Metagenome / Metatranscriptome Family F090184

Basic Information
Family ID	F090184
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	51 residues
Representative Sequence	VTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLKLRSQLAEERRAVRDLER
Number of Associated Samples	95
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	23.15 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	86.11 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (95.370 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (26.852 % of family members)
Environment Ontology (ENVO)	Unclassified (66.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (70.370 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76 1JGI25385J37094_100673422 2JGI25382J37095_100702861 3JGI25382J37095_100719151 4JGI25388J43891_10097363 5JGI25390J43892_101244401 6JGI25386J43895_100177993 7JGI25389J43894_10547731 8Ga0066679_101627601 9Ga0066690_100479514 10Ga0066690_109063932 11Ga0070705_1010373951 12Ga0070708_1015559441 13Ga0066689_100023491 14Ga0070706_1017444431 15Ga0070706_1017444441 16Ga0070707_1007340092 17Ga0070699_1001244773 18Ga0070699_1004138971 19Ga0070697_1010645832 20Ga0070695_1004696781 21Ga0066695_104034691 22Ga0066707_100916671 23Ga0066670_104535262 24Ga0066670_106731551 25Ga0066699_101500091 26Ga0066705_108267471 27Ga0066702_100769461 28Ga0066708_100890411 29Ga0066652_1015818221 30Ga0066653_106669612 31Ga0066665_104725571 32Ga0079221_104105962 33Ga0075425_1005080502 34Ga0099827_108936142 35Ga0105057_10936051 36Ga0127458_11092572 37Ga0127482_11570542 38Ga0127486_10826491 39Ga0127455_11085072 40Ga0127464_11161351 41Ga0134070_100563922 42Ga0134082_101906232 43Ga0134086_102857542 44Ga0134063_104921951 45Ga0136847_100140352 46Ga0138112_10246232 47Ga0137380_100348741 48Ga0137381_101459723 49Ga0137379_105788471 50Ga0137379_117727231 51Ga0137366_101972342 52Ga0137368_101418201 53Ga0137385_103883632 54Ga0134039_10380951 55Ga0134032_11864862 56Ga0134058_11156523 57Ga0134054_11520411 58Ga0134043_10260092 59Ga0134052_11153071 60Ga0134052_12215111 61Ga0134041_13745691 62Ga0134053_11194211 63Ga0134060_13126382 64Ga0137395_111293231 65Ga0137419_101286993 66Ga0134077_101068812 67Ga0134076_100336611 68Ga0134087_108085062 69Ga0134081_101874942 70Ga0134075_101205432 71Ga0137420_14163931 72Ga0134089_100204083 73Ga0134089_101926492 74Ga0066655_104495231 75Ga0066655_108529602 76Ga0066655_114243991 77Ga0066667_105772021 78Ga0066662_128015181 79Ga0193720_10124921 80Ga0137417_11916842 81Ga0209641_110109351 82Ga0209640_101688181 83Ga0209342_104948281 84Ga0209027_11986411 85Ga0209265_10435112 86Ga0209239_10314774 87Ga0209761_12016992 88Ga0209155_12866211 89Ga0209470_11140902 90Ga0209470_12139421 91Ga0209801_11102171 92Ga0209266_10413131 93Ga0209266_11145052 94Ga0209158_10057451 95Ga0209377_11401452 96Ga0209690_10269754 97Ga0209690_12955671 98Ga0209378_10170365 99Ga0209160_10282065 100Ga0209056_105469701 101Ga0209156_103790441 102Ga0209648_100229936 103Ga0209729_10385041 104Ga0209076_11621532 105Ga0209074_101738032 106Ga0209180_100396381 107Ga0209283_101016083 108Ga0307473_102993562
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76 1JGI25385J37094_100673422 2JGI25382J37095_100702861 3JGI25382J37095_100719151 4JGI25388J43891_10097363 5JGI25390J43892_101244401 6JGI25389J43894_10547731 7Ga0070708_1015559441 8Ga0070707_1007340092 9Ga0070699_1004138971 10Ga0066670_104535262 11Ga0066670_106731551 12Ga0066699_101500091 13Ga0066653_106669612 14Ga0079221_104105962 15Ga0127455_11085072 16Ga0134082_101906232 17Ga0136847_100140352 18Ga0137381_101459723 19Ga0134089_100204083 20Ga0066655_108529602 21Ga0066662_128015181 22Ga0209641_110109351 23Ga0209640_101688181 24Ga0209801_11102171 25Ga0209160_10282065
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48. 1Ga0070705_1010373951 2JGI25385J37094_100673422 3JGI25382J37095_100702861 4JGI25388J43891_10097363 5Ga0070708_1015559441 6Ga0070699_1004138971 7Ga0066695_104034691 8Ga0079221_104105962 9Ga0105057_10936051 10Ga0134082_101906232 11Ga0134086_102857542 12Ga0136847_100140352 13Ga0137379_105788471 14Ga0137366_101972342 15Ga0137368_101418201 16Ga0134041_13745691 17Ga0137395_111293231 18Ga0134087_108085062 19Ga0134081_101874942 20Ga0134089_100204083 21Ga0066655_108529602 22Ga0193720_10124921 23Ga0209640_101688181 24Ga0209342_104948281 25Ga0209761_12016992 26Ga0209801_11102171 27Ga0209690_12955671 28Ga0209729_10385041 29Ga0209180_100396381 30Ga0307473_102993562
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 59.74% β-sheet: 0.00% Coil/Unstructured: 40.26%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00113	Enolase_C	62.04
PF03952	Enolase_N	25.93
PF01553	Acyltransferase	7.41
PF01256	Carb_kinase	1.85
PF03853	YjeF_N	0.93
PF02769	AIRS_C	0.93
PF05362	Lon_C	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0148	Enolase	Carbohydrate transport and metabolism [G]	87.96
COG0063	NAD(P)H-hydrate repair enzyme Nnr, NAD(P)H-hydrate dehydratase domain	Nucleotide transport and metabolism [F]	1.85
COG0351	Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	Coenzyme transport and metabolism [H]	1.85
COG0062	NAD(P)H-hydrate repair enzyme Nnr, NAD(P)H-hydrate epimerase domain	Nucleotide transport and metabolism [F]	0.93
COG0466	ATP-dependent Lon protease, bacterial type	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG1067	Predicted ATP-dependent protease	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG1750	Predicted archaeal serine protease, S18 family	General function prediction only [R]	0.93
COG3480	Predicted secreted protein YlbL, contains PDZ domain	Signal transduction mechanisms [T]	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.37 %
Unclassified	root	N/A	4.63 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.37 %
Unclassified	root	N/A	4.63 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.37 %
Unclassified	root	N/A	4.63 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	74.07 %
Unclassified	root	N/A	4.63 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	74.07 %
Unclassified	root	N/A	4.63 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	12.96 %
Unclassified	root	N/A	4.63 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	52.78 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	12.96 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	52.78 %
Unclassified	root	N/A	4.63 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	12.96 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	52.78 %
Unclassified	root	N/A	4.63 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples	11.11 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	52.78 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	1.85 %
Unclassified	root	N/A	4.63 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	52.78 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1.85 %
Unclassified	root	N/A	4.63 %
uncultured Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	11.11 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002558\|JGI25385J37094_10067342	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1153	Open in IMG/M
3300002562\|JGI25382J37095_10070286	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1306	Open in IMG/M
3300002562\|JGI25382J37095_10071915	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1287	Open in IMG/M
3300002909\|JGI25388J43891_1009736	All Organisms → cellular organisms → Bacteria	1824	Open in IMG/M
3300002911\|JGI25390J43892_10124440	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300002912\|JGI25386J43895_10017799	All Organisms → cellular organisms → Bacteria	2075	Open in IMG/M
3300002916\|JGI25389J43894_1054773	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	674	Open in IMG/M
3300005176\|Ga0066679_10162760	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	1404	Open in IMG/M
3300005177\|Ga0066690_10047951	All Organisms → cellular organisms → Bacteria	2590	Open in IMG/M
3300005177\|Ga0066690_10906393	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	562	Open in IMG/M

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.07%
Host-Associated	Host-Associated	0.93%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	0.93%
Plants	Host-Associated → Plants	0.93%
Terrestrial	Environmental → Terrestrial	98.15%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.93%
Soil	Environmental → Terrestrial → Soil	98.15%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	0.93%
Loam	Environmental → Terrestrial → Soil → Loam	12.96%
Sand	Environmental → Terrestrial → Soil → Sand	0.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	84.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	41.67%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.81%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	2.78%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.33%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.93%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	25.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	14.81%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	26.85%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.89%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002909	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm	Environmental	Open in IMG/M
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental	Open in IMG/M
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300002916	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M

Showing 1 to 10 of 95 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25385J37094_100673422	3300002558	Grasslands Soil	MSRLELAGIVAAIVLLALAFQGGEYGTLDWLQLRRQLAEERAAVRAVEVE
JGI25382J37095_100702861	3300002562	Grasslands Soil	VTRAQLAGLAAALVLAALVFQAGEYSTVDWLKLRRQLAEERRTVRDLEVELDSLERLAHALETDPAAQERAA
JGI25382J37095_100719151	3300002562	Grasslands Soil	VTRARLIAIAAAVVLAGLAFQAGEYGMLDWLKLRSQLAEERRAVR
JGI25388J43891_10097363	3300002909	Grasslands Soil	VTRARLIGIAAAVVLAALAFQAGEYGVLDWLTLRSQLAEERRAVRELERQLDSLQRLAHA
JGI25390J43892_101244401	3300002911	Grasslands Soil	VTRTRLIALAAGLVLAXLAFQAGXYSTLDWLTLGRQRVEERRAVRDLEVELDSLQR
JGI25386J43895_100177993	3300002912	Grasslands Soil	VTRARLIGIAAAVVLAGLAFQAGEYGMLDWLTLRSQLTEERRAVRELERQLDSLQRLAHALETDPVAQERAAR
JGI25389J43894_10547731	3300002916	Grasslands Soil	MTRPRIAGIAGAVVLAGLAFQAGEYGTVDWLKLQRQLTQERQ
Ga0066679_101627601	3300005176	Soil	VTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLKLRSQLAEERR
Ga0066690_100479514	3300005177	Soil	VTRARLIGIAAAVVLAALAFQAGEYGVLDWLTLRSQLAEERRAVRELERQLDSLQRLAHALET
Ga0066690_109063932	3300005177	Soil	VTRPRLIGIAAAVALAGLAFQAGEYGTLDWLKLRSQLAEERRAVRDLERQLDSLQRL
Ga0070705_1010373951	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	VTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLKLRSQLAEERRAVRDLER
Ga0070708_1015559441	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VTRARLVGLIGAATLVGLAFQAGEYGTLDWLTLRSQLVQERQAVHDLEERLDSLRR
Ga0066689_100023491	3300005447	Soil	VTRTRLIGLAAGLVLAGLAFQAGEYSTLDWLTLRRQRVEERRSVRDLEL
Ga0070706_1017444431	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLKLRSQLAEERRAVRDLERQLDSLQRLARELETDP
Ga0070706_1017444441	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VTRPRLIGIAAAVVLAGLAFQAGEYATLDWLKLRSQLAEERRAVRDLERQLDSLQRLARELETDP
Ga0070707_1007340092	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VTRARLAGLAAAALLAGAAFQAGEYSTLDWLKLRGRLARERQAVRELEVELDSLA
Ga0070699_1001244773	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VTRSRLIAIAAAVVLAGLAFQAGEYGMLDWLKLRSQLAEERRAVRELEHQLDSLQRLAHALE
Ga0070699_1004138971	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MIVLAWAIVFAGEYSTFDWLKLRQELALERRAVRDLHVALDSLGRLAHDLETSPAAQERAARE
Ga0070697_1010645832	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLKLRSQLAEERRAVRDLERQLDS
Ga0070695_1004696781	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	VTRARLVGLIGAATLVGLAFQAGEYGTLDWLTLRSQLVQERRAVHDLEERLD
Ga0066695_104034691	3300005553	Soil	VTWPRLAGVVAAALLASVAFQAGEYSTLDWLELRGRLARERQAVRDLEVQLDSLARRAR
Ga0066707_100916671	3300005556	Soil	VTRSRLAGIAGAVVLAGLAFQAGEYGTVDWLKLRRQLIEERRA
Ga0066670_104535262	3300005560	Soil	VTWPRLAGVVAAALLASVAFQAGEYSTLDWLELRG
Ga0066670_106731551	3300005560	Soil	VTRTRLIALAAGLVLAGLAFQAGEYSTLDWLTLRR
Ga0066699_101500091	3300005561	Soil	VTRTRLIGLAAGVVLAGLAFQAGEYSTLDWLTLRRQRAEERRTVRDLELELDSLQRLAHGLEEDPA
Ga0066705_108267471	3300005569	Soil	VTRPRLAAIAGVVVLAGLAFQAGEYGTVDWLKLRRQLIQERRAVR
Ga0066702_100769461	3300005575	Soil	VTRPRLAGIAGAVVLAGLAFQAGEYGTVDWLKLRRQLIQE
Ga0066708_100890411	3300005576	Soil	VTRARLAGLAAAALLAGVAFQAGEYGTLDWLKLRGRLARERQAV
Ga0066652_1015818221	3300006046	Soil	MTMTRTRIAGIAGAVVLAGLAFQAGEYGTVDWLKLRRQL
Ga0066653_106669612	3300006791	Soil	VTRAQLAGLAAALVLAALAFQAGEYSTVDWLTLRRQLAEERR
Ga0066665_104725571	3300006796	Soil	VTRARLAGLAAAALLAGVAFQAGEYSTFDWLKLRGRLARERQALLELEVELDSLA
Ga0079221_104105962	3300006804	Agricultural Soil	VTRARLIGIAGAVALAGLAFQAGEYGMLDWLKLRRQLAEERRAVRELEVRLDSLERLARALETDPVAQ
Ga0075425_1005080502	3300006854	Populus Rhizosphere	VTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLKLRSQ
Ga0099827_108936142	3300009090	Vadose Zone Soil	VTRARIAGIAGAVVLAGLAFQAGEYGTVDWLKLHRQLAQER
Ga0105057_10936051	3300009813	Groundwater Sand	VTRARIAGLVAAVVLAALAFQAGEYGTLDWLTLRRQLTEE
Ga0127458_11092572	3300010112	Grasslands Soil	VTRARLIGIAAAVVLAGLAFQAGEYGMLDWLKLRSQLAAERRAVR
Ga0127482_11570542	3300010126	Grasslands Soil	VTRPRLAGIAGAVVLAGLAFQAGEYGTVDWLKLRRQLIQER
Ga0127486_10826491	3300010128	Grasslands Soil	VTRARLIGIAAAVVLAGLAFQAGEYGTPDWLKLRNQLAEERRAV
Ga0127455_11085072	3300010132	Grasslands Soil	VTRPRLIGIAAAVALAGLAFQAGEYGTLDWLKLRSQ
Ga0127464_11161351	3300010139	Grasslands Soil	VTRPRLIGIAAAVVLAGLAFQAGEYGVLDWLTLRSQLAEERRAVRELERQLDS
Ga0134070_100563922	3300010301	Grasslands Soil	VTRARLAGLAAAALLAGVAFQAGEYGTLDWLKLRGRLARERQAVLELEVELDSL
Ga0134082_101906232	3300010303	Grasslands Soil	VTRARLTGLAAAALLAGVAFQAGEYGTLDWLKLRGRLARERQAVRELEVDLDSLAQRGHALETDPVAQERA
Ga0134086_102857542	3300010323	Grasslands Soil	MSRRELAGIVAVIVLLGLAFQGGEYGTLDWLQLRRQLAEERAALRALEVDLDSL
Ga0134063_104921951	3300010335	Grasslands Soil	VTRARLAGLAAAALLAGVAFQAGEYGTLDWLKLRGRLARERQAVLELEVELDSLAQR
Ga0136847_100140352	3300010391	Freshwater Sediment	VTPARLAGLGGGAVLVLVAILAGEYSTLDWLKLRRQLG
Ga0138112_10246232	3300010905	Grasslands Soil	MTRTRIAGIAGAVVLAGLAFQAGEYGTVDWLKLRRQLIQERRAVRDLEV
Ga0137380_100348741	3300012206	Vadose Zone Soil	MSRRELAGIVAVIVLLGLAFQGGEYGTLDWLQLRRQLADERAAVR
Ga0137381_101459723	3300012207	Vadose Zone Soil	MSRRELAGIVAVIVLLGLAFQGGEYGTLDWLQLRRQL
Ga0137379_105788471	3300012209	Vadose Zone Soil	VTRPRLAGIAGAVVLAGLAFQAGEYGTVDWLKLRRQLIEERRAVRSLEVELDSLARLAR
Ga0137379_117727231	3300012209	Vadose Zone Soil	VTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLKLRSQLAEER
Ga0137366_101972342	3300012354	Vadose Zone Soil	VTRARLVGIAAAAVLAALAFQAGEYGTLDWLKLRRQLADERRGVQDLEARLDSLERLARA
Ga0137368_101418201	3300012358	Vadose Zone Soil	VTRAQLAGLIAAVVLAALAFQAGEYSTLDWLTLRRQLAEERQAVSDLEVQLDSLERLARALENDPAAQER
Ga0137385_103883632	3300012359	Vadose Zone Soil	VTRTRLFGIAAALVLAGLAFQAGEYGTLDWLKLRSQLAEERRAVRDL
Ga0134039_10380951	3300012374	Grasslands Soil	MTRTRIAGIAGAVVLAGLAFQAGEYGTVDWLKLRRQLIQERRAVR
Ga0134032_11864862	3300012376	Grasslands Soil	MTRARLIGIAAAVVLAGLAFQAGEYGLLDWLTLRNQLAEER
Ga0134058_11156523	3300012379	Grasslands Soil	VTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLKLRS
Ga0134054_11520411	3300012390	Grasslands Soil	VTRARLIGIAAAVVLAGLAFQAGEYGMLDWLKLRSQLAEER
Ga0134043_10260092	3300012392	Grasslands Soil	VTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLKLRSQLA
Ga0134052_11153071	3300012393	Grasslands Soil	VTRARLIGIAAAVVLAGLAFQAGEYGMLDWLKLRSQLAEERRAVRDLERQLDSLQR
Ga0134052_12215111	3300012393	Grasslands Soil	VTRAQLAGLAAALVLAALAFQAGEYSTVDWLTLRRQLAE
Ga0134041_13745691	3300012405	Grasslands Soil	MIGIAAGVVLAGLAFQAGEYSTLDWLTLRRQRAEEHRTVRDLELELDSLQRLARGLEQDP
Ga0134053_11194211	3300012406	Grasslands Soil	VTRARLIGIAAAVVLAGLAFQAGEYGMLDWLTLRSQLAEERRAVRELE
Ga0134060_13126382	3300012410	Grasslands Soil	VTRPRLIGIAAAVVLAGLAFQAGEYGTPDWLKLRNQLA
Ga0137395_111293231	3300012917	Vadose Zone Soil	VTRTRLIALAAGLVLAGLAFQAGEYSTLDWLTLRRQRVEERRAVRDLELE
Ga0137419_101286993	3300012925	Vadose Zone Soil	VTRARLIGLAAAVVLAGLAFQAGEYGMLDWLKLRSQLAEERRAVR
Ga0134077_101068812	3300012972	Grasslands Soil	VTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLKLRSQLAEERRAVRDLERQLDSLQRL
Ga0134076_100336611	3300012976	Grasslands Soil	VTRPRLIGIAAAVALAGLAFQAGEYGTLDWLKLRSQLAEERRAVRDLERQLDSLQR
Ga0134087_108085062	3300012977	Grasslands Soil	MTRPRIAGIAGSVVLAGLAFQAGEYGTVDWLKLQRQLTQERQAVRDLEAALD
Ga0134081_101874942	3300014150	Grasslands Soil	VTRARLAGLAAAALLAGVAFQAGEYSTFDWLKLRGRLARERQALLELEVELDSLAQRGHALETDPVAQ
Ga0134075_101205432	3300014154	Grasslands Soil	VTRARLAGLAAAALLAGVAFQAGEYGTLDWLKLRGRLARERQAVRELEVELDSLARRARALETDPVAQ
Ga0137420_14163931	3300015054	Vadose Zone Soil	VTRARLIAVAAAVVLAGLAFQAGEYGMLDWLKLRSQLAEERRAVRELERQLDSLQRLAHALQRLAHALE
Ga0134089_100204083	3300015358	Grasslands Soil	MTRTRIAGIAGAVVLAGLAFQAGEYGTVDWLKLRRQLADERRAVRALEVELD
Ga0134089_101926492	3300015358	Grasslands Soil	VTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLKLRRQLAEERRAVRELEVELDSLARLARA
Ga0066655_104495231	3300018431	Grasslands Soil	VTWPRLAGVVAAALLASVAFQAGEYSTLDWLELQGRLARERQAVRDLEVQLDSLARRAEH
Ga0066655_108529602	3300018431	Grasslands Soil	VTRARLIGIAAAVVHAGLAFHAGKSGVLAWLKLPSQLAEEGRVVQEIERTIESL
Ga0066655_114243991	3300018431	Grasslands Soil	VTRTRLIALAAGLVLAGLAFQAGEYSTLDWPTLRRQRVEERRAVRDLEPEP
Ga0066667_105772021	3300018433	Grasslands Soil	VTRPRLAAIAGVVVLAGLAFQAGEYGTVDWLKLRRQ
Ga0066662_128015181	3300018468	Grasslands Soil	MIGIAAGVVLAGLAFQAGEYSTLDWLTLRRQRAEEHRTVRD
Ga0193720_10124921	3300019868	Soil	VTRARLIGLVAAVVLAGLAFQAGEYGTLDWLTLRHQLAEERRAVRD
Ga0137417_11916842	3300024330	Vadose Zone Soil	VTRARLIAVAAAVVLAGLAFQAGEYGMLDWLKLRSQLAEERRAVRELERQLDSLQRLAHALETDPTAQERAA
Ga0209641_110109351	3300025322	Soil	VTRARIAALVGAVVLAALAFQAGEYGTLDWLTLRRQVAAERQA
Ga0209640_101688181	3300025324	Soil	VSATRLAAVLGSLALLALAAFGGEYGTRDWLQLRRQLAEERRAVRGLEAELDSLARLARALE
Ga0209342_104948281	3300025326	Soil	VTRARIAALVGAVVLAALAFQAGEYGTLDWLTLRRQVAAERQAVRALEIEVHSLAR
Ga0209027_11986411	3300026300	Grasslands Soil	VTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLKLRSQLAEERRAVRDLERQLDSLQRLARELET
Ga0209265_10435112	3300026308	Soil	VTRTRLIALAAGLVLAGLAFQAGEYSTLDWLTLRRQRVEERRAVRDLELELDSLQRLARGLEQD
Ga0209239_10314774	3300026310	Grasslands Soil	MTRPRIAGIAGAVVLAGLAFQAGEYGTVDWLKLQRQLTQERQAVRDLEAA
Ga0209761_12016992	3300026313	Grasslands Soil	VTRPRIAGIAGAVVLAGLAFQAGEYGTVDWLKLHRQLAQERQAVRDLEVALDSLDRL
Ga0209155_12866211	3300026316	Soil	VTRARLIGIAAAVVLAGLAFQAGEYGTPDWLKLRNQLAEERRAVRELERQLDSLQRRARA
Ga0209470_11140902	3300026324	Soil	VTRSRLAGIAGAVVLAGLAFQAGEYGTVDWLKLRGQLIQERRAV
Ga0209470_12139421	3300026324	Soil	VTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLKLRSQLAEERRAVRDLERQLDSLQ
Ga0209801_11102171	3300026326	Soil	VTRARLAGLVAAAVLAALAFQAGEYSTLDWLKLRRQLAEERRTVRALEVE
Ga0209266_10413131	3300026327	Soil	MTRPRIAGIAGAVVLAGLAFQAGEYGTVDWLKLQRQLTQERQAVR
Ga0209266_11145052	3300026327	Soil	MTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLTLRSQLAEARRSVRDLERQLDSLQRLA
Ga0209158_10057451	3300026333	Soil	MSRLELAGIVAAIVLLGLAFQGGEYGTLDWLQLRRQ
Ga0209377_11401452	3300026334	Soil	VTRPRLIGIAAAVALAGLAFQAGEYGTLDWLKLRSQLAEERRAVRDLERQLDS
Ga0209690_10269754	3300026524	Soil	VTRTRLIGLGAGLVLAGLAFQAGEYSTLDWLTLRRQRTEERRAVRDLEVELDS
Ga0209690_12955671	3300026524	Soil	VTRARIVGIIGAAVLVGLAFQAGEYGTLDWLKLRRQLTEERRAVRDLEERLDSLRR
Ga0209378_10170365	3300026528	Soil	VTRARLIGIAAAVVLAGLAFQAGEYGVLDWLTLRSQLAEE
Ga0209160_10282065	3300026532	Soil	VTRARIVGIIGAAVLVGLAFQAGEYGTLDWLKLRRQLTEERRA
Ga0209056_105469701	3300026538	Soil	MSRRELAGIVATIVGLALAFQGGEYGTLDWLQLRRQLAEERAAVRAVEVELDSLGRA
Ga0209156_103790441	3300026547	Soil	VTRARLAGLAAAALLAGVAFQAGEYSTFDWLKLRGRLARERQALLELEV
Ga0209648_100229936	3300026551	Grasslands Soil	VTRARLIAVAAAVVLAGLAFQAGEYGTLDWLKLRSQLAEERRAVRDLERQLDSLQR
Ga0209729_10385041	3300027061	Forest Soil	VTRPRLIALAAAVTLAGLAFQAGEYSTLDWLTLRRQRAEERRSVRDLELALDSLQRL
Ga0209076_11621532	3300027643	Vadose Zone Soil	VTRARLIAVAAAVVLAGLAFQAGEYGMLDWLKLRSQL
Ga0209074_101738032	3300027787	Agricultural Soil	VTRARLVGLIGAATLVGLAFQAGEYGTLDWLTLRSQLVQERQAVHD
Ga0209180_100396381	3300027846	Vadose Zone Soil	VTRARLIGIAAALALAGLAFAAGEYSTLDWLKLSRQLAEEQQAVRE
Ga0209283_101016083	3300027875	Vadose Zone Soil	VTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLKLRSQLAEERRAVRELERQ
Ga0307473_102993562	3300031820	Hardwood Forest Soil	VTRSRLIAIAAAVVLAGLAFQAGEYGMLDWLKLRSQLAQERRAVRELEHQLDSL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090184

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences