Metagenome / Metatranscriptome Family F090107

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090107
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	42 residues
Representative Sequence	MTSLKLLVVEDDLASLELMVEVFTSLKAEVHPVSDSEKA
Number of Associated Samples	90
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	94.44 %
% of genes near scaffold ends (potentially truncated)	96.30 %
% of genes from short scaffolds (< 2000 bps)	87.04 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (55.556 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (26.852 % of family members)
Environment Ontology (ENVO)	Unclassified (31.481 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.667 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 19.40% β-sheet: 0.00% Coil/Unstructured: 80.60%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF14520	HHH_5	2.78
PF01979	Amidohydro_1	2.78
PF10531	SLBB	2.78
PF00990	GGDEF	2.78
PF00072	Response_reg	2.78
PF13242	Hydrolase_like	1.85
PF02518	HATPase_c	1.85
PF05231	MASE1	1.85
PF03190	Thioredox_DsbH	0.93
PF00300	His_Phos_1	0.93
PF08448	PAS_4	0.93
PF04371	PAD_porph	0.93
PF09286	Pro-kuma_activ	0.93
PF00512	HisKA	0.93
PF00753	Lactamase_B	0.93
PF01266	DAO	0.93
PF07311	Dodecin	0.93
PF13188	PAS_8	0.93
PF03466	LysR_substrate	0.93
PF00085	Thioredoxin	0.93
PF13414	TPR_11	0.93
PF01554	MatE	0.93
PF16656	Pur_ac_phosph_N	0.93
PF06537	DHOR	0.93
PF00230	MIP	0.93
PF07238	PilZ	0.93
PF15780	ASH	0.93
PF07992	Pyr_redox_2	0.93
PF13545	HTH_Crp_2	0.93
PF03062	MBOAT	0.93
PF08013	GatZ_KbaZ-like	0.93
PF00293	NUDIX	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0642	Signal transduction histidine kinase	Signal transduction mechanisms [T]	1.85
COG3447	Integral membrane sensor domain MASE1	Signal transduction mechanisms [T]	1.85
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	1.85
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	0.93
COG1331	Uncharacterized conserved protein YyaL, SSP411 family, contains thoiredoxin and six-hairpin glycosidase-like domains	General function prediction only [R]	0.93
COG2957	Agmatine/peptidylarginine deiminase	Amino acid transport and metabolism [E]	0.93
COG3360	Flavin-binding protein dodecin	General function prediction only [R]	0.93
COG3488	Uncharacterized conserved protein with two CxxC motifs, DUF1111 family	General function prediction only [R]	0.93
COG4573	Tagatose-1,6-bisphosphate aldolase non-catalytic subunit AgaZ/GatZ	Carbohydrate transport and metabolism [G]	0.93
COG4934	Serine protease, subtilase family	Posttranslational modification, protein turnover, chaperones [O]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.56 %
Unclassified	root	N/A	44.44 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.56 %
Unclassified	root	N/A	44.44 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.56 %
Unclassified	root	N/A	44.44 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.44 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	37.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.85 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.44 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	15.74 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	6.48 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.44 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.74 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	6.48 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.44 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.74 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6.48 %
Synechococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.44 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.74 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	4.63 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	0.93 %
Acaryochloridaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Acaryochloridaceae	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.44 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.74 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2.78 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.93 %
Acaryochloris	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Acaryochloridaceae → Acaryochloris	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.44 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.74 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2.78 %
unclassified Acaryochloris	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Acaryochloridaceae → Acaryochloris → unclassified Acaryochloris	0.93 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.44 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.74 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2.78 %
Acaryochloris sp. CCMEE 5410	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Acaryochloridaceae → Acaryochloris → unclassified Acaryochloris → Acaryochloris sp. CCMEE 5410	0.93 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001546\|JGI12659J15293_10136453	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Acaryochloridaceae → Acaryochloris → unclassified Acaryochloris → Acaryochloris sp. CCMEE 5410	535	Open in IMG/M
3300001593\|JGI12635J15846_10568903	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	662	Open in IMG/M
3300001661\|JGI12053J15887_10247107	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	888	Open in IMG/M
3300002245\|JGIcombinedJ26739_100227970	All Organisms → cellular organisms → Bacteria	1754	Open in IMG/M
3300002568\|C688J35102_119608149	Not Available	730	Open in IMG/M
3300003321\|soilH1_10400887	All Organisms → cellular organisms → Bacteria → Acidobacteria	1367	Open in IMG/M
3300004104\|Ga0058891_1410090	Not Available	577	Open in IMG/M
3300005293\|Ga0065715_10335530	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	976	Open in IMG/M
3300005435\|Ga0070714_100093606	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2635	Open in IMG/M
3300005534\|Ga0070735_10382127	Not Available	844	Open in IMG/M
3300005536\|Ga0070697_100411540	All Organisms → cellular organisms → Bacteria → Acidobacteria	1174	Open in IMG/M
3300005538\|Ga0070731_10597109	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300005560\|Ga0066670_10154878	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1342	Open in IMG/M
3300005586\|Ga0066691_10375294	All Organisms → cellular organisms → Bacteria → Acidobacteria	843	Open in IMG/M
3300005719\|Ga0068861_100438672	All Organisms → cellular organisms → Bacteria	1167	Open in IMG/M
3300006059\|Ga0075017_100639914	Not Available	815	Open in IMG/M
3300006800\|Ga0066660_11153571	Not Available	610	Open in IMG/M
3300007258\|Ga0099793_10574377	Not Available	564	Open in IMG/M
3300009088\|Ga0099830_11255038	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300009089\|Ga0099828_10091152	All Organisms → cellular organisms → Bacteria → Acidobacteria	2620	Open in IMG/M
3300009098\|Ga0105245_12939022	Not Available	528	Open in IMG/M
3300009143\|Ga0099792_10198676	Not Available	1139	Open in IMG/M
3300009143\|Ga0099792_10550149	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	729	Open in IMG/M
3300010371\|Ga0134125_10669972	All Organisms → cellular organisms → Bacteria	1145	Open in IMG/M
3300010375\|Ga0105239_11971444	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300010398\|Ga0126383_12782928	Not Available	571	Open in IMG/M
3300011120\|Ga0150983_15422077	Not Available	1130	Open in IMG/M
3300011269\|Ga0137392_10128092	Not Available	2032	Open in IMG/M
3300011269\|Ga0137392_10229553	All Organisms → cellular organisms → Bacteria → Acidobacteria	1524	Open in IMG/M
3300011269\|Ga0137392_10496238	All Organisms → cellular organisms → Bacteria	1014	Open in IMG/M
3300011270\|Ga0137391_11003901	Not Available	679	Open in IMG/M
3300012096\|Ga0137389_10025752	All Organisms → cellular organisms → Bacteria → Acidobacteria	4202	Open in IMG/M
3300012096\|Ga0137389_11527127	Not Available	564	Open in IMG/M
3300012199\|Ga0137383_10746801	All Organisms → cellular organisms → Bacteria → Acidobacteria	715	Open in IMG/M
3300012208\|Ga0137376_10425265	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1153	Open in IMG/M
3300012917\|Ga0137395_10978594	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	607	Open in IMG/M
3300012917\|Ga0137395_11004358	Not Available	597	Open in IMG/M
3300012917\|Ga0137395_11228772	Not Available	522	Open in IMG/M
3300012923\|Ga0137359_11145573	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	664	Open in IMG/M
3300012924\|Ga0137413_11175353	Not Available	610	Open in IMG/M
3300012927\|Ga0137416_11211238	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	680	Open in IMG/M
3300012927\|Ga0137416_11341225	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	647	Open in IMG/M
3300012927\|Ga0137416_11448716	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	623	Open in IMG/M
3300012929\|Ga0137404_10930305	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300012929\|Ga0137404_10954313	Not Available	783	Open in IMG/M
3300012930\|Ga0137407_10110732	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2369	Open in IMG/M
3300014495\|Ga0182015_10030295	All Organisms → cellular organisms → Bacteria → Acidobacteria	4193	Open in IMG/M
3300014501\|Ga0182024_12277927	Not Available	590	Open in IMG/M
3300015242\|Ga0137412_10052849	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3312	Open in IMG/M
3300015264\|Ga0137403_10362796	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1334	Open in IMG/M
3300017823\|Ga0187818_10090215	Not Available	1324	Open in IMG/M
3300017936\|Ga0187821_10176503	Not Available	815	Open in IMG/M
3300018030\|Ga0187869_10020078	All Organisms → cellular organisms → Bacteria → Acidobacteria	3828	Open in IMG/M
3300018062\|Ga0187784_10569385	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	911	Open in IMG/M
3300020006\|Ga0193735_1092480	Not Available	852	Open in IMG/M
3300020579\|Ga0210407_10113229	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2070	Open in IMG/M
3300020580\|Ga0210403_11061683	Not Available	631	Open in IMG/M
3300020580\|Ga0210403_11103144	Not Available	616	Open in IMG/M
3300020580\|Ga0210403_11471853	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	513	Open in IMG/M
3300021088\|Ga0210404_10611688	Not Available	619	Open in IMG/M
3300021171\|Ga0210405_10211983	All Organisms → cellular organisms → Bacteria → Acidobacteria	1535	Open in IMG/M
3300021178\|Ga0210408_10689384	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300021181\|Ga0210388_10825570	Not Available	802	Open in IMG/M
3300021401\|Ga0210393_11145575	Not Available	627	Open in IMG/M
3300021401\|Ga0210393_11463152	All Organisms → cellular organisms → Bacteria → Acidobacteria	544	Open in IMG/M
3300021432\|Ga0210384_10009175	All Organisms → cellular organisms → Bacteria	10237	Open in IMG/M
3300021433\|Ga0210391_10453755	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1006	Open in IMG/M
3300021478\|Ga0210402_11967449	All Organisms → cellular organisms → Bacteria → Terrabacteria group	510	Open in IMG/M
3300021479\|Ga0210410_10353175	All Organisms → cellular organisms → Bacteria → Acidobacteria	1318	Open in IMG/M
3300021559\|Ga0210409_11458606	Not Available	560	Open in IMG/M
3300022557\|Ga0212123_10455273	Not Available	842	Open in IMG/M
3300024288\|Ga0179589_10151245	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	990	Open in IMG/M
3300025912\|Ga0207707_11369924	Not Available	565	Open in IMG/M
3300025916\|Ga0207663_11130521	Not Available	630	Open in IMG/M
3300025939\|Ga0207665_11482607	Not Available	539	Open in IMG/M
3300026329\|Ga0209375_1301085	Not Available	524	Open in IMG/M
3300027590\|Ga0209116_1033964	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1080	Open in IMG/M
3300027641\|Ga0208827_1080451	All Organisms → cellular organisms → Bacteria	1009	Open in IMG/M
3300027667\|Ga0209009_1104009	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300027829\|Ga0209773_10289135	All Organisms → cellular organisms → Bacteria → Acidobacteria	684	Open in IMG/M
3300027855\|Ga0209693_10321163	Not Available	753	Open in IMG/M
3300027903\|Ga0209488_10631406	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	774	Open in IMG/M
3300028047\|Ga0209526_10700901	Not Available	638	Open in IMG/M
3300028536\|Ga0137415_10370323	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1236	Open in IMG/M
3300028906\|Ga0308309_11579642	Not Available	559	Open in IMG/M
3300029910\|Ga0311369_10086606	All Organisms → cellular organisms → Bacteria	3215	Open in IMG/M
3300029944\|Ga0311352_10413737	Not Available	1102	Open in IMG/M
3300029944\|Ga0311352_11173121	Not Available	584	Open in IMG/M
3300029951\|Ga0311371_11673082	Not Available	696	Open in IMG/M
3300030057\|Ga0302176_10073200	All Organisms → cellular organisms → Bacteria → Acidobacteria	1326	Open in IMG/M
3300030687\|Ga0302309_10462588	All Organisms → cellular organisms → Bacteria → Acidobacteria	609	Open in IMG/M
3300030991\|Ga0073994_12160334	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	948	Open in IMG/M
3300031236\|Ga0302324_100107619	All Organisms → cellular organisms → Bacteria → Acidobacteria	4699	Open in IMG/M
3300031474\|Ga0170818_110806106	Not Available	1278	Open in IMG/M
3300031715\|Ga0307476_10065193	All Organisms → cellular organisms → Bacteria	2512	Open in IMG/M
3300031715\|Ga0307476_10278016	All Organisms → cellular organisms → Bacteria	1226	Open in IMG/M
3300031715\|Ga0307476_10548156	All Organisms → cellular organisms → Bacteria → Acidobacteria	857	Open in IMG/M
3300031715\|Ga0307476_10968298	Not Available	627	Open in IMG/M
3300031715\|Ga0307476_11408580	Not Available	507	Open in IMG/M
3300031718\|Ga0307474_10607615	All Organisms → cellular organisms → Bacteria	862	Open in IMG/M
3300031754\|Ga0307475_11033942	Not Available	645	Open in IMG/M
3300031823\|Ga0307478_10291884	Not Available	1334	Open in IMG/M
3300031954\|Ga0306926_10945906	Not Available	1029	Open in IMG/M
3300032180\|Ga0307471_101886497	Not Available	747	Open in IMG/M
3300032180\|Ga0307471_104087142	Not Available	515	Open in IMG/M
3300032783\|Ga0335079_11988104	Not Available	560	Open in IMG/M
3300033158\|Ga0335077_10260440	Not Available	1917	Open in IMG/M
3300033887\|Ga0334790_007848	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6053	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.30%
Host-Associated	Host-Associated	3.70%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.74%
Aquatic	Environmental → Aquatic	5.56%
Plants	Host-Associated → Plants	3.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.33%
Peat	Environmental → Terrestrial → Peat	7.41%
Freshwater	Environmental → Aquatic → Freshwater	3.70%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.85%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.93%
Sediment	Environmental → Aquatic → Sediment	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.96%
Loam	Environmental → Terrestrial → Soil → Loam	15.74%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.41%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.63%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.85%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.41%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.19%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.41%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.63%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.70%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.78%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.85%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.85%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.85%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	26.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	9.26%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.33%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	6.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.70%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.78%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.85%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.85%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.93%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.93%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.93%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.93%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.93%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.93%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.93%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300004104	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF218 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030057	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1	Environmental	Open in IMG/M
3300030687	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_1	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033887	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12659J15293_101364531	3300001546	Forest Soil	MSSLKLLVVEDDLPSLELMDEVFTSLKAEVRPVSDGQTAADLINRVK
JGI12635J15846_105689033	3300001593	Forest Soil	MAALKLLVVEDDAASLELMAELLQQFKAEVRPIIDSQEA
JGI12053J15887_102471072	3300001661	Forest Soil	MTPLRLLVVEDDLASLELMVEVFTSLKAEVNPVSDSKKAVDMINQE
JGIcombinedJ26739_1002279704	3300002245	Forest Soil	MTPLRLLIVEDDLASLELMTEVFTSLKAEVRPVSDS
C688J35102_1196081492	3300002568	Soil	MLSLKLLIVEDDAASLELMTEVLGSLEAEVRPISDSQKAA
soilH1_104008871	3300003321	Sugarcane Root And Bulk Soil	MNPLKLLIVEDDTPSLELMAEVFSNLQANVYAVGDSKKAADLVSM
Ga0058891_14100902	3300004104	Forest Soil	MQPLKLLVVEDNIPCLELMTEVFMSLKAEVRPISDSEKAVAVVNQ
Ga0065715_103355302	3300005293	Miscanthus Rhizosphere	MASLKLLIVEDDIANLELMAEVFTSLKAEVCPVSDSEIAADM
Ga0070714_1000936061	3300005435	Agricultural Soil	MLSLKLLVVEDDPSSLELMTEVLRSLEAEVRPFSDSQKAAVLVHQE
Ga0070735_103821272	3300005534	Surface Soil	MASLKLLVVEDDIASLELMTEVFKSLEAEVRPISDSNNAVKIVSQEKFDG
Ga0070697_1004115401	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MAFLKLLVVEDHIPSLELMAEVFTSLEAEVWPLSDSREAASLI
Ga0070731_105971091	3300005538	Surface Soil	MGSLKLLVVEDDLPSLELMEEVFTSLQAEVRPVNNSETAAVLVGKEKF
Ga0066670_101548782	3300005560	Soil	MAPLKLLIVEDDVASLELMAEVFTSLKAEVRPVSDSRE
Ga0066691_103752942	3300005586	Soil	MIPLKLLVVEDDPASLELMTEVFQSLKAHVRPVITGRTCA
Ga0068861_1004386722	3300005719	Switchgrass Rhizosphere	MDNLNLLLVEDDIPSLEMMTEVFGSLNAEVRPVSDSERAAAMV
Ga0075017_1006399141	3300006059	Watersheds	MASLKLLVVEDDLPCLELMTEVFTSLQAEVRPVSDSEQAAT
Ga0066660_111535711	3300006800	Soil	MTPLKLLVVEDDTASLELMTEVFTYLKAEVRPVSDSETAAGMV
Ga0099793_105743771	3300007258	Vadose Zone Soil	MASLKLLIVEDDIASLDLMAEVFTYLQAEVRPVSDS
Ga0099830_112550382	3300009088	Vadose Zone Soil	KDEDGCMQPLKLLTVEDNLASLELMTDVFTSLKAEVRPISDSEQALRVSGTP*
Ga0099828_100911523	3300009089	Vadose Zone Soil	MQPLKLLTVEDNLARLELMTEVFTSLKAEVRPISDSEQALRVSGTP*
Ga0105245_129390222	3300009098	Miscanthus Rhizosphere	MGGVMESLKLLVVEDDLPSLELMTEVFQSLKADVRPIADSSKAAL
Ga0099792_101986762	3300009143	Vadose Zone Soil	MATLKLLVVEDDLASLELMTEVFTSLKAEVHPVSDSEKAADMVNREKFDG
Ga0099792_105501492	3300009143	Vadose Zone Soil	MLALKLLVVEDDAASLELMTEVFRSLKAEVLPVSDSEEAARRVNQEKFD
Ga0134125_106699724	3300010371	Terrestrial Soil	MGSLKLLVVEDDMPSLELMEEVFTSLQAEVRPVNNSETAAALVG
Ga0105239_119714442	3300010375	Corn Rhizosphere	MGSLKLLVVEDDMPSLELMEEVFTSLQAEVRPVNNSETAAALVGKEGEGF
Ga0126383_127829282	3300010398	Tropical Forest Soil	MAALKLLVVEDDIPCLELMTEVFTSLQADVKPVSD
Ga0150983_154220773	3300011120	Forest Soil	MPPLKLLVVEDNIPCLELMTEVFMSLKAEVRPISDSEKAVAVVNQEKF
Ga0137392_101280922	3300011269	Vadose Zone Soil	MVELKLLVVEDDAASLELMTEVFRSLKADVRPVSDSQEAAL
Ga0137392_102295531	3300011269	Vadose Zone Soil	MASLKLLVVEDHIPSLELMAEVFTSLEAEVWPLSDSPEAASL
Ga0137392_104962382	3300011269	Vadose Zone Soil	MQPLKLLTVEDNLASLELMTDVFTSLKAEVRPISDSEQALRVSGTP*
Ga0137391_110039012	3300011270	Vadose Zone Soil	MTPLKLLVVEDDAASLELMTEVFRYLKAEVRPVSDSEKAV
Ga0137389_100257528	3300012096	Vadose Zone Soil	MASLKLLVVEDHIPSLELMAEVFVSLEAEVWPLSDSREAASLIDKEKFDG
Ga0137389_115271271	3300012096	Vadose Zone Soil	MASLKLLVVEDHIPSLELMAEVFTSLEAEVWPLSDS
Ga0137383_107468011	3300012199	Vadose Zone Soil	MTPLKLLVVEDDLASLELTVEVFTSLKAEIHPVSDSEKA
Ga0137376_104252652	3300012208	Vadose Zone Soil	MGLEEDRRMTSLKLLVVEDDLASLELMVEVFTSLKAEVHPV
Ga0137395_109785942	3300012917	Vadose Zone Soil	MASLKLLVVEDDLASLELMVEVFTSLKAEVHPVSDS
Ga0137395_110043581	3300012917	Vadose Zone Soil	MTSLKLLVVEDDLASLELMVEVFTSLKAEVHPVSDSEKA
Ga0137395_112287722	3300012917	Vadose Zone Soil	MTALKLLVVEDDAASLELMNEVFTSLKAEVRPVNDSEKAVGIVNQEKFD
Ga0137359_111455732	3300012923	Vadose Zone Soil	MPSLKLLIVEDDIASLELMAEVFRSLTAEVHPVSDSVRGA
Ga0137413_111753531	3300012924	Vadose Zone Soil	MALVKLLLVEDDIASLELMTEVFSALEAEVHPTSDSENAAR
Ga0137416_112112381	3300012927	Vadose Zone Soil	MASLKLLVVEDDIANLELMTEVFKTLEAEVRPISDSE
Ga0137416_113412252	3300012927	Vadose Zone Soil	LGLEEDRLVTPLRLLVVEDDLASLELMVEVFTSLKAEVHP
Ga0137416_114487162	3300012927	Vadose Zone Soil	MQSLKLLVVEDDIANLELMTEVFRSLAAKVCSISDSEKAADLVN
Ga0137404_109303051	3300012929	Vadose Zone Soil	MATLKLLVVEDDLASLELMAEVFTSLKAEVHPVSDSEKAADMVTREKFD
Ga0137404_109543131	3300012929	Vadose Zone Soil	MASLKLLVVEDHIPSLELMAEVFTSLEAEVWPLSDSREA
Ga0137407_101107324	3300012930	Vadose Zone Soil	MQSLKLLVVEDDVASLELMTEVFRSLAAEVCSTSDSEKAADLVNR
Ga0182015_100302954	3300014495	Palsa	MVSLKLLIVEDDIASLELMTEVFTSLEAEVSPVSDSQK
Ga0182024_122779272	3300014501	Permafrost	MEALKLLVVEDDAVTLELMTEVFKSLNAEVRPMRDSE
Ga0137412_100528495	3300015242	Vadose Zone Soil	MALVKLLLVEDDIASLELMTEVFSALEAEVHPTSDSENAAKIVNL
Ga0137403_103627961	3300015264	Vadose Zone Soil	MASLKLLVVEDHIPSLELMAEVFTSLEAEVWPLSDSREAASLIDKENFDGIF
Ga0187818_100902151	3300017823	Freshwater Sediment	MSSLKLLVVEDDVPSLELMEEVLTSLKAQVLPTNDGQN
Ga0187821_101765031	3300017936	Freshwater Sediment	MASLKLLIVEDDIASLELMAEVFTSLKAEVLPVSDSREAAGLVDKER
Ga0187869_100200781	3300018030	Peatland	MPPLKVLVVEDDLACLELMTEVFTSLKAEVRAVGKSEKAAAMVNQ
Ga0187784_105693851	3300018062	Tropical Peatland	VSSLKLLVIEDDRDCLELMTEVFTSLKAEVRPLSDSQEAAALLDREKFDG
Ga0193735_10924802	3300020006	Soil	MTPLKLLVVEDDTASLELMTEVFTYLKAEVRPVSDSEKAAGMIDQEKFDGI
Ga0210407_101132292	3300020579	Soil	VLASLKLPVVEDDIASLELMAEVFTYLKAEVYPISDSERVADLVNCEKFDGISWT
Ga0210403_110616832	3300020580	Soil	MQPLKLLVVEDHIPSLELMTEVFTTLKAEVRPISES
Ga0210403_111031441	3300020580	Soil	MKPLKLLVVEDHIPSLELMTEVFTSLKAEVRPISESEKAAALVNQEKF
Ga0210403_114718531	3300020580	Soil	MQPLKLLIVEDNIPSLELMTEVFRSLKAEVHPISESEKAA
Ga0210404_106116882	3300021088	Soil	MQPLKLLVVEDHIPSLELMTEVFTSLKAEVRPISESEKAVAMVNQEKFDG
Ga0210405_102119831	3300021171	Soil	MKPLKLLVVEDHIPSLELMTEVFTSLKAEVRPISESEKAAALV
Ga0210408_106893841	3300021178	Soil	MASLKLLIVEDDIASLELMAEVFRSLQADVLAVSDSQKAAGL
Ga0210388_108255701	3300021181	Soil	MSSLRLLIVEDDPASLELMDEVFSSLKAVVRPVDD
Ga0210393_111455752	3300021401	Soil	MQPLKLLVVEDHIPSLELMTEVFTSLKAEVRPISESEKAVAM
Ga0210393_114631521	3300021401	Soil	LKSREPQLKLLVVEDDLASLELMAEVFGSLHADVHTIYESTKAAAV
Ga0210384_100091752	3300021432	Soil	MASLKILTVEDDIASLELMTEVFRSLKAEVRAVSDSQKAAVLVDQ
Ga0210391_104537551	3300021433	Soil	MQPLKVLVVEDDLANLELMTEVFTSLKAEVRSISDSEKAVGVVNQEKF
Ga0210402_119674491	3300021478	Soil	VNSKEQSPELKLLVVEDDLANLELMAEVFGSLRADVRTVSESTKAVSLVA
Ga0210410_103531754	3300021479	Soil	MASLKLLIVEDDIASLELMDEVFTSLKAKVRPVSDS
Ga0210409_114586061	3300021559	Soil	MQPLKLLVVEDHIPSLELMTEVFTTLKAEVRPISESEKA
Ga0212123_104552733	3300022557	Iron-Sulfur Acid Spring	MPPLKLLVVEDNIPCLELMTEVFMSLKAEVRPISDSEKAVAVVNQ
Ga0179589_101512451	3300024288	Vadose Zone Soil	MASLKLLVVEDDIANLELMTEVFKTLEAEVRPISDS
Ga0207707_113699241	3300025912	Corn Rhizosphere	MASLKLLIVEDDIASLELMAEVFTSLKAEVLPVSDSR
Ga0207663_111305212	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	VKLLIVEDDIASLELMTEVFTSLKAEVRPLSDSQE
Ga0207665_114826072	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MASLKLLIVEDDIANLELMAEVFTSLKAEVCPVSDSEIAADMV
Ga0209375_13010852	3300026329	Soil	MTPLKLLVVEDDTASLELMTEVFTYLKAEVRPVSDSEKAAGMIDQEK
Ga0209116_10339643	3300027590	Forest Soil	MTPLKLLVVEDDLASLELMTEVFVSLKAEVLPINDSEQAARVVNEEK
Ga0208827_10804512	3300027641	Peatlands Soil	MSLRLLLVEDDLPSLELMEEVFTSLKADVRPISDG
Ga0209009_11040091	3300027667	Forest Soil	MQPLKVLVVEDDLANLELMTEVFTSLKAEVRSISDSEK
Ga0209773_102891352	3300027829	Bog Forest Soil	VKDQALAELKILVVEDDLASLELMGEVFGSLKADV
Ga0209693_103211631	3300027855	Soil	MSSLKLLVVEDDLPSLELMDEVFTSLKADVHPISDGDRAADL
Ga0209488_106314061	3300027903	Vadose Zone Soil	MLALKLLVVEDDAASLELMTEVFRSLKAEVLPVSDSEE
Ga0209526_107009012	3300028047	Forest Soil	MAALKLLVVEDDTASLELMAELLQELRPLSDSQEASGLIQQ
Ga0137415_103703231	3300028536	Vadose Zone Soil	MQSLKLLVVEDDIANLELMTEVFRSLAAKVCSISDSEKAADLVNREKF
Ga0308309_115796421	3300028906	Soil	MSLKLLIAEDDGPSLELMTEVFTSLKAAVFPVDDGRKA
Ga0311369_100866063	3300029910	Palsa	MGSLKLLIVEDDIASLELMTEVFTSLEAEVSPVSDSQKAAGLV
Ga0311352_104137371	3300029944	Palsa	MKLRDAMPSLKLLVVEDDLPSLELMDEVFTSLEACVRPINDGETAAELINRE
Ga0311352_111731211	3300029944	Palsa	MVSLKLLIVEDDIASLELMTEVFTSLEAEVSPVSDSQEAAGLVNQ
Ga0311371_116730823	3300029951	Palsa	MKLRDAMPSLKLLVVEDDLPSLELMDEVFTSLEACVRPINDGETAAE
Ga0302176_100732002	3300030057	Palsa	MGSLKLLIVEDDIASLELMTEVFTSLEAEVSPVSDS
Ga0302309_104625882	3300030687	Palsa	MGSLKLLIVEDDIASLELMTEVFTSLEAEVSPVSDSQKAAG
Ga0073994_121603341	3300030991	Soil	MTPLRLLVAEDDLASLELMGEVFRSLKAEVHPVSDSEKV
Ga0302324_1001076191	3300031236	Palsa	MVSLKLLIVEDDIASLELMTEVFTSLEAEVSPVSDSQEAAG
Ga0170818_1108061061	3300031474	Forest Soil	MEPLKLLVVEDDVASLELMTEVFRSLKAQVFPLNDS
Ga0307476_100651931	3300031715	Hardwood Forest Soil	MLALKLLVVEDDPASLELMTEVFRSLKADVRPVSDSE
Ga0307476_102780162	3300031715	Hardwood Forest Soil	MALLKLLVVEDDIASLELMTEVFKSLEADVRPISDSQIAV
Ga0307476_105481562	3300031715	Hardwood Forest Soil	MTPLKLLVVEDDPASLELMTEVFTSLKAAVRALSDSE
Ga0307476_109682982	3300031715	Hardwood Forest Soil	MPPLKLLVVEDNIPSLELMTEVFRSLKAEVRPISDSEKAVAVVN
Ga0307476_114085801	3300031715	Hardwood Forest Soil	MSSLRLLIVEDDPASLELMDEVFTSLKAVVRPIDDGREA
Ga0307474_106076151	3300031718	Hardwood Forest Soil	MASLKLLVIEDDIANLELMSEVFASLEAEVIPIRDSREAAGLI
Ga0307475_110339422	3300031754	Hardwood Forest Soil	MASLKILIVEDDVPSLELMAEVFTSLEAEVRPVSDS
Ga0307478_102918841	3300031823	Hardwood Forest Soil	MAALKLLVVEDDIASLELMAEVFTSLDAEVRSLSDSQQAANLIN
Ga0306926_109459062	3300031954	Soil	VSPVKLLVVEDDRASLELMAEVFTALKAEVRPLND
Ga0307471_1018864972	3300032180	Hardwood Forest Soil	MQTPLKLLVVEDDTASLELMTEVFTHLKAEVRAVNDSEK
Ga0307471_1040871421	3300032180	Hardwood Forest Soil	MGSLKLLVVEDDIAGLELMTEVLTSLNAEVRPVSDSRKAA
Ga0335079_119881041	3300032783	Soil	MTTLRLLIVEDDEASLELMTEVFSSLEADVHPVSEARH
Ga0335077_102604401	3300033158	Soil	MASLKILVVDDDRTDSELMTEVFTSLQAEVRPVADSDEAIALI
Ga0334790_007848_5903_6052	3300033887	Soil	MTPLKLLVVEDDLASLELMAEVFTSLKAEVRPVSDSEKAVGMVNQEKFDG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090107

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences