NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F090069

Metagenome / Metatranscriptome Family F090069

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F090069
Family Type Metagenome / Metatranscriptome
Number of Sequences 108
Average Sequence Length 50 residues
Representative Sequence RISIQEARELTAELAIMTSKLGKTVQEIHAMLAEIRESTTNIDVKFDGGGF
Number of Associated Samples 96
Number of Associated Scaffolds 108

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 95
AlphaFold2 3D model prediction Yes
3D model pTM-score0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater
(25.000 % of family members)
Environment Ontology (ENVO) Unclassified
(56.481 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(62.037 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 46.84%    β-sheet: 0.00%    Coil/Unstructured: 53.16%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

5101520253035404550RISIQEARELTAELAIMTSKLGKTVQEIHAMLAEIRESTTNIDVKFDGGGFSequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.56
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy


Visualization
Unclassified
100.0%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Freshwater Sediment
Freshwater
Freshwater
Freshwater Lake
Freshwater Lentic
Freshwater And Sediment
Freshwater And Sediment
Freshwater
Freshwater, Plankton
Freshwater Lake
Freshwater
Sediment
Marine Plankton
Freshwater
Aquatic
Freshwater
Freshwater
Freshwater
Freshwater
Aqueous
Seawater
Freshwater To Marine Saline Gradient
Estuarine
Salt Marsh
Estuarine Water
Saline Water
Pond Water
2.8%12.0%25.0%9.3%9.3%6.5%10.2%3.7%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
LBLPB2_023335202166559021FreshwaterTSELAIMTGKLGKTVQEIHTMLAEIKESTTNISVKFDGGGF
RCM30_108907523300001842Marine PlanktonILTSKLGQTVGEIHNMLSQIKDSTTQIDVKFDGGTF*
B570J29032_10970610643300002408FreshwaterIQEARDLTAELAIFSAKLGSTVQQIHAMLAQIKESSQSIDVKFDGGSF*
B570J29032_10995966413300002408FreshwaterVNSAEKSNQKEIRITIQEARELTNELALITAKLGKTIQEIHQILSEVRESTTKIDVKFDGGSF*
JGI25925J51416_1015862023300003497Freshwater LakeAVLTSKLGRTVQEIHAMLAEIRESTTKIDVKFDGGGFGS*
Ga0068872_1035097133300005528Freshwater LakeTSKLGQTISEIHQMLAVIKESTTQIDVKFDGGGFGPG*
Ga0078894_1054643013300005662Freshwater LakeRDLTAELAVMTSKLGRTVQEIHEMLAQIRESTTKIDVKFDGGGF*
Ga0075464_1006883543300006805AqueousKDIRITIQEARELTAELAIMTSKLGSTVKEIHQLLSEIKENTTKIDVKFDGGGFN*
Ga0102921_138344123300007603EstuarineEARDLTAELAMMTAKLGKTVSEIHQMLAVIKESTTQIDVKFDGGKF*
Ga0102901_123781913300007634EstuarineMTSKLGRTISEVHAMLAVIKESTTQIDVKFDGGQF*
Ga0102824_117209933300007681EstuarineAKLGKTVQEIHAMLVEIRESTTNINVKFDGGNFT*
Ga0114343_108067143300008110Freshwater, PlanktonLTSKLGSTVQEIHQMLSEIRESTTKSDVKFDGGTF*
Ga0105103_1057251333300009085Freshwater SedimentAEKSQQKEIRITIQEARDLTAELAILTSKLGRTVQEIHQTLAEIRESTTKIDVKFDGGGF
Ga0114977_1051864913300009158Freshwater LakeKSQQKDIRLSIQEARELATELAGMTMNLGKTVTEIHGMLAEIKESSTSDEVKFDGGGF*
Ga0114981_1063163813300009160Freshwater LakeSQQKDIRLSIQEARDLTSELAIMTSKMAKTMQEIHAMLNEIRQNTTEIEVQVDGGGFK*
Ga0114981_1079058913300009160Freshwater LakeTQQKDIRVTIQEARELTAELAILTSRLGKTVNEIHQMLAEISESTTNIDVKFDGGGFGQG
Ga0114975_1012829713300009164Freshwater LakeEKSQQKDIRISIQEARDLTAELAVMTSKLGRTVQEIHEMLAQIRESTTKIDVKFDGGGF*
Ga0114974_1021457913300009183Freshwater LakeQEARELTTELALMSSKLGQTISEIHQMLAVIKESTTQIDVKFDGGQF*
Ga0114976_1008122013300009184Freshwater LakeQKDIRVTIQEARELTAELAILTSRLGKTVNEIHQMLAEISESTTNIDVKFDGGGFGQG*
Ga0129333_1174041713300010354Freshwater To Marine Saline GradientRISIQEARELTAELAIMTSKLGKTVQEIHAMLAEIRESTTNIDVKFDGGGF*
Ga0129336_1024584033300010370Freshwater To Marine Saline GradientSIQEARDLTTELAILTSRLGKTVQEVHQMLSEIRDNTTNINVKFDGGGFN*
Ga0133913_1073777863300010885Freshwater LakeVAAAEKSQQKDIRLSIQEARELATELAGMTMNLGKTVTEIHSMLAEIKESSTSVEVKFDGGGF*
Ga0139557_101098763300011010FreshwaterAERSQQKDIRISIQEAKDLTAELVVLTSKLGRTVQEIHAMLAEIRESTTKIDVKFDGGGFGS*
Ga0157141_101260113300012346FreshwaterMTSKLGKTVQEIHTMLYEIRESTTNIDVKFDGGTF*
Ga0157138_101331853300012352FreshwaterQKDIRMSIQEARELTSELAIMTSKLGKTVQEIHAMLSEIKESTTNIDVKFDGGTF*
Ga0164294_1024341453300013006FreshwaterLTQELAVMTGKLGKTVQEIHVMLAEIRESTTNINVKFDGGNFS*
(restricted) Ga0172362_1012676163300013133SedimentLQEAKDLANDLAVMTAKLSKTVQEIHAMLVDIRSATNKIDVKFDGGGFS*
Ga0170791_1348827733300013295FreshwaterQQKEIRISVQEARDLTAELAIMTSKMAKTMQEIHAMLAEIRQSTTEIEVKVDGGGFGKT*
Ga0181347_113599113300017722Freshwater LakeMMTAKLGRTVSEIHQMLAVIKESTTQIDVKFDGGQF
Ga0181362_102094553300017723Freshwater LakeAKDLTAELAVLTSKLGRTVQEIHAMLAEIRESTTKIDVKFDGGGFGS
Ga0169931_1082714113300017788FreshwaterAEKSQQKEIRITLQEAKDLANDLAVMTAKLSKTVQEIHAMLVDIRSATNKIDVKFDGGGF
Ga0181359_101057683300019784Freshwater LakeARELTQELAVMTAKLGKTVQEIHVMLAEIRESTTNINVKFDGGNFT
Ga0211732_143141313300020141FreshwaterTQVAERSQQKEIRISIQEARDLTTELALMTAKLGKTVSEIHQMLAVIKESTTQIDVKFDGGQF
Ga0211736_1025336913300020151FreshwaterAERSQQKEIRISIQEARDLTTELALMTAKLGKTVSEIHQMLAVIKESTTQIDVKFDGGQF
Ga0211734_1052829013300020159FreshwaterTELAVFSSRLGRTVQEIHGMLAQIKESNQNIDVKFDGGTF
Ga0211734_1123340613300020159FreshwaterLTAELALLTAKLGSTVSEIHQMLAAIKESTTQIDVKFDGGQF
Ga0211733_1064552413300020160FreshwaterSQQKEIRISVQEARDLTAELAIMTSKMAKTMQEIHAMLAEIRQSTTEIEVKVDGGGFGKT
Ga0211733_1093389723300020160FreshwaterAERSQQKEIRISIQEARDLTAELAIMTSKMAKTMQEIHAMLAEIRQSTTEIEVKVDGGGFGKT
Ga0211729_1010764963300020172FreshwaterSKLGRTVQEIHAMLAEIRESTTKIDVKFDGGGFSS
Ga0211729_1011444213300020172FreshwaterEIRISIQEARDLTTELALMTAKLGRTVSEIHQILAVIKESTTQIDVKFDGGQF
Ga0211731_1025433113300020205FreshwaterDLTAELAMMTAKLGKTVSEIHQMLAVIKESTTQIDVKFDGGQF
Ga0208232_100229183300020527FreshwaterELAVMTSKLGKTVQEIHAMLAEIRESTTNINVKFDGGNFS
Ga0213859_1050438823300021364SeawaterKEIRITIQEARELTTDLALLTSKLGTTVSEVHSMLRKIKQDNDELDVKFDGGSF
Ga0222713_1051175333300021962Estuarine WaterLAIMTSKLGSTVKEIHQLLSEIKENTTKIDVKFDGGGFN
Ga0255757_1006848263300023117Salt MarshDKSQQKEIRISIQEARDLTSELALLTSKLGSTVQEIHSLLSEIKRQNTEVDVKFDGGSF
Ga0255142_106891223300024352FreshwaterIRISIQEARELTSELAVMTSKMGKTITEIHQMLAAIKESTTNIDVKFDGGSF
Ga0255288_110137113300024561FreshwaterITIQEARDLTSELAVLTSKLGKTVTEIHQLLSEIKQASTQIDVKFDGGTF
Ga0255268_100816313300024572FreshwaterKDIRISIDEARLLTAELAILTSRLGSTVTEIHQILGEIKETTALIDVKFDGGSF
Ga0209953_100578283300026097Pond WaterRELTQELAILTSNLGNTVAEIHQILKDIRESTTEIDVKFDGGGF
Ga0255170_107711813300026459FreshwaterTIQEAKDLTAELAILTSKLGKTVQEIHQMLAEIKESTTNIDVKFDGGSF
Ga0255270_114471013300026572FreshwaterRISIDEARLLTAELAILTSRLGSTVTEIHQILGEIKETTALIDVKFDGGSF
Ga0255139_103348433300027291FreshwaterAAEKSQQKEIRITIQEARDLTTELASMTARLGKTVQEIHQLLVEIRDSTTKIDVKFDGGGFGS
Ga0255126_109138413300027295FreshwaterRDLTTELALMTSKLGQTISEIHQMLAVIKESTTQIDVKFDGGQF
Ga0255130_104417733300027335FreshwaterQKEIRITIQEARDLTTELAIFSTKLGRTVQEIHGMLAQIKESSQSIDVKFDGGAF
Ga0255125_105219733300027534FreshwaterIQEARDLTTELASMTARLGKTVQEIHQLLVEIRDSTTKIDVKFDGGGFGS
Ga0209651_108028933300027581Freshwater LakeAVAERGQQKDIRLTIQEARELTQELAVMTAKLGKTVQEIHVMLAEIRESTTNINVKFDGGNFT
Ga0209651_111322933300027581Freshwater LakeQVAERSQQKEIRISLQEARDLTTELALMTSKLGQTISEIHQMLAVIKESTTQIDVKFDGGQF
Ga0255118_106277033300027593FreshwaterEKSQQKEIRITIQEARDLTTELASMTARLGKTVQEIHQLLVEIRDSTTKIDVKFDGGGFG
Ga0208974_112604833300027608Freshwater LenticQQKDIRLTIQEARELTQELAVMTSRLGKTVQEIHSMLAEIRESTTNINVKFDGGNFN
Ga0209357_102069383300027656Freshwater LakeLQEARDLTAELAMMTAKLGKTVSEIHQMLAVIKESTTQIDVKFDGGQF
Ga0209553_119360513300027688Freshwater LakeARVAAAERSQQKDIRISIQEAKDLTAELAVLTSKLGRTVQEIHAMLAEIRESTTKIDVKFDGGGFGS
Ga0209443_124439223300027707Freshwater LakeIAVAERSQQKDIRMSIQEARELTQELAVMTGKLGKTVQEIHAMLAEIRESTTNINVKFDGGNFT
Ga0208305_1034332613300027753EstuarineQQKDIRLTIQEARELTQELAVMTAKLGKTVQEIHAMLVEIRESTTNINVKFDGGNFT
Ga0209770_1014835533300027769Freshwater LakeRSQQKEIRITIQEARDLTAELAILTSKLGRTVSEIHQMLSDIRESTTNIDVKFDGGSF
Ga0209500_1020384513300027782Freshwater LakeEARELTAELAIITAKLGKTVQEIHQMLSEIRESTTNIDVKFDGGSF
Ga0209107_1008578913300027797Freshwater And SedimentKTLISIQEAKDLTAELAVLTSKLGRTVQEIHAMLAEIRESTTKIDVKFDGGGFGS
Ga0209229_1007244313300027805Freshwater And SedimentVNIAEKSQQKEIRITIQEARDLTTELAILTAKLGRTVQDIHQALTEIRESTTKIDVKFDGGGF
Ga0209230_1070129613300027836Freshwater And SedimentQQKDIRISIQEAKDLTAELAVLTSKLGRTVQEIHAMLAEIRESTTKIDVKFDGGGFGS
Ga0209550_1076823333300027892Freshwater LakeTTELALMSAKLSKTVSEIHQMLTVIKDSTTQIDVKFDGGKF
Ga0209400_117710733300027963Freshwater LakeAERSQQKEIRISLQEARDLTTELALMTSKLGQTISEIHQMLAVIKESTTQIDVKFDGGQF
Ga0209191_105616663300027969Freshwater LakeLVQDLAILTVKMSKTVQEVHAMLSEIRANTQNIDVKFDGGGFGQG
Ga0255172_101264413300028103FreshwaterILTSKLGKTVQEIHQMLAEIKESTTNIDVKFDGGSF
(restricted) Ga0247835_107718013300028114FreshwaterISIQEARDLTAELALLTAKLGSTVSEIHQMLTAIKESTTQIDVKFDGGQF
(restricted) Ga0247835_110705143300028114FreshwaterLQRITVAEKSQQKEIRITIQEARDLTAELAIFSTKLGRTVQEIHGMLAQIKESSQSIDVKFDGGAF
Ga0268283_104175953300028283Saline WaterIQEARELTAELAIMTSKLGKTVNEIHQMLARIAESSNTVDVKFDGGGF
(restricted) Ga0247843_118069633300028569FreshwaterQEARDLTTELAIFSTKLGGTVQQIHAMLAQIKESSQNIDVKFDGGSF
(restricted) Ga0247844_117596933300028571FreshwaterTIQEARDLTTELAIFSTKLGGTVQQIHAMLAQIKESSQNIDVKFDGGSF
(restricted) Ga0247841_1026145213300029286FreshwaterARDLTAELAIFSTKLGRTVQEIHGMLAQIKESSQSIDVKFDGGAF
Ga0119944_103482033300029930AquaticQEARELTQELSIMTARLAKTVQEVHQMLGEIRDNTNNINVRFDGGGFN
Ga0119945_103693433300029933AquaticARELTQELSIMTARLAKTVQEVHQMLGEIRDNTNNINVRFDGGGFN
Ga0315907_1089742433300031758FreshwaterKDITAEMAILTSKLGQTVQEIHQMLSEIRESNTKIDVKFDGGTF
Ga0315900_10044489103300031787FreshwaterVAEKSQQKEIRITIQEARDLTAELAILTSKLGSTVQEIHQMLSEIRESTTKIDVKFDGGT
Ga0315904_1007984613300031951FreshwaterSVAEKSQQKEIRITIQEARDLTAELAIFSTKLGRTVQEIHSMLAQIKESSQNIDVKFDGGSF
Ga0315904_1013355413300031951FreshwaterIQVAERSQQKEIRITLQEARDLTTELALMTSKLGQTISEIHQMLAVIKESTTQIDVKFDGGGFGPG
Ga0315905_1053674313300032092FreshwaterQESKDLVYELAILTSRLGTTVQEIHQMLSELRESTTKIDVKFDGGTF
Ga0315903_10007069183300032116FreshwaterVNSAEKSNQKEIRITIQEARELTNELALITAKLGKTIQEIHQILSEVRESTTKIDVKFDGGSF
Ga0315903_1025600113300032116FreshwaterVAEKSQQKEIRISIQEAREITAELAVMTSKLSKTVSEIHQMLSAIKESTTQIDVKFDGGT
Ga0335398_1015817013300032435FreshwaterTTELAILTSKLGRTVQEIHQMLAEIKQSTTQIDVKFDGGSF
Ga0334996_0108677_1461_16043300033994FreshwaterQEARDLTSELALMTVKLGLTVTEIHQMLVAIKESTTQIDVKFDGGQF
Ga0334985_0511925_3_1283300034018FreshwaterTSELALMTVKLGLTVTEIHQMLVAIKESTTQIDVKFDGGQF
Ga0335028_0183553_2_1093300034071FreshwaterMTSKLGRTVQEIHEMLAQIRESTTKIDVKFDGGGF
Ga0335020_0184478_2_1303300034082FreshwaterLTSELSVLTSKLGKTVQEIHAMLSEIRESTTKIDVKFDGGQF
Ga0335012_0125685_1_1803300034093FreshwaterEKSQQKDIRISIQEARDLTAELAVMTSKLGRTVQEIHEMLAQIRESTTKIDVKFDGGGF
Ga0335027_0346228_2_1303300034101FreshwaterLTAELAVMTSKLGRTVQEIHEMLAQIRESTTKIDVKFDGGGF
Ga0335029_0690765_10_1563300034102FreshwaterMQEARDLTAELALLTAKLGSTVSEIHQMLAAIKESTTQIDVKFDGGQF
Ga0335029_0776777_1_1113300034102FreshwaterLITAKLGKTIQEIHQILSEVRESTTKIDVKFDGGSF
Ga0335031_0200503_1239_13493300034104FreshwaterLMTVKLGLTVSEIHQMLAAIKESTTQIDVKFDGGQF
Ga0335031_0645888_421_6153300034104FreshwaterRITIAEKSQQKEIRITIQEARDLTTELAIFSTKLGRTVQEIHGILAQIKESSQSIDVKFDGGSF
Ga0335068_0423988_520_6303300034116FreshwaterGMSMHLGKTVSEIHSMLSEIKDSATSIDVKFDGGGF
Ga0335033_0174946_3_1163300034117FreshwaterAVMTSKLGRTVQEIHEMLAQIRESTTKIDVKFDGGGF
Ga0335053_0659130_2_1423300034118FreshwaterEARDLTAELALLTAKLGSTVSEIHQMLAAIKESTTQIDVKFDGGQF
Ga0335054_0697506_357_5453300034119FreshwaterAAERSQQKDIRISIQEARDLTSELAILTSKMAKTMQEIHSMLAEIRQSTTQIEVKVDGGGFN
Ga0335056_0481761_1_1743300034120FreshwaterQQKDIRISIQEARDLTSELAILTSKMAKTMQEIHSMLAEIRQSTTQIEVKVDGGGFN
Ga0335058_0009373_2_1813300034121FreshwaterSQQKDIRISIQEAKDLTAELAVLTSKLGRTVQEIHAMLAEIRESTTKIDVKFDGGGFGS
Ga0335065_0644831_2_1963300034200FreshwaterRIQVAERSQQKEIRISLQEARDLTSELALMTVKLGLTVTEIHQMLVAIKESTTQIDVKFDGGQF
Ga0335052_0064991_2050_22353300034279FreshwaterAERGQQKDIRLTIQEARELTQELAVMTSKLGKTVQEIHAMLAEIRESTTNINVKFDGGNF
Ga0335007_0425439_683_8203300034283FreshwaterARDLTTELALMTSKLGRTISEIHAMLAVIKESTTQIDVKFDGGQF
Ga0335007_0518169_559_7083300034283FreshwaterIQEARELTQELAVMTSRLGKTVLEIHTMLAEIRESTTNINVKFDGGNFN


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.