Metagenome / Metatranscriptome Family F090051

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090051
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	80 residues
Representative Sequence	MFVAATAPASAVVFLFALSFLCFMSGAALRRWPDRVQAYIERVDGSLWFVSPETHRALIHATGVALTALSLLAVIAARIVS
Number of Associated Samples	84
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	75.93 %
% of genes near scaffold ends (potentially truncated)	30.56 %
% of genes from short scaffolds (< 2000 bps)	85.19 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.074 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (22.222 % of family members)
Environment Ontology (ENVO)	Unclassified (30.556 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (35.185 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.55% β-sheet: 0.00% Coil/Unstructured: 39.45%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF11154	DUF2934	46.30
PF05532	CsbD	12.04
PF03160	Calx-beta	10.19
PF02777	Sod_Fe_C	3.70
PF00081	Sod_Fe_N	2.78
PF14013	MT0933_antitox	1.85
PF05915	TMEM_230_134	0.93
PF08241	Methyltransf_11	0.93
PF02563	Poly_export	0.93
PF07715	Plug	0.93
PF02620	YceD	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	12.04
COG0605	Superoxide dismutase	Inorganic ion transport and metabolism [P]	6.48
COG1399	23S rRNA accumulation protein YceD (essential in plants, uncharacterized in bacteria)	Translation, ribosomal structure and biogenesis [J]	0.93
COG1596	Periplasmic protein Wza involved in polysaccharide export, contains SLBB domain of the beta-grasp fold	Cell wall/membrane/envelope biogenesis [M]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.07 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.07 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.07 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	89.81 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	69.44 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	66.67 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	66.67 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.93 %
Unclassified	root	N/A	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000363\|ICChiseqgaiiFebDRAFT_14516385	All Organisms → cellular organisms → Bacteria → Proteobacteria	1089	Open in IMG/M
3300000956\|JGI10216J12902_100123375	All Organisms → cellular organisms → Bacteria → Proteobacteria	896	Open in IMG/M
3300000956\|JGI10216J12902_100433667	Not Available	1179	Open in IMG/M
3300000956\|JGI10216J12902_100526804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	652	Open in IMG/M
3300000956\|JGI10216J12902_105085544	All Organisms → cellular organisms → Bacteria	989	Open in IMG/M
3300000956\|JGI10216J12902_114266658	All Organisms → cellular organisms → Bacteria → Proteobacteria	1068	Open in IMG/M
3300004114\|Ga0062593_101380046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	752	Open in IMG/M
3300004463\|Ga0063356_100764215	All Organisms → cellular organisms → Bacteria	1341	Open in IMG/M
3300004480\|Ga0062592_100272621	All Organisms → cellular organisms → Bacteria → Proteobacteria	1259	Open in IMG/M
3300005328\|Ga0070676_10090324	All Organisms → cellular organisms → Bacteria → Proteobacteria	1875	Open in IMG/M
3300005336\|Ga0070680_100242461	All Organisms → cellular organisms → Bacteria → Proteobacteria	1523	Open in IMG/M
3300005336\|Ga0070680_100836312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	793	Open in IMG/M
3300005354\|Ga0070675_100495889	All Organisms → cellular organisms → Bacteria → Proteobacteria	1100	Open in IMG/M
3300005438\|Ga0070701_11324328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	515	Open in IMG/M
3300005444\|Ga0070694_100003820	All Organisms → cellular organisms → Bacteria	8995	Open in IMG/M
3300005546\|Ga0070696_101351537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	606	Open in IMG/M
3300005617\|Ga0068859_101145706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	856	Open in IMG/M
3300005844\|Ga0068862_102048640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	583	Open in IMG/M
3300006806\|Ga0079220_11289538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	611	Open in IMG/M
3300006844\|Ga0075428_100029686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	6050	Open in IMG/M
3300006845\|Ga0075421_101698610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	683	Open in IMG/M
3300006854\|Ga0075425_100108703	All Organisms → cellular organisms → Bacteria → Proteobacteria	3160	Open in IMG/M
3300006865\|Ga0073934_10002963	All Organisms → cellular organisms → Bacteria → Proteobacteria	32931	Open in IMG/M
3300006881\|Ga0068865_100067703	All Organisms → cellular organisms → Bacteria → Proteobacteria	2523	Open in IMG/M
3300006894\|Ga0079215_10407559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	806	Open in IMG/M
3300006918\|Ga0079216_11873298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	517	Open in IMG/M
3300006954\|Ga0079219_11768281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	576	Open in IMG/M
3300007004\|Ga0079218_10020775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3573	Open in IMG/M
3300007004\|Ga0079218_12070477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	654	Open in IMG/M
3300009094\|Ga0111539_10262451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2010	Open in IMG/M
3300009156\|Ga0111538_10079593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4170	Open in IMG/M
3300009156\|Ga0111538_10310067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1997	Open in IMG/M
3300009156\|Ga0111538_13070461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	583	Open in IMG/M
3300009609\|Ga0105347_1097877	All Organisms → cellular organisms → Bacteria → Proteobacteria	1103	Open in IMG/M
3300009610\|Ga0105340_1425635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	592	Open in IMG/M
3300009789\|Ga0126307_10515717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	965	Open in IMG/M
3300010047\|Ga0126382_12486689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	505	Open in IMG/M
3300010399\|Ga0134127_10116739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2368	Open in IMG/M
3300010399\|Ga0134127_10131314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2246	Open in IMG/M
3300010399\|Ga0134127_10682630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1065	Open in IMG/M
3300010400\|Ga0134122_10675434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	966	Open in IMG/M
3300010403\|Ga0134123_10576804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1076	Open in IMG/M
3300011399\|Ga0137466_1047886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	655	Open in IMG/M
3300011413\|Ga0137333_1080616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	749	Open in IMG/M
3300011439\|Ga0137432_1033911	All Organisms → cellular organisms → Bacteria → Proteobacteria	1509	Open in IMG/M
3300011445\|Ga0137427_10492241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	503	Open in IMG/M
3300012212\|Ga0150985_108207977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1091	Open in IMG/M
3300012891\|Ga0157305_10040036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	958	Open in IMG/M
3300012904\|Ga0157282_10287577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	573	Open in IMG/M
3300012914\|Ga0157297_10082472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	925	Open in IMG/M
3300014272\|Ga0075327_1152644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	720	Open in IMG/M
3300014326\|Ga0157380_10001278	All Organisms → cellular organisms → Bacteria → Proteobacteria	16368	Open in IMG/M
3300014326\|Ga0157380_13416901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	508	Open in IMG/M
3300014880\|Ga0180082_1120614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	601	Open in IMG/M
3300015201\|Ga0173478_10063748	All Organisms → cellular organisms → Bacteria	1251	Open in IMG/M
3300015255\|Ga0180077_1090384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	641	Open in IMG/M
3300015371\|Ga0132258_11129438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1981	Open in IMG/M
3300015372\|Ga0132256_101469997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	792	Open in IMG/M
3300018422\|Ga0190265_10164513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2189	Open in IMG/M
3300018429\|Ga0190272_10311757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1227	Open in IMG/M
3300018469\|Ga0190270_10508545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1150	Open in IMG/M
3300018476\|Ga0190274_10518729	All Organisms → cellular organisms → Bacteria → Proteobacteria	1197	Open in IMG/M
3300018476\|Ga0190274_11538727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	757	Open in IMG/M
3300018481\|Ga0190271_10058955	All Organisms → cellular organisms → Bacteria → Proteobacteria	3321	Open in IMG/M
3300018481\|Ga0190271_11478907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	797	Open in IMG/M
3300019356\|Ga0173481_10028046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1780	Open in IMG/M
3300019361\|Ga0173482_10463420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	606	Open in IMG/M
3300019361\|Ga0173482_10620161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	547	Open in IMG/M
3300019884\|Ga0193741_1136890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	612	Open in IMG/M
3300023062\|Ga0247791_1094657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	502	Open in IMG/M
3300025310\|Ga0209172_10023461	All Organisms → cellular organisms → Bacteria → Proteobacteria	4339	Open in IMG/M
3300025917\|Ga0207660_10152995	All Organisms → cellular organisms → Bacteria	1774	Open in IMG/M
3300025917\|Ga0207660_10330587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1218	Open in IMG/M
3300026089\|Ga0207648_10167176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1944	Open in IMG/M
3300026116\|Ga0207674_11855268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	569	Open in IMG/M
3300027526\|Ga0209968_1018103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1127	Open in IMG/M
3300027617\|Ga0210002_1033911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	855	Open in IMG/M
3300027695\|Ga0209966_1010762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1657	Open in IMG/M
3300027886\|Ga0209486_10006454	All Organisms → cellular organisms → Bacteria → Proteobacteria	5139	Open in IMG/M
3300028380\|Ga0268265_11757368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	626	Open in IMG/M
3300028812\|Ga0247825_10243013	All Organisms → cellular organisms → Bacteria → Proteobacteria	1251	Open in IMG/M
3300028812\|Ga0247825_10289565	All Organisms → cellular organisms → Bacteria	1143	Open in IMG/M
3300031226\|Ga0307497_10028476	All Organisms → cellular organisms → Bacteria	1800	Open in IMG/M
3300031455\|Ga0307505_10090798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1366	Open in IMG/M
3300031455\|Ga0307505_10105849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1266	Open in IMG/M
3300031538\|Ga0310888_10156480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1220	Open in IMG/M
3300031538\|Ga0310888_10995351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	527	Open in IMG/M
3300031731\|Ga0307405_10108368	All Organisms → cellular organisms → Bacteria	1877	Open in IMG/M
3300031820\|Ga0307473_10655271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	732	Open in IMG/M
3300031824\|Ga0307413_10647284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	871	Open in IMG/M
3300031824\|Ga0307413_10856823	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300031854\|Ga0310904_10357209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	944	Open in IMG/M
3300031911\|Ga0307412_11894500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	550	Open in IMG/M
3300032012\|Ga0310902_10899492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	609	Open in IMG/M
3300032013\|Ga0310906_11108401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	573	Open in IMG/M
3300032122\|Ga0310895_10221388	All Organisms → cellular organisms → Bacteria → Proteobacteria	861	Open in IMG/M
3300032144\|Ga0315910_10048637	All Organisms → cellular organisms → Bacteria → Proteobacteria	3090	Open in IMG/M
3300032144\|Ga0315910_10212845	All Organisms → cellular organisms → Bacteria	1453	Open in IMG/M
3300032144\|Ga0315910_10303496	All Organisms → cellular organisms → Bacteria → Proteobacteria	1212	Open in IMG/M
3300032144\|Ga0315910_10340633	All Organisms → cellular organisms → Bacteria → Proteobacteria	1142	Open in IMG/M
3300032144\|Ga0315910_11401576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	545	Open in IMG/M
3300032144\|Ga0315910_11442455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	537	Open in IMG/M
3300032174\|Ga0307470_10194112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1291	Open in IMG/M
3300032179\|Ga0310889_10475553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	631	Open in IMG/M
3300032205\|Ga0307472_100594694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	975	Open in IMG/M
3300034151\|Ga0364935_0300196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	530	Open in IMG/M
3300034659\|Ga0314780_133017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	598	Open in IMG/M
3300034670\|Ga0314795_096310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	589	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	74.07%
Host-Associated	Host-Associated	25.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	64.81%
Plants	Host-Associated → Plants	25.93%
Aquatic	Environmental → Aquatic	9.26%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.81%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.11%
Sediment	Environmental → Aquatic → Sediment	7.41%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.85%
Floodplain	Environmental → Terrestrial → Floodplain	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.04%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.41%
Loam	Environmental → Terrestrial → Soil → Loam	6.48%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.78%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	1.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.85%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.93%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.04%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	10.19%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	9.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.41%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.48%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.56%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.78%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.85%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	22.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	10.19%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	7.41%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	6.48%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.56%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.63%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.70%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	3.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.70%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.78%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.93%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011399	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT842_2	Environmental	Open in IMG/M
3300011413	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT231_2	Environmental	Open in IMG/M
3300011439	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2	Environmental	Open in IMG/M
3300011445	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012891	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2	Environmental	Open in IMG/M
3300012904	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300014272	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailB_D1	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014880	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_16_10D	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015255	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT466_16_10D	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019884	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s2	Environmental	Open in IMG/M
3300023062	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S081-202R-4	Environmental	Open in IMG/M
3300025310	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027526	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes)	Host-Associated	Open in IMG/M
3300027617	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027695	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034151	Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17	Environmental	Open in IMG/M
3300034659	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034670	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiFebDRAFT_145163851	3300000363	Soil	MVVAATAPASAVVFLFVLSFFCFMSGAALRRWPDQVQAYIERVDGSLWFVSPEVHRALINATGIALIALSLLAVIAARIVS*
JGI10216J12902_1001233753	3300000956	Soil	MAIAATAPASAVVFLFVLSFLCFMSGAALRRWPEKVQAYIERVDGSLWFVTAETHRALIHATGLALTVLS
JGI10216J12902_1004336674	3300000956	Soil	MAIAATAPASAVLFLFVLSFLCFMSGAALRRWPDKVQAYIERVDGSLWFVPAATHRALIHATGIALTALSLLAVIAARLVS*
JGI10216J12902_1005268041	3300000956	Soil	MFVAATAPASAVVFLFALSFLCFMSGAALRRWPDEVQAYIERVDGSLWFVTPGTHRALIQATAIALTTLSVLALIAA
JGI10216J12902_1050855441	3300000956	Soil	PMVVSATAPSIAVLFLFAVSFLCFMSGAVLRRWPDQVQAYMERVDGSLWFVSAATHRALILATGIALTALSLLALIAAPLIA*
JGI10216J12902_1142666582	3300000956	Soil	MVVAATAPQSAVLFLFVVSFLCFMSGAALRRWPDRVQAYMERVDGSLWFVSADSHRALIFATGVALTGLSVLALVAARLIA*
Ga0062593_1013800462	3300004114	Soil	APAAALRGKRKEVRSPMVVAATAPASAVVFLFVLSFFCFMSGAALRRWPDRVQAYIERVDGSLWFVTPEVHRALINATGIALIALSLLAVIAARMVS*
Ga0063356_1007642153	3300004463	Arabidopsis Thaliana Rhizosphere	MVVTATASQSAVLFLFVLSFLCFMSGAALRRWPERVQAYMERVDGSLWFVSAETHRALILATGIALTALSVLALVVARLIS*
Ga0062592_1002726213	3300004480	Soil	MVVAATAPASAVVFLFVLSFFCFMSGAALRRWPDRVQAYIERVDGSLWFVTPEVHRALINATGIALIALSLLAVIAARMVS*
Ga0070676_100903241	3300005328	Miscanthus Rhizosphere	MFVIATAPASAVVFLFVLSFLCFMSGAALRRWPDRVQAYIERVDGSLWFVTPETHRALIQAAGVALTVLSLLALIAARIVS*
Ga0070680_1002424614	3300005336	Corn Rhizosphere	MFVVATAPASAVVFLFVLSFFCFMSGAALRRWPDRVQAYIERVDGSMWFVTPATHRALIQATGVALTALSLLALIAARIVS*
Ga0070680_1008363121	3300005336	Corn Rhizosphere	VATAPASAVVFLFVLSFICFMSGAALRRWPDRVQAYIERVDGSMWFVTPETHRALIQATSVALTALSLLALIAARIVS*
Ga0070675_1004958893	3300005354	Miscanthus Rhizosphere	MVVAATAPASAVVFLFVLSFLCFMSGAALRRWPDRVQAYIERVDGSLWFVTPETHRALIQATGVALTVLSLLALVAARIVS*
Ga0070701_113243281	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MVVAATAPASAVVFLFVLSFLCFMSGAALRRWPDRVQAYIERVDGSLWFVTPEVHRALINATGIALIALSLLA
Ga0070694_10000382013	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MFVAATAPASAVVFLFALSFVCFMSGAALRRWPDRVQSYVERVDGSLWFVSAATHRALIHATGVALTALSLLALIAAGIVS*
Ga0070696_1013515371	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MFVIATAPASAVVFLFVLSFICFMSGAALRRWPDRVQAYIERVDGSMWFVTPATHRALIQATGVALTALSLLALIAARI
Ga0068859_1011457062	3300005617	Switchgrass Rhizosphere	MVVAATAPASAVVFLFVLSFLCFMSGAALRRWPDRVQAYIERVDGSLWFVTPEVHRALINATGIALIALSLLAVIAARMVS*
Ga0068862_1020486402	3300005844	Switchgrass Rhizosphere	PASAVVFLFVLSFLCFMSGAALRRWPDRVQAYIERVDGSLWFVTPEVHRALINATGIALIALSLLAVIAARMVS*
Ga0079220_112895381	3300006806	Agricultural Soil	SPMFVAEPAPASAVIFLFVLSFLCFMSGAVLRRWPDRVQAYIERVDGSLWFVTPETHRALIHATGFALTALSLLALIAARIVS*
Ga0075428_1000296865	3300006844	Populus Rhizosphere	MVVTATAPASAVVFLFVLSFFCFMSGAALRRWPDEIQAYIERVDGSLWFVSPETHRALINATGIALIALSLLAVIAARMVS*
Ga0075421_1016986102	3300006845	Populus Rhizosphere	MVVAATAPASAVVFLFVLSFLCFMSGAALRRWPDRVQAYIERVDGSLWFVSPETHRALINATGIALIALSLIALIAARIVS*
Ga0075425_1001087033	3300006854	Populus Rhizosphere	MFITATAPASAVVFLFALSFVCFMSGAALRRWPDRVQSYVERVDGSLWFVSAATHRALIQATGIALTALSLLALIAAGIVS*
Ga0073934_100029639	3300006865	Hot Spring Sediment	MVVAATAPASAVVFLLVLSFLCFMSGAALRRWPDKVQAYIERVDGSLWFVSAATHRTLIQATSFALTSLSMLAVVVARLVF*
Ga0068865_1000677033	3300006881	Miscanthus Rhizosphere	MFVIATAPASAVVFLFVLSFLCFMSGAALRRWPDRVQAYIERVDGSLWFVTPETHRALIQATGVALTVLSLLALVAARIVS*
Ga0079215_104075592	3300006894	Agricultural Soil	MVVAATAPASAVVFLFVLSFLCFMSGAALRRWPDKIQAYIERVDGSLWFVSTETHRALIQATGMTLTALSLLSLIAARFVS*
Ga0079216_118732982	3300006918	Agricultural Soil	TASQSAVLFLFVVSFLCFMSGAALRRWPDRIQAYMEQVDGSLWFVSADSHRALIFATGIALTALSVLALVAAPLIA*
Ga0079219_117682812	3300006954	Agricultural Soil	RARRDRTRPTEEVRSPMFAAATAPASVVIFLFVLSFLCFMSGAVLRRWPERVQAYIERVDGSLWFVTPETHRALIHATGFALTALSLLALIAARIVS*
Ga0079218_100207755	3300007004	Agricultural Soil	MFVAATASASAVVFLFVLSFLCFMAGAALRRWPDKVQAYIERVDGSLWFVTPETHRALIHATGFALTTLSLLALIAARIVS*
Ga0079218_120704771	3300007004	Agricultural Soil	MFVAATAPASAVVFLFVLSFLCFMSGAALRRWPDKVQAYIERVDGSLWFVNPGTHRALIQATAIALTTLSVLALIAARLVS*
Ga0111539_102624513	3300009094	Populus Rhizosphere	VVFLFVLSFFCFMSGAALRRWPDEIQAYIERVDGSLWFVSPETHRALINATGIALIALSLLAVIAARMVS*
Ga0111538_100795933	3300009156	Populus Rhizosphere	MVVAATAPASAVVFLFVLSFLCFMSGAALRRWPDRVQAYIERVDGSVWFVTPEVHRALINATGIALIALSLLAVIAARMVS*
Ga0111538_103100673	3300009156	Populus Rhizosphere	MFVIATAPASAVVFLFVLSFFCFMSGAALRRWPDRVQAYIERVDGSLWFVTPETHRALIQATGVALTVLSLLALVAARIVS*
Ga0111538_130704611	3300009156	Populus Rhizosphere	AVVFLFVLSFFCFMSGAALRRWPDQVQAYIERVDGSLWFVSPEVHRALINATGIALIALSLLAVIAARIVS*
Ga0105347_10978771	3300009609	Soil	MFVAATAPASAVVFLFVLSFLCFMSGAALRRWPDKVQAYLERVDGSLWFVSEQTHRALIHATGAALTALSLLALIAARFVS*
Ga0105340_14256351	3300009610	Soil	MAIAATAPSSAVLFLFVLSFVCFMVGSALRRWPDRVQAYMDRVDGSLLFVSTGTHRALIHATGIALTALSVLALIAARLIA*
Ga0126307_105157172	3300009789	Serpentine Soil	MVVAATAPQSAVLFLFVVSFLCFMSGAALRRWPDRVQAYMERVDGSLWFVSAASHRALIIATGIALTGLSVLALVAARLIA*
Ga0126382_124866892	3300010047	Tropical Forest Soil	FLFVLSFLCFMSGAALRRWPDRVQAYIERVDGSLWFVSPETHRALIHATGFALTALSLLALIAARIVS*
Ga0134127_101167391	3300010399	Terrestrial Soil	FVLSFICFMSGAALRRWPDRVQAYIERVDGSMWFVTPETHRALIQATSVALTALSLLALIAARIVS*
Ga0134127_101313143	3300010399	Terrestrial Soil	MFVIATAPASAVVFLFVLSFLCFMSGAALRRWPDRVQAYIERVDGSLWFVTPETHRALIQATGVALTVLSLLALIAARIVS*
Ga0134127_106826303	3300010399	Terrestrial Soil	VLSFLCFMSGAALRRWPDRVQAYIERVDGSLWFVTPEVHRALINATGIALIALSLLAVIAARMVS*
Ga0134122_106754341	3300010400	Terrestrial Soil	MFVAATAPASAVVFLFALSFVCFMSGAALRRWPDRVQSYVERVDGSLWFVSAATHRALIHATGVALTALSLLALACGRR*
Ga0134123_105768042	3300010403	Terrestrial Soil	MFVAATAPASAVVFLFALSFVCFMSGAALRRWPDRVQSYVERVDGSLWFVSAATHRALIHATGVALTALSLLALLAAGIVS*
Ga0137466_10478862	3300011399	Soil	MFVAATAPASAVVFLFVLSFICFMSGAALRRWPEEIQAYIERIDGSLWFVSEQTHRALIHATGAALTALSLLALIAAPFVS*
Ga0137333_10806161	3300011413	Soil	MFVAATAPASAVVFLFVLSFICFMSGAALRRWPEEIQAYIERIDGSLWFVSEQTHRALIHATGAALTALSLLALIAATFVS*
Ga0137432_10339113	3300011439	Soil	MFIAATAPASAVVFLFVLSFLCFMSGAALRRWPDKVQAYLERVDGSLWFVSEQTHRALIHATGAALTALSLLALIAARFVS*
Ga0137427_104922411	3300011445	Soil	MFIAATAPASAVVFLFVLSFLCFMSGAALRRWPDKVQTYLERVDGSLWFVSEQTHRALIHATGAALTALSLLALIAARF
Ga0150985_1082079771	3300012212	Avena Fatua Rhizosphere	MFPVATAPASAVVFLFVLSFLCFMSGAVLRRWPDRVQAYIERVDGSLWFVTPETHRALIHATGFALTALSLLAVIAARIVS*
Ga0157305_100400361	3300012891	Soil	MVVAATAPASAVLFLFVLSFLCFMSGAALRRWPDRVQAYIERVDGSLWFVTPEVHRALINATGIALIALSLLAVIAARMVS*
Ga0157282_102875771	3300012904	Soil	MVVAATAPASAVVFLFVLSFLCFMSGAALRRWPDRVQAYIERVDGSLRFVTPEVHRALINATGIALIALSLLAVIAARMVS*
Ga0157297_100824722	3300012914	Soil	VVFLFVLSFLCFMSGAALRRWPDRVQAYIERVDGSVWFVTPEVHRALINATGIALIALSLLAVIAARMVS*
Ga0075327_11526443	3300014272	Natural And Restored Wetlands	SAVVFLFVLSFLCFMSGAALRRWPDKVQAYIERVDGSLWFVSTGTHRALIYATATALTALSLLAVIAARLVA*
Ga0157380_1000127816	3300014326	Switchgrass Rhizosphere	MVIAATASSSAVLFLFVLSFVCFMVGSALRRWPDRVQAYMDRVDGSLLFVSTETHRALIHATGIALTVLSVLALIAARLIA*
Ga0157380_134169012	3300014326	Switchgrass Rhizosphere	VLFLFVLSFLCFMSGAALRRWPDRVQAYIERVDGSLWFVTPEVHRALINATGIALIALSLLAVIAARMVS*
Ga0180082_11206141	3300014880	Soil	MFVAATAPASAVVFLFVLSFLCFMSGAALRRWPDKVQAYLERVDGSLWFVSEQTHRALIHATGAALTALSLLALIAAPFVS*
Ga0173478_100637483	3300015201	Soil	ASAVVFLFVLSFFCFMSGAALRRWPDRVQAYIERVDGSLWFVTPEVHRALINATGIALIALSLLAVIAARMVS*
Ga0180077_10903841	3300015255	Soil	MFVAATAPASAVVFLFVLSFLCFMSGAALRRWPDEVQAYLERVDGSLWFVSEQTHRALIHATGAALTALSLLALIAARFVS*
Ga0132258_111294383	3300015371	Arabidopsis Rhizosphere	VVFLFVLSFFCFMSGAALRRWPDQVQAYIERVDGSLWFVTPETHRALINATGIALIALSALAVIAARIVS*
Ga0132256_1014699971	3300015372	Arabidopsis Rhizosphere	MFAAATAPAVVFLFVLSFLCFMSGAALRRWPERVQAYIERVDGSLWFVSPETHRALIHATGVALTTLSLLA
Ga0190265_101645135	3300018422	Soil	MLVAAPQSAVLFLFALSFLCFMSGAALRRWPDRIQAYMERVDGSLWFVNASTHRALIFATGIALTALSVLALIAARLIA
Ga0190272_103117572	3300018429	Soil	MVVTATAPHVLFLFALSFLCFMSGAALRRWPDRVQAYMESVDGSLGFVSAATHRALILSTGFALTALSVLALVAARLMS
Ga0190270_105085452	3300018469	Soil	MFIAATAPASAVVFLFVLSFLCFMSGAALRRWPDKVQAYLEQVDGSLWFVSEQTHRALIHATGAALTALSLLALIAAPFVS
Ga0190274_105187293	3300018476	Soil	MVIAATASSSAVLFLFVLSFVCFMVGSALRRWPDRVQAYMGRVDGSLLFVSTETHRALIHATGIALMVLSVLALIAARLIA
Ga0190274_115387271	3300018476	Soil	MAIAATAPSSAVLFLFVLSFVCFMVGSALRRWPDRVQAYMDRVDGSLLFVSTGTHRALIQATGIALTALSVLALIAARLIA
Ga0190271_100589553	3300018481	Soil	MVIAATAPSSAVLFLFALSFVCFMVGSALRRWPDRVQAYMDRVDGSLLFVSTETHRALIHATGIALMVLSVLALIAARLIA
Ga0190271_114789071	3300018481	Soil	MFVAATAPATAVLFLFALSFLCFMSGAALRRWPDKVQNYIERVDGSVWFVSSATHRALIHATGIALTALSLVALIVARLIS
Ga0173481_100280461	3300019356	Soil	MVVAATAPASAVVFLFVLSFFCFMSGAALRRWPDRVQAYIERVDGSLWFVTPEVHRALINATGIALIALSLLAVIAARMVS
Ga0173482_104634202	3300019361	Soil	APAAALRGKRKEVRSPMVVAATAPASAVVFLFVLSFLCFMSGAALRRWPDRVQAYIERVDGSLWFVTPEVHRALINATGIALIALSLLAVIAARMVS
Ga0173482_106201612	3300019361	Soil	APAAALRGKRKEVRSPMVVAATAPASAVVFLFVLSFFCFMSGAALRRWPDRVQSYIERVDGSLWFVTPEVHRALINATGIALIALSLLAVIAARMVS
Ga0193741_11368902	3300019884	Soil	MFVAATAPASAVFLVVLSFLCFMSGAALRRWPDEVQAYLERVDGSLWFVSEQTHRALIHATGAALTALSLLALIAARFVS
Ga0247791_10946572	3300023062	Soil	AVVFLFVLSFFCFMSGAALRRWPDRVQAYIERVDGSLWFVTPEVHRALINATGIALIALSLLAVIAARMVS
Ga0209172_100234612	3300025310	Hot Spring Sediment	MVVAATAPASAVVFLLVLSFLCFMSGAALRRWPDKVQAYIERVDGSLWFVSAATHRTLIQATSFALTSLSMLAVVVARLVF
Ga0207660_101529955	3300025917	Corn Rhizosphere	MFVVATAPASAVVFLFVLSFFCFMSGAALRRWPDRVQAYIERVDGSMWFVTPATHRALIQATGVALTALSLLALIAARIVS
Ga0207660_103305873	3300025917	Corn Rhizosphere	MFVVATAPASAVVFLFVLSFICFMSGAALRRWPDRVQAYIERVDGSMWFVTPETHRALIQATSVALTALSLLALIAARIVS
Ga0207648_101671763	3300026089	Miscanthus Rhizosphere	MFVVATAPASAVVFLFVLSFHCFMSGAALRRWPDRVQAYIERVDGSLWFVTPETHRALIQAAGVALTVLSLLALIAARIVS
Ga0207674_118552682	3300026116	Corn Rhizosphere	MVVAATAPASAVVFLFVLSFLCFMSGAALRRWPDRVQAYIERVDGSLWFVSPETHRALINATGIALIALSALAVIAARIVS
Ga0209968_10181032	3300027526	Arabidopsis Thaliana Rhizosphere	MFVIATAPANAVVFLFVLSFLCFMSGAALRRWPDRVQAYIERVDGSLWFVTPETHRALIQATGVALTVLSLLALIAARIVS
Ga0210002_10339111	3300027617	Arabidopsis Thaliana Rhizosphere	MFVIATAPASAVVFLFVLSFLCFMSGAALRRWPDRVQAYIERVDGSLWFVTPETHRALIQATGVALTVLSLLALI
Ga0209966_10107624	3300027695	Arabidopsis Thaliana Rhizosphere	MFVIATAPASAVVFLFVLSFLCFMSGAALRRWPDRVQAYIERVDGSLWFVTPETHRALIQATGVALTVLSLLALIAARIVS
Ga0209486_100064547	3300027886	Agricultural Soil	MFVAATASASAVVFLFVLSFLCFMAGAALRRWPDKVQAYIERVDGSLWFVTPETHRALIHATGFALTTLSLLALIAARIVS
Ga0268265_117573681	3300028380	Switchgrass Rhizosphere	APASAVVFLFVLSFLCFMSGAALRRWPDRVQAYIERVDGSLWFVTPEVHRALINATGIALIALSLLAVIAARMVS
Ga0247825_102430132	3300028812	Soil	MAIAATAPASAVLFLFVLSFLCFMSGAALRRWPDKVQAYIERVDGSLWFVPAATHRALIHATGIALTALSLLAVIAARLVS
Ga0247825_102895653	3300028812	Soil	MVVAATAPASAVVFLFVLSFLCFMSGAALRRWPDRVQAYIERVDGSLWFVTPEVHRALINATGIALIALSLLAVIAARMVS
Ga0307497_100284765	3300031226	Soil	MIAAATAPASAVVFLFALSFVCFMSGAALRRWPDRVQSYVERVDGSLWFVSAATHRALIHATGVALTALSLLALIAAGIVS
Ga0307505_100907981	3300031455	Soil	NMFAAAMAPASAVVFLFVLSFLCFMSGAALRRWPDQVQAYLERVDGSLWFVSAGTHRALIHATGIALTSLSLLAVVGARLIS
Ga0307505_101058493	3300031455	Soil	MFIAVTAQPHAVLFLFALSFLCCMAGAALRRWPSEVAAYMDRIDGSLLFVSAAAHRTLIQAAGVTLTALSIVALAAASFIA
Ga0310888_101564803	3300031538	Soil	MVVTATAPASAVVFLFVLSFFCFMSGAALRRWPDEIQAYIERVDGSLWFVSPETHRALINATGIALIALSLLAVIAARMVS
Ga0310888_109953512	3300031538	Soil	PAAALRGTRKEVRSLMVVAATAPASAVVFLFVLSFLCFMSGAALRRWPDRVQAYIERVDGSVWFVTPEVHRALINATGIALIALSLLAVIAARMVS
Ga0307405_101083681	3300031731	Rhizosphere	MVVAATASQSAVLFLFVVSFLCFMSGAALRRWPDRIQTYMEQVDGSLWFVSAASHRALIFGTGIALTALSVLALIAARLIA
Ga0307473_106552711	3300031820	Hardwood Forest Soil	MFVAATAPASAVVFLFALSFLCFMSGAALRRWPDRVQAYIERVDGSLWFVSPETHRALIHATGVALTALSLLAVIAARIVS
Ga0307413_106472841	3300031824	Rhizosphere	MVVAATASQSAVLFLLVLSFLCFMSGAALRRWPDRIQAYVERVDGSLWFVSAATHRALIFATGIVLTGLSVLAVVVARLIS
Ga0307413_108568233	3300031824	Rhizosphere	MVVAATASQSAVLFLLVLSFLCFMSGAALRRWPDRIQAYVERVDGSLWFVSAATHRALIFATGIVL
Ga0310904_103572092	3300031854	Soil	MVVAATAPASAVVFLFVLSFLCFMSGAALRRWPDRVQAYIERVDGSVWFVTPEVHRALINATGIALIALSLLAVIAARMVS
Ga0307412_118945001	3300031911	Rhizosphere	MVVAATAPQSAVLFLFVVSFLCFMSGAALRRWPDRVQAYMERVDGSLWFVSAGSHRALILATGIALTVLSVFALVAARLIA
Ga0310902_108994922	3300032012	Soil	MFVAATAPASAVVFLFALSFVCFMSGAALRRWPDRVQSYVERVDGSLWFVSAATHRALIHATGVALTALSLLALIAAGIVS
Ga0310906_111084012	3300032013	Soil	MVIAATASSSAVLFLFVLSFVCFMVGSALRRWPDRVQAYMDRVDGSLLFVSTETHRALIHATGIALTVLSVLALIAARLIA
Ga0310895_102213883	3300032122	Soil	MVVTATAPASAVVFLFVLSFFCFMSGAALRRWPDQVQAYIERVDGSLWFVTPEVHRALINATGIALIALSLLAV
Ga0315910_100486372	3300032144	Soil	MFAAATAPASAVVFLFVLSFICFMSGAALRRWPDEIQAYFERVDGSLWFVSPGTHRALLQATGIALTSLSLLAVVGARLIS
Ga0315910_102128453	3300032144	Soil	MAIAATAPASAVLFLFVLSFLCFMSGAALRRWPDKVQAYIERFDGSLWFVTAETHRALIHATGIALTALSLLAVIAARLVS
Ga0315910_103034961	3300032144	Soil	MVVAATAPASAVVFLFVVSFLCFMSGAALRRWPDKVQAYIERVDGSMWFVSTETHRALIHATGMTLTALSVLAVIAARLVS
Ga0315910_103406332	3300032144	Soil	MAIAATAPVSAVVFLFVLSFLCFMSGAALRRWPDKVQTYIERVDGSLWFVSAETHRALIQATGIALVALSLLAVIAARMVS
Ga0315910_114015761	3300032144	Soil	VVAATAPASAVVFLFVLSFLCFMSGAALRRWPDRVQAYIERVDGSLWFVTPEVHRALINATGIALIALSLLAVIAARMVS
Ga0315910_114424551	3300032144	Soil	MIPSAPSSAVLFLFALSFLCFMSAAALRRWPERVQAYMDRYDGSLWFVSESTHRALIHATAIALTGLSLLAVVAARFVA
Ga0307470_101941123	3300032174	Hardwood Forest Soil	MFLAATAPASAVVFLFALSFLCFMSGAALRRWPDRVQAYIERVDGSLWFVSPQTHRALIHATGFALTALSLLALIAARIVS
Ga0310889_104755531	3300032179	Soil	KRKEVRSPMVVAATAPASAVVFLFVLSFFCFMSGAALRRWPDRVQAYIERVDGSVWFVTPEVHRALINATGIALIALSLLAVIAARMVS
Ga0307472_1005946942	3300032205	Hardwood Forest Soil	MFLAATAPASAVVFLFALSFLCFMSGAALRRWPDRVQAYIERVDGSLWFVSPETHRALIHATGVALTALSLLAVIAARIVS
Ga0364935_0300196_78_323	3300034151	Sediment	MAIAATAPSSAVLFLFALSFICFMVGSALRRWPDRVQAYMDRVDGSLLFVSTGTHRALIQATGIALTALSLLALIAARFIA
Ga0314780_133017_38_283	3300034659	Soil	MFVIATAPASAVVFLFVLSFFCFMSGAALRRWPDRVQSYVERVDGSMWFVTPATHRALIQATGVALTALSLLALIAARVVS
Ga0314795_096310_32_277	3300034670	Soil	MVVAATAPASAVVFLFVLSFFCFMSGAALRRWPDRVQAYIERVDGSLWFVTPETHRALIQATGVALTVLSLLALIAARIVS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090051

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences