLLGTMPAFAVERPFALHGTGVATLITDPSGLPLGAVAT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F090218

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences